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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015529 Rhodococcus sp. WB1 chromosome, complete genome 2 crisprs csa3,DEDDh,WYL,c2c9_V-U4,cas3,Cas9_archaeal,cas4,DinG 0 2 2 0
NZ_CP015530 Rhodococcus sp. WB1 plasmid pWB1, complete sequence 0 crisprs RT 0 0 0 0

Results visualization

1. NZ_CP015529
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015529_1 845164-845417 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015529_2 5084732-5084873 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015529_1 1.2|845277|25|NZ_CP015529|CRISPRCasFinder 845277-845301 25 MF975638 Streptomyces phage Abt2graduatex2, complete genome 45901-45925 4 0.84
NZ_CP015529_1 1.2|845277|25|NZ_CP015529|CRISPRCasFinder 845277-845301 25 MT889365 Microbacterium phage Quenya, complete genome 15870-15894 4 0.84
NZ_CP015529_2 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder 5084817-5084845 29 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2896287-2896315 4 0.862
NZ_CP015529_2 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder 5084817-5084845 29 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4426222-4426250 4 0.862
NZ_CP015529_2 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder 5084817-5084845 29 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5136959-5136987 5 0.828
NZ_CP015529_2 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder 5084817-5084845 29 MN234199 Mycobacterium phage Ekdilam, complete genome 4682-4710 7 0.759

1. spacer 1.2|845277|25|NZ_CP015529|CRISPRCasFinder matches to MF975638 (Streptomyces phage Abt2graduatex2, complete genome) position: , mismatch: 4, identity: 0.84

tgtgacagtgccggccgctgtgaca	CRISPR spacer
tcggactgtgccggccgctgtgact	Protospacer
*  *** ***************** 

2. spacer 1.2|845277|25|NZ_CP015529|CRISPRCasFinder matches to MT889365 (Microbacterium phage Quenya, complete genome) position: , mismatch: 4, identity: 0.84

tgtgacagtgccggccgctgtgaca	CRISPR spacer
ggtgaccgtgccggccgctgcgacc	Protospacer
 ***** *************.*** 

3. spacer 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.862

gcctcagggtggctacccgcccccgccgg	CRISPR spacer
gccgccgggtggctacccgcccccgccac	Protospacer
*** * *********************. 

4. spacer 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.862

gcctcagggtggctacccgcccccgccgg	CRISPR spacer
gccccagggtggctacccgccgccgcagc	Protospacer
***.***************** **** * 

5. spacer 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.828

gcctcagggtggctacccgcccccgccgg	CRISPR spacer
tccgcagggcggctacccgcccccgcccc	Protospacer
 ** *****.*****************  

6. spacer 2.2|5084817|29|NZ_CP015529|CRISPRCasFinder matches to MN234199 (Mycobacterium phage Ekdilam, complete genome) position: , mismatch: 7, identity: 0.759

gcctcagggtggctacccgcccccgccgg	CRISPR spacer
gcgcagcggtggctacacgcccccgccgt	Protospacer
** . . ********* *********** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 841841 : 883596 33 Acanthamoeba_polyphaga_mimivirus(20.0%) plate,protease,tail NA
DBSCAN-SWA_2 2607810 : 2615990 9 Mycobacterium_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage