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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015638 Pseudomonas fluorescens strain L111 chromosome, complete genome 5 crisprs DEDDh,DinG,csa3,cas3,WYL 1 1 5 0

Results visualization

1. NZ_CP015638
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015638_1 618737-618867 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015638_2 2267176-2267280 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015638_3 2311821-2311961 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015638_4 4238268-4238394 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015638_5 5246909-5246985 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 141804-141838 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 159625-159659 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 184164-184198 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 220970-221004 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 561922-561956 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 2299071-2299105 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 5476413-5476447 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 6142177-6142211 0 1.0
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP015638.1 615997-616031 1 0.971

1. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 141804-141838, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

2. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 159625-159659, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

3. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 184164-184198, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

4. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 220970-221004, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

5. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 561922-561956, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

6. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 2299071-2299105, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

7. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 5476413-5476447, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

8. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 6142177-6142211, mismatch: 0, identity: 1.0

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgtttttcgcgagcaag	Protospacer
***********************************

9. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to position: 615997-616031, mismatch: 1, identity: 0.971

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
gacacgcgttatcgttgacgttcttcgcgagcaag	Protospacer
**********************.************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP013526 Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence 363258-363292 10 0.714
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP013579 Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence 363231-363265 10 0.714
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP013546 Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence 377652-377686 10 0.714
NZ_CP015638_3 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder 2311874-2311908 35 NZ_CP013573 Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence 363231-363265 10 0.714

1. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 10, identity: 0.714

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
ttgccgcggtatcgttgacgtttatcgcgggggcg	Protospacer
    **** ************** *****.* . *

2. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.714

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
ttgccgcggtatcgttgacgtttatcgcgggggcg	Protospacer
    **** ************** *****.* . *

3. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.714

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
ttgccgcggtatcgttgacgtttatcgcgggggcg	Protospacer
    **** ************** *****.* . *

4. spacer 3.1|2311874|35|NZ_CP015638|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.714

gacacgcgttatcgttgacgtttttcgcgagcaag	CRISPR spacer
ttgccgcggtatcgttgacgtttatcgcgggggcg	Protospacer
    **** ************** *****.* . *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1276273 : 1353626 81 Pseudomonas_phage(21.43%) lysis,plate,tRNA,tail,holin NA
DBSCAN-SWA_2 1398192 : 1403149 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_3 4033427 : 4043445 12 uncultured_Caudovirales_phage(71.43%) protease,tRNA NA
DBSCAN-SWA_4 5854428 : 5917545 56 Klosneuvirus(16.67%) holin,protease NA
DBSCAN-SWA_5 6418601 : 6479433 47 Escherichia_phage(33.33%) transposase,protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage