CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016448	Methyloversatilis sp. RAC08 chromosome, complete genome	11 crisprs	csa3,DEDDh,Cas9_archaeal,DinG	3	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016448_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_1

866087-866169

Orphan

Consensus_repeat	Method
GGGGTGAGCGCAGCGATGCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_1

>merge|NZ_CP016448|1|866087-866169|CRISPRCasFinder
GGGGTGAGCGCAGCGATGCCCAACAAGCAAGTAAAGCCACGCGATCAGCCCGTAGGTTGGGGTGAGCGTAGCGATGCCCAACA

>NZ_CP016448|1|1|866087-866169|CRISPRCasFinder
GGGGTGAGCGCAGCGATGCCCAACA	AGCAAGTAAAGCCACGCGATCAGCCCGTAGGTT
GGGGTGAGCGTAGCGATGCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069037995.1\|880376_881255_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NZ_CP016448.1\|WP_069038000.1\|885497_885908_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP016448.1\|WP_069037992.1\|863857_865093_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP016448.1\|WP_069040434.1\|862452_863271_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|376873
NZ_CP016448.1\|WP_069037993.1\|865095_866016_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378934
NZ_CP016448.1\|WP_069037990.1\|861332_862421_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP016448.1\|WP_069037996.1\|882013_882664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181619
NZ_CP016448.1\|WP_069037998.1\|884369_885074_-\|TonB-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|223880
NZ_CP016448.1\|WP_069037988.1\|857970_860064_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|319871
NZ_CP016448.1\|WP_069040433.1\|860745_861216_-\|DUF3305-domain-containing-protein	unknown	unknown	gnl\|CDD\|371702
NZ_CP016448.1\|WP_069037999.1\|885073_885478_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP016448.1\|WP_069037986.1\|857038_857251_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|274310
NZ_CP016448.1\|WP_069040436.1\|877038_878625_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP016448.1\|WP_069037989.1\|860129_860756_-\|DUF3306-domain-containing-protein	unknown	unknown	gnl\|CDD\|371701
NZ_CP016448.1\|WP_069040435.1\|866232_876879_-\|filamentous-haemagglutinin-family-protein	unknown	unknown	gnl\|CDD\|372178
NZ_CP016448.1\|WP_069038001.1\|885997_887677_-\|DUF2341-domain-containing-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP016448.1\|WP_069037987.1\|857314_857974_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP016448.1\|WP_069037991.1\|863267_863861_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP016448.1\|WP_069037997.1\|882666_884319_-\|putative-porin	unknown	unknown	gnl\|CDD\|374891
NZ_CP016448.1\|WP_069037994.1\|878780_880319_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069037995.1\|880376_881255_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	6.90198e-06
NZ_CP016448.1\|WP_069038000.1\|885497_885908_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.30649e-22
NZ_CP016448.1\|WP_069037992.1\|863857_865093_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.7168e-175
NZ_CP016448.1\|WP_069040434.1\|862452_863271_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|376873	pfam02634, FdhD-NarQ, FdhD/NarQ family. A pan-bacterial lineage of proteins. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity. Structurally, they possess a deaminase fold with a characteristic binding pocket, suggesting that they might bind a nucleotide or related molecule allosterically to regulate the formate dehydrogenase catalytic subunit.	2.05541e-92
NZ_CP016448.1\|WP_069037993.1\|865095_866016_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378934	pfam12727, PBP_like, PBP superfamily domain. This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.	3.00884e-33
NZ_CP016448.1\|WP_069037990.1\|861332_862421_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	4.8421e-172
NZ_CP016448.1\|WP_069037996.1\|882013_882664_-\|hypothetical-protein	gnl\|CDD\|181619	PRK09039, PRK09039, peptidoglycan -binding protein.	1.68411e-11
NZ_CP016448.1\|WP_069037998.1\|884369_885074_-\|TonB-C-terminal-domain-containing-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	6.31501e-10
NZ_CP016448.1\|WP_069037988.1\|857970_860064_-\|4Fe-4S-binding-protein	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	2.68445e-11
NZ_CP016448.1\|WP_069040433.1\|860745_861216_-\|DUF3305-domain-containing-protein	gnl\|CDD\|371702	pfam11749, DUF3305, Protein of unknown function (DUF3305). Several members of this family are annotated as being molybdopterin-guanine dinucleotide biosynthesis protein A; however, this could not be confirmed. The family is found in proteobacteria.	2.87692e-36
NZ_CP016448.1\|WP_069037999.1\|885073_885478_-\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	7.84081e-22
NZ_CP016448.1\|WP_069037986.1\|857038_857251_-\|formate-dehydrogenase	gnl\|CDD\|274310	TIGR02811, formate_dehydrogenase_accessory_protein_FdhX, formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General].	4.59446e-07
NZ_CP016448.1\|WP_069040436.1\|877038_878625_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.04192e-56
NZ_CP016448.1\|WP_069037989.1\|860129_860756_-\|DUF3306-domain-containing-protein	gnl\|CDD\|371701	pfam11748, DUF3306, Protein of unknown function (DUF3306). This family of proteobacterial species proteins has no known function.	3.19219e-20
NZ_CP016448.1\|WP_069040435.1\|866232_876879_-\|filamentous-haemagglutinin-family-protein	gnl\|CDD\|372178	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam05860.	1.66597e-22
NZ_CP016448.1\|WP_069038001.1\|885997_887677_-\|DUF2341-domain-containing-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	1.11544e-36
NZ_CP016448.1\|WP_069037987.1\|857314_857974_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	6.5757e-24
NZ_CP016448.1\|WP_069037991.1\|863267_863861_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	8.56462e-90
NZ_CP016448.1\|WP_069037997.1\|882666_884319_-\|putative-porin	gnl\|CDD\|374891	pfam16930, Porin_5, Putative porin.	0

>NZ_CP016448.1|WP_069037993.1|865095_866016_+|helix-turn-helix-transcriptional-regulator
MSADEDQPGEASPYLTAREAAAYLHLNEKTLYAMIQEGGVPATKVTGKWLFPRALLDDWLLESTHGGVLADRLLIAGSDDPWLAHSIARLAQRAEDGTLIAYSPCGTRKGLALLAQRRANACPIHWGDAQHATRRHALLLREYTGSSGWVTVQLALREQGVMLSRTSAPVATLADLLARQPTLIQRGSGAGSQHFFVQACTAAGLALPPLTQSAATEREAAFMVASGAGDCAPGTRAAAGEFGLPFLSLGREALDLVMPRTLYFRALLQQLLAELASADSTDLAARLGGYDLAPLGKLRAATTEAG
>NZ_CP016448.1|WP_069037992.1|863857_865093_+|molybdopterin-molybdotransferase-MoeA
MTDRFTPVADARAHILAACSPVAGTQRVPLRDALGRVLAADVISPVSVPPHDNSAMDGYAVRHADLSADGDTRLAIVGQAFAGHGWAGEVAAGQAVRIMTGAVMPAGADTIVIQETARLDGSTVIVPPGQKAGQHRRRAGEDLHAGEPALRVGRLLRPADIGLAASLGIPELTVRRRVRVGVLSTGDEVMSIGDPAREGGIYDSNRYTLTGMLTRLGCEVVDLGVARDTREALSAALEAAVGEVDAIITSGGVSVGEADFVREILASLGEVTFWKIAMKPGRPMAFGTLGKGARSTLLFGLPGNPVATMVTFHFFARDALLKLMGVSPVSAPIHFAALSDTAMKKQPGRTEYQRGILELRDGLWHVAVTGAQGSGILRSMCDANCIIVLGDDCGNVAVGDAVNVIPFEGLI
>NZ_CP016448.1|WP_069037991.1|863267_863861_+|molybdenum-cofactor-guanylyltransferase-MobA
MNAGITGLVLAGGLGRRMGGIDKGLQEFRGEPMVAQVIRRFAPQVDALIVNANQNIERYAAFGHPVVPDVITGYAGPLAGLHAGLNACRTPLLVTSPCDSPFLPLDLVARLHEALEREGADLAVARTGEQSHPVFSLVRRHVLPGLTDFLDGGGRKVDLWYSALKVVEVSFDDQPDAFANINTLNELAALSVRPDTP
>NZ_CP016448.1|WP_069040434.1|862452_863271_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MQRPLLTDAARPATIEIPAINERGETVPTAIAGEHALTLYLDKRELVTLMTLGGAPEALVIGWLRNQRMLASIDDIVSVQVDWEVNAAAITTRHGVADLDARMATRTVTTGCGQGTVFGDLMEDIEKIRLPADARLTESALYAMLDVVRTHETIYKQAGAVHGCALFRGAELLYFVEDVGRHNAVDAIAGHMWLDGVDGGDKIFYTTGRLTSEMVIKAAQMGIPFLVSRSGLTQMGYDIARQVGITMIGRSQGKHYLLLTGMDRFLRDGAAT
>NZ_CP016448.1|WP_069037990.1|861332_862421_+|GTP-3',8-cyclase-MoaA
MSEKIIHLLDTRTAARTAAVVPDHPIPATGRLDDTRGRAVRDLRISVTDRCNFRCVYCMPKSVFDKDYPYLARAELLSFEEIERIASLFVAHGVNKLRITGGEPLLRKNIEQLIERLARLPVEITLTTNGTLLPQKARALRDAGLTRVTVSLDAMDDDTFRRMNDVDFPVSQVLEGIDAAHAAGLTPIKVNMVVKRGTNDHAIVPMARHFKDSGHIVRFIEFMDVGSSNGWKMDEVLPSAEVIARIHADMPLEPIGANYPGEVAQRWRHVDGSGEIGVISSVTQAFCSSCTRIRLSTEGKIYTCLFATEGHDLRALLRAGRSDADIASAIGAIWQARGDRYSEIRTADTAARRKIEMSYIGG
>NZ_CP016448.1|WP_069040433.1|860745_861216_-|DUF3305-domain-containing-protein
MELRVLHNKWTDHVWEARALQPEGPESPAAPVVFSKSAAATQWMFPPLDFTLYTDEADNYLLNVTAAEPRIFVMWRPDEDADPPVRPMQLSASYGEAARWMDSGEKVDGLPMPADIRDWIEAFARRFQKAPEPRRQKRFARTGDGNTHYGGGGHGR
>NZ_CP016448.1|WP_069037989.1|860129_860756_-|DUF3306-domain-containing-protein
MADDPVRGFLGRWSRLKQAAAESAAADPVPVVVPAADATAPNDEPDAPLPSVDSLDFDSDFRGFLSDKVDEGVKRAALKKLFHTGPFNTMDGLDVYIEDFSVFEPLPASMVAQLAHARETLSPTLPADWFEPEVDAERAAESASESTAELIEPERLPDAPPESKALREAPDEAEPELKSFPFLDADALPGSPDELTLPAPAESRSRSE
>NZ_CP016448.1|WP_069037988.1|857970_860064_-|4Fe-4S-binding-protein
MNNADKAIHLCSCNGTVSFDITRLTDALALDAPLDVGEQLCRRDAHTFAQLLGRAPEAIVGCTQESALLRELADDAGSASGVTFINLRDIAGRSARGADVQPALAAQLAMARLAEPAPVPAVSYESAGQLLIIGPAGAALGWAQRAQQQYGERLAINVLITANDRSELPVRRDYPVASGRNVSVAGWLGAFEVSWQRANAIDLDACVRCNACIDACPEGAIGYDYQVDAARCTGHRACASACRDIGAIDFAAIGAPRSETYDLVLDLSEPALLRIPHPPQGYLSPGRDPLEQSLALQQIASLVGEFEKPKFFTYKPSICAHSRNSKQGCNQCIDVCSTSAIRADGDGVFVEPHLCMGCGACATVCPTGAMRYAYPSASDVALRIKTALKAWRATGGHAPRILFHGETRGEELIALAGRHRGLPADVLPLAVHDVASVGLELMFAALSYGAAQCVILSQGDQPDAYAAATAAQIGIGRSVLAALGYPASALVAVTADDAATLTHALGAHPAAGVSCPPASFALPAEKRGALEFCLEHLVRHSPVKADVIALPAGAPFGAVNIDQAACTLCMSCVGACPASALMDGGERPALRFLERNCVQCGLCVNTCPENALSLEPRLLIGDAARRERVLNEAEPFHCIRCSAPFGTKQMIDAMTGKLAAHSMFAGGDALRRLQMCADCRVIDMMQSPGRETSVFDL
>NZ_CP016448.1|WP_069037987.1|857314_857974_-|molecular-chaperone-TorD-family-protein
MTTETQRRPMAFVREPASDEDMARANHYALISRLFHAAPDGTLLDTLAASGDWPVDGDAPSAEAMLMARAWNALCAASSAMDAAAAQDEFDALFGGVGRPQVVPFASFHLAGFVNEKPLARLRDDLAALGLQRAAGESDPEDHIAALADVMRLLLTDTTRSEADRAAAQDRFFATHIEPWYGALIDALDAAPEANFYRRAGQYLRCFLDIENAARQIEA
>NZ_CP016448.1|WP_069037986.1|857038_857251_-|formate-dehydrogenase
MTDKDNLKANLKRRHFLLTAGIGGVGAAAAVVAVRSTGEAEPATDLTAKNDKGGYRMTEHIANYYRTARV
>NZ_CP016448.1|WP_069040435.1|866232_876879_-|filamentous-haemagglutinin-family-protein
MNTNRYRLIFNELSATWVPVAECVAARGKRSAGRLQRHVLATACALAFATPVMAAGALPVAAPNFVDGRLPGTATMTQTANQMVIQQTGNAVMLNWNSFNIGRGNAVHFDQASAAMRAINVVVPGGPRSEIDGSLTARGQVFIFNQAGILFGPGANIDVGGLVGSSLKLNDELLQRALNSLGSTGAALTPFADGDYAGRATGDITVARGARILAAKNGRVLLAAPNVRVGADVDTTIDTPLTPAQRAALPDARIEADEGQVVLAAGERIYIADPLDSRLRGFLVEVDNGGTVTTDSASELLSDRGNITLVGLNIRHAGAARATTSVTLNGTVFLKARDSVAARQVDAMFPDAEPLATGVNVPIGQRTGSVELAAGAVIDISPDEASRTQTARDDALFRRSEINLYGHTIVLADAGPDGVGVTLRAPSGLLRVTAEATALSSTQPVPQRDAASRVYIGSGSVIDLAGLDAFADADREIVRVELRGDEVKDAPLLRDEEFGRALFGKQVWVDLREGTELFDIAGYLGGVERSLDEKLTTGGQFVAYSQGDVLTHSASSIDLSGGTVTYRAGDVGYTLVQSADGRSQSVADARADRIYTGTQDRTRTVAERIEGRDAGELTVTAFGMALDGAVKAQRTVGATQRELVTRALGPGKSDVLGSPQAGRIDLNLRLVNGLAAQDTRFVNSTGTRTLSATAALPTELWLRSDWFSSGVGSFELTGAGDVVLPEDVSLTLGPTALYNAPTGRWSDGSRFAVTGTTLTIDGDISAAGGDISLRTGGLADDAPRATRTISVGANAQLSAAGQWQRDTRTSAPGYVAADGGSVTIDADSHVDLAQGSQIDVSAGAWQTLDGTRELGDAGAISIGAGFEVTGGDPGTGAPVGSFFGNLNMGARLSAFAASLNGRASTGGTLVLRSAALAIDGVRNGLQGDTLYLSPTLFSDAGFSDFTLIGGNRVDIGGASALTLTPVVQARAIDGIRSGSADSLAGLGSIAAVPRALRDDGVQLAFAATSESTGTLTVADNATINVDAGGAIDLSANRSLELAGALNAPGGRIALGMDEVQQDDIYFGASLFIASTARLNTSGTFLQTPGLSYVDGTLFDGGSIDIAARRGYLVIQDGAQLRADGTSAVLAQRTGALGALSAVRIDSSGGRISLNAREGLYADPLLSARAGGSNALGGQLSVTLDQGSNNWGDLLSLPAALTGPRTLDILQGGNSGSAAFVPGAAPDAPTYAGRGVFALDALDGSGISDLTLAVLGNGGNFGTLRFSEDVDASVAGRMVLNAANIRGTNGADVLLGAAVLDWTNVGRIQQNHAQPTAVAAGDGSLVLAADLVQVSGNLAASGFTDVTLDARGDLRASASPGYVADGASLVTSGDLTLRAAQVYPTSASRYAFEIHNNPAGTLRIESSGAAAGPVYSALGSLTFAAPDIVQAGRVVAPFGDIVLRSETITRTGAGTTRTEAAGGSIELAAGSVTSVSADGLLLPYGQTALSGRDWLYLVGNDARIELDGTPQKRITLNADNVVLQGAQGDQAAARVDLSGGGDLQAWEWIAGSGGSRDILAAPQDSYAIVPTLGSGYAAYDLSMWAEEGNGLRIGEAVQVLASANGLAAGTYTLLPARYALLPGAFLISLSPDDSSLAAGQAQANVDGSARVSVRTAQALAGATTPTGKAFVAELLTSEQVRNRAEYLISNTADVFDDGRSTADAGRLSLQVGQALTLEGVLDTSRGAAARGAQVDITAQALALLGQGAAARVGEVGVSVARLNALDAESLLLGGTRSDFDEDSGETLVDVRATDDTGRLIRGASTVRLDNAAGPALSAPDVVLVARDSVLIEAGSQIAAVGSADPEALRIAGSGADADGAALRVSAADAAPISRDAPSGVRGELTLGAGSRIAGRGVVLDSTLETRNLGATIALPQSGGALALTASTINVGDVPTDAPGLRFDNSQLAALGDPSRLTLRAYGGLNLYGEVTLGSASLDLLRIDAAGIGGVDNAGLTQQIVAGEVQFANASPAAVALAPAAGTGALSVSADRIVLDSTPAAAAGQAGFEISGFDAVTLTAANEVRVSGDGDYRVMADTVRIATPQIVADTGANTRVAVDGALSISGGATPAGTVQAGIGAALALDAQTIDLASRIALPSGRVSLSATQDVRVAEGGTIDVSGTAKNYLGKTVTTPGGDVVLASRTGDVTLAQGALIDVSAASAAATGGNAGSITLSAAEGELSVADGALRAQSAGGNAGGALSVDVRSATSLDSLAAQGSEFTRSWSARVRTGDTRLDTDLKASDIAIATDAGSLTIGSTLDASGADQGGRIELSARRALDYIDGMTTGAGDLVLESGARLDARATEFVAESSGTRGEGGSVILESSPRSAGGESGPAQGGRIRIADGAVIDVGTTSGVVNGVAQASAAQQGDVWLRAERTGNTAVAIDGNLSNAIDGARHVFVEGTRIYDGSTLSMSAAHADAAAMTSVANVAATRAALGLPAQDADGGTRFHVRPHIEFRADGNFTINATDLAANTYQGGTEAGSLTVRAAGNLNVNGALSDGFGRLNASSQTIVLGALTSAGLTQSRFDLGQRDTAWSMRLVSGADLAGAGALSLQALDTLVAANRGDLVLAPNAQVRTGAGDIDVAVGRDLVLGARAAIYTAGYQVARGAEFGTQTLLNLNGSGNRQAEYATDGGDVMIRAQRSIVATESPGIVGDWLLRQGALSPTGEFLSGSNQRNTTWYARIDQFSQGVATFGGGDIRVTAGNDIRNLGVFTVTNGRLSGAAGTTPDAANLQVLGGGDVTVRAGGDIGSAILMVDRGLLDAQAAGDFGSARSSGAGSVLLLGEASAKLGAAGSIDLETIASSTAVRQATNTTTSNRSSYFFRYGEDSRVDLLSYGGSVSLDNAATPWGALALWEGLNPLLPSSLNAVAMGGDLNLRNGMVLLPATYNDLLLAASGNLNLATATGGVVSIKIADSSPALVPSVLRPAANFNNVFWVDLANPNIVSGIRAHDADLNANRVVEPVRLVAETGNITVPAPTASLALVVNSPQPVQVEAGGDISNLTIRSQHFSDSDITRVRAGGNITFGTVFESDGVTPSGSIAEGIQTGGRGKLEVAAGGSIDLANSFGIVTRGNFDNPWLDEVGASILVQAGSAGFDGLALWSSLRPVRGAAGEDSYDKVLLSVSGATSIDALLAGPAGSTLTRVRSEGRTLLTQRLGAIDAAIIGFMRAGGAAPGTPDTQLLQAFDALPAAAQQDFFASQQPLMSALLNAGLNYAGKLGDAIGAGETGYAPGVALVGTAFPEAAESGNINLFFSQVKSEQGGDVNLFAPGGSINVGVAGAGASAASASRQGVFAIGEGEINAIAGEDFQLGPSRVFTLGGGDIQLWSTAGNIDAGRGSRTASATPPPQVRIRGDLVVLDISDSVSGSGIGTLKRSDEVRDADIRLFAPSGAIIALDAAIRSSGNLTIGAQQVIGNSISVGGSLSGGAAVSAAAPAAAPSAPPPTEANKAVDQGQKAAAAGQKDARDPSSILTVELVGLGEEATASGCEEDDEDERCKERAKRAN
>NZ_CP016448.1|WP_069040436.1|877038_878625_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MAATVLAFLLALHMPAAAQDASRFDIFEFEIEGNTVLPAEAIERAVYPFLGEGRNAEDVNSAVAALEKAYQDAGYLTVAVGIPEQAVTTGVVKLEVTEGKVERLRVTGAEYTLPSRVREGAPSLAEGGVPHFPEVQEDLGRLGRNGDLQVTPLLQPGRVPGSVAVELRLDDKSPLHGSVEVNNKRSADTDAGRLEATVRYDNLWQRRHSIGVTYFVSPRDREQVEVWGLNYSAPLGDAILAAYYARSNSNVPTLFDTATLGRGDTAGFRYVRPLPDRGRGFFHSISLGLDYKDNKQDTLGIGGTPFTISQPVRYWVWSGQYGLTVPLQSGARLRFGTTLSAGSNAMNEREIDCVGTRVEQFECRRFGARPGFFVSRFEFEGAFPLPGGWAASARLDLQRSSDPLINSEQFSAGGFDSVRGYLESERLADEGERVRLELATPGKQLFDSAVGLSGLLFYDWAGLRIRQAFPGQDSQSALESVGLGLRVNSPRGIRLDADWAYALRDGAPLPGRTREGDQRLLVRVGYEF
>NZ_CP016448.1|WP_069037994.1|878780_880319_-|hypothetical-protein
MKLKSLAIACAMMAAGSSFAAGTVNIGGVSHQVVYFGGATAPDNFLNDIAEGVLTGITYYLAPNYRAFAGAANGVPGVTDGTRVLFIKRSAGGSVFGVNPVARAQRVKTIDVNNCTSGNGTKATPFNGCAVVGIDPGEANHAAANNAGLVIDFGVSDVEPAMFAGPLNTENDTPALSPQEVARMRVQPVNQLMMGLAATNTVPDTTFFSRSTYGAMLNNQITTWDQVDPDLEGDVVVCRRVEGSGTQTSYNWFFGNFPCASNEGGAIEPARMTDSFGWKSSGTGTTADPFIIDPAAGYTVIENSSSGNVRSCMAAANNGTDYTFTSWDPETQATKTFKVPFSSTGPVKAIATLSLDSYTGTSGWSFRNLDGVGTFNASTQTPSANATGIFPSKENLIKGRYDFVVELSIQDRTVAVTNEQGDVVPAIAGVQKAFADEVVRRAGSPRFTGNFENTGVQVSTPFAFASLPQFYAGLTDTNGSEVDGNNVRFSDLYVSKFSRNANTCSPLRFIGN
>NZ_CP016448.1|WP_069037995.1|880376_881255_-|PEP-CTERM-sorting-domain-containing-protein
MFKMKLLAGVAAVALSGAVNAGIVGSSTGNTELVLTAYVGDVGYTYDLADAGFNSIFGSNVKIDSLIGNGNQTSYSTSAAPNGAQLTNTKSYLANDFSTGIVFDAELTGFASFLTLAGGADGVLWNVWTGESSGVRRIIQTVSSTPTDRVVTSAINTAVQNFGFYTDANSQGGTHNNLDVEVDGYRITTVEDLTAFAGNVAPRLNGAYNSFGSIGDTLDMYVVRGASPTSNTARGGFAQLLGMTDQAVTARVYVGDQGEYRLQISAVPEPETYAMLLAGLGLIGFAARRRRA
>NZ_CP016448.1|WP_069037996.1|882013_882664_-|hypothetical-protein
MKILSFLLVALLGATSVHAQQASREQEQLRRLRAQAQQLQQALSAEQQARQQAAAEADRLKQAAEVELPKLEEEAASAKRRASGAQRKADQLASELEEARVAAAAQAQQLEATRKQLAARERDLAQTRNTLQKTERELEGARTQGESLTGKLAQCTKDNVALYQTGIDMLDRWRDRTMGERIGQAEPFTQIGRVKLENLVEGYRDRLEDSLSRQAQ
>NZ_CP016448.1|WP_069037997.1|882666_884319_-|putative-porin
MKKSLLPVALAALFALPAHASEAETLDTLRQTTLNLIDALVDTGVLTREKADALVKAAEAKTAKAVARAKKDTTVRVQYVPESVKAEIRDQLKQEVLAQARSEGWATPNAIPEWTERIKIEGDLRVRYQNDRFPAGNTPIGGFAPGAIGNPAATNDDFPLGTRFPSGVDLDGNGFPNGNASDDVNRLRLRARLGVLAKINDSVSAGLRFTTGNVTDRVSTNQTLGSGFNKYSFLVDRAYIKIDPVEWASFTGGRVPNPWFATDLVWDEDLNFDGIAVNLRNVTPTATLRPFATAGWFPLRADNPPNADKQWLAGAQIGTEFDWNSSIKLRFGLAKYHYSRIEARTDNNYDALNGPLQGYGRYEHSSALRAKGNTLVQTNSAIDNTEAPIYGLASKFEPWVLTATADLAHFDPVHVLLSAEYVKNTGFDRGDIQRRTGLALTDGKDTAYHLRAAVGMPAVRLANDWQVFASYKYIGSDAVLDGFTDSDFGAGGTNLKGFVLGGSYGIYRDTAVGLRWYSAKNIQTMTYDPTAITAQRYEVDTLMMDMNVRF
>NZ_CP016448.1|WP_069037998.1|884369_885074_-|TonB-C-terminal-domain-containing-protein
MAALAEDSLEGVSTGRRVRNILLALVGMGFVGYGGYWLKSQFSTPSAPTRQVTKISIIPDTPPPPPPPPREEKRPEPKEQKDVKVEQPKPVEAPPQQAEQLKMEGAAGDGPSAFASGDVTNEYKGGDIGSTIGGAPAKPNRMQYAFYTNALQRHIQDELARNRNVKQIDYRVVVKVWLGRDGSIQRAVLDESTGDDKADSALSAALADMRAFRDAPPADMPQPIRLRITNRLTG
>NZ_CP016448.1|WP_069037999.1|885073_885478_-|biopolymer-transporter-ExbD
MQVNTEAKPYDSINVTPMLDLAYVLLVVFILMTTAGVQGLTMTLPKPSNKPSTEQHEIKIVQVMASGALMVNGVGVTLGQLEGQLNAVRARDPKFSVMIRGEARAPYSGVIEVIDLVNRMGIENVGLITSRIGT
>NZ_CP016448.1|WP_069038000.1|885497_885908_-|biopolymer-transporter-ExbD
MSADVKDDNQPYDEINVTPMLDLAYVLLVVFIIMTTASVQGIKVEAPVTETVVSLAKPQTRAITITAAGDVFLDAYPVDLAMLETRLAQHKSANPALPVVLKGDAAAHFEKVSAVLEICKRLDITEVGLVTKKAAG
>NZ_CP016448.1|WP_069038001.1|885997_887677_-|DUF2341-domain-containing-protein
MKTLIALGAFAALIPSFANAWWDEAWTARRIVTLDTSAAGVPITAPQNSIPVAIRLHSGNFDFLAAKDDGSDIRFVTADDKTVLKHHIERYDALNELAVVWVQVPLIAAGDAPATLYAYFGNAAVGGAQDSKATYDASTVGVWHFSEAAPLADASASALVAQGAVQIQKAALLGDAAIFGGAPITVAAAAPTATTAGGAWTMSAWIKPAALPQQATLYGQGALTVKIEDSALALNIGATRLAGGTLQPGVWQHVAATVGGGKATLYVNGQPAGSADVALTAEQADVVIGEGYTGELDELQLANTVRSPDWVKLAALGQGADATFVAVREEVAESEGGHSHFAVLVDNLTVDAWVVIIILGVMFLISAWVMVDKAMQVMRIDKANRGFINRFRTAANDFLLLDKGETYGDSSLFRLYGAGLREIRKRFDTQGEAAGLTGASMDAIKAAIDADLVRESHKLNARMVLLTIAISGGPFLGLLGTVVGVMIVFAAIAAAGDVNVTAIAPGIAAALLATVAGLAVAIPALFGYNYLASRIKNISADMQIFVDEFITRVAEVHGR

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Crispr_ID: NZ_CP016448_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_2

907491-907592

Orphan

Consensus_repeat	Method
GATCGCGGCGAGGCCGCCGCTCCCACAGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_2

>merge|NZ_CP016448|2|907491-907592|CRISPRCasFinder
GATCGCGGCGAGGCCGCCGCTCCCACAGGCCTCGCCGCGATAGGCACTTTGCACGGCGATGGTCGCGGCACGATCGCGGCGGGGCCGCCGCTCCCACAGGCC

>NZ_CP016448|2|2|907491-907592|CRISPRCasFinder
GATCGCGGCGAGGCCGCCGCTCCCACAGGCC	TCGCCGCGATAGGCACTTTGCACGGCGATGGTCGCGGCAC
GATCGCGGCGGGGCCGCCGCTCCCACAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069038011.1\|897686_898304_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP016448.1\|WP_069038010.1\|896187_897432_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP016448.1\|WP_069038019.1\|910851_911301_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NZ_CP016448.1\|WP_069038015.1\|904674_905061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069038014.1\|901885_904489_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133057
NZ_CP016448.1\|WP_069038017.1\|905900_907295_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP016448.1\|WP_069040439.1\|907687_908521_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP016448.1\|WP_069038020.1\|911314_911578_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|224888
NZ_CP016448.1\|WP_069038009.1\|895523_896195_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|131266
NZ_CP016448.1\|WP_069038023.1\|913570_914365_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP016448.1\|WP_069038026.1\|917037_917619_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226230
NZ_CP016448.1\|WP_069038012.1\|898970_900065_+\|NADH:flavin-oxidoreductase/NADH-oxidase	unknown	unknown	gnl\|CDD\|239242
NZ_CP016448.1\|WP_069040438.1\|898398_898872_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|377770
NZ_CP016448.1\|WP_069038021.1\|911581_912799_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP016448.1\|WP_069038024.1\|914386_915310_-\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NZ_CP016448.1\|WP_069038013.1\|900328_901870_-\|glucan-1,3-beta-glucosidase	unknown	unknown	gnl\|CDD\|227625
NZ_CP016448.1\|WP_069038022.1\|912795_913290_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|367391
NZ_CP016448.1\|WP_069038016.1\|905154_905880_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP016448.1\|WP_069038025.1\|915363_916665_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_CP016448.1\|WP_069038018.1\|908706_910851_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|226417

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069038011.1\|897686_898304_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.34727e-11
NZ_CP016448.1\|WP_069038010.1\|896187_897432_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	3.89085e-172
NZ_CP016448.1\|WP_069038019.1\|910851_911301_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	8.92474e-66
NZ_CP016448.1\|WP_069038014.1\|901885_904489_-\|glycosyltransferase	gnl\|CDD\|133057	cd06435, CESA_NdvC_like, NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.	5.54555e-130
NZ_CP016448.1\|WP_069038017.1\|905900_907295_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.16897e-55
NZ_CP016448.1\|WP_069040439.1\|907687_908521_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	7.58953e-20
NZ_CP016448.1\|WP_069038020.1\|911314_911578_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.19244e-26
NZ_CP016448.1\|WP_069038009.1\|895523_896195_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|131266	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking].	6.97372e-119
NZ_CP016448.1\|WP_069038023.1\|913570_914365_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.29717e-123
NZ_CP016448.1\|WP_069038026.1\|917037_917619_-\|ANTAR-domain-containing-protein	gnl\|CDD\|226230	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms].	3.67329e-44
NZ_CP016448.1\|WP_069038012.1\|898970_900065_+\|NADH:flavin-oxidoreductase/NADH-oxidase	gnl\|CDD\|239242	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.	0
NZ_CP016448.1\|WP_069040438.1\|898398_898872_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|377770	pfam07080, DUF1348, Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.	1.16542e-97
NZ_CP016448.1\|WP_069038021.1\|911581_912799_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	6.07957e-168
NZ_CP016448.1\|WP_069038024.1\|914386_915310_-\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	1.22002e-75
NZ_CP016448.1\|WP_069038013.1\|900328_901870_-\|glucan-1,3-beta-glucosidase	gnl\|CDD\|227625	COG5309, COG5309, Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism].	7.29138e-46
NZ_CP016448.1\|WP_069038022.1\|912795_913290_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|367391	pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.	2.71033e-75
NZ_CP016448.1\|WP_069038016.1\|905154_905880_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	3.51057e-80
NZ_CP016448.1\|WP_069038025.1\|915363_916665_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	3.99779e-130
NZ_CP016448.1\|WP_069038018.1\|908706_910851_+\|4Fe-4S-binding-protein	gnl\|CDD\|226417	COG3901, NosR, Regulator of nitric oxide reductase transcription [Transcription].	1.65266e-53

>NZ_CP016448.1|WP_069038017.1|905900_907295_+|HAMP-domain-containing-protein
MPRTLFGQILLTLLGGLLVANGIGLWLVVDDRVRLSRQVRSEYAATRVAESIALINDTAPAGRARLVRLLESPSTALSLDEPWYDDARPVDEDFEAFASKVGERIAGRHVHQVITLERPKAPAGAAAADVLPLRPPPPRPPALARLLAKPNADNVSTQARLNDGTVLTFRYSPPPAVAERPLRIIGSLLLVAVVVSLLSIWVVRRLTRPLDMFARAADGLARDLEQAPLGESGPREVAGAARAFNSMQRALRTLIHTRAQALAGVSHDLRLPITRVRLRLEQLPEGPVRDAIERDLADMETLIDDTLAFLRAGDSSEAAAPTRLDALVEGVADDIAALGADIEVRGSVAQPVIVRPSITRRCLANLMDNARRYGGGKIRVTVSGNATEARVDIDDDGPGIPDAERERVFEPYVRLEASRARHTGGSGLGLAIARAVARAQGGDITLSRRPEGGLRASLVLPIAP
>NZ_CP016448.1|WP_069038016.1|905154_905880_+|response-regulator
MNTAHPKPRLLVVDDDPDLRELLRDYLGKQDMDVRTVADGPGLRAALAHEPCDLLILDVMLPGDDGLALCREIRAKSRLPILMLTARGDELDRIIGLEMGADDYLPKPFHPRELLARVRSILRRAPEHPDGDGNVRTLKFAGWTLDLGARHLVDAQGVVTPLSSGEFRMLNALAESPNRVLSRDQLMDVLAGRSAGPFDRTVDVMISRLRRRLGDDGREPRIIRTLRSEGYVLSVPVEKHV
>NZ_CP016448.1|WP_069038015.1|904674_905061_+|hypothetical-protein
MNRHLFHHNTPLTGLIIAFAAAVAASAALRYGLMESDALHGLCAAASDDWRCAARRYAPQLFIDQRIGWLALAAGALATATRIPVLAAVAVISGGAGLILYSADHAAAGLLLGLIALTSTRSRGRGAY
>NZ_CP016448.1|WP_069038014.1|901885_904489_-|glycosyltransferase
MKRHISFARILMALFVAGGVAAVHFGLWAVMNRPVSLVEPLDYIDGFSYSPYRRDQTPLRGIYPSYEEIAQDMSQLGGIAHRIRTYNSTENPEVSDLAGQNDLKVTAGAWIDTDKVRNRREIGALLADARLHGNIDRLMVGNESLLRADVTIPEMIEYLDEVREATDLPVSTAEPWHVWLKNPELANHVDYLAVHLLPYHEGVPADKAVDYAMARYQELLDAFPGRAILIGEIGWPSKGPTIQAAVASEENQARFVREFLYRSLCKNLDYFLIEAYDQPWKIEIEGWAGAYWGMFNADRQLKFPLEGSVDRNSGWIDDAVVATVFALVPMLLLCLAQRGMSMFGLLWMCVLVQACVTAIVISARLPADYYFTLRDLTALIGLVFGVMLTAGVLLTNGFEFAEVFFKARWRRAYKAAEPLPPDQQPFVSVHLACCNEPPEMVIATIDSLAAMDYQNFEVLVIDNNTRDEALWKPVEARMAELGPRFRFFHLLPWPGFKAGALNFALKQTDPRATVVGVVDADYVVTPDWLSALIPHFHDEKVAVVQAPQAHREWERHPFRRMCNWEFEGFFRIGMHHRHERNALIQHGTMTLVRRSRLESSGSWSEWCICEDTELGLRLLENGDELRYIDRVFGRGLTPASFAALKSQRFRWAFGAMQILKGHWRSLFGRSKLDSGQRYHFITGWFSWFGDALQLVFAMGAIAWTAAMLIWPKLFSLPVTIMLAPVLGLLVAKAAMGPILYRRAMDCPWADIAGASLVSLGLSHSIARGVIAGLTHKRGVFLRTAKGRGESGLAKFFQPIREEMYLLLALIAAAWAMIMLRGTQNIEVVLWVTMLGLQSLPYLAAVGCQFIAQLPEKAEPLPAQAQAA
>NZ_CP016448.1|WP_069038013.1|900328_901870_-|glucan-1,3-beta-glucosidase
MNRSAPRWVRFALVHVVVLVLLAVWLWQRNVAQPLAEVPADAGPLQCVSYAPYYRPGESPLQPDFRVTRERIDADLARLAEISGCVRLYSVDQGLHHVPELAGKHGLKVLLGAWIGGDKLKNDRELAQAIELANRHPDVVRGLIVGNEVLLRREQTPDAMRVYIERAQAATNVPVTYADVWEFWLMNKGLAQSVDFVTVHVLPYWEDEPQPIDRAITHVEEVMKTVDAAFDKPLLIGETGWPSVGKQRDGARPGVIEQARYLREFVIAAQTHGWQYNLIEAFDQPWKRRLEGTVGGFWGLLDSDGHAKFAWQGPLAARVDGPQPLVAGAAGLALAVVLSTLGRVRRLAATVAFAVSGVLAGVIAPLQFEYLALACRSPLEWAAMGVIAAAGWLMWAALPWTLHGGPGEAVRLAARVLLFGLAFSGLLLAVDGRYRDFPFLLFLLPAVQWGLAARLARLAPLPHLPEGALFAGIAVIGSAVAWLADWRNPQALAWLALTLVMASAFALRRERGY
>NZ_CP016448.1|WP_069038012.1|898970_900065_+|NADH:flavin-oxidoreductase/NADH-oxidase
MSSQLFQPFALGALQLTNRIVIAPMCQYSAQDGCATDWHLMHLGQLALSGAGLLIIEASAVEPEGRISAQDLGLWSDANEAALARVLDAVRAHSAMPIAIQIGHAGRKASVARPWEGGAQIAPAAGGWQTVAPSAQPHAPGEHPPIALGAAGLERIRTAFADTARRAARLGLDAIEVHTAHGYLLHQFLTPLANARSDEYGGSLDNRMRFPLEVFDAVRAAFPADKPVGVRISASDWVDGGWDVDQSVAFTQALKARGAAYIHVSSGGASPLQQIPAVPGYQVAFAERIKRDGGLPTIAVGLITEAEQAEAILANGQADLIALARAMLYDPRWPWHAAAKLGAQVVAAPQYLRCQPREFKTLFR
>NZ_CP016448.1|WP_069040438.1|898398_898872_+|nuclear-transport-factor-2-family-protein
MTDAPRPPLPPFTADTAAQKVRAAEDGWNNRDPHKVSLAYTPDSRWRNRSEFINGRAEIVDFLTRKWAKEHEYRLIKELWCTGGNRIAVRFAYEWHDAEGQWFRSYGNENWEFDERGLMARRHASINDLPISEADRLFRWPQGRRPDDHPGLSELGL
>NZ_CP016448.1|WP_069038011.1|897686_898304_-|TetR/AcrR-family-transcriptional-regulator
MTFTLDDLAGSGPLPDQDARTRVLETAYRLFYRHGLRATGIDRIIAESGVAKMSFYRHFPSKQALIDAYLDLRHARWMAWLEDRLAGLTARDWLDALPDALDDWFRAPGFRGCAFINGHAEGGPDAPAMTVTHKRELAARTERACAEAGLPQPGEVTADLLLAIEGAIVRAQMEGADAAQQPLRRLFARTLSDAGGKPDGRAPQR
>NZ_CP016448.1|WP_069038010.1|896187_897432_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MNYEILLGLRYVRAKRRNGFISFISLISTLGLALGIAALITVLSVMNGFQKELRTRILGVASHVQITGYDNELTDWQQVADRALQNKDVKAAAPYVSEQAMLSFDQTVRGAMVRGVLPAAEDGVADFSQHMRAGSLTDLQPGGFGVVLGIELARALRVQVGEKVTLIAPQGLVTPAAVLPRLKQFTVVGVFEAGHFEYDASLALIHMQDAQTLYRMEDRVSGVRLKLGDLFDAPRVARDLHAQMSGDGLLVGDWTRQHANFFRAIAIEKNMMFIILMLIVAVAAFNIVSMLIMVVTDKQADIAILRTLGASPASMMAVFIVQGAIIGGGGLLLGVAGGVALASNLDIVVPAIEAIAGVSLWSAEVYFIPELPSEILWSDVITVTVIGGLLTLAATLYPSWRASRVQPAEALRYE
>NZ_CP016448.1|WP_069038009.1|895523_896195_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MNEVVLKCEGLSKVFHQGKVEVPVLSGVDLAVLRGERVAIVGASGSGKSTLLHLLGGLDTPTSGSVSLLGQQYSTLGEAARGALRNRSLGFVYQFHHLLAEFSALDNVAMPLMIRRQSRPQAREAAAAMLAEVGLAHRVEHQPGEMSGGERQRVAIARALVTQPACVLADEPTGNLDSKTADGVFDLMLTLSRTRGTSFVIVTHDERLAARTDRIVRLVDGRI
>NZ_CP016448.1|WP_069040439.1|907687_908521_-|sel1-repeat-family-protein
MTSQRFRPRFLLHAAVALGLLPISAFALTEADIDEAIRKPSWGLYKGYAEFKMAHYDDAKRIWTVLAERGSGEAWFNLGILAEDGLGEPRDPQQARHRYEQGALAGSRNAALRLGLLLQTSKLGAADPDGARRWLKVAADGGDQEAVTQLAALSGDAPGGSAADRALADARKLEADGRHGDAVSQYRTLADAGDPRGVTRLAWAYESGRGVSRDLAEAARLFRVAAEKGEAEAQYALSVMLETGAGQSRNSDESLRWLRSSADQKYPPAVEALQARK
>NZ_CP016448.1|WP_069038018.1|908706_910851_+|4Fe-4S-binding-protein
MTSSLFDPIRFVLAAAFACALSLVLSCVPAFAGDMTLEALSARFPPPLHVQPKLADIPAWPITSELEPEGGPIGYVFESIDLAPIPGFEGTPMNLLVAIDRKGNFIDVSVLRQHEPVFLSGLGEAPLNEFVRQYAGKNLRQDFTVSSAYGNTKAGAADNRVVLDGVTKATASVRIVNQTALAAGLAVARARLGFADPGTRGPPAEVRSDTYEALDFAALVERGLIGRLRVTHAEAEKLFAGTEGEGADEDALRSPGDTLIELYVAYLNLPTVGRTVLGEARYADLMKKLEPGQHALWFASTGHDAVLDDSFVPGTAPPKLQLTQGGYPAEMRDLVFEHPAPAGAPAFNASGVFRVYAASNLDPAQALQVTLTLTRAKGIMLPRITNQTVALDYALPERLFVYPPKPLPEWLIAWQGRWPDLALIGAALVLLSVVLAKPQWMAKDARRLVWFRSSFLLFTLVFIGWYAQGQLSIVQITGAIKTLVAGQSLKSFLYDPVSLLIIGFTLVSFFIWGRGTFCGWLCPFGALQEFVAMAAQKLRVPQIRLPALLARVLDRGRYVILLVLVVAAGVTPDLATGLVEVEPFKTAITVGFDRTWPYVAWAVGLLLAGAFSYKFFCRYVCPLGAAMALGGKLRRFDWLARRVECGKPCQTCRHRCQYDAIERSGAIRYDDCFQCLDCVGIHADEKRCAPVLLYAKKGRTVKPFPLPVRVEGGA
>NZ_CP016448.1|WP_069038019.1|910851_911301_-|molybdopterin-synthase-catalytic-subunit-MoaE
MSVSVREADFDIGAEIDALLAGRTDVGAVATFTGLVRDMNDGAGVRAMTLEHYPGMTEAALEDIVVEAKSRWDILAARVIHRVGPLMPADRIVLVIVAGSHRGEAFAACEFIMDYLKTRAPFWKREDTPDGSRWVDARDSDDSAARRWD
>NZ_CP016448.1|WP_069038020.1|911314_911578_-|molybdopterin-converting-factor-subunit-1
MSQKTIKVLYFAALREALGTPGETLELPDDCTTLADVRALIAGRGGDWGALAQMKNLRAAINQRMTDPASPVADGDEVAFFPPVTGG
>NZ_CP016448.1|WP_069038021.1|911581_912799_-|molybdopterin-molybdotransferase-MoeA
MNEMLTLDAALARLLASARPIGDTETVSTFHAAGRVLARDQRSAITVPPHDNSSMDGYAVRVADLESVGDCLPVSQRIPAGHVGAPLAPRTCARIFTGAPVPAGADAIVMQEATRIVDAGVCFDEIPKTGAWIRRAGEDIRAGDTVLAAGSRLRAQEVGLAASVGLADLPVVRRPRVALFSTGDELVMPGQPLPPGAIYNSNRYLLRALCEALGCEVLDLGIVPDRLDATRAALREAAATCDVILTSGGVGVGEEDHIKPALEAEGALDSWKIAMKPGKPLAHGHVKRSDGSTADFLGLPGNPVSSFVTFLLLVRPFILRRMGVQDVTPLPFTVRADFDWPKPDRRREFLRVRRTATGGLELFDNQSSGVLTSTVWGDGLADIAAGLTIARGDAVPFLSFESLLY
>NZ_CP016448.1|WP_069038022.1|912795_913290_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MKVFGFAGYSGSGKTTLIEQLIPHFVLEGLTVSLIKHAHAGFDIDRPGKDSFRLREAGCTEVLLTSNNRWVLMHELRGREEPSLDQQIAALSPCDLVLVEGFKASPIPKLEVHRPSHDRPLMYPDNPHVVAVATDVPMELPLPRLDLNDVEAIAGFILRHQGFR
>NZ_CP016448.1|WP_069038023.1|913570_914365_-|ABC-transporter-ATP-binding-protein
MSKVIVKVENAGMSFDTKKGKFVALRDIDLTIAEGEFVTLIGHSGCGKSTLLNLIAGLTLPTSGNLFCDGREIAGPGPERAVVFQNHSLLPWLTCRENVLLAVERVFGKKEGKGKLKARAEAALEMVHMDHALDKLPHEISGGMKQRVGIARAFAMEPKILLMDEPFGALDALTRASLQDELNGVMEKTGATVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEILEVKLARPRDRLKLAHDHDFVEYRAALLEFLYQKQVKKAA
>NZ_CP016448.1|WP_069038024.1|914386_915310_-|nitrate-ABC-transporter-permease
MSAAIITSDKVVPMTTSSAATPVRAANEAVPIAPPVVAVAPREPRTPVSEILLNIFKAVFPPIAGMVLLIAVWALLAGTGGSIPGPLPVWEAAKVLFADPFYNNGPNDLGIGWNVLSSLQRVGIGFGFAALVGIPLGFIIGRFAFMNAMLDPIISLLRPVSPLAWLPIGLLVFKQADPAATWTIFICSIWPMIINTAVGVQRVPQDYMNVARVLDLSEWKIVTKILFPSVLPYMLTGIRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLKVEHIIIAIFVIGIVGLLLEQFLLLLARRFSYGNS
>NZ_CP016448.1|WP_069038025.1|915363_916665_-|ABC-transporter-substrate-binding-protein
MADHPKQADSAQAPGIIETPDKRRSFLRQGVALGAGAALMSMVPPGVRSGAWAAGSDAPEKKEVRIGFIPLTDCSSVVMAAVEKFDEKYGIKIIPSKEASWAAVRDKLVNGELDAAHVLYGLVYGVHLGIGGPKKDMAVLMNLNNNGQAITLANKLKDQGVTDGTSLKKLLTSKPGDYTFAQTFPTGTHAMWLYYWLAAHDINPMKDVKVITVPPPQMVANMRVGNMDGFCVGEPWNNRAIIDKIGFTSVTTQDIWTDHPEKVLGTTADWVSKNPNTARAMTAAILEAGKWIDASLVNRRKTAEVVATKSYINTDMDVILERMLGRYSNGLGKSWDDKNAMKFFNDGAVNFPYLSDGMWFLTQHKRWGLLKSDPDYLAVAKAINRIDIYKQAATAAGAPLPKSDMRSHKLIDGVTWDGKEPQKYAGSFKINAA
>NZ_CP016448.1|WP_069038026.1|917037_917619_-|ANTAR-domain-containing-protein
MAVLNVLVVDESRKRAAEICAGLACAGYQVAAVLSSAYDLHLRVEELKPDVILIQTDSPSRDTLEHMAAMDREKPRPVIVFANESDSKTIRRAMKAGVSAYVVDGLEAKRIKPIIDVALAQFEEHQELRRARDEARQKLSDRITIDRAKGVLMKLRGIEEDAAYHTLRKLAMERGKTIAAVSEDLLATARLLG

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Crispr_ID: NZ_CP016448_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_3

946735-946841

Orphan

Consensus_repeat	Method
GTTGGGCATCGCTGCGCTCACCCCAACCTACATGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_3

>merge|NZ_CP016448|3|946735-946841|CRISPRCasFinder
GTTGGGCATCGCTGCGCTCACCCCAACCTACATGCCTGACGCAACGACGCGATGACTGGCGGAGCTGGGTTGTTGGGCATCGCTGCGCTCACCCCAACCTACATGCC

>NZ_CP016448|3|3|946735-946841|CRISPRCasFinder
GTTGGGCATCGCTGCGCTCACCCCAACCTACATGCC	TGACGCAACGACGCGATGACTGGCGGAGCTGGGTT
GTTGGGCATCGCTGCGCTCACCCCAACCTACATGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_083223912.1\|934133_935030_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP016448.1\|WP_069038040.1\|939372_939630_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340594
NZ_CP016448.1\|WP_069038050.1\|952614_953268_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|365838
NZ_CP016448.1\|WP_069038041.1\|939652_940822_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|374209
NZ_CP016448.1\|WP_083223918.1\|954941_955652_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|370644
NZ_CP016448.1\|WP_069038044.1\|945319_945739_+\|thioredoxin-TrxC	unknown	unknown	gnl\|CDD\|182889
NZ_CP016448.1\|WP_069038042.1\|940996_942055_-\|PHB-depolymerase-family-esterase	unknown	unknown	gnl\|CDD\|313683
NZ_CP016448.1\|WP_069038049.1\|950653_951538_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP016448.1\|WP_069038043.1\|942431_945164_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP016448.1\|WP_069040446.1\|951757_952525_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|227259
NZ_CP016448.1\|WP_069038046.1\|946436_946628_-\|YjfB-family-protein	unknown	unknown	gnl\|CDD\|379452
NZ_CP016448.1\|WP_083223915.1\|947559_948162_-\|2-hydroxychromene-2-carboxylate-isomerase	unknown	unknown	gnl\|CDD\|239320
NZ_CP016448.1\|WP_083223916.1\|949579_950578_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP016448.1\|WP_083224116.1\|948172_949036_-\|methyltransferase	unknown	unknown	unknown
NZ_CP016448.1\|WP_069038045.1\|945820_946279_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_083224117.1\|953446_954469_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP016448.1\|WP_069040444.1\|949056_949473_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|376462
NZ_CP016448.1\|WP_190295052.1\|936209_937907_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NZ_CP016448.1\|WP_069038039.1\|938210_939086_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NZ_CP016448.1\|WP_069038047.1\|947150_947582_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_083223912.1\|934133_935030_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	7.53815e-15
NZ_CP016448.1\|WP_069038040.1\|939372_939630_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	2.59239e-19
NZ_CP016448.1\|WP_069038041.1\|939652_940822_-\|glycosyl-hydrolase	gnl\|CDD\|374209	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,. Sortilin, also known in mammals as neurotensin receptor-3, is the archetypical member of a Vps10-domain (Vps10-D) that binds neurotrophic factors and neuropeptides. This domain constitutes the entire luminal part of Sortilin and is activated in the trans-Golgi network by enzymatic propeptide cleavage. The structure of the domain has been determined as a ten-bladed propeller, with up to 9 BNR or beta-hairpin turns in it. The mature receptor binds various ligands, including its own propeptide (Sort-pro), neurotensin, the pro-forms of nerve growth factor-beta (NGF)6 and brain-derived neurotrophic factor (BDNF)7, lipoprotein lipase (LpL), apo lipoprotein AV14 and the receptor-associated protein (RAP)1.	0.00321397
NZ_CP016448.1\|WP_069038044.1\|945319_945739_+\|thioredoxin-TrxC	gnl\|CDD\|182889	PRK10996, PRK10996, thioredoxin 2; Provisional.	4.2174e-43
NZ_CP016448.1\|WP_069038042.1\|940996_942055_-\|PHB-depolymerase-family-esterase	gnl\|CDD\|313683	pfam10503, Esterase_phd, Esterase PHB depolymerase. This family of proteins include acetyl xylan esterases (AXE), feruloyl esterases (FAE), and poly(3-hydroxybutyrate) (PHB) depolymerases.	4.19798e-44
NZ_CP016448.1\|WP_069038049.1\|950653_951538_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	8.58388e-17
NZ_CP016448.1\|WP_069038043.1\|942431_945164_+\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	3.00064e-16
NZ_CP016448.1\|WP_069040446.1\|951757_952525_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|227259	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown].	6.52371e-15
NZ_CP016448.1\|WP_069038046.1\|946436_946628_-\|YjfB-family-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	4.86654e-10
NZ_CP016448.1\|WP_083223918.1\|954941_955652_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|370644	pfam09735, Nckap1, Membrane-associated apoptosis protein. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerization in the brain as part of a WAVE2 signalling complex.	0.00494485
NZ_CP016448.1\|WP_083223916.1\|949579_950578_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	5.37246e-59
NZ_CP016448.1\|WP_069038050.1\|952614_953268_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|365838	pfam00052, Laminin_B, Laminin B (Domain IV).	2.25854e-23
NZ_CP016448.1\|WP_083223915.1\|947559_948162_-\|2-hydroxychromene-2-carboxylate-isomerase	gnl\|CDD\|239320	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).	7.03464e-61
NZ_CP016448.1\|WP_083224117.1\|953446_954469_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.45319e-27
NZ_CP016448.1\|WP_069040444.1\|949056_949473_-\|MAPEG-family-protein	gnl\|CDD\|376462	pfam01124, MAPEG, MAPEG family. This family is has been called MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism). It includes proteins such as Prostaglandin E synthase. This enzyme catalyzes the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.	1.20776e-09
NZ_CP016448.1\|WP_190295052.1\|936209_937907_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.16567e-28
NZ_CP016448.1\|WP_069038039.1\|938210_939086_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	9.7701e-172
NZ_CP016448.1\|WP_069038047.1\|947150_947582_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.92547e-15

>NZ_CP016448.1|WP_069038046.1|946436_946628_-|YjfB-family-protein
MDVSAIASTATALSQARVVDAAGTLVLKKALDIQAASALQLLQALPAPVPARPSGAHLIDTYA
>NZ_CP016448.1|WP_069038045.1|945820_946279_-|hypothetical-protein
MKSCWISVAAIGLLSAAPAHAIDAKYARQLERSGCTQVSELQGCDITKTRAENAAAGFGTAAPAPAGAGPATPYAGQWVARAADGSTFATLRIDLRERVWVNGKRVKAKRSDGALVFRDGPVLFTIQGDRRLVGEDTWADFDAGTKGVIVAE
>NZ_CP016448.1|WP_069038044.1|945319_945739_+|thioredoxin-TrxC
MLIVCQHCSTTNRVADERLDDQPVCARCKKPLLAAEPFALDDQTFARYVQTTELPVVVDFWADWCGPCKVMAPQYAAAAAQLPRVRFAKVDTEQAQNTAAQFRIRSIPTLLLMRGGHEIARRSGAMSAADLLRWIRSVT
>NZ_CP016448.1|WP_069038043.1|942431_945164_+|autotransporter-domain-containing-protein
MHHHSFKARAGRWTVSAAFVLCTALPAGRAIAACNGGVTVTSSIVIGANCDGGSTTPLRMNTGANVTINSGVTVSNNAGSGRNGDPISVLSTSTSATLTNNGNIYTAAQWAITNNGTLDTLINTGTIASGVRRAIVNNGGTIGTITNTGTVSGPFADITASGGSIGTLNNLQGAGNAGGALTYAGDLPTRYNIIINAPGTYGVLAGAGVSGATMFGIHGTSTVATGTYSGVLTGMAAANLSGATSGSFGGLAWALNLASGSSTVWDLIFAPASTDITTGGTFTLDSVGVTTNPVFDGGTLTLAADDASAQAFAVGGSGGTLTSPTGGSATLSGVLSGAGGLTIAGTGRLTLSGLNSYGGGTTIASGTVAIDGDSALGSGAVFVAPGAVLMGTGTIAGPVTVAGTFKPGNSPGFIAVNATVAQNTGSTYQQDIAGTVQAASTTPAGATGFYSFLEITGGQFVIQPGATLTPQLLNLFTPGEPGFGSAPHVPALGERFRIISADSGITGRFTTLTQPAGLAAGTQFAAFYDVAGSRSIDLLVIPLSYRSVLADGSANARSAGDALDRLVELNLAGTAGVAQTTLLQAAATQGATALPSFARSLAGETHGASLAMVPQATRRLQQTVLAQVDSVARTGNRVWGGITYQGGNRSGDENASGFSSHLYQLAFGADMHTADGHTLGAGFALSTTRVSARSGSGTVQQGTIFAYGQRPVSDWVLDGMASIGLSSTDNTRNDPLGSATALDANDIHGGDALVSLGIGRAHDVAPGRVTPYARLTWQHVRQSAFNEGDSAAALGVRRFSDDGVRAVLGVSLASAPTFASSDPAAQRFTYRAHLGVGADTSGLIQPRLNTTLAGVAMTLRTPDVGKTFVQAGVSASARVATHTVVELGLAGEIRQGAVLGNINLDLIVRF
>NZ_CP016448.1|WP_069038042.1|940996_942055_-|PHB-depolymerase-family-esterase
MAKRSWTSIFTRSMTRSLATLQRSALRSALPATRRALKAVTPTVARVKPVARGRTAVKAPGKGATAAGQWLPGVAIGPSGARRYRLYRPAGIRPGERVPLLVMLHGCGQDAKGFADSTRMNRIAAREGFLVLYPEQERLANAQGCWNWFDTRSGRAWGEVALIMAAIDQVCTLYPADLERVAVAGLSAGASMAALLVTRHPTRFRALVMHSGVPPGSAHSTLSALGAMRGRRPAAALPAVPMALTVNLPPLLVIHGGRDAVVAPGNGDTAAQGWADAAGASAGAPRTMQRGKRHPMTVTDFRLRGRTVVTQIGIPGLAHAWSGGAASEPYGDAKGPDASRMVWAFAARQFKS
>NZ_CP016448.1|WP_069038041.1|939652_940822_-|glycosyl-hydrolase
MSSDHTRVRPPGPTRQVTLLVATRKGAWFYHGDPERGSWRTDGPHFLGHVISHVVLDPRDGRTLLAAAKTGHLGPTIFRSTDFGANWTEAARPPAFARAEGGAGRSVDHTFWLAPGPAVEPGVWYAGTSPQGLFRSDDGGVSWAPFSCINDHPDYLKWMGTVQDGTPDGPKLHSIIVDPRDPSHLYFAMSGGGVHESLDGGRSFAPLIDGLDVVEGFDASQPTFHDPHCVRLCPTNPDRLYQQNHCGIYRLDRPDTRWRKIGDTMPSEVGEIGFPMVVHPRDADTAWVFPMDGTSVWPRTSPDGRPAVYATRNAGASWQRLDAGLPKAQAWWTVKRQAMTADGQDTIGLYFGTTSGELWASRDEGAHWTCIAQHLPDIYAVEVAERPAP
>NZ_CP016448.1|WP_069038040.1|939372_939630_-|MoaD/ThiS-family-protein
MRVLIPSALRAYTESAHAEASGATLADVLDALDGQYPGIRFRMIDEQGRIRRHIRIFFDGEQVRDLAQPLRADGELIIVQALSGG
>NZ_CP016448.1|WP_069038039.1|938210_939086_-|phosphatidylserine-decarboxylase
MSSSDLHDRLFVRLQHVLPKQALTRFAEFVANSRAPWTRGIIPWFIRKYGVDMSEAADPDPTHYACFNDFFTRALRDGVRPLADAPFVSPVDGSVIDCVTLRDATILQVKGHAYCAQALVGGDAALAAPFEGGEAISIYLSPKDYHRIHMPCDGRLRRMIHVPGTLYSVNPATVAGVPGLFARNERVVCLFDSAFGPFVLTLVGAMAVGSMQTVWHGLINPPRPGTLRDWRYDEQDIRLARGEEMGRFLLGSTVVMLFPKNVLRARADWTPGRSVRMGEEMAEAMAAAPGR
>NZ_CP016448.1|WP_190295052.1|936209_937907_-|mechanosensitive-ion-channel
MIARRIAFRCLRLFFLICAATGSAGAFSQAPDAPPAPVIAPDRPVFELSRGGSVDVEEDTLFVNRRRIVTFRATLLDDAPAVRAQQAEATLERMLAGGGPAAITLMREGATASLKFDGERVFHLVADDVGPSSGLSFNAAAEEVQRRLQAAVLEVREKGDARRIGQGLAWSAGATLLALLLLKGVFWLRRKLAERLDRRLAAWQQDRSAGDLLAAYAEHARRVLNAVSRGLSWLAAVLLIDAWLTFVLHQFAWSRPWGERSTAWLLDVLAQFAWAIAGAIPGLVIAVLIFLLARVSSRALGALLERVESGEARVAGLDVDTAGPTRRLGNLIIWLFALAMAYPYLPGSHSEAFKGVSVLAGLMLSLGASSIVGQVLSGFSLMYSRSLRPGEYVKAGETEGTVMNIGLFATRIHTGMGEEVSIPNAVMFSHPVRNFSRLVTDGHFVVHTTVTIGYATPWRQVHAMLLEAARRTPGVAQTPLPYVLQTALSDFYVEYRMCAQIDKSAPARRAEALNQLHGNIQDVFNEYGVQIMSPHYMADTPTPQVVPPSGWWPSPAQPPHEPERV
>NZ_CP016448.1|WP_083223912.1|934133_935030_-|hypothetical-protein
MAEADAKKGAKKASAPSKAAAKPAAKKAAPVKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKVAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKAAAKPAAKPAAKKAAPAKATAKPAAKPAAKKVAAPAATKVVSKSSDPAPAPAAPAPATPSTAATPGIKSSLNPAAAWPFPTGSRPS
>NZ_CP016448.1|WP_069038047.1|947150_947582_-|PaaI-family-thioesterase
MPPLVAPDDDSAPAGFTPRVLRGPFFGGRTVFTGNAGHTDHFTFRITGDDCNRLGITHGGVIATLADIFIVGFIAAQLPSDTRMVTASLSVDYLGPSTAGDWLVGRIHAHRIGRRQCVASGEFRVGDRTIALIKASCAILSDA
>NZ_CP016448.1|WP_083223915.1|947559_948162_-|2-hydroxychromene-2-carboxylate-isomerase
MNDPHLEYWFDFASPYSYLSTLRIEALARARGVKVLWRPLLLGPIFRSAGWESSPFLQQPVKFAWMWTDLARQCARHALPWRKPSQFPRNGLLPARIALANSNAPWIATFCARVFELNFVHDTDINDVEAIQRVLNELGLPAADLIAQSQSPEVKQALREQTEQAAQRGLFGAPSFFVGDALYWGNDQLEDALDATARRA
>NZ_CP016448.1|WP_083224116.1|948172_949036_-|methyltransferase
MTHDEGVLHPDSAQPAPTVGGLDYLQDSAGAPVNYMYPPPDGEPWENCSYRTHRVVIVDARPAAKDFLLERHGFELRDVPTGLARFDDDECIRARYYPEVEAIACEATGAKRALCFDHQIRRRSRGEQHLTFGRQNAQASAVGRVHNDYSEASGLARLGLVLRDDAARSRVRRYAVVNVWRPLIEPVVDAPLAMCDARSVMAQDLVAAEIRYPGRSGEIYLLKHSPQHRWHYFSDMAMSEVLVFKQYDSQASGVSRFTPHAAFLDPAAPVDAPLRASIEARCLVLFD
>NZ_CP016448.1|WP_069040444.1|949056_949473_-|MAPEG-family-protein
MSPSLLAMLLYATLTLLLLVAIAALRTTLVVTRQRAADAFTPAGDDVSPFSGRLCRAHANCCENLPVFAALVLAAALSGHAGITDSTALWVFAARVGQTVTHLSSGRRRAIRLRFLFMLVQIALLTSWVVRLLWVSVQ
>NZ_CP016448.1|WP_083223916.1|949579_950578_+|helix-turn-helix-domain-containing-protein
MDNMKTAVLILPGVLDISLGITLDVMNTANRLCVLAKRPALFDITLAGSGRRRERSGSGLEVGPLERMADLPPPELLLLPGANRASRSELEDWLATREVMKAMDRAGDWLDAGTQVAASCVSTFALAQAGLLDGRVATTSWWLAPWFRERFPRVDLDMARMVVRDGAISTAGAALAQADLMLSLVARHGSEELARSCARFLMLDHRVSQSQYAIASHLVSQTPTLQRADHWLQARLGEPVTLALLAEALHMTPRTLSRHFASAVGMSPIRYVQKLRVERATQLLETGLASIESVAAQVGYADASMLRKLLRRERGLSPRRVRPQSRGPAAQG
>NZ_CP016448.1|WP_069038049.1|950653_951538_-|AraC-family-transcriptional-regulator
MSTTAQVRDTHFDNARLSEIGVEVLSLDALRSRVTADRLAEAERVDFLIVLLISEGACEHLIDFQPVRLAPGAVVVVRPGQVQQWRLHPGVHGLLLLVDTRLAQLAASALADPAFQLLQIDEWPAAFVLSAEDQRDGEALTRVLERQLDRDRVDDVSARLARELFLSLMVLLSRAARIAAPARTAQERLFQRLQRDLDASATTRPTVDAIARRLRVSPSTLSRVCLDRVGMSAKAFIDRRTALEAQRLLVHTGATTTAIGEAMGFSEPTNFLKFFKRVVGMTPDSFRRRYRPSA
>NZ_CP016448.1|WP_069040446.1|951757_952525_+|nuclear-transport-factor-2-family-protein
MTTDRKTQVVALLKAIETGESAPVAVINPDRYVQHNLAVSDGLAGFGAALAALPKGSARVNTVRVFQDGDYVFTHTDYDFFGPKIGFDIFRFENGRIVEHWDNLQPTPVAPNPSRRTMIDGPTAIIDLDRTDANKKLVAAFVDDVLVNGRLDRLAGYFDGDHYRQHNPQIADGLSGLGAALESLARAGITMKYHTVHKVLGEGNFVLTVSEGEFAGKPTAFYDLFRVENGRIAEHWDTLETIPPRAEWKNGNGKF
>NZ_CP016448.1|WP_069038050.1|952614_953268_-|PEP-CTERM-sorting-domain-containing-protein
MTESHLRVSALALLLAASFPAHAVTSTFDTDAEGWSAQGDVERPLTWSGTDGNPGGNVFIDDLTTGGVTYFVAPAQFHGNFAGAFGTQLTFDLMQRYPGSPNQFNAEDVILQGGGLTVVYNTASNPANNAWTSYSVPLSATGWRLGNLSGSAPTDEQFLAVLSNLSSLKIRAEYQTGSDIGHLDNVSLVPEPGTAVMLLCGLGFIAFAAGRKARPAG
>NZ_CP016448.1|WP_083224117.1|953446_954469_-|alpha/beta-hydrolase
MRLSVLLCAVLLPLCLPARAAEDRAAEDLSKLSYDARLTGYAYAFGVKFFPIVSQGQSLEMAYIHLPGEAGKPVVTLLHGKNFNADYWASTARHLQKQGYGVLMPDQIGFGKSSKPMQYQYSFPALANHTRALMTSLGIEKAIVVGHSMGGMLASRFALMFPQAVQQLVLVNPIGLENYLKYAEYKDTDFFYKAEQAQTAAGIAKYQRESYYAGEWNDRYAALTHFLVGQLQGPDKAQVAWVNALTYDMIFTQPVVTEFGDLSVPVSLIIGTRDRTGPGRGWMRAGVDYEPGRYDRLGKTAAALIPGAVLYELPDLGHMPQIENFDVFTGVLDKALAGRR
>NZ_CP016448.1|WP_083223918.1|954941_955652_+|PEP-CTERM-sorting-domain-containing-protein
MDNVLGAVLARRCPAHSSSCADAHHHFSHHIRITVMLLFKKLALTSALVISCGLTQAATPTVAYEFTESFVGNVTYDWNTFPMERYEDFVLAPEGSDLPSLLQSATQHTFTPFYAPASGQTYCYDEGGCALTGGNAHGSYTGLYWVDYFKEIAGSNTVYEYAGWFEYTGGTGVFEGITGGGTFIGRETYPSPFDQVLSKTVQGNFALPVPEPETWALMVAGLALVAGMLRRVRMPI

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Crispr_ID: NZ_CP016448_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_4

960372-960479

Orphan

Consensus_repeat	Method
GTAGCCGCCGCGCTCTTCGGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_4

>merge|NZ_CP016448|4|960372-960479|CRISPRCasFinder
GTAGCCGCCGCGCTCTTCGGCCAGGATGTCGAGCGAGTCGTGCGGCAGGATGCCGCGGTCCCACAGGCTGCCCTTGTAGCTGGCGTAGCGGCCGCGCTCTTCGGCCAG

>NZ_CP016448|4|4|960372-960479|CRISPRCasFinder
GTAGCCGCCGCGCTCTTCGGCCAG	GATGTCGAGCGAGTCGTGCGGCAGGATGCCGCGGTCCCACAGGCTGCCCTTGTAGCTGGC
GTAGCGGCCGCGCTCTTCGGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069038050.1\|952614_953268_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|365838
NZ_CP016448.1\|WP_069038057.1\|962773_963319_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP016448.1\|WP_083223919.1\|957093_958173_-\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP016448.1\|WP_069038062.1\|968590_968854_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP016448.1\|WP_069038058.1\|963568_964918_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP016448.1\|WP_083223918.1\|954941_955652_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|370644
NZ_CP016448.1\|WP_069038049.1\|950653_951538_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP016448.1\|WP_069038065.1\|971189_972659_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP016448.1\|WP_069038063.1\|968986_970078_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP016448.1\|WP_069040446.1\|951757_952525_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|227259
NZ_CP016448.1\|WP_150123879.1\|956511_956916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069038060.1\|966490_966733_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069038053.1\|956042_956426_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|224404
NZ_CP016448.1\|WP_069038061.1\|968228_968540_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP016448.1\|WP_069038064.1\|970061_971177_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP016448.1\|WP_083224117.1\|953446_954469_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP016448.1\|WP_069038052.1\|955842_956046_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|378324
NZ_CP016448.1\|WP_069040448.1\|967117_968047_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182813
NZ_CP016448.1\|WP_069038055.1\|958340_959594_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NZ_CP016448.1\|WP_069038059.1\|964887_966513_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069038050.1\|952614_953268_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|365838	pfam00052, Laminin_B, Laminin B (Domain IV).	2.25854e-23
NZ_CP016448.1\|WP_069038057.1\|962773_963319_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	8.09877e-109
NZ_CP016448.1\|WP_083223919.1\|957093_958173_-\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	2.24631e-32
NZ_CP016448.1\|WP_069038062.1\|968590_968854_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	4.83932e-51
NZ_CP016448.1\|WP_069038058.1\|963568_964918_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.24118e-173
NZ_CP016448.1\|WP_083223918.1\|954941_955652_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|370644	pfam09735, Nckap1, Membrane-associated apoptosis protein. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerization in the brain as part of a WAVE2 signalling complex.	0.00494485
NZ_CP016448.1\|WP_069038049.1\|950653_951538_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	8.58388e-17
NZ_CP016448.1\|WP_069038065.1\|971189_972659_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.50704e-44
NZ_CP016448.1\|WP_069038063.1\|968986_970078_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP016448.1\|WP_069040446.1\|951757_952525_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|227259	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown].	6.52371e-15
NZ_CP016448.1\|WP_069038052.1\|955842_956046_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	0.00945241
NZ_CP016448.1\|WP_069038053.1\|956042_956426_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|224404	COG1487, VapC, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	1.12329e-05
NZ_CP016448.1\|WP_069038061.1\|968228_968540_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	2.6559e-53
NZ_CP016448.1\|WP_069038064.1\|970061_971177_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP016448.1\|WP_083224117.1\|953446_954469_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.45319e-27
NZ_CP016448.1\|WP_069040448.1\|967117_968047_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182813	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.	4.06887e-129
NZ_CP016448.1\|WP_069038055.1\|958340_959594_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NZ_CP016448.1\|WP_069038059.1\|964887_966513_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	8.68035e-44

>NZ_CP016448.1|WP_069038055.1|958340_959594_-|ribonucleotide-diphosphate-reductase-subunit-beta
MLSFEDDLPVNTPQPGLGLRTATAEPAATGFAPRAGAAPVGAAARRDMYADPLPIHAPIAELPIAPRAPAPAATESTRMRRIRAEDKRVINGGTDVNQLVPFKYKWAWDKYLSGCANHWMPQEVNMQRDIELWKTPNGLTDDERRLIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEVFNAYHEVQSIRDKDEFLIPFIDVLTNPMFKTGTPETDQQLLKSLIVFACLMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTVEFREELKTLFRKAVELEYRYAEDTMPRGVLGLNSAMFKEYLRFIANRRAQQIGLDVLYPGAENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD
>NZ_CP016448.1|WP_083223919.1|957093_958173_-|DUF4238-domain-containing-protein
MSPVDFCVRNHYVPEHYLKRWAAGTPKVWTYRLLVPHANVRSWKQHSIETIAKREHLYTRLRDGRDSDEMERWFSIDFESPANVVIEKILVGRAVSPTEWRRLARFVALQDVRTPARMTEIVNRAAEYLPSMLEEVLEGAVKDLAMMPENRPALRIGEDSESVSIPISMRTEFKPGARTGKLILETIAGRAYWLYAIEMLLTKTVKCLEEHRWTVVRPPDGMKWLTSDNPVVKLNYYGDETFDLGGGWGRDGSEIFLPLSPDCLLYTHVGRKPAFRRGEKLPNNIAVKIQCLIIKNAHRYIFSEDMDPDMCMLRPSVVDREIVRSEQKSWAEFHISQTTAELDLYAKGLKTKKTGEVAG
>NZ_CP016448.1|WP_150123879.1|956511_956916_-|hypothetical-protein
MIHILKMTIKTLTGVTPAEALVATKYESARQLRDRTKTLARKALGEGTALIKLQALVNTCESLTEKRNDLVHGLWAKELDGDAHIRDAYGNEHPVPTIAELKALANDIDAHTQHLNRERLEGFLLEALRKRSNA
>NZ_CP016448.1|WP_069038053.1|956042_956426_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSGILVDASVWVDHFRHGNDSLIQLLDSDLVLIHPLIIGELACGTPPSRAQTLTDLASLQPARQASAAEVLAFINREHLFGLGFGIVDMHLLASTLITQGARLWTLDKQLDMLAERFGVTRRMERTE
>NZ_CP016448.1|WP_069038052.1|955842_956046_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MRTTVTIDDALYERALEVADPSMDKADLFREAIKTYVRVQSARRLAALGATQPDMPDIPRARADAPQ
>NZ_CP016448.1|WP_083223918.1|954941_955652_+|PEP-CTERM-sorting-domain-containing-protein
MDNVLGAVLARRCPAHSSSCADAHHHFSHHIRITVMLLFKKLALTSALVISCGLTQAATPTVAYEFTESFVGNVTYDWNTFPMERYEDFVLAPEGSDLPSLLQSATQHTFTPFYAPASGQTYCYDEGGCALTGGNAHGSYTGLYWVDYFKEIAGSNTVYEYAGWFEYTGGTGVFEGITGGGTFIGRETYPSPFDQVLSKTVQGNFALPVPEPETWALMVAGLALVAGMLRRVRMPI
>NZ_CP016448.1|WP_083224117.1|953446_954469_-|alpha/beta-hydrolase
MRLSVLLCAVLLPLCLPARAAEDRAAEDLSKLSYDARLTGYAYAFGVKFFPIVSQGQSLEMAYIHLPGEAGKPVVTLLHGKNFNADYWASTARHLQKQGYGVLMPDQIGFGKSSKPMQYQYSFPALANHTRALMTSLGIEKAIVVGHSMGGMLASRFALMFPQAVQQLVLVNPIGLENYLKYAEYKDTDFFYKAEQAQTAAGIAKYQRESYYAGEWNDRYAALTHFLVGQLQGPDKAQVAWVNALTYDMIFTQPVVTEFGDLSVPVSLIIGTRDRTGPGRGWMRAGVDYEPGRYDRLGKTAAALIPGAVLYELPDLGHMPQIENFDVFTGVLDKALAGRR
>NZ_CP016448.1|WP_069038050.1|952614_953268_-|PEP-CTERM-sorting-domain-containing-protein
MTESHLRVSALALLLAASFPAHAVTSTFDTDAEGWSAQGDVERPLTWSGTDGNPGGNVFIDDLTTGGVTYFVAPAQFHGNFAGAFGTQLTFDLMQRYPGSPNQFNAEDVILQGGGLTVVYNTASNPANNAWTSYSVPLSATGWRLGNLSGSAPTDEQFLAVLSNLSSLKIRAEYQTGSDIGHLDNVSLVPEPGTAVMLLCGLGFIAFAAGRKARPAG
>NZ_CP016448.1|WP_069040446.1|951757_952525_+|nuclear-transport-factor-2-family-protein
MTTDRKTQVVALLKAIETGESAPVAVINPDRYVQHNLAVSDGLAGFGAALAALPKGSARVNTVRVFQDGDYVFTHTDYDFFGPKIGFDIFRFENGRIVEHWDNLQPTPVAPNPSRRTMIDGPTAIIDLDRTDANKKLVAAFVDDVLVNGRLDRLAGYFDGDHYRQHNPQIADGLSGLGAALESLARAGITMKYHTVHKVLGEGNFVLTVSEGEFAGKPTAFYDLFRVENGRIAEHWDTLETIPPRAEWKNGNGKF
>NZ_CP016448.1|WP_069038049.1|950653_951538_-|AraC-family-transcriptional-regulator
MSTTAQVRDTHFDNARLSEIGVEVLSLDALRSRVTADRLAEAERVDFLIVLLISEGACEHLIDFQPVRLAPGAVVVVRPGQVQQWRLHPGVHGLLLLVDTRLAQLAASALADPAFQLLQIDEWPAAFVLSAEDQRDGEALTRVLERQLDRDRVDDVSARLARELFLSLMVLLSRAARIAAPARTAQERLFQRLQRDLDASATTRPTVDAIARRLRVSPSTLSRVCLDRVGMSAKAFIDRRTALEAQRLLVHTGATTTAIGEAMGFSEPTNFLKFFKRVVGMTPDSFRRRYRPSA
>NZ_CP016448.1|WP_069038057.1|962773_963319_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MIEHAIDADGWCAAARRVDSPNRDARPDDTAVSLIVLHSISLPPGDFGGPWIEHLFTNRLDPSAHPYFFDISVLRVSSHFVVRRDGELLQFVSTLERAWHSGVSSWQGRSRCNDFSVGIEFEGCNVLPFEAAQYARARALIGALRQRHPIADVVGHSDVAPGRKTDPGACFDWSAVGIPRP
>NZ_CP016448.1|WP_069038058.1|963568_964918_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MERRRSQLELKVLVVDDEDDLRELIDMSLARMGLHASLAGTVAQARDFLAREQFALCLTDMRLPDGEGMDLVRHIAEHHRDLPVAVITAYGSMDNAVAALKAGAFDYLAKPVSIEQLRALVRSALDLPGRNAASPAQGADALVGDAPALVHVRDMITKLARSSAPVNIQGESGSGKERAARLIHELGARRAGPFIAVNCGAIPETLVESEFFGYTKGAFTGADADREGHFQAAKGGTLFLDEVGDLPLSMQVKLLRAIQEKSVRRVGARSEESTDIRLISATHRNLKQMVDDGRFRQDLFYRLNVLELRMPSLRECRESIPQLAQTLLDRIAAPDHAHPVLTRAAIDALCAYPFPGNVRELENVLERAYALSAEAQIDAADLGLMPADDDAPADPAGELPLQDYLDRMERAAIEDALRKTRYNRTAAARLLGVTFRSLRYRLQRLGINE
>NZ_CP016448.1|WP_069038059.1|964887_966513_-|PAS-domain-containing-protein
MRPTTVADTAADDDSVSLSSLTPLRYFSLYRLLMTSVLLAIVLGFAGDISFGRYNEALFSRTALAYWTFALVTMLGADRMLPTSGGRLTLGVMADIVFLTLLTYASGGASSGLPFMHVVVLAFAALVGQGRLAVFYAAVASLAMLFEQSIQAITTVDDATTFVQVGTISIGFFATAIAVRLLARRVIANELLARERGRDLAEQMRVNERVIRDMEDGVLVVDPDGRVRQANPQAHRLLDPAMPRPVTLADFSPALDDLLSGIASADRERVMVLDLPARPAAVRVRCVPAGEQGGHLVFVEDLARLREQARQIKLAALGRLTASMAHEIRNPLSAITQAAELLQEERRAETQARLTRIICDNSQRLDRLVSDVLELGRRDRAEPELLDVAVYARSFVDELAMRDASVRSRVRIDAPTSGAIWFDRGHLHQVLWNLVVNALRYASPGQESVRIIVRGEDDATLIEVLDDGPGIDIAVRTHLFEPFFTTHSKGTGLGLYIARELCEANGARLEFVDNSPGAHFRVRGMNRSWDGAWNVGDHNLS
>NZ_CP016448.1|WP_069038060.1|966490_966733_-|hypothetical-protein
MTRILFFALLALVAWLWFFKKTRKPDPVERKPETKAIEQIVQCAHCGLRLPEGEALAAGERHYCSIEHRDAHADAPDDGR
>NZ_CP016448.1|WP_069040448.1|967117_968047_-|polyprenyl-synthetase-family-protein
MSQLDVVIRERLHSEVVLVRQVAEYIIGAGGKRMRPALVLLTSGACGYTGVHRTELAAVVEFIHTATLLHDDVVDESELRRGAKTANALFGNAASVLVGDFLYSRAFQMMVGVGSMRVQAVLAEATNVIAEGEVLQLLNCHDADVDEQRYLQVIRYKTAKLFEAASRLGALLAGATPEVEERFARFGMHLGTAFQLIDDVLDYSGDEQSIGKNLGDDLAEGKPTLPLIHVMKNGTPPQVAAVRHAIEEGGRDDWAAVLEAVVASGAIDAARIHARAEAALASAALQGLPSNEYMQSLFDLAAFAVEREF
>NZ_CP016448.1|WP_069038061.1|968228_968540_+|50S-ribosomal-protein-L21
MYAVIKTGGKQYRVASGEKIKVEQIPADVGSEIVIDQVLMVGEGESVKIGAPLVAGASVRATVLTQGRHKKVTIFKMRRRKHFQKHQGHRQNYTELRIEAING
>NZ_CP016448.1|WP_069038062.1|968590_968854_+|50S-ribosomal-protein-L27
MAHKKGGGSTRNGRDSESKRLGVKSYGGQLISAGSIIVRQRGTEFHPGDNVGMGKDHTLFAKIEGVVQFSIKGATRRRVVTIVPAAA
>NZ_CP016448.1|WP_069038063.1|968986_970078_+|GTPase-ObgE
MKFFDEAKIEVIAGDGGNGSASFRREKFIPFGGPDGGDGGRGGSIWAIADRNLNTLIDFRYTRMFKADSGANGRGADCYGRGGEDRELRMPVGTTITDLATGAVIADLDRDGARALIAKGGRGGLGNLHFKSSTNRSPKQTTPGEEGERRELKLELKVLADVGLLGMPNAGKSTFIRAVSAARPKVADYPFTTLAPNLGVVRVDESRSFVLADIPGLIEGAAEGAGLGHQFLRHLQRTRLLLHLVDIAPFDEAADPLHDARAIVEELRRYDDALYQKPRWLVLNKIDLIPEDERAARVKAFVDAFGAERVFTISALTRIGCDGLCYAVMDHVEATRPPPDPEPDVRDRDITEPADESDDESAN
>NZ_CP016448.1|WP_069038064.1|970061_971177_+|glutamate-5-kinase
MRARIERAKRLIVKVGSALVTNNGAGLDLGALQEWARQIAALRADGREVLLVSSGAIAAGMQRLGWATRPHAMHELQAAAAVGQMGLAQAYEGAFSGYGLVCAQVLLTHEDLADRTRYLNARSTLSTLMELGVVPVINENDTVVYEEIKFGDNDTLGALVANLTEADCLIILTDQNGLYTADPRKDPAATLISEGDADDARFEAMAGGAGSGISRGGMITKVRAARRAARSGADTVIASGREPDVLLRLVRGEALGSYLKAGSSPLAARKQWLADHLQMVGTVTLDEGAARALRQGKSLLPVGVIDVQGQFERGAVVACRDTQGNELARGLINYSASETRRIARRASSEIEALLGYIDTEELIHRDNMVLA
>NZ_CP016448.1|WP_069038065.1|971189_972659_-|sensor-histidine-kinase
MSDAERPATTGSARRRVITEGLSRAARKAESATGGAERLTDSVLMRLARFRWGALLVVAIGIAFTVISETTFQSMQRAREEIDASRLSLAALNDLVFDNAHVAMTEARYIEEPSADHLQQHLIAAQRLASAADEVVGWAMRRRIDPERIALVRSVSVAEAEELKRLRELPANASPVEVMDVFLPQVVAQEPLREALEPLVKTERAYLEEQMALLGEEIEHQRSVAIAVVAIGVLLLILLLRAYSMRSQVELATANRLREARDELDALVRVRTEELSELASHLQTEAERQKSALARELHDELGSILTASRMEASMLLRRARKQGSPDVDSLARVCDILEQGVQIKRRVIEGLVPTVLTHLGLLPALEALADETRASAPFELELLLPDALELDRDRGIAIYRVVQEALTNIRKHAQANRVTITLSVADGKIALDIVDDGVGIATGARGKTGSHGLLGMKYRADALGGSFRIGPAPGRGTQLCLSLPLPAGD

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Crispr_ID: NZ_CP016448_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_5

1370669-1370754

Orphan

Consensus_repeat	Method
GGGCATCGCTGCGCTCACCCCAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_5

>merge|NZ_CP016448|5|1370669-1370754|CRISPRCasFinder
GGGCATCGCTGCGCTCACCCCAACCCACGATGAACCGACCCATGCACAGGGCTGATGCGTTGGGCATCGCTGCGCTCACCCAAACC

>NZ_CP016448|5|5|1370669-1370754|CRISPRCasFinder
GGGCATCGCTGCGCTCACCCCAACC	CACGATGAACCGACCCATGCACAGGGCTGATGCGTT
GGGCATCGCTGCGCTCACCCAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069038378.1\|1366567_1368478_+\|type-IV-pili-methyl-accepting-chemotaxis-transducer-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|226368
NZ_CP016448.1\|WP_069038384.1\|1378550_1379288_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP016448.1\|WP_069038387.1\|1381648_1382452_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NZ_CP016448.1\|WP_069040499.1\|1377885_1378554_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP016448.1\|WP_069038375.1\|1361783_1362848_+\|fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691
NZ_CP016448.1\|WP_069038388.1\|1382755_1383118_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224278
NZ_CP016448.1\|WP_069038372.1\|1357931_1358945_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP016448.1\|WP_069038371.1\|1355777_1357808_+\|transketolase	unknown	unknown	gnl\|CDD\|183723
NZ_CP016448.1\|WP_069038379.1\|1368474_1369176_+\|response-regulator	unknown	unknown	gnl\|CDD\|182619
NZ_CP016448.1\|WP_069038374.1\|1360315_1361764_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP016448.1\|WP_069038383.1\|1376326_1377850_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP016448.1\|WP_069038382.1\|1372520_1376315_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP016448.1\|WP_069038381.1\|1370810_1372466_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP016448.1\|WP_069038377.1\|1363748_1366352_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP016448.1\|WP_069038386.1\|1380087_1380786_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP016448.1\|WP_069038380.1\|1369414_1370662_+\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP016448.1\|WP_069038376.1\|1362856_1363738_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_CP016448.1\|WP_069038373.1\|1359090_1360257_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP016448.1\|WP_069040500.1\|1380812_1381211_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069038385.1\|1379298_1380081_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|376360

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069038378.1\|1366567_1368478_+\|type-IV-pili-methyl-accepting-chemotaxis-transducer-N-terminal-domain-containing-protein	gnl\|CDD\|226368	COG3850, NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].	3.38671e-104
NZ_CP016448.1\|WP_069038384.1\|1378550_1379288_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	2.04729e-102
NZ_CP016448.1\|WP_069038387.1\|1381648_1382452_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	0.000253847
NZ_CP016448.1\|WP_069040499.1\|1377885_1378554_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	8.49279e-46
NZ_CP016448.1\|WP_069038375.1\|1361783_1362848_+\|fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0
NZ_CP016448.1\|WP_069038388.1\|1382755_1383118_+\|hypothetical-protein	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	0.0043221
NZ_CP016448.1\|WP_069038372.1\|1357931_1358945_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP016448.1\|WP_069038371.1\|1355777_1357808_+\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NZ_CP016448.1\|WP_069038379.1\|1368474_1369176_+\|response-regulator	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	4.1801e-68
NZ_CP016448.1\|WP_069038374.1\|1360315_1361764_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP016448.1\|WP_069038383.1\|1376326_1377850_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP016448.1\|WP_069038382.1\|1372520_1376315_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP016448.1\|WP_069038381.1\|1370810_1372466_+\|MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	2.09737e-56
NZ_CP016448.1\|WP_069038377.1\|1363748_1366352_-\|PAS-domain-S-box-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.92311e-59
NZ_CP016448.1\|WP_069038386.1\|1380087_1380786_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	2.6388e-87
NZ_CP016448.1\|WP_069038380.1\|1369414_1370662_+\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	1.39931e-114
NZ_CP016448.1\|WP_069038376.1\|1362856_1363738_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP016448.1\|WP_069038373.1\|1359090_1360257_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP016448.1\|WP_069038385.1\|1379298_1380081_+\|peptidylprolyl-isomerase	gnl\|CDD\|376360	pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	7.58528e-18

>NZ_CP016448.1|WP_069038380.1|1369414_1370662_+|NarK/NasA-family-nitrate-transporter
MTRKGQALSVLIVSTLAFTVCFMVWMMFGVIGIPIKKALDLNATQFGLLTATPVLTGSLVRVPLGIWTDKYGGRIVMTLLMAATVPAIWMMSYATEYWHFLVIGLFVGLAGGSFSVGTPYVARWFPKGQQGFAMGIYGAGNSGAAVNKFVAPALLVAFGWTMVPQAYAAIMLGTVVIFWLFSHSDPAHLVPSNVRFMDQLKALKDPRVMKYCQYYSIVFGGYVALSLWMVQYYVGEYGMEIRSAALLAACFSLPGGVLRAAGGWLSDKYGAHSVTWWVLWVSWICLFLLSYPQTHFTIVTVDGPKTFDIGLNVYAFTALMFILGIAWAFGKASVFKYISDDYPANIGTISGIVGLAGGLGGFVLPIMFGALVDLTGIRSSAFMLMYAVVWVSLIWMYFTEVRRTRLMGEPSGVQG
>NZ_CP016448.1|WP_069038379.1|1368474_1369176_+|response-regulator
MNDRTSRDADLPIRILLVDDHTLFRRGLTALLSRDPGLQVVGDAADAGEAQRRAASLQPDIILLDNHLPGVSGIDALPALREAAPHASVLMLTISEDENDLAAALRAGACGYLLKTMEGEALASAIHRAMRGESVVANEMTGKLVAVYRQAAAAPTPASDAPAGADIAGNGALSPRETDILRGIARGDSNKQIARDLGIAETTVKIHVQHILRKLGVSSRVQVAVIAVERGLT
>NZ_CP016448.1|WP_069038378.1|1366567_1368478_+|type-IV-pili-methyl-accepting-chemotaxis-transducer-N-terminal-domain-containing-protein
MNVRKLRGLGAKLALSAAPFALLALLSVTLTLWVSWQLDGGAAAVNEAGRMRMQAYRLSLQVSRHEQDALSGAIETFERSLALLRNGDPERPLFVPWDDDVRLRFARVESGWQQYRTTWLDAPPLRLQALGTDTAAFSADIDALVSGIEAHMSRWTALLHLLQLATIAIAVLGSSVLLYVGYLFVLEPVGHLKQAIERIQSGDLGARVERATDDEFGTLADGFNGMADQIQAMYRNLEAKVNAKTAELQEKQERLEALYEVTSLIATARSLDELAQGFVGYVARALHADGVGLRWSDESNQRYLMLASQGLPAYMTEGERCLKANECHCGVPDASPNARIIPIRSMTQGGLQYCAEAGFETLVSVPVRLKERVMGEIDLFFHAEIDLTPSARSLLEALTTHLASGMENLRLTALRNEAAVSQERNFLASELHDSIAQSLAFMKMQLEMMRGALAERDTLQTERILGELDAGLRESTGDVRELLLHFRTRTNAEDIEGALLGTLRKFEHQSGVHATLNMHDHGIPLPPDIQIQVLHIVQEALSNVRKHARASQVWLDVKQQPLWVFEVRDDGSGFDVSHGAADETHVGLRIMTERAERIGARVEVFSTPQRGTSVVLTLPPSTELFERATAAETSES
>NZ_CP016448.1|WP_069038377.1|1363748_1366352_-|PAS-domain-S-box-protein
MLRGPSGAALGCVCALWLPAAWWIGPDALLLQAAWAIWCAACAALLLRVHRRTPVATQEEVPAPAGADSADHDIVQAIPLSICVCALPGGEILFANDAMVDLAGEPRGSLLGRALGEFCAQTHDRERLGLALATGHGFDDVELPVRRADGNVRWLSVCGRPDEFAGRAALFVVCHDVTVHKQAQRSLIASEERFRVLLGALSESVVLYDAQAKVLTRNRAAEGCTWLDDAHAGLPGGHDEARLFDEQGRALSNARHPVMRSLSDGQPLREVVIGTGRAGSPMRWLSVTTQPLFHAGASRPYAVVASYSDLTARIRAERALRASEQRYALALRGMNEGLAEWINGSEELYVSPRLSHIMGYDGGGRRMPVKDFVAGIHPADKPGWDAMMDDLLGGGHDVFQLELRMRHADSTHHWFMVRGVAQRDATGRSTRVVGTIGDISLRKRLEQVDLAERELLARIASGVPLADVTSRLAVLVEGLLNEDSRVAVLTCGASAADSVDVVAPGLSAAFRAALTRLPLPSGALSSPLVIADPDGAPGADAHRSALAEEGLRALWALPLAGQGGIALGALVICHRRPWRPGRSDENLVQRLVDIAQLAIERARGERQVRELNESLERRVAERTALLEQANNELEAFSYSVSHDLRSPLRAINGFAHLLTEHAAATLDDEGRDMLQRIQRGSNRMGQLIDDILRFSRMARIDMAHAEVGLDKLARSVAAELREQYPVARITVAPLGQVSGDHAMLRQVFANLIGNALKFSVHAEPPLIELFVALQDGGPAICVRDNGVGFDPLYADRLFGVFQRMHGAEEFPGTGVGLAIVKRIVERHGGRVSVQAAPGKGATFCFTLRGFVPTEPLGGPVGETRTGT
>NZ_CP016448.1|WP_069038376.1|1362856_1363738_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MADALFESRIKSLPLIARGKVRDIYAIDDATMLIVTTDRLSAFDVILPDPIPGKGKVLTAVSNFWFDRLAGVSPNHLTGIAPESVVSADERDQVEGRAIVVRRLKPLPIEAVVRGYLIGSGWGDYSRTGSVCGVALPHGLRMASKLPAPIFTPATKAAAGDHDENISYAQTEALIGAALAAQVRDTAIALYSAASDYAKSRGIIIADTKFEFGLDPDGKLILIDEALTPDSSRFWPADQYREGVNPPSFDKQFVRDYLETLDWNKSAPGPSLPADIIQRTGDKYREALTRLIG
>NZ_CP016448.1|WP_069038375.1|1361783_1362848_+|fructose-bisphosphate-aldolase-class-II
MPMVSMRQLLDHAAENGYGIPAFNVNNLEQVQAVMSAADEVGAPVILQASAGARKYAGEPFIKHLIEAAIESWPHIPLVMHQDHGQSPDVCKGAIDLGFSSVMMDGSLQADGKTIASYDYNVEVTRKVVDMAHALGVTVEGELGCLGSLETMKGDKEDGHGTEATMTMDQLLTDPEEAADFVKRTQLDALAIAIGTSHGAYKFTRKPTGDILAISRIKEINKRIPNTHLVMHGSSSVPQDLLAIIRQYGGDMKETYGVPVSEIQEAIKHGVRKINIDTDIRLAMTAAIRKYMFENPSKFDPRDYLKPAREAAKGICKQRYIEFGCEGQAGKIKAIPLVQVAQNYASGKLAQQVI
>NZ_CP016448.1|WP_069038374.1|1360315_1361764_+|pyruvate-kinase
MHRFTKIVATLGPASSDLATLTRLVEAGVDVVRLNFSHGKADDHRARVETLAVAAAKAGRTVGVMADLQGPKIRVGKFADNKVMLKGGQAFVFDIECTLGDAGRVGLDYPELVNDVEPGAVLLLDDGRIVMDVKSVNATQIHCTVRHGGELSNNKGINRQGGGLSAPALTPKDMEDIKIAASLNVDYVAVSFPKSGADMRQARELLRAAGSNALLIAKIERVEAIPALEEILDASDGAMVARGDLAVEVGDAAVPAMQKRIIRVSREMNKLVITATQMMESMIHSPVPTRAEVSDVANAVLDGTDAVMLSAETASGAYPVETVEAMARICIEAEKSAEVKLDQEFLTRVFTRIDQSIAMAALFSAFHLKVKAIATLTQSGSTSLWMSRLNSGVPIYALTPEVRTRYKLSMYRGVTPLMIKLDPDADRDRMLVDAEAELLRSGAVQVGDLIVLSFGEPIGVPGGTNTLKIVKVGEYRQLSTVI
>NZ_CP016448.1|WP_069038373.1|1359090_1360257_+|phosphoglycerate-kinase
MQFTRLSDLDLKGKRVFIRSDLNVPQDDAGNITEDTRIRASLPAIRTARDAGAAVMVTSHLGRPTEGELKPEDSLAPIARRMSELLGFDVKLVADWVDGVTVAPGEVVLLENCRANKGEKKCDDALSKKLAALCDVWVNDAFGTAHRAEATTYGMGQYAPIACAGPLMASELDALGKALGQPARPLAAIVAGSKVSTKLTLLENLADKVDQLIVGGGIANTFLLAAGKNIGKSLAEPDLLDAAKRVMAKTKVPLPQDVVCAKSFAADAPATVKSVDAVADDDMILDIGPKSATELADLLAKAGTIVWNGPVGVFEFDAFGHGTETVARAIAASSAYSIAGGGDTLAAIAKYGIADQVSYISTGGGAFLEFLEGKTLPAVDILLRRAHG
>NZ_CP016448.1|WP_069038372.1|1357931_1358945_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVAINGYGRIGRNVLRAHYEGGKRHDIQIVAINDLGDPKTNAHLTRYDTAHGRFPGEVSVDGDYMVVNGDRIRVLANRNPAELPWGELGVDVVLECTGFFTTKEKASAHIKGGAKKVIISAPGGKDVDATIVYGVNHGVLKATDTVISNASCTTNCLAPLVKPLHDKIGVVHGLMTTIHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLVLPDLNGKLDGFAMRVPTINVSIVDLTFTAARATTTDEVNGILKAASEGELKGVLGYNVEPLVSIDFNHDARSSIFDSTQTRVMGGTLVKVLSWYDNEWGFSNRMLDTTVALMAAK
>NZ_CP016448.1|WP_069038371.1|1355777_1357808_+|transketolase
MTASTATPTITPRGGFNPITGAIRALAMDAVQKANSGHPGAPMGMAEIAEVLWRHHLKHNPANPDWADRDRFVLSNGHGSMLLYALLHLTGYDLSIDDLKSFRQLHSKTPGHPERGYAPGVETTTGPLGQGLANAVGMALAERGMAAQFNRPGHTIVDHFTYAFAGDGCLMEGVSHEACSLAGTQGLGKLIVFYDDNGISIDGHVEGWFADDTPKRFEAYGWQVIPAVDGHDSTALNAAVIAAKADLSRPTLICCRTVIGLGSPNKAGGHDVHGAPLGAAEIEAARAFIGWSYAPFDIPADVYEAWDARPAGKAAEAGWNDRFAAYAAAHPDLAAEFKRRMHGTLPGHFDQTVADTIAKFDGKADNIASRKASQNCIEAFAPALPELLGGSADLAGSNLTLWSGSKGISADNPGGNYLYYGVREFGMSAIANGIALHGGFIPYTATFLMFSEYARNALRMAALMKLRQVFVFTHDSIGLGEDGPTHQPVEQTATLRLMPNMDVWRPADTVESAVAWASALRRDDGPTSMMFSRQNLPHTARDASTIAAIARGGYVLSDADDAQVVLIGTGSEVSLALAAQKTLAADGIAARVVSMPSTTVFDRQDAAWRDKVLPRALPRVAVEAGVTDLWRKYVGLDGAVIGLDHFGESAPAGELYKAFGITAEAVAAAARKVLGR
>NZ_CP016448.1|WP_069038381.1|1370810_1372466_+|MFS-transporter
MTTNSRAGTPPATPAAGSDIADWRPEDEQIWESTGKKIAYRNLWISVPALLCGFAVWGMWGIITVQMLNLGFPFAKEELFTLTAIAGIAGATMRIPASFLIRLAGGRNTIFLTTAMLLAPAIGTGIALQHPEWPLWVFQLMALWSGVGGGNFASSMSNISTFFPKKLQGTALGLNAGLGNFGVTTMQIVIPLVMTVGLFGAFGGESMVLVKDSGWIGGKILAGTPTWIQNAGFAWVLSLVPLSILCWFGMNNLKTVSPNTGNPMVAFSKITYLYTLAFVPAIFMLWLYLPAPTGLGVLSMWVAIPLDIILALLVMKVAAFGEMKEGVTKQFAIFKNKHTWSMTALYIVTFGSFIGFSMALPLAITVIFGTSHVPDATGVMQHTLKNPNAPSALTYAWIGPFVGAAVRPLGGWISDKLGGSIVTQVISIVMAIASVAVGYVMMQAYGSATPEEYFPMFLGLFMVLFFASGIGNGSTFRTIGVIFDRTQAGPVLGWTSAVAAYGAFIAPVVIGEQIKAGTPELAMYGFAIFYAICIVLNWWFYLRGNAYVKNP
>NZ_CP016448.1|WP_069038382.1|1372520_1376315_+|nitrate-reductase-subunit-alpha
MSHFLDRLSHFSNPKEAFSGDHGITTGEDRSWEDAYRNRWAHDKIVRSTHGVNCTGSCSWKIYVKGGIVTWETQQTDYPRTRWDMPNHEPRGCARGASYSWYLYSANRVKYPMVRGRLLKSWREARLAHGPVEAWASIVENDAKRRDYQQVRGLGGFVRSSWDEVNEIVAAANVYTIKKHGPDRVIGFSPIPAMSMISYAAGSRYLSLIGGVCMSFYDWYCDLPPSSPQIWGEQTDVPESADWYNSTYIIAWGSNVPQTRTPDAHFFTEVRYKGAKTVAVTPDYSEVAKLSDIWMKPKQGTDAAVAMAMGHVILKEFYFPDSGERSAYFDDYVRRYTDMPMLVMLKEHKLPNGDMILVPDRYVRASDFNGKLGQANNPEWKTVAFDDSGKVVLPNGAIGFRWGADGRADEGQWNLEAKEARHGANVKLKLSLLEGEAPSSETARVGFPYFGGIVSEHFPNNAQTDVLVRTVPVQRIALGKAGEKRDALVATVFDLQVANYGIARGLPGELAAKDFNDDTPYTPAWQECITGTPREQLITVARQFAENAHKTKGKSMVIIGAAMNHWYHSDMNYRGVINMLMMCGCIGQSGGGWAHYVGQEKLRPQTGWTALAFALDWIRPPRQMNSTSFFYAHTDQWRYEKLGMEEVISPLADKKMYGGSMIDYNVRAERMGWLPSAPQLQTNPLQVVRDAASAGMDPKDYAVRGLKDGSLKMSCTDPDHPDNWPRNMFVWRSNILGSSGKGHEYFLKHLLGTSNGVQGKDLGKEEAKPTEVVWHDTAPEGKLDLLVTLDFRMSTTCLYSDIVLPTATWYEKNDLNTSDMHPFIHPLSTAVDPAWQSRSDWDIYKGFARKFSEVCVGHLGVERELVLSPLMHDSPSELAQPFDVKDWKRGECELIPGKTAPNLVVVERDYPNVYKRFTALGPLMNKVGNGGKGISWNTQTEVKQLGELNGLVTAEGVTCGMPKIDTDIDACEVVLQLAPETNGHVAVKAWQALGKQTGLKHEHLALYREDEKIRFRDIQAQPRKIISSPTWSGIESETVSYNAGYTNVHELIPWRTLTGRQQFYMDHPWMIAFGEGFTSYRPPVDLKTTAGIHNIKPNGNPEIALNFITPHQKWGIHSTYTDNLLMLTLSRGGPCVWMSEDDAKRADIIDNDWIELFNINGAIAARAVVSQRVKPGMVMMYHAQEKIVNTPGSEITGARGGIHNSVTRIVLKPTHMIGGYAQFSYGFNYYGTIGTNRDEFVVVRKMKRIDWLDNEKSAADTSHA
>NZ_CP016448.1|WP_069038383.1|1376326_1377850_+|nitrate-reductase-subunit-beta
MKIRAQIGMVLNLDKCIGCHTCSVTCKNVWTSRPGMEYAWFNNVETKPGIGYPKEWENQDKWQGGWVRRADGSIVPRQGGKWQLLMKIFANPHLPEIDDYYEPFTFDYDHLQSAPESKATPTARPRSLITGKRMEKIEWGPNWEEILGGEFSKRSKDKNFDEVQKEIYGEFENTFMMYLPRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWQSGKAEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADCIQEAASVEHDRDLYQAQLDIFLDPNDPKVIEQARADGIPDSWMESARRSPVYKMAVEWKVALPLHPEYRTLPMVWYVPPLSPITAAANAGQVGVNGEIPDVNQLRIPVKYLANLLTAGDTQPVVRALERMLAMRAYQRAKHVDGETNMAALNQVGLTQAEVEDMYHVMAIANYEDRFVIPTAHREYAEDAFDVRGGCGFTFGNGCSEGSSDTSLFGGSKRRTIPIKAVV
>NZ_CP016448.1|WP_069040499.1|1377885_1378554_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MTLTLRVMAHLLSYPDATLREHLPELRDALRSERALSSSRLAELDALIGSLERGDALETEADYVELFDRGRRTSLHLFEHVHGDSRDRGPAMIDLAQTYEKAGLYLGPDELPDYLPAVLEFASTQPPKEACALLAEMAHILNVIFSALLQRESPYASVLGALIEMAGEKAQAVTIAPDEPIDESWAEPLAFDGCSSNGQAKPGTPHPIHIVRKSSATEGVQP
>NZ_CP016448.1|WP_069038384.1|1378550_1379288_+|respiratory-nitrate-reductase-subunit-gamma
MTPWLDTLLFGYYPYICLAVFFIGSLLRFDRDQYTWKSDSSQLLRRGQLRLGSNLFHIGVLFLFFGHFFGMLTPHFVYEHFIGAGAKQVVAMVSGGIAGLIAFVGLTLLLHRRLTEPRIRATSKTSDILIAALLWLQLLLGLATIPMSAQHLDGSMMMKLAEWAQRIVTFRAGAPELLAEAGWVFKTHMFLGMSIFLIFPFTRLVHVWSGFASVFYAFRPYQVVRARRLNLPAGHNQPRQPDASV
>NZ_CP016448.1|WP_069038385.1|1379298_1380081_+|peptidylprolyl-isomerase
MTIETLSRVARVNGVQISNEDEALTAETLQQRAYTELLRQAAQSAGLLAAEEKTTPDGVISESAASAIDALVERSVQVPEPSEDACRRHYAAHEASYRTGEKVRVRHILFAVTEGVDVVALRKRAEGVLLDVRCHDGSEQDTFAHAAEQFSNCPSGARGGELDWLTADDCAPEFAREVFGHVEVGVLPRLVHSRFGLHVVEVLERDPGIAQSYESVRGAVAGTLRQQSFVTALRQYLSLLAGAAVIEGIDLDRADSPLVQ
>NZ_CP016448.1|WP_069038386.1|1380087_1380786_+|carbonic-anhydrase
MPDELLARLQRFHDHTFPGARERFQDLVRDGQHPTILFIGCSDSRLVPYLLTGTGPGELFIVRNVGAFVPPYDIRAQHGQLAGFHGTTAAIEYAVLNLKVAHIIVCGHSHCGGVRALYEGVDPDTAPNLAAWLDLGREAVLPVQLTDEALRRTEQRAVVLQLERLMDYPMVRRQVDAGQLALHGWHYVIEEGEVHVFDVHQGAFVPASSAAHSGTGPFLPFAGDAISPVDAW
>NZ_CP016448.1|WP_069040500.1|1380812_1381211_+|hypothetical-protein
MAINDLPHDFTPSNRRDFPGRRWLLVALRSVHLIGVVLVGAALLGDHDAYRPAAAALMLVTGIGLYGIEVWSKPRHALELAGLFIPLKLAGVAAMIVLPQLAAAIFWLLLVASSIVSHAPAGFRHLRPGKRS
>NZ_CP016448.1|WP_069038387.1|1381648_1382452_-|PEP-CTERM-sorting-domain-containing-protein
MKLLALTVASAMLSAASLAHAAAPAAVATWNFNNTLSADEAGKPALSAIDPLSASGFVMDTVFGETRWVYRFDGDAMPSQQAGLFVDTSGLLDADDAYSVDIVFQFEADDASWENIFGVSNRQSDNALYIDPGQRLEVWPSGDGPTPFTYGEYHRVTLTNNGNDTVTGYMDGIFQFTLSSTSLNFSAYAAANPSRLIHFFADNLVGGGQGEFADGRVASIRLYDIELDGDQVGELPPLPAVPEPSAVALMLAGLGVIAAAARRREWC
>NZ_CP016448.1|WP_069038388.1|1382755_1383118_+|hypothetical-protein
MNQDTVCTLVPYFDVPADKVDEFKALGKRFVERTRSEPGCVHYAFSFSGCTAHCREGYDNAEAILHHLENVGGLLQEALAIAYLIKLEVHAPAAEIAKLRDPLTAMKPQYFVLEEGGIRR

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Crispr_ID: NZ_CP016448_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_6

1618578-1618675

Orphan

Consensus_repeat	Method
TTGTTGGGCATCGCTGGCGCTCACCCCAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP016448_6

>merge|NZ_CP016448|6|1618578-1618675|CRISPRCasFinder
TTGTTGGGCATCGCTGGCGCTCACCCCAACCTACGGGGCGATGGGGCGACGCGACGTACGGAAGCCTGATTGTTGGGCATCGCTGCGCTCACCCCAAA

>NZ_CP016448|6|6|1618578-1618675|CRISPRCasFinder
TTGTTGGGCATCGCTGGCGCTCACCCCAA	CCTACGGGGCGATGGGGCGACGCGACGTACGGAAGCCTGA
TTGTTGGGCATCGCTGCGCTCACCCCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069038573.1\|1621763_1624016_-\|arginine/lysine/ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
NZ_CP016448.1\|WP_069040533.1\|1614522_1615215_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP016448.1\|WP_069038577.1\|1627477_1627861_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP016448.1\|WP_069038568.1\|1616067_1616940_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP016448.1\|WP_083224133.1\|1626959_1627232_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP016448.1\|WP_069038563.1\|1610604_1611702_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270400
NZ_CP016448.1\|WP_069040534.1\|1621202_1621697_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP016448.1\|WP_069038565.1\|1613163_1613745_+\|DUF615-domain-containing-protein	unknown	unknown	gnl\|CDD\|235377
NZ_CP016448.1\|WP_069038569.1\|1617155_1617980_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP016448.1\|WP_069038575.1\|1624999_1625566_-\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_CP016448.1\|WP_069038567.1\|1615229_1616063_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP016448.1\|WP_069038578.1\|1627863_1629195_+\|sulfite-dehydrogenase	unknown	unknown	gnl\|CDD\|275348
NZ_CP016448.1\|WP_069038566.1\|1613731_1614331_+\|molybdopterin-adenylyltransferase	unknown	unknown	gnl\|CDD\|181837
NZ_CP016448.1\|WP_190295067.1\|1618776_1620246_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069038564.1\|1611698_1613039_-\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NZ_CP016448.1\|WP_069038562.1\|1608983_1610561_-\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NZ_CP016448.1\|WP_069038572.1\|1620411_1621206_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_CP016448.1\|WP_069038570.1\|1617979_1618564_+\|esterase	unknown	unknown	gnl\|CDD\|225692
NZ_CP016448.1\|WP_069038574.1\|1624175_1624844_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NZ_CP016448.1\|WP_069038576.1\|1625688_1626963_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069038573.1\|1621763_1624016_-\|arginine/lysine/ornithine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NZ_CP016448.1\|WP_069040533.1\|1614522_1615215_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.20265e-115
NZ_CP016448.1\|WP_069038577.1\|1627477_1627861_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.76362e-15
NZ_CP016448.1\|WP_069038568.1\|1616067_1616940_-\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	8.31759e-10
NZ_CP016448.1\|WP_083224133.1\|1626959_1627232_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	6.13406e-12
NZ_CP016448.1\|WP_069038563.1\|1610604_1611702_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270400	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold. This subgroup includes TRAP transporters that bind to ketoacids such as pyruvate and alpha-ketobutyrate, xylulose, and other unknown ligands. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP016448.1\|WP_069040534.1\|1621202_1621697_+\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	2.9245e-81
NZ_CP016448.1\|WP_069038565.1\|1613163_1613745_+\|DUF615-domain-containing-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	3.15515e-65
NZ_CP016448.1\|WP_069038569.1\|1617155_1617980_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.10168e-115
NZ_CP016448.1\|WP_069038575.1\|1624999_1625566_-\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	1.65979e-113
NZ_CP016448.1\|WP_069038567.1\|1615229_1616063_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	4.76952e-121
NZ_CP016448.1\|WP_069038578.1\|1627863_1629195_+\|sulfite-dehydrogenase	gnl\|CDD\|275348	TIGR04555, probable_sulfite_oxidase_molybdopterin_subunit, sulfite dehydrogenase. Members of this family are the sulfite dehydrogenase SoxC. All members have a twin-arginine translocation (TAT) signal for secretion of proteins with bound cofactor across the plasma membrane.	0
NZ_CP016448.1\|WP_069038566.1\|1613731_1614331_+\|molybdopterin-adenylyltransferase	gnl\|CDD\|181837	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional.	4.41427e-136
NZ_CP016448.1\|WP_069038572.1\|1620411_1621206_+\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_CP016448.1\|WP_069038564.1\|1611698_1613039_-\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	4.67004e-172
NZ_CP016448.1\|WP_069038562.1\|1608983_1610561_-\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	1.32659e-91
NZ_CP016448.1\|WP_069038570.1\|1617979_1618564_+\|esterase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	2.9455e-50
NZ_CP016448.1\|WP_069038574.1\|1624175_1624844_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	0.00557203
NZ_CP016448.1\|WP_069038576.1\|1625688_1626963_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	1.17535e-25

>NZ_CP016448.1|WP_069038570.1|1617979_1618564_+|esterase
MRKLIYLHGFRSGPQSVKAVQLRAHLARQGQAGDLWCEQLPPGPLDAIALIESVLCPAVADGDEVALAGSSLGGFYALHLAEKHGLHAALINPAVVAPKSLGDYVGEHEHMYTGEVFRFEQEHVEQLAELDVAAVTRPERYLVLLETGDEVLDWWQAVLKLRGANLVVHAGGDHSLQSFAKELPRMTEFLLPDR
>NZ_CP016448.1|WP_069038569.1|1617155_1617980_+|undecaprenyl-diphosphate-phosphatase
MDPLLIKAFILGIIEGLTEFLPISSTGHLIIAGSLLGYTDDTSRVFKIVIQLAAILAICWEYRRKLIDVGSGVLARDPQANHFVTLVLIAFMPAAVLGFLLHGVIKAYLFNPLTVAGALIVGGVLILLIERRNHQPRYETVEDMDWRAALKVGFAQSVAMFPGVSRSGATIMGGLIFGLSRRAATEFSFFLAIPTMFAATAYDVYKNWALLRAEDLPVFATGFVASFLAAFFSVRWLLRYISTHTFEVFAWYRIAFGIIVLLTAAGGWVDWADH
>NZ_CP016448.1|WP_069038568.1|1616067_1616940_-|TonB-family-protein
MTAAEPALPPLAIGIAVSILVHGFVLAINFAPDLKPKQKAVDQPLEVVLVNARGKQKPVDPQALAQASLDGGGNTDQDRRAKTPLPASKRDQAGDQLVSTQSRVQELEALQQKLLAEAQARTEVKEEERRVEQPEPTPQAVPLPTGADLAARAMAMARLEAEIARNVDDYNKRPRKKFVGARTQEYRFAQYIEDWRQKVERIGNLNYPSAARGRIYGNLTLTVEIRSDGEIEQIYVSRSSGQPLLDEAAQRIVRMAAPYAPFSPDIKRDFEILSITRTWSFTQGDQLEAR
>NZ_CP016448.1|WP_069038567.1|1615229_1616063_-|shikimate-dehydrogenase
MPDRYAVVGHPISHSKSPAIHAAFAAQTGQDMIYEALLAPLEGFAATVERFRAEGGRGMNITVPFKEEAWRLADTLTERARLAGAVNTFVFDEQVLGDNTDGAGLVRDLEWLGSRLNGARVLLLGAGGAARGVVLPLLDAGVARLFIANRTADKARGLEAHFAGHDTRAALAAGGWQDAADAPYDIVINATSASLSDQAPPLPQGLYAPGSLAYDMVYGRGLTAFLKQARVQGASTLSDGLGMLVEQAAEAFALWRGVRPDTAPVRDMLRAATPPLA
>NZ_CP016448.1|WP_069040533.1|1614522_1615215_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MLRFLRLLKWLLAAAVLLALAYQLWIFGHLLWWTKFNPDETRFMSLRLSELRERQPDAQLRKQWVPYDRISVHLKRAVIAAEDDGFVDHEGFDWEGIQKAMEKNRKKGRAVAGGSTISQQLAKNLFLSPSRSYLRKGQEAAITFMMEAVMDKRRILEIYLNVVEWGDGVFGAEAAAQRYYRVSAAKLGPDQAARLAVMLPNPRKYEKTFGPRLAAHASRVAARMHYSQVP
>NZ_CP016448.1|WP_069038566.1|1613731_1614331_+|molybdopterin-adenylyltransferase
MSKDDDLLTVGLVSVSDRASSGVYQDQGIPALQDWLSAALKTPVAFETRLIPDEQPVIEATLIELCDSAGCDLVLTTGGTGPAPRDVTPDATAAVAHKLMPGFGEQMRQISLRFVPTAILSRQTGAIRGRTLILNLPGQPKSIRETLEGVKDADGTQIVPGIFAAVPYCIDLIGGPYIETDEAVVKAFRPKSAIRPPRA
>NZ_CP016448.1|WP_069038565.1|1613163_1613745_+|DUF615-domain-containing-protein
MRPKSISTHDIPDDEPQYDGPSKSQKKRDSHALQDIGEQLVALSDTQLKRIDLPDNLRRAIEETRRTRSREGLRRQMQYVGKVMRNIDTAPLIEALDAIRGVSARAVAREQMLERMRERLIADEQVLGDIAAQWPDADLTQLRTLRRNALRETELDKPPRAFREIFRVLRQLDRAGTPDTTETAEDEHDDEQG
>NZ_CP016448.1|WP_069038564.1|1611698_1613039_-|metalloprotease-PmbA
MSRQGFSYTDDSLRDIAQDLLDHARAGGATAAEVDVSEGFGQSVTVRRGEVETIEYNRDKGIGVTVYVGQRKGYASSSDFSRDALRASVDAALSIARFTAEDDCAGLPDKSLLATEFRDLDLYHPWELPVEQAIEIAKRCEDAAFATSPDVRNSEGGSVSAQQSQFISANSLGFMAGYSSSRQYITCSVIAGEGDAMQREDWYASQRSAADLPSPEAIGRYAAERALARLGARRVRTTRVPVLFEAPLAIGLIGHFVQAASGGSLYRKSSFLLDSLGKQIFSPLISIAERPHLPRAMGSGMFDDDGVATHDREIVQDGVLNGYFLSTYSARKLGMQTTGNAGGSHNLIVKPGTRSLADMIGSIKRGLLVTELLGHGVNYVTGDYSRGAAGYWIENGQIAHPVQEITIAGNLRDMYMGIKEVGADTLVRGSKQCGSILIDRMRIAGA
>NZ_CP016448.1|WP_069038563.1|1610604_1611702_-|TRAP-transporter-substrate-binding-protein
MSARGRRSFLQAAPAALLAAPAVVGAQPAIRWRLASSFPKGLDALFPAAEQVAQQVSAATGGRFQIQVFAANELVPPFGVLDAVREGTVECGHSASYYYIGKDPTFAFDCAMPFGLNSRQQSAWLLDGGGMALMRELFAGYNIVNFPCGNTGAQMGGWFRREIRTVADLKGLKMRVGGLAGQVVTRLGVVPQQIPGSDVYPALEKGAIDAAEWVGPYDDLKLGFYKVAPYYYYPGWAEAGPQLSIYVNRQAHEALPEEYRHILEAACAAAHVGMQARYDARNPAAMKKLIAGGAQLRMFSRDILLACQKESFALYRELAASNAGFRKVFEPWNRFRSEQHLWTRISENSVDAFAGRHPVDSPAAP
>NZ_CP016448.1|WP_069038562.1|1608983_1610561_-|MBOAT-family-protein
MLFNSYEFILAFLPVVLIVFYLLGSRGWTEAAIVWLVAASLFFYGWWNPLYLGLLCASLAANFWLGRKLVPDAPQPGGRKAWLVAGLLLNLGLLAYYKYANFFVDSLGKVTGFDGSIGAIVLPLAISFYTFQQIAYLVDAYRGDTREYSFSHYCLFVTFFPQLIAGPIVHHREVLPQFARPGAFRLDHLKLAMGLTLFAIGLFKKVVLGDGMAVYASPAFAAAASGTTLSFFEAWLGTLAYTLQLYFDFSGYSDMACGLALMFGIRLPANFHSPYKAVNIIDFWRRWHMTLSRFLRDYLYIPLGGNRHGPWRRHVNLMITMLLGGLWHGAGWTFVLWGALHGAYLVINHLWHALLRRCGFAPGAGGRAARCAAGLLTFVAVVVAWVPFRAANIDTARSVLSSMAGLNGIGLPSGLAAPVRSLAPWATQKFGLNFDGGFPNNLVFWADGLPWMGVLLVIVFAAPNSNQLLRRHSAVLLPDHLSPERGAPRFPVWAPGPASVLVTAIALVWSLTWMTRVSEFLYFQF
>NZ_CP016448.1|WP_190295067.1|1618776_1620246_-|hypothetical-protein
MFGVFSSSPASVLGNPAELRRVLAEIAAAQPDLAINELTGWVESVSEAANIDIAHHVNLLYQFDSSAQPHLRKLDSAYVEQPEGKDVVWRTGRDFWSILSSAYEFALDRYMSDPAQASVLSGLSRLGSRTVRACRQRFKWDVYHNGPVDAGLWQVAGQAYLLAQASGAEVREVVNAADEAATSVEREYLRLIALHVAAPEGLVPAGVRLAEQLTSYFAARFSMASTVERGTTHWLDANQPAPPLRLVRAPLTTDGIRYFSGIAAADAALAMARKLEAGEWPDSLHFDEEPSPEQLGRLLRHLSINWALDPPTRQYRRHTLGGALAVANGIKHLHHVLRGARDEAVIYRWEMSDASLGGIGATAPTASAEWVRVGSLVGMQPSGGDNWLVGVVRRYMRGRDARGTVGIETLSTTARPLEVFSERNSGEAVALDDPITGAVVRLAINGTGYSAEYPLHASINGRHVRLDPVELIERGANFDLARFRVSDFR
>NZ_CP016448.1|WP_069038572.1|1620411_1621206_+|thymidylate-synthase
MRQYLDLMRHVLEQGALKTDRTGTGTRSVFGWQMRFNLADGFPVLTTKKLHLRSIIVELLWFLRGDTNIAWLKENGVSIWDEWADENGDLGPVYGAQWRSWPTPDGRHIDQIAELVKGLRQNPDSRRHIVSAWNPASIPSMKLPPCHALFQFYVADGALSCQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLKPGEFIHTLGDAHLYLNHVDQAREQLSRAPRPLPVMHINPAVTDLFAFVPDDFRLDGYDPWPHIPAKVAV
>NZ_CP016448.1|WP_069040534.1|1621202_1621697_+|dihydrofolate-reductase
MTPRLSLIAALSANGVIGRDNTMPWHLPEDLKRFRALTMGHPMIMGRKTWDSLGRPLPGRTSIVVSRQPGLSIPGAIVVPSLAAAQLAAAQAEGGADAFLIGGAQLYALALPHVQRLLLTEIADPFDGDTVFPAFDRSEWIETAREAGISNSGLHYAFVDYARR
>NZ_CP016448.1|WP_069038573.1|1621763_1624016_-|arginine/lysine/ornithine-decarboxylase
MRFEFPIIIIDEDFRSENASGLGIRALAEAIEKEGLTILGVTSYGDLTSFAQQQSRASTFILSIDDEEFGGGSAAEIQAVLQNLREFVAEIRRRNADIPIFLYGETRTTRHITNDILRELHGFIHMFEDTPEFVARYIVREARAYLDSLPPPFFRALVHYAQDGSYSWHCPGHSGGVAFLKSPVGRMFHQFFGENMLRADVCNAVEELGQLLDHTGPVAASERNAARIFHADHLFFVTNGTSTSNKMVWHSTVAQDDIVVVDRNCHKSILHSIIMTGAIPVFLTPTRNHYGIIGPIPLSEFSPDVIRAKIEANPFARKVSNKKPRILTITQSTYDGILYNVEAIKDVLDGEIDTLHFDEAWLPHASFHDFYGDYHAIGEGRPRCKDSMIFSTQSTHKLLAGLSQASQILVQDSQTRSLDRDVFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTALVEESLAEAVEFRRAMRKVGAEFGADWWFKVWGPEHLAEEGLGTREDWTLRAGERWHGFGDLAEGFNMLDPIKATVITPGLDVDGDFADWGIPAGMLTRYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNTLVTELQQFKDDYDNNEPLWKVMPEFVAAHSRYERVGLRDLCVRIHEMYKKHDIARLTTDMYLSPMEPAMKPAEAWARMAHREIDRVPIDDLEGRITSVLLTPYPPGIPLLIPGERFNRTIVNYLRFAREFNRAFPGFETDIHGLVGDGEGETINYLVDCVRD
>NZ_CP016448.1|WP_069038574.1|1624175_1624844_-|PEP-CTERM-sorting-domain-containing-protein
MFRNLLLASSLAIVSTGAFASLDVSWIDGLENTGTGFDAGQTDTRYSFTALAGTATGTDGYGVVTTGSGFPFGSWLANNWDSVWLTPSANAAQSYDPSSAGLYKWSISFDLTGYDPAASAFSGRWASDNSGYVVFNGSTISTGSSFSSWTSFAASTGFVAGLNTIDFFVNNSAHRSGNPTGVRVEFLDSYTAVAAPVPEPASYAMILAGLLVVGAVARRRLG
>NZ_CP016448.1|WP_069038575.1|1624999_1625566_-|dCTP-deaminase
MSIKSDRWIRRMAEEHRMIEPFEAGQVREVDGRRIVSYGTSSYGYDVRCAAEFKVFTNINSTIVDPKTFDPNSFVEMNSESCIIPPNSFALARTVEYFRVPRNVLVVCLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPARIYANEGVAQMLFFESDEPCETSYRDRGGKYQGQTGVTLPKI
>NZ_CP016448.1|WP_069038576.1|1625688_1626963_-|FAD-dependent-oxidoreductase
MTTARRGFIKGTLGLSAMAALYGCAGAGKGAKGHVVVVGGGYGGATAAKYISMWSEGGIRVTLVERNAAFVSCPISNLVLAGEKQLSDITIGYEGLAKYGITVVQDDVTAVDAEKRMIRLARGGDLAYDRLVLSPGVDFMYESLPGMASAAAKDSVLHAWKAGPQTVALRKQLEAMPDGGVFAMTIPKAPYRCPPGPYERACMVAHYLKQKKPKSKVLVLDANEEIVSKKGLFTKAWADSYNGMVEYRPQSELRDVDAGNRTAILEFDQVKASVLNVVPPQRAGDIAAKSGLKLINNRWVDINWLTMESTSTPNIHVLGDAIFPAPTMPKSGHMANQHAKVAAAAIINLMSGQPPSDAPLVMNTCYSFVDATNVVHVASVHPYDAATKQPQPVKGAGGLSAAPTEMEGKYALAWARNIWADMLT
>NZ_CP016448.1|WP_083224133.1|1626959_1627232_-|c-type-cytochrome
MACAQAADPNLGRNLAATCANCHGTDGNSAGGIPGLAGMSKAKMLGLINEFRSGAKPATIMHQLSKGYTDSQLDLIADYFASRTPVGGAK
>NZ_CP016448.1|WP_069038577.1|1627477_1627861_+|winged-helix-turn-helix-transcriptional-regulator
MDYDPELDKVFESVADYFGLLAEPARLKILHCLCDGERSVADVVDQSGLSQTNTSRHLNMLYRAGIVGRRKDGAMVFYKLIDPNFPSICRTVCIQIASGNSLNMPHRPSKASLKKVGKSLELASEQE
>NZ_CP016448.1|WP_069038578.1|1627863_1629195_+|sulfite-dehydrogenase
MSQITRRPGRIQRAPEGFLSPEQIREVSAGRRDFLRTAFASASLAVAGTSAARAADGDPAILTLPEHSTTLGRPVAERPYGAPSQFEAGLRRRESPGLTRVAGSSVSFSPLQGLFGIITPSGLHFERHHQGWHDIDPARHRLMINGLVKEARVYTMDDLMRLPSVSRIHFIECGANTGMEWGNVAVPTVQYSHGMLSCSEFTGVPLSVLLDDCGIDRKRAKFVLAEGADGSSMTRTISLDRALDDVLVAWGQNGEMLRPENGYPLRLVVPGVQGVSWVKWLRRIEVGDQPWATKDEAVHYIDLMPDGTHRQYTSIQECKSVITTPSGGQTLLDKGFHNITGLAWSGRGKVKRVDVSVDGGRNWRTARLETPVLSKALTRFNIDWVWDGSPAILQSRAIDETGYVQPTYAQLRAVRGTRSIYHNNAIQSWKLADSGDVSNVQVF

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Crispr_ID: NZ_CP016448_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_7

2816873-2817033

Orphan

Consensus_repeat	Method
GGGCATCGCTGCGCTCACGCCAACCTACGGTCTGGACCGGGCGGCGGCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_7

>merge|NZ_CP016448|7|2816873-2817033|CRISPRCasFinder
GGGCATCGCTGCGCTCACGCCAACCTACGGTCTGGACCGGGCGGCGGCACGGTGATGAACGGGGCGGTGGATGATCGCGGGGTGGAGGCGCGGCTGGACGGATGGAAGTCGGGCATCGCTGCGCTCACCCCAACCTACGGTCTGGACCGGGCGGCGGCACG

>NZ_CP016448|7|7|2816873-2817033|CRISPRCasFinder
GGGCATCGCTGCGCTCACGCCAACCTACGGTCTGGACCGGGCGGCGGCACG	GTGATGAACGGGGCGGTGGATGATCGCGGGGTGGAGGCGCGGCTGGACGGATGGAAGTC
GGGCATCGCTGCGCTCACCCCAACCTACGGTCTGGACCGGGCGGCGGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069039511.1\|2828095_2828428_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NZ_CP016448.1\|WP_069039504.1\|2814135_2814597_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP016448.1\|WP_069039500.1\|2805325_2808703_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|378297
NZ_CP016448.1\|WP_069039512.1\|2828786_2830229_+\|cytochrome-c-oxidase,-cbb3-type-subunit-I	unknown	unknown	gnl\|CDD\|237726
NZ_CP016448.1\|WP_069039513.1\|2830245_2830860_+\|cytochrome-c-oxidase,-cbb3-type-subunit-II	unknown	unknown	gnl\|CDD\|237725
NZ_CP016448.1\|WP_069039507.1\|2818580_2818907_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|200072
NZ_CP016448.1\|WP_069039503.1\|2813686_2814019_+\|YegP-family-protein	unknown	unknown	gnl\|CDD\|225956
NZ_CP016448.1\|WP_069039502.1\|2811245_2813531_+\|nitric-oxide-reductase-large-subunit	unknown	unknown	gnl\|CDD\|225795
NZ_CP016448.1\|WP_069039505.1\|2814809_2815409_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP016448.1\|WP_069039501.1\|2810560_2811253_+\|iron-sulfur-cluster-repair-protein-YtfE	unknown	unknown	gnl\|CDD\|236812
NZ_CP016448.1\|WP_083224043.1\|2804622_2805000_-\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP016448.1\|WP_069040666.1\|2815590_2816655_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378934
NZ_CP016448.1\|WP_069039509.1\|2822437_2825716_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NZ_CP016448.1\|WP_069040668.1\|2825818_2826268_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341391
NZ_CP016448.1\|WP_069039498.1\|2803523_2804618_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_CP016448.1\|WP_069039508.1\|2819783_2822441_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NZ_CP016448.1\|WP_069039510.1\|2826341_2828018_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235923
NZ_CP016448.1\|WP_069040667.1\|2819416_2819740_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP016448.1\|WP_069040665.1\|2808879_2810406_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP016448.1\|WP_069039506.1\|2817220_2818480_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069039511.1\|2828095_2828428_-\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	3.65027e-14
NZ_CP016448.1\|WP_069039504.1\|2814135_2814597_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.08162e-20
NZ_CP016448.1\|WP_069039500.1\|2805325_2808703_-\|transglutaminase-family-protein	gnl\|CDD\|378297	pfam09899, DUF2126, Putative amidoligase enzyme (DUF2126). Members of this family of bacterial domains are predominantly found in transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown, but they are likely to act as amidoligase enzymes Protein in this family are found in conserved gene neighborhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes).	0
NZ_CP016448.1\|WP_069039512.1\|2828786_2830229_+\|cytochrome-c-oxidase,-cbb3-type-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
NZ_CP016448.1\|WP_069039513.1\|2830245_2830860_+\|cytochrome-c-oxidase,-cbb3-type-subunit-II	gnl\|CDD\|237725	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional.	8.00708e-149
NZ_CP016448.1\|WP_069039507.1\|2818580_2818907_-\|thioredoxin-TrxA	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	9.66272e-53
NZ_CP016448.1\|WP_069039503.1\|2813686_2814019_+\|YegP-family-protein	gnl\|CDD\|225956	COG3422, COG3422, Uncharacterized conserved protein [Function unknown].	3.71084e-16
NZ_CP016448.1\|WP_069039502.1\|2811245_2813531_+\|nitric-oxide-reductase-large-subunit	gnl\|CDD\|225795	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism].	0
NZ_CP016448.1\|WP_069039505.1\|2814809_2815409_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	2.13708e-53
NZ_CP016448.1\|WP_069039501.1\|2810560_2811253_+\|iron-sulfur-cluster-repair-protein-YtfE	gnl\|CDD\|236812	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE.	3.63431e-128
NZ_CP016448.1\|WP_083224043.1\|2804622_2805000_-\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	3.25656e-39
NZ_CP016448.1\|WP_069040666.1\|2815590_2816655_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378934	pfam12727, PBP_like, PBP superfamily domain. This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.	4.23857e-70
NZ_CP016448.1\|WP_069039509.1\|2822437_2825716_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	9.28307e-133
NZ_CP016448.1\|WP_069040668.1\|2825818_2826268_+\|CBS-domain-containing-protein	gnl\|CDD\|341391	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	5.33482e-33
NZ_CP016448.1\|WP_069039498.1\|2803523_2804618_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NZ_CP016448.1\|WP_069039508.1\|2819783_2822441_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	4.76841e-24
NZ_CP016448.1\|WP_069039510.1\|2826341_2828018_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|235923	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP016448.1\|WP_069040667.1\|2819416_2819740_+\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	2.85948e-18
NZ_CP016448.1\|WP_069040665.1\|2808879_2810406_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP016448.1\|WP_069039506.1\|2817220_2818480_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0

>NZ_CP016448.1|WP_069040666.1|2815590_2816655_+|helix-turn-helix-transcriptional-regulator
MRIQIEPAWRFRNAEGREIDPLLFRVLAAVQRSGKLTEAARDVGFSYRHCWNLIRTWSAFFGTPLVELSQGKGAELTPLGEKLTWAAQRIQARLTPQLENLSVEIDREINAALMDTHPVLRLHASHGYAIALMPELIQRVAGVRLELQYLGSVDALASMSRGSCDLCGFHLPSGRVTPELAARLGRYLKPRVHRVIRLVTRTQGLFVAAGNPLNITSLKDLIRPDVRFINRQASAGTRLLFDLLLAEQSLDPDRISGYETVEFTHAAVAAHIASGMADTGFGVEAAATQFRLNFVPLAQEQYFLACRVETLELPSMQRMLDALRSPDFAAAVAGLPGYALNSPGDVMTVTEGLR
>NZ_CP016448.1|WP_069039505.1|2814809_2815409_-|cysteine-hydrolase
MTAITTLRDLTGLGHAPGSLHHAALIMIDCQNTYREGVMQLAGVEAALVEARRALDLARALGRPVIHIRHDAGPGTPYDVSASIGQISDIVAPQAGELVITKNYPNSFVQTSLDEELKRLDIKQLVLAGFMTHMCINSTARGAFNLGYSPTVIASATATRDLPLAGGGEVSAAALQAASLAALGDLFAVVACRADDLAH
>NZ_CP016448.1|WP_069039504.1|2814135_2814597_-|MarR-family-transcriptional-regulator
MTRYQNLRLERQLCFALYAATHGITRSYRVRLKAVGLTYPQYLVMLALWEEDGRSVSQLAQRLHLDSAAITPLLKRLEVAGFLERQRSPTEERVVQSFLTPAGRELEHAVARIQGEVACQAGLPEEAFMALCSTLHELTQRMADDPKVKRVAA
>NZ_CP016448.1|WP_069039503.1|2813686_2814019_+|YegP-family-protein
MAKFQLKKAANGEFHFTLLGSDDQSLLQSEMYKTRASAENGIESVKKNAADDGRYDRKKATNGKDYYVLKAGNGQVIGQSKMFDNAGAMEAAIAAVKGGAAGATVDDQAG
>NZ_CP016448.1|WP_069039502.1|2811245_2813531_+|nitric-oxide-reductase-large-subunit
MGDYRKLWFTLIGVLIVTFSLLGYYGVEVYRNAPPIPQQIVSEDGRVLYTHDGILDGQTAWQSVGGMQLGSIWGHGAYQAPDWTADWLHRELLAWLDLAAQDAHGKPYAELDADAQALLAARLKREYRRNTYDAATGAATVSTLRARAIERTADYYVQLFGDAPALQGSRESYAMKDNTLPDPQRRAQLAGFFFWTAWVAATERPGTSATYTNNWPHEPLIGNAPTAENVVWSVVSVVVMMAGVGFLIWGWSFLRRQDESDPAAPAQDPLSRVAPTPSQRALGKYLVLVVALFVFQVMMGGFTAHYTVEGQTFYGIDVSQWFPYSLVRTWHIQSALFWIATGFLAAGLFLAPLIHGGRDPKFQKVGVDVLFWALVVVVAGSFVGNYLAIAQIMPPELNFWLGHQGYEYVDLGRLWQIGKFVGVALWLVLMLRGIVPALRTPGGDKNLLALLTASVVAIGLFYGAGFFYGERTHLTVMEYWRWWVVHLWVEGFFEVFATTALAFIFSTLGLVSARMATAASLASASLFMLGGVPGTFHHLYFAGTTTPVMAVGASFSALEVVPLVVLGHEAWENWRLKDRAAWMAKLKWPLMCFVAVAFWNMLGAGVFGFMINPPISLYYVQGLNTTPVHAHAALFGVYGFLALGFTLLVLRYLRPQLAFGERLMQTGFWGLNAGLVLMIATSLLPIGLIQFHASVSQGLWYARSEEFMQQPLLETLRWVRTFGDVVFIVGALAVAWQVVSGVFGRSGRTPEPVGTLAGARR
>NZ_CP016448.1|WP_069039501.1|2810560_2811253_+|iron-sulfur-cluster-repair-protein-YtfE
MNLIEQSLGALARSIPGATRVFHEHKLDFCCGGKHSLQDAAAERGIDAQPIVERLGVLLSQATREARDWRTVPAAVLIEHILFRFHDRHREQLPELTRLARRVEQVHGDRPDCPTGLADHLTAMQHELESHMQKEEQVLFPMLARGQASALQGPVTVLRNEHDQHGEALQRLEALTDDITLPRGACNTWRALYTGLAALREDLMEHIHLENNILFEGLNAAPAESEAAHG
>NZ_CP016448.1|WP_069040665.1|2808879_2810406_-|nitric-oxide-reductase-transcriptional-regulator-NorR
MESLLLADLVSDLPPAVRLQRLVSSLRTHFGCGAVALLKLEEDSLRPLAVDGLVRETLGRRFVVGQHPRLATILSRRDITAFDHDSTLPDPYDGLLDTRVGEPLPVHDCMGTSLHVEGQTWGALTLDALQTGTFTEAARDDLRRFTLLVEAAVRVTRLEQDLHALRLSRGGERADAQGASADEAEIVGHSEVIQRLLHEMKVVADSELSVLLLGETGVGKELFARHLHRHSRRAAQPLVHVNCAALPESLAESELFGHVKGAFSGATADRPGRFEAADGGTLFLDEVGELPLTVQAKLLRALQNGEIQRLGADQPRRVDVRVIAATNRTLRDSVRDGAFRADLYHRLSVYPVPIPPLRERGSDVLLLAGRFLELNRARLGLRSLRLSPEAEDALCRYPWPGNVRELEHVISRAALKAVSRGAARTDIVSLPAELLDLDGVTTRAATPETCDTTSGAILPSMREAIDATQRRLVRAALDACAGNWADAARRLDVDPSNLHKLARRLGLK
>NZ_CP016448.1|WP_069039500.1|2805325_2808703_-|transglutaminase-family-protein
MSIHVALNHVTHYRYDRPVLLSPQVVRLRPAPHTRTPILSYSLRVTPAEHFVNWQQDPQSNYLARLVFPERTRELRIEVDLIAEMSVINPFDFFLEPAAEKIPFGYNEEQTRELFPYLVTLPLTRDNAPKFTRWVDDARMLFGSSGKPSVDYLVALIQQMQGDIRYLIRMEPGVQTPEETLQKGSGSCRDTTWLLVQVLRHLGLAARFVSGYLIQLTADVKSLDGPSGPEKDFTDLHAWCEVYLPGAGWVGLDATSGLFAGEGHIPLACSPDPSSAAPISGLTEKCETEFEHHMKVERVWEAPRVTKPYTDDAWSRIETLGHRIDTDLVQHDVRLTMGGEPTFVSVDDRDGPEWNTTADSPPDKPVKRLLGAALLAKLKARYAPGGLLHYGQGKWYPGEQLPRWSLSCFWRRDGEPMWTDPGLIADEAVDYKLTAEHCATFLNALSKRLEVDGKYVFPAFEDVWYYLWRERKLPVNVDPFDSRLEDPLERDRMRRLFHDGLDSEVGHILPLARTPAGNAWQSGPWFLRDERCFLIPGDSPMGYRLPLDSQPWVSAAEYPWVHAPDPVQRQVPLRPQIDIAVRMQKPEDDDTTGIDFAPAGPAATRVSAPDRKPEALESAGWITRTALCAQVRHGVMYLFMPPLPTLDDYLELVTAVELTAAACGHPVVLEGYEPPRDPRVEVLRITPDPGVLEVNIQPYHSWDDMVAGTTFLYEAAHETRLGTEKFMIDGRHSGTGGGNHFVLGGATVADSPFLRRPDLLRSMISYWHNHPALSYLFSGLFIGPTSQAPRIDEARNDSVYEMEIAFAEIERRSRDAGYTPPWLIDRILRNLLVDATGNTHRAEFCIDKLYSPDGATGRLGLLEMRGFEMPPHSRMSLTQQLLLRALIARFWQQPYAPPKLKRWGTELHDRFMLPYFVWEDMRDVVDDLRAFGYPMELEWFAPHFEFRFPRMGQFSARNVLVELRSALEPWHVLGEEGGAGGTVRYVDSSVERLQVKVQGLVDDRHVLAVNGRRVPLSPTGRVGEYVAGVRYRAWQPATCLHPTIPPHAPLVFDLVDDWMKRSMGGCQYHVAHAGGRNHESFPVNSYEAEGRRLARFFAMGHTPGHVSAPPEDRNPNFPFTLDLRR
>NZ_CP016448.1|WP_083224043.1|2804622_2805000_-|YbaN-family-protein
MLWRLLAGVAVLLGVIGAVLPVLPTVPFLLLAAWAASRGWPELEARLLAHPTYGPYITNWREQGAIPRRAKWLASAMMLFSATTLWFSPVPGWVRGSVYVMLMVVAGWMWTRPEPAVRPLPQGPP
>NZ_CP016448.1|WP_069039498.1|2803523_2804618_+|alkene-reductase
MTTLFDPLKLGDIALNNRIVMAPLTRNRALPGQVPGPLTVEYYTQRASAGLIIAEATQVSAMGQGYLDTPGIHSAEQVAGWRKVTDAVHAAGGRIILQLWHVGRISHTSLLPGGASPVSSTSRRPNAQCFTRDGFVDVSAPRALRDDELPGLIDDYRRAARNAIDAGFDGVEVHSANSYLLEQFLRDSVNDRSGPYGGPLENRARLLLEIMAAVVAEVGAGRTGVRLSPATTFCDTPLDSNPQALHSHVLDRLSALGIAFVHMIEGETGGERAPASVKPPIDYAALRARFNGGWIANNGYDRQMAMDAVASGGIDAVAFGRPFISNPDLVRRLRDNAPHNDLRADLMYGGGAAGYTDYPALGAA
>NZ_CP016448.1|WP_069039506.1|2817220_2818480_-|transcription-termination-factor-Rho
MHLSELKALHVSQLLEMAQSFEIEGANRLRKQELVFAILRNRAKKGESIFGDGALEVLPDGFGFLRSPEASYLAGTDDIYVSPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKVDRVNSEPPEATKHKILFENLTPLHPTETLVLERDMRGEENTTSRVIDMIAPIGKGQRGLLVAPPKTGKTVMMQHIAHAITANHPEAMLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRFFGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRVYPAINVNRSGTRREELLLKPEILQKIWILRKLLYNMDDLEAIEFLLDKIKATKSNGEFFDAMRRG
>NZ_CP016448.1|WP_069039507.1|2818580_2818907_-|thioredoxin-TrxA
MSEHIHHVTDASFEAEVVKADLPVLVDYWAEWCGPCKMIAPILDEVARDYAGKLRVAKVNIDENQDTPARFGIRGIPTLMLFKDGNVEATKVGALSKSQLTAFLDSHL
>NZ_CP016448.1|WP_069040667.1|2819416_2819740_+|ferredoxin-family-protein
MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPAEAIFAEDDVPSDQIHFIKLNAELSAEWPAIIERKEAPADADEWVKVKDKLGMLER
>NZ_CP016448.1|WP_069039508.1|2819783_2822441_+|PD-(D/E)XK-nuclease-family-protein
MSTAGFETLCLPADAALFARLARLLIDRHGDALADCDLLLPVMAHAPVLRGALLAEAGHALFMPRMLTPALLAARWQGDAPVDPHPRRLLHLVAQLRQQTWLGDVDPWSAAQELLELADALAALPAPPDENALQQGFERAHGLADSAALSLEARLVHAVWHSDCTGTPGHARAVTQALMRAAGAARRPLIHLSARVEPAPAWLELHAARVPVLNVLATRALTDTPVARVLHAAWPPVSPPVLTHAPSRDDALELAGRVRLVGAQSLEQEAQCAASCIAGWLSEGRRNIALVALDREAARRTRALLERRQVLLADETGWKLSTTRAAATVDALLQCFASDGYHRDLLDLLHSPHVAGSLDRDDHAQAIAAIDDWVVRRNHVDGLHALLTDAGREFAGCPAGRLIDALSRAFALMPTHNAPASFRVERLLAALDALGARAALAQDAAGAQVVNLLEQLRADSSGVALDLSFADWRKWLNSEFEQALFRDSAIDSPVVLTPLAATRLRRFDAVYVIGADSRHLAPVRLRGVLGHEGLRRELGLPDSQVAAGQLRDDLAGLIACSDQTVFSWQTQRNGEANLPGVDLQRLDLVLQRAGLPSAICSAPSLADPPPLPELVVSSAPVLDPARVPSRLTASGLADLMACPYRYYARHVLGLGAGDEVEDAMGKGSVGELVHRVLHDFHVAHPRLADAAPPALADALRAQIAAAFDGAIARNFQEHAWADRLHDRADAYIAWAVQRESDGWLFDSGEARRAHVLELPDGAALSLEGRIDRIDRNAEGDVALLDYKLRSAERVRKTLQADDVQLAFYTVLEGGAVSEAAYLALEEDVPVAFIQDDPPAAAQALLSLVSELFPALRNGASLPAHGDEAACLHCDMRGLCRKDWLA
>NZ_CP016448.1|WP_069039509.1|2822437_2825716_+|UvrD-helicase-domain-containing-protein
MSREDDLRALDPARSVVVEACAGSGKTWTLVSRLIRLLLAGAQPGDILAITYTRKAAREIEERLQHWLAELAVADDQRVSAFLAERGLNAQRDPALIARARALFEQVADARPGLTVNTFHGWFSSLLGAAPLNSGLRGLQLSERTAQLRDQAWAALMRRAGRAPDSELSLALRSLLGRCGVAGTRALAGALVDRRAEWEAWLAAQGGLAGAVDHLRQFFGADAEAPVDVLAGDELLRRRALDLARLLGQGTEAQQRKATAIEQACVQVEAQLFFAGLRAQLLKQDGEPASFKPGKALEKVGVADAVLALNEQVAARLVHCLNAQSDLAAWALNEQGLQVAAALLEAYDRIKQNAGVLDFGDLEWHAARLLSDAQTGPFVQARLDARYRHLLLDEFQDTNPLQWQVLMHWLDAYAPGQVQPVVFVVGDPKQSIYRFRRADPRIFTHAARVFEQRFGAILLQRNETRRSSPAVVSVVNAVFGDMDVFEGFAPHSTTRTDLPGRVEVLPAFGHEADAKAEADAQAAATGLRNPLRQPRMAIEDSRRRREADALCARLKGMVGRLAVRDAHTGDTRAARYGDMMILLRRRTGLAVYEAALRAHGIPYFGASRGRLLDTLEASDLLALLRFLAAPADALSLAHVLRSPLFAFDDAQLLDLTRDGAARFWPMLRARRAGSDQAYARAAALLEGWLDAATRLPVHDLLDRVFDQGALMPRYAASVDAMAWPGVRANLEAFIELALKVDSGRYPSLPRFIDELTRLRNEDDEAPDEGLILGEDPSRGRVRVLTIHAAKGLEAPIVWLADAVARGRTDSGARVLLAWPPGDAAPGHLSLLQNKGNQGHARAAFIDAEARAAAREDANLLYVALTRARQVLYVSGVSPSKGSSAGSWLDRVTASLGGCVDAVPTDGGGMRLEHGVLADCVDDAPDDPVVPVVMADAPMLPAIGERRPLVALDPVQLWGVGLHSWLEALAGGEPPPARPAGLDAAQWRDLEAIARRLVASDSLQRFFDPAQHRWSANELEFVLPDGQPGRIDRLVEFDDDIWILDYKSGQGDRFAETYTAQLAGYAEAVAAIRPGKAVHAALIRPDGALDVRF
>NZ_CP016448.1|WP_069040668.1|2825818_2826268_+|CBS-domain-containing-protein
MQVHEILRIKGTVLYTVVPSQSLDNAVATMADLDVGSLVVMEHGLMVGMLSFREVLRALRTAGGGWQTLTVADVMQRDPATAHPDMEVDELRRLMLERHCRYLPIMEGDTLMGVLSFHDVARAMLEEQSFENRMLKSYIRDWPMDDASG
>NZ_CP016448.1|WP_069039510.1|2826341_2828018_+|long-chain-fatty-acid--CoA-ligase
MDKVWLKSFPAGVPAEIDPSEFRSIGDVFERSCREFADRDAYVCMGKAISFTETERLSAAFAAYLQSVLGLAPGSRVALMMPNVLQYPVAMFGALRAGYTVVNCNPLYTPRELEHQLVDSGAEVIVVLENFASTLQQVLARTPVRHVVVTALGDMLPAPKGWLVNFVVRHVKKMVPLFELPDAVRFNDALKLGRGHALNPVNVVHEDIAFLQYTGGTTGVAKGAMLTHRNIVANMLQADAWIKPFLTGQQIVITALPLYHIFALTANCLVFLKLGARNVLITNPRDIPGFVKELSKHRFTAITGVNTLFNALLNNADFARVDFSALRVSLGGGMAVQRAVAERWKKVTGRPLIEAYGLTETSPAVCINPPDQAEFSGAIGLPVPSTEISIRNDEGVELPMGEAGELCVRGPQVMKGYYRRPEETAKVMTPDGYLRTGDVAIVDETGFVKIVDRKKDMILVSGFNVYPNEVEEVIVDCEGVLECCVIGVADEHSGEVVKAYVVRKDMTLTTEQIIVHCRTQLTAYKIPRQVEFRDELPKTNVGKILRRALKEETQKTRP
>NZ_CP016448.1|WP_069039511.1|2828095_2828428_-|H-NS-histone-family-protein
MSGQSYDELMARISDLQQQAEVVRRAELESVIADVKAKIKKYNLSAADVGLSGSSAKRAARPTTGAKVKIAPGKYRNPENGEIKEVGAAGRKPGWLASMTADQLNAARVN
>NZ_CP016448.1|WP_069039512.1|2828786_2830229_+|cytochrome-c-oxidase,-cbb3-type-subunit-I
MKTAATGGVGETYDYRVVRQFSLMTVVWGIVGMLVGVIIAAQLVWPELNFGEWFHFGRLRPLHTNAVIFAFGGCALMATSFFVVQRTCHTRLFAPWLAGFVFWGWQTVIVLAAITLPLGYTQGKEYAELEWPIDILITLVWVSYAIVFFGTIVKRKTPHIYVANWFYGAFILAVAMLHLVNSAAIPAGFWKSYSAYAGVQDAMIQWWYGHNAVGFFLTAGFLGMMYYFVPKQAERPVYSYRLSVVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGIMTLSGAWHKLRTDPILKFLITSLSFYGMSTFEGPMMSIKTVNALSHYTDWTIGHVHSGALGWVAMISIGSIYYLIPRLFGQEKMYSVPAISIHFWMSTLGVVLYIAAMWIAGVMQGLMWRAINDDGTLTYTFVESVKATYPFWFIRFLGGALFLAGMFVMAWNVWKTIAGQKAYNAPVIAPAAAHA
>NZ_CP016448.1|WP_069039513.1|2830245_2830860_+|cytochrome-c-oxidase,-cbb3-type-subunit-II
MAASKHELIERNVGLMAILTVLVIAVGGLVEIVPLFFQHSTTEPVEGVKPYEPLQLAGRDIYVREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDEWHRVHLINPRDVVPESNMPAFAFLERPVKASTIEQHMRALARVGVPYSEEQMAGAAESLKGKTEMEALIAYLQGLGTAIKRVN

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Crispr_ID: NZ_CP016448_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_8

3067121-3067216

Orphan

Consensus_repeat	Method
CCAGCCCGTAGGTTGGGGTGAGCGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_8

>merge|NZ_CP016448|8|3067121-3067216|CRISPRCasFinder
CCAGCCCGTAGGTTGGGGTGAGCGCAGAGATACCCGACAAATCGCGTCGAGCCCGCCCGACGCATCGTCCAGCCCCGTAGGTTGGGGTGAGCGCAG

>NZ_CP016448|8|8|3067121-3067216|CRISPRCasFinder
CCAGCCCGTAGGTTGGGGTGAGCGCAG	AGATACCCGACAAATCGCGTCGAGCCCGCCCGACGCATCGTC
CAGCCCCGTAGGTTGGGGTGAGCGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069039688.1\|3063967_3064786_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP016448.1\|WP_069039690.1\|3066337_3066985_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP016448.1\|WP_069039684.1\|3059391_3060474_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NZ_CP016448.1\|WP_083224052.1\|3060470_3061487_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039696.1\|3074675_3075215_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225675
NZ_CP016448.1\|WP_069040705.1\|3067274_3070124_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP016448.1\|WP_069039697.1\|3075614_3076544_+\|DUF808-domain-containing-protein	unknown	unknown	gnl\|CDD\|377542
NZ_CP016448.1\|WP_069039692.1\|3071830_3072358_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180777
NZ_CP016448.1\|WP_069039685.1\|3061483_3062347_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP016448.1\|WP_069039695.1\|3074008_3074638_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP016448.1\|WP_190295020.1\|3075238_3075388_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039683.1\|3058858_3059395_-\|MxaK-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039686.1\|3062343_3063366_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP016448.1\|WP_069039691.1\|3070359_3071709_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP016448.1\|WP_069040706.1\|3076562_3077279_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235405
NZ_CP016448.1\|WP_069039687.1\|3063574_3063790_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039694.1\|3073455_3073878_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341391
NZ_CP016448.1\|WP_069039693.1\|3072392_3073310_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP016448.1\|WP_069039682.1\|3057921_3058848_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NZ_CP016448.1\|WP_069039689.1\|3064841_3066341_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069039688.1\|3063967_3064786_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	5.78396e-31
NZ_CP016448.1\|WP_069039690.1\|3066337_3066985_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.7184e-58
NZ_CP016448.1\|WP_069039684.1\|3059391_3060474_-\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	1.95856e-15
NZ_CP016448.1\|WP_069039689.1\|3064841_3066341_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	9.61637e-41
NZ_CP016448.1\|WP_069039692.1\|3071830_3072358_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|180777	PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional.	1.14095e-73
NZ_CP016448.1\|WP_069039685.1\|3061483_3062347_-\|VWA-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.47918e-07
NZ_CP016448.1\|WP_069040705.1\|3067274_3070124_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP016448.1\|WP_069039696.1\|3074675_3075215_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	1.96757e-14
NZ_CP016448.1\|WP_069039697.1\|3075614_3076544_+\|DUF808-domain-containing-protein	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	8.9466e-136
NZ_CP016448.1\|WP_069039686.1\|3062343_3063366_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.57243e-45
NZ_CP016448.1\|WP_069039691.1\|3070359_3071709_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.4938e-121
NZ_CP016448.1\|WP_069040706.1\|3076562_3077279_-\|hypothetical-protein	gnl\|CDD\|235405	PRK05320, PRK05320, rhodanese superfamily protein; Provisional.	9.37346e-105
NZ_CP016448.1\|WP_069039694.1\|3073455_3073878_+\|CBS-domain-containing-protein	gnl\|CDD\|341391	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.14465e-29
NZ_CP016448.1\|WP_069039693.1\|3072392_3073310_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.20932e-09
NZ_CP016448.1\|WP_069039682.1\|3057921_3058848_-\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	0.000311459
NZ_CP016448.1\|WP_069039695.1\|3074008_3074638_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.68587e-54

>NZ_CP016448.1|WP_069039690.1|3066337_3066985_+|response-regulator-transcription-factor
MTDTPVSVLLVDDHAVVREGYRRLIERHPPLTIAAEASSGEEAYRRYVELAPDVVVMDITLPGASGIQTLQRIVQRDRDARVLIFTMHRDATFVEKALESGALGYVTKSSPPDLLVEAICAVYHRRQTLSPDVQAELAALRRAGTTAKNPLAALSAREFEILRMLIAAKSREDIADTLHISVKTVFNIHYQIKSKLGVSTDIELMHAARQLKLID
>NZ_CP016448.1|WP_069039689.1|3064841_3066341_+|sensor-histidine-kinase
MKRGANLKLTLMLRITLLAVAIGALTSAGLIWRTTTRLQAEAVRNADLVSRLITDQMSRQLSGLELNIGKPDLARFAEFSEVTRLCVQYFDLEGALSANSCQQESPPSQDAAQAPAWFRELIRYMLNRRIDRSADTAVVDGEAPGVKVGRRVLWYQPYGVGLDVGRAPGLKMGEVLIRVDADRESAAVWNEITRLLMWAVLALLAFNVLIYVSISRALRPAAAVLDGLGKLERGDLDARLPAFELIEFDRIGSVFNAMAGNLKQKTQEQQRLAQRLLTVQEGERRRLARELHDEFGQSLASISAEAACVVDEAGRPQPQPDALRASGQTVLRTVGGMMESLHGILRELRPVGLDEYGLIAGLDRLVRMWDAQARGRCSYRLDVSGDFADVPDDIAINLYRIVQECLTNAAKHSDATAVDVQLERRAASDDIRLRVSDDGVVRGPDLPAPQGSSGGFGLIGVKERVIALGGRVQWSAREPQGLAVDIVVPWQLTDGGLAA
>NZ_CP016448.1|WP_069039688.1|3063967_3064786_+|helix-turn-helix-domain-containing-protein
MNGRASAQRGAVDEAPAGSLHRARLLVTTIARGSRRGSLLTELVARTGLPRATIHRVLDMLIDIGWVERDPLTLRFNLGRDLAALGYSAVSRQPVERSAATELSALAEALDQVVFLNIRSGLDSVCIGRYDTRSQVQVGRGDVGLRTAFGVTQSCIAMMSRLPEAEVWEVVRINLSRFHRVERYDETRHRAAIEFALKHGYSAFDGMVLDRSTSGMGVPICDPGGYPVAGIGTTFISAWLDEAGRAACRAQMLAAAARIAQRLFGLPAGVAD
>NZ_CP016448.1|WP_069039687.1|3063574_3063790_-|hypothetical-protein
MAPLFGAQHRTLQDQSDIRAEHPGFIESRDFFFLTTIEQCSDLTVSHTGGSPGCETPSATAKRIDGLQGRT
>NZ_CP016448.1|WP_069039686.1|3062343_3063366_-|MoxR-family-ATPase
MIREEHLQDWRDAALSVETEVRKAVIGQDNVVRLINVALFARGHVLLEGDVGVGKTTVLRAFARAIGGDFERVEGTVDLMPNDLVYHTYVDADGKPRIEPGPLLRHGERLTTFFFNEINRARPQVQSLLLRAMAERTVSAFNREYSFPHMTVFADRNKVEKEETFELASAARDRFMFELRMETPRDKAVRRALVFDTAFHDVDALINQVTPGILDWQSLNSMAAAIQHSVSASEALERYVMDLWDASQNPAAFDVRIDGVDMKKLILAGASPRGMSALLRAARVVAWMAGRTHLVPDDVQAILPSTLGHRVFFTPVYEMRRAQIADTLVAQIIEKVATPR
>NZ_CP016448.1|WP_069039685.1|3061483_3062347_-|VWA-domain-containing-protein
MSDADEVREFHYRLPHRAAGPRPGSHPGSSLGAGQEFVSHMSLYDRPDPRRLDLRASLRSTTGDWLVRVNRQRVGVTVQVLVDVSASMGFGARRRKLDVAADFVESLAHSAFRIGDALGMLAFDQRERAELCVPATLSRGLGSVMADSLRQCTSAPGGIEGLEDALQQLVGREALVFLVSDFHWPLERLGGALDLLSHAFVVPVIVWDPAETEPPPHDAIAPLRDAESGVRRTLFMRPKLRTQWRDAVAARRAELDAFLSARDLRPFFIHGAFDAEAMSDYFFEATA
>NZ_CP016448.1|WP_083224052.1|3060470_3061487_-|hypothetical-protein
MTPLIRASLIASLLLAQGAFAQTAPAPAADAVSGDVSNTLSIQAEAAADGAPTAAPASPRGVAPTPAAAPQGRPAQVVQPRAYGHTLGDLLTQRVRLEIDGKPVELTKPPAPGRVGVWLERRPTRIERDTDGQRWLVIEHQLINAPQALVALALPALDLQTSGGLLGVAAWPFSAAPLTPRNVFGEGALEALQPDRGAPAVDTTAIRQQIALWGGLCLAALLAWGGWLGWRSWRAGRSQPFARALREVNALRSLTDDAPEAWQALHRAFDRTAGRTLQPASLPRLFERAPQYAPLRADIERFYAQSAALFFGDGPPADALPLRTLARRLRDIERRHEA
>NZ_CP016448.1|WP_069039684.1|3059391_3060474_-|VWA-domain-containing-protein
MNIGAIDFAQPWALLALPLAALPLLRRRRDTLLFPTLDWLPRDRAGRIAGFAWRALAVFALAAIVIALAGPGSPETTVTRTGRGAEILILMDRSRSMDAKMKPADWRTIDPHSMLYQVESRGEPKSAVARDLLSKFVEQRPDDRFALMFFSAGPMNVVPFTQHDAVVQAGIKAGGLGRGLSDTDVGRALTAAIDSFDARAYTGSRIILLVTDGGTHLDEPTRKRVREGLQANRIALHWLYLRTLNAPELDAEASAPPPQADGDDPAAIEIRNAYYAQESIAEVSLHRFFQSLPVTYRLYQADSPEDLAKAVAEVGRQQNFPLDFDERVPRQDHSRLFLSLAALCCALLLVYRSLLLRSWL
>NZ_CP016448.1|WP_069039683.1|3058858_3059395_-|MxaK-protein
MKRRTVHLIFGATALLTGVAAGWQTTRLWQAERVNAAIAAAGSLDADLPEAQFAQALALSRGADNEAATRAWKGLIAGERDDLRQGARYNLGNLHLREALAHGEADVANALPLVELAKQRYRDALRERPDDWDARYNLERALWLAPEIAQAAAAADDGPAPPKERVVTTLQGVRLDLP
>NZ_CP016448.1|WP_069039682.1|3057921_3058848_-|VWA-domain-containing-protein
MRTRTFLRNLLASLRERDARTLIAALALLVFAALLPPVNLPRDSWDTIVVFDLTQSMNVEDYELDGMPVSRLAYARESAKRALRELPCGSRVGWAGFAEYRTLLLLAPIEVCAHYGDLIASLDQIDGRMRWGNSSEVAKGVFWSVRAAKEIGDTPGVVFVSDGQEAPPLRDGDKPGFDDIKPGDIRGWIIGAGGDAARPIPKSDDDGRPVGYWKASEVIQRELRSADGKRVPGTEHLSALRETHLRAIAQQVGFDYATLTDADTLTRAMKHADAAVSRPVPTDLSWLPAALALIVLIARFRPEARGPA
>NZ_CP016448.1|WP_069040705.1|3067274_3070124_-|excinuclease-ABC-subunit-UvrA
MDWIRIRGARTHNLKNINIDIPRDRLTVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPHCPEHGAPLAAQSVSQMVDAVLEMPEESKVAILAPVVSERKGEQVELISELRSRGFVRVRLDGRMMDIDALPKLDKNIKHTIDVVVDRLKVRPDMRQRLAESIETALQQAEGRAIALDMDSDAEQLFSARFACPVCGHSVSELEPRFFSFNNPAGACTSCDGLGMVTFFDPVRIVAHPHLSLASGAIRGWDRRNQFYFQLLSSLAGFYKFDIDTPFDELDATLQAIVLNGSDKVRIPFRYLSESGRATIREHVFEGVVPNLERRYRETDSVAVREELGKYRNTKVCPDCKGTRLRSDARHVRVADHTLPELAGLPLRACKAIFDDMELDGARAAIAARIMREVAARLGFLIDVGLDYLSLDRSAESLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNARLLGTLSRLRDLGNTVVVVEHDQEAIEMADHVVDMGPGAGQHGGEVIAQGTPADIEACEASLTGAYLSGRKQIAVPSSRTSAKDDWLHIRGARGNNLHGTDAAIPVGLLTCVTGVSGSGKSTLINDTLYAAAAHHLYGSAALPAAHDAIEGLDLFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFAGVPEARSRGYGPGRFSFNVKGGRCEACQGDGLVRVEMHFLPDVFVPCDVCNGRRYNRETLDIRYKGKTIHDVLSMKVTEARDFFDAVPTVARKLETLVEVGLGYIGLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFHDVDMLLGVLGRLRDAGNTIVVIEHNLDVIKTADWIIDLGPEGGAGGGLIVATGTPEQVAAEPASHTGRYLAPLLEKDARRQLGAAAG
>NZ_CP016448.1|WP_069039691.1|3070359_3071709_+|MFS-transporter
MTRTELRAGAALAFIISLRMLGLFLVLPVFAVFARTLPGGDNIFWVGLAFGMFGLAQGVMQIPLGAASDRFGRKRIIVIGLLLYAAGSAMAAWAPDINWMIAARILQGSGAISAAATALVADLVRDEHRTKIMAVIGTSIGLVFAGSLVLAPALYGWIGMEGIFLLIGGLALAGIPLLLFVVPDPEHAPVVKPAPFARVLGDRQLMRLNFGMFVVHMVQMAMFLMVPLALVQVMDLPVAEHWTLYFPIVIASFICMIPAIIWAERKSRVKTVFLASIVTLIVSQVMFLLHLDLALVLIGGLFVFFVAFNLLEATLPSLVSRIAPPDAKGAALGVFNTAQSFGAATGSAVGGAIALRFGEDGVYLFCTVLAVVWLLWARSMKPPPVVALREYAIGDHVDLDRLRDQINDLPGLREVRIEAERRMAFLKVNLELWDEDVVRRLLDQPVAGT
>NZ_CP016448.1|WP_069039692.1|3071830_3072358_+|single-stranded-DNA-binding-protein
MASVNKVILVGNLGKDPETRYAPNGDAICNITVATTDSWKDKATGEKKEMTEWHRVAFFGRLAEIAGQYLRKGSAVYVEGSLRTRKWQDKDGNDRYTTEIRADQMQMLGSRQGMGGGGAGSEGYSGGAGGSGGGDDFDQSPRQAPAARAPQKPAPQSAPASSSGGFGGMDDDIPF
>NZ_CP016448.1|WP_069039693.1|3072392_3073310_-|DMT-family-transporter
MSSTEASPSSRLGGYLAAAGTVAIWTGFILVSRMGGKSALTPYDTLALRLGTAALILLPFAGSLPRGAWRDVRLWVLAMMGGLLYGVLAFAAFKFAPAAHGAILLPGMQPFLIAAVAWAISGARPGSASVAGLVFIAVGIACVARHELVGHGSWTPDLLFGDALLLGSSLAWAIYSVLARKWAYDPWTLTRFVALASALVFLPVYLLWLPKALDAVPPSMLALQGLYQGVAVTIVAMVLFLKAVAVLGAQRTGALVALVPVIAGVLAAPLLGEALSGWLIAGLLFVSAGAFVAVRPGRKKTNGAP
>NZ_CP016448.1|WP_069039694.1|3073455_3073878_+|CBS-domain-containing-protein
MKKRCIELVIKDQDPLLLSTGQTVGDACRRMWERRVGAVLVVNDQGALAGIFTGRDAVRILAEAHDGPDTRLAVAMTPNPRTIGPAETSLDALRAMSDGGYRHLPVVEGGRILGVVSRGDFNGVEFERLGDETSLWERIC
>NZ_CP016448.1|WP_069039695.1|3074008_3074638_+|trimeric-intracellular-cation-channel-family-protein
MPRFQLLIAAIEFAATLAFALSGFIEAARRRMDVVGVFAVAFITAFGGGTVRDVLLDRRPFFWVEHQAHVWLIFLLSLAAVPWLRARHHRFTERAILIPDALGLGLFTVTGVGLAYEAGMPVFVSAMMGVITGVFGGVMRDVICNEVPYVFRDHRPYALCAFVGAWAYLGMNALDVTPLVSLGVAVMLIAGLRLLAVLTGWSVPGWRED
>NZ_CP016448.1|WP_069039696.1|3074675_3075215_-|glycine-zipper-2TM-domain-containing-protein
MKQTARKIAGCAGLITCCVMLAACDPQSTFPIGPQSGSTEPERQERAASETRKSGEPRTVAAKPAPAVRADLGEVIAVEPIVAEGEASGVGAAVGGVVGGLLGNQIGSGSGRKVATAVGAVGGAVAGHTIEKNRNEHVSGYRVSVRMDNGEQRSFTEGADTAVRAGDRVRVVDGSLQRT
>NZ_CP016448.1|WP_190295020.1|3075238_3075388_-|hypothetical-protein
MSAAQLLMCALMVIATVALIVTGPDDGPVEQAAAAASESLLSLTRILNH
>NZ_CP016448.1|WP_069039697.1|3075614_3076544_+|DUF808-domain-containing-protein
MAGASLLALIDDIASVLDDVSVLTKVAAKKTAGVLGDDLALNAQQVAGVKADRELPVVWAVALGSVRNKLILVPAALAISAFVPAAVTPLLMVGGLFLCYEGFEKLAHKFLHSPDEDVAQRKEHLAALADAEIDLVALEKDKIKGAIRTDFILSAEIIAITLGTVADAPFGTQVAVVAGIAAIMTIGVYGLVAGIVKLDDGGLYLSRSGSAPLRAFGRGILTAAPWLMKFLSVAGTAAMFLVGGGILTHGIAPLHDAIGHLTETVTQSAGTVAGVLLPFVADALTGIVAGALTLAVVLGVRKLRGPQAA
>NZ_CP016448.1|WP_069040706.1|3076562_3077279_-|hypothetical-protein
MPRFANIAAYRFVRLDERDTLRRRIHEAAQARSLLGTVLLATEGINLFLAGAADDLRAFLAELAQDPRLAGLDAKWSYSDTVPFKRLRVRLKKEIVTVGAPDFDPAETPAPYLPPAELKRWYDEGRRFVIIDTRNRWEVEQGSFDHALDPGVDSFGQFPAALERYADLKDTPIVTFCTGGIRCEKAAPLMKKAGFTQVYQLEGGILRYFEEVGGAHWHGHCVVFDERGALKPDLTPAG

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Crispr_ID: NZ_CP016448_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_9

3173518-3173633

Orphan

Consensus_repeat	Method
GGCTTCGCGGGCGGCGAGCAGTGCTCGCCGAAACCCCCGCTCCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP016448_9

>merge|NZ_CP016448|9|3173518-3173633|CRISPRCasFinder
GGCTTCGCGGGCGGCGAGCAGTGCTCGCCGAAACCCCCGCTCCGTTCCACGGCTGGCCCTACATGGCCAGCCGGCTTCGCGGGCGGCGAGCAGTGCTCGCCGAAACCCCCGCTCCG

>NZ_CP016448|9|9|3173518-3173633|CRISPRCasFinder
GGCTTCGCGGGCGGCGAGCAGTGCTCGCCGAAACCCCCGCTCCG	TTCCACGGCTGGCCCTACATGGCCAGCC
GGCTTCGCGGGCGGCGAGCAGTGCTCGCCGAAACCCCCGCTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069039772.1\|3184293_3185328_+\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|181606
NZ_CP016448.1\|WP_069040716.1\|3170205_3171069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_190295027.1\|3165676_3166012_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP016448.1\|WP_069040715.1\|3166278_3166893_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039766.1\|3174886_3176335_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP016448.1\|WP_069039769.1\|3182176_3182923_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP016448.1\|WP_069039762.1\|3168266_3169406_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP016448.1\|WP_069039764.1\|3171264_3173445_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173870
NZ_CP016448.1\|WP_190295026.1\|3165418_3165580_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039768.1\|3181337_3182099_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP016448.1\|WP_069039767.1\|3178660_3180163_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP016448.1\|WP_069039765.1\|3173839_3174817_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP016448.1\|WP_150123952.1\|3161679_3162573_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_083224059.1\|3176295_3178356_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182342
NZ_CP016448.1\|WP_069039760.1\|3163101_3165273_-\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP016448.1\|WP_069039771.1\|3183439_3184159_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP016448.1\|WP_069039761.1\|3167062_3168256_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
NZ_CP016448.1\|WP_069040718.1\|3180360_3181317_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP016448.1\|WP_069039763.1\|3169582_3170209_-\|LON-peptidase-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366967
NZ_CP016448.1\|WP_069039770.1\|3182937_3183375_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069039772.1\|3184293_3185328_+\|isocitrate-dehydrogenase	gnl\|CDD\|181606	PRK08997, PRK08997, isocitrate dehydrogenase; Provisional.	3.55542e-158
NZ_CP016448.1\|WP_069039770.1\|3182937_3183375_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	2.37841e-99
NZ_CP016448.1\|WP_190295027.1\|3165676_3166012_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	0.000723113
NZ_CP016448.1\|WP_069039766.1\|3174886_3176335_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.79374e-58
NZ_CP016448.1\|WP_069039769.1\|3182176_3182923_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.79239e-11
NZ_CP016448.1\|WP_069039762.1\|3168266_3169406_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	2.33875e-35
NZ_CP016448.1\|WP_069039764.1\|3171264_3173445_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173870	cd08505, PBP2_NikA_DppA_OppA_like_18, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP016448.1\|WP_069039768.1\|3181337_3182099_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	1.6408e-134
NZ_CP016448.1\|WP_069039767.1\|3178660_3180163_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	1.46513e-81
NZ_CP016448.1\|WP_069039765.1\|3173839_3174817_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.06312e-66
NZ_CP016448.1\|WP_083224059.1\|3176295_3178356_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
NZ_CP016448.1\|WP_069039760.1\|3163101_3165273_-\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP016448.1\|WP_069039771.1\|3183439_3184159_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	1.25399e-121
NZ_CP016448.1\|WP_069039761.1\|3167062_3168256_-\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	1.53501e-126
NZ_CP016448.1\|WP_069040718.1\|3180360_3181317_+\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.53017e-90
NZ_CP016448.1\|WP_069039763.1\|3169582_3170209_-\|LON-peptidase-substrate-binding-domain-containing-protein	gnl\|CDD\|366967	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain. This domain has been shown to be part of the PUA superfamily. This domain represents a general protein and polypeptide interaction domain for the ATP-dependent serine peptidase, LON, Peptidase_S16, pfam05362. ATP-dependent Lon proteases are conserved in all living organisms and catalyze rapid turnover of short-lived regulatory proteins and many damaged or denatured proteins.	1.35028e-32

>NZ_CP016448.1|WP_069039764.1|3171264_3173445_+|ABC-transporter-substrate-binding-protein
MIRLRPLHRTLCRLLAASCASVLLSGCGEVWNNPYPAAERGRNILYTAFTDRPKHLDPVQSYSENEITFTAQIYEAPLQYHYLKRPFELTTATAEAIPQPRFYDRDGRELAADAPAADIAESVYDIRIKPGIRYQPHPALARDEAGNYRYHSGGPGERLTLYDFEQTGSRELEAADYAYQIKRLAHPGLHSPIFGLMSDYIVGLKEFGDTLKDAAKTLPPGAWLDLRQHALPGVEVIDRHTYRIRLKGKYPQFLYWLAMPFFAPVPWEADLFHAQPGMAERNLTLDWYPIGTGPYMLSENNPNARMVLTRNPNFREETYPCEGEEGDRAAGLLADCGKRLPLVEQIVFTREKEQIPYWNKFLQGYYDASGISSDSFDQAVQFGQTGEVSLSDGMQAQGIRLQTSVSTSTMYMGFNMLDPVVGGMEERGRKLRQAIGIALDQEEFISIFQNGRGLPAQSPLPPGIFGYRDGRAGTNPNMYDWVNDQPQRKHIDEARKLLAEAGWPNGRDAKTGEALVVNLDTTGTGLGSKARIDWLTKQFDQLGVQLVVRSTDYNRFQEKVRKGAAQLFFWGWNADYPDPENFLFLLYGPQSKVKVQGENAANYENAEFDRLFERMKAMDNSPERQAILDRMLAILQHDAPWVWGFHPKSYGLEHSWVFNRKPSTVANNTMKYTRIDPALREAKRAEWNHPVRWPLVAGALLLLALVWPAWRHWKRSEQARAVGATA
>NZ_CP016448.1|WP_069040716.1|3170205_3171069_-|hypothetical-protein
MLPALAVALALAGCSFVQMGYNQLDRLIAWRLDDYLPMYSAQRAEVEPAVTRLVDWHCATQLPAYSAWLRTVDADMRAGLSVARANVHIDQALGFGHDIARRAAREVGPLMVGATPAQIETFNKRMKKSNRDYVEDWVEPPRDELVRERAKRMKKRSEAWLGKLTPAQLALIDDWARDVRSNGEDGMESRRRWQTALADVLARRNADRGAVISDLETLFVSPGNVFTPGYSAAFDANRARAAEALSALSASLTPTQRKHLQREAASLIADIEQIACRRSEFSLQARS
>NZ_CP016448.1|WP_069039763.1|3169582_3170209_-|LON-peptidase-substrate-binding-domain-containing-protein
MTTSLSPDAIPLFPLGVVLFPDGMLPLRIFEVRYLTMIKQCHKSGKPFGVVALTQGQDVQRPGPTPGERFHAIGTLAEIIDYQTPQPGLIEIVTRGTSRFKVTASEQTPHGLWMADIEVLPDDPHVKVPSDLAYVAANLVRMLEVFESAEVSPILEPRRFDAAGWVANRWCELLPVPAEDRQRMMEMTDPLLRLELISDLLDMTEFGR
>NZ_CP016448.1|WP_069039762.1|3168266_3169406_-|rhomboid-family-intramembrane-serine-protease
MTPTPLPLLDQLIRRRRHIPVTLTLVVLNVGVFVLMLLYGAGLWHSSSDVQFAWGANFGPATKDGEWWRLGSALFLHFGLFHLGMNMLSLWDGGRLVERMFGPARFITIYLASGLAGNLLSLISQGDRAVSGGASGAIFGVYGALLSFLWQQRDTLDRREFTRLFWGASLFAAITIFLGFQIPGIDNGAHIGGFIAGLLAGAALAQPLGEGAKPLLGRYRTHTASAGQWLAGFTLVTALVLMIIGIPSPRYRWSEEVMARGEIREFIGEDKRIADRWTQLLGDAQSSGASFDELAGRIESEVADAYQQRFDELTDLRLSPEAPSAPTLESLRRYAERRLDASRALVDGLRAHDIERVREALEQASQPPPQVAPRSGKPN
>NZ_CP016448.1|WP_069039761.1|3167062_3168256_-|DNA-polymerase-IV
MTRRWIAHLDMDAFFASVELLRYPELRGLPMVVGGGARHQPERLPDGTRRFARLRDYAGRGVATTATYEARAFGVHSGIGLMKAAALAPDTVLLPVDFDAYRHYSRLFKATVSEHAPLIEDRGIDEIYMDLTDLPGAQDAIGEDMHGGVRAIALRIQQAVLAATGLSCSIGITPNKLLSKLASDLHKPQGITLLTEADVPSVIWPLPARRINGIGPKASAKLEALGIGSIAELAAAEPLWLIEQFGQSYGRWLTAAAHGRDDRPLVTEREAKSLSRETTFERDLHARHDRAELGEIFTGLCERLAEDLQRKGYVAKSIGAKMRLDDFSILTRELTLPVYICDAPAIRHHAGLCVKRMPLDRRFRLLGVRAGHLMRADALPPPGAAPDKKEGQLALPF
>NZ_CP016448.1|WP_069040715.1|3166278_3166893_+|PEP-CTERM-sorting-domain-containing-protein
MIRNIAASAALAALAASPMTVSAAFPIEPIGPTVTVFTATPTLVGAGVSVSALGLASLTSDASGNLVGLFPITGGLLDPDLSNATVEHVGSGLRLSRGGVDVDLQNFLIDTTLAVDTIFGSVTSGATFIPLAPLFSLSGLNLVVTDPAGDALAAFLGIPDLGGAQVGFALTSPVAAVPEPETYAMLLAGLGLITLAARRRTQKG
>NZ_CP016448.1|WP_190295027.1|3165676_3166012_-|HNH-endonuclease
MTRKPDPTAHDGASKRLREDAPCPLCGRPMRAGSVVDQHHLVPKSKGGRVTVLMHRICHRKLHAVLSEDELARDYATPERLREQPDIAAFIRWIRRRPPEFDDRHRPPTRA
>NZ_CP016448.1|WP_190295026.1|3165418_3165580_-|hypothetical-protein
MPKRHRVERRHLAVIVEALLQKIAIAIPKASTKIRLLRNVSNLMRCTVRAAAD
>NZ_CP016448.1|WP_069039760.1|3163101_3165273_-|catalase/peroxidase-HPI
MNARDESAGKCPVMHGGATSADISVMEWWPKSLNLDILHQHDRKTNPMGDSFNYREQVKKLDFAALKKDVTALMTDSQDWWPADWGHYGGLMIRMAWHAAGTYRVADGRGGGGTGNQRFAPLNSWPDNGNLDKARRLLWPIKKKYGSKLSWADLILYAGTVAYESMGLKTFGFGFGRADIWHPEKDIYWGSEKEWLAPSDNPNSRYSGQRDLDNPLAAVMMGLIYVNPEGVDGQPDPLKTAHDVRITFARMAMDDEETCALTAGGHTVGKCHGNGDASLLGPAPEGAPLEEQGFGWMNHSTRGVGSNAVTSGLEGAWTTHPTQWDNGYFKLLLGYDWELKKSPAGAWQWEPVNIREEDKPVDAENPAIRRNPIMTDADMAMKVDPAYRKISERFHADPAYFSEVFARAWFKLTHRDMGAKARYIGPHVPQEDLIWQDPVPAGNTGYDVAAVKAKIAASGLSIGDMVATAWDSARTFRGSDLRGGANGARIRLAPQKDWEGNEPARLARVLGVLEPIASSAGASLADVIVLAGNVGVEQAIKAAGFGIPVPFAPGRGDATQSQTDVESFEVLEPVADGFRNWQKRDYVVTAEELLLDRAQLMGLTAPEMTVLIGGMRVLGTNHGGSMHGVFTDRVGALTNDFFVNLTDMAYMWKPAGSNLYEIRDRKTGQVKWTATRVDLVFGSNSILRACAEVYAQDDSKEKVVRDFVAAWTKVMNADRFDLA
>NZ_CP016448.1|WP_150123952.1|3161679_3162573_-|PEP-CTERM-sorting-domain-containing-protein
MVRPIAFHPFPRRQDMKVSRTLTGIALAAMASLHSGTASAVLVNNVGLEVRALIDTDAFGGNAPLVNLTESEIDLPYDRSVVNISGGTAGSFSYTADADIGNQLLKIGGSLTNSTGTDMFGFGVPLINVYAQAKDVLTLSSAVAGTYAVTLELVVHGNLETTGVSGEVSANSLLSFGPVVGLNTTDSARYTQQGAIDDTLSVTRQVTFASPGAAIDMEFEAFISFTATRVPAGFTVSGDLSNTAFLNLILPQGLSVVESGSGTFGVPIVPIPEPTINALMLAGLALVGTVARRRKGF
>NZ_CP016448.1|WP_069039765.1|3173839_3174817_+|ABC-transporter-permease
MIAYIIRRLLYAIPILIGVNLITFLLFFVVNSPDDIARMQLGAKRVTPEAIEKWKAERGYDKPLVWNADAPGVAKATDTILFDKSVRMFALDFGRADDGRDIALEIKSRMGPSLAIAIPTFILGLFVTVSFALLLVFFRNTALDVGGVVLCVAAMSISGLFYIIGGQYLVSKVWNLVPISGYSGGLDAGKFLVLPVLISVIGGIGASARWYRTLFLEEINKDYVRTARAKGLSELRVLFRHVLKNAMIPILTGVVVVIPLLFMGSLLLESFFGIPGLGSYTIDAIGSQDFAVVRSMVFIGSVLYIVGLLLTDISYTLVDPRVRLN
>NZ_CP016448.1|WP_069039766.1|3174886_3176335_+|ABC-transporter-permease
MDFKPLLLWSDILLWAMVAGCIALAVYCRRQDYLRRAWRRVGESGVAMASATILAAFVSVGLLDSLHYQPRLPAQEGSTEAQYAPEVLSVLDALVADLRLNKEKTYSAPLATHAFAKETMERDGVQTRDYPRLKWGGAHLDDVAGRDSDLARRALSGAFYGLLLWAAVVGVAVGCMALARGAAYGATCRTVWRPDTAATRPIAWRAVFATLAVLCVIGGITAAWSGGYHVFGTDKVGQDVLYLSLKSVRTALLIGTLTTLVTLPLAVALGLIAGFRGGWWDDAIQYLYTVLNSIPGVLLIAAMVLMMQVIIDTHPEWFETAAERADARLLALCFILGLTSWTGLCRLLRAETLKLRELDYVQAARAFGVGDARIMARHILPNLMHIVLIALVMDFSGLVLSEAVLSYIGIGVDSSMNSFGTMINAARLELSREPVVWWSLAAAFVLMLALVLAANLFADAVRDAFDPRFQWRARRIVKKVTA
>NZ_CP016448.1|WP_083224059.1|3176295_3178356_+|ABC-transporter-ATP-binding-protein
MARAAHREEGDSMSGPDVRQAVEPLLDVRGLIAELDTPAGIARAVDGLDFEVRAGETMALLGESGCGKSMTAGALMRLLPDVGYIAGGSVKLAGRELTTLTEAQMRESRGSDMAMIFQEPATSLNPVLTVLQQIGEVLATHRGLRGAPARARALELLDAVGIPDAARRLDEYPFQFSGGMKQRVMIAMALAGEPRLLIADEPTTALDVTIQAQVLDLLARLQRERGMAVLLITHDLGVVARMAHQIGVMYAGQLIEQAPRAAFFTRPAHPYSKLLFDALPDAARHGRGELATIPGSVPPLTTVFTGCRFADRCPLAWSRCHDEAPAWHVAGEAQRVRCHLYDPAEAARAAPMETAATPVVADGGIEAGQTPLLSVRDLKVHFPIRRGVLQRVVGQVRAVDGVSLDIRPGRTLALVGESGCGKTTVGKAILRLIEPTGGTVSLDGQDVGSLSRSALRSLRARMQMVFQDPYGSLNPRMRVGEIIGEGMGALQQRGDGVAVTRLLEQVGLRADMADRYPHEFSGGQRQRIAIARSLAVQPALIVCDEPTSALDVSVQAQILNLLGRLQRDMGLAYLFITHNIAVVEHLAHEVAVMYLGRIVEIGSVDQVLGAPRHPYTKALLSAVPRADLDAATLPQKLTGDLPSPADPPSGCHFHPRCPRAQARCQTDAPVLESRDGRQAVACWFAD
>NZ_CP016448.1|WP_069039767.1|3178660_3180163_-|transglycosylase-SLT-domain-containing-protein
MPLLIDSLLRRAALLLSGLLLAGCAATSVVSENSGDAPVARSSVSTPDRSRVTKKPGDTSRTPGIKPGKAEPIPFPEPTEIVRAPEDEIKPVDLTLPPDDLWERIRKGFGMADLDHPLVAEHQAWYLNRPDYFRRMSERGRRYMFHIVEEIEKRGLPTELALLPMVESAYNPEALSVAKASGLWQFIPSTGKLYGLEQNAQRDDRRDIVASTQAALEYLQKIYEMHGDWHLALASYNWGEGAVGRAVLRNQAAGLPTDYASLNMPAETRHYVPKLQALKNIIAQPELFGIELESVENKPYFAQVAEAPSMDLATAARLADVPLAEIKALNPQHKRPVIRTGKGGAQLVLPAHAVDTFMANLDNRNPSAAPTAGAPWRTYTLGPKETLATVIRRFGVSEWRLRRFNGLSPTVRIGPGSTLLVPDENSSLSLDGGSAEEAPRLGVDKPKYKRVKRNGRWVNVPVTPATGSKAVKPAVQKKKVSTPPARKTTVIPAGKSTTGK
>NZ_CP016448.1|WP_069040718.1|3180360_3181317_+|diguanylate-cyclase
MKALIIEDSQTGLAVISQHLERMGILPIAATDGEAGIAAFREHNPDIVLLDVVLPGIDGYEVARRIRAIEQSGEWTPILFLTARTADTDLVQGITAGGDDYLFKPVSEVVLAAKVRAMQRILQMRYSLVVLTRKLDAANQELTRLSSLDGLTGLANRRQLDETIMREWRRAARYKRPIALALVDVDNFKQYNDTYGHIAGDECLKSVANALLAVSRRPSDLVARYGGEEFALVLPETDLSGARRVGEGLCDSIRALGIEHRAVPGGKLTISVGVASTTPGQESGGPQSLLAEADFALYSAKAGGRDRVGYKVPEVAVE
>NZ_CP016448.1|WP_069039768.1|3181337_3182099_-|hydroxyacylglutathione-hydrolase
MKIYPIPAFGDNYLWLVANGTRALAVDPGDANPVLAALERHRLTLDTILITHHHDDHIGGVAELVRRSGARVYGPADARIADVTDPVTEGRRLDLPWLGTALSVLEVPGHTRSHIAWYGGDALFCGDTLFAAGCGRLFEGTAEQMWHSLSRIASLPLHTRIYCAHEYTESNLRFALAVEPDNQALIARARRVAKLRAADQPSVPFALAEELATNPFLRVREAAVIRAAEAHAGRRLNSPVEVFAILREWKNAF
>NZ_CP016448.1|WP_069039769.1|3182176_3182923_+|class-I-SAM-dependent-methyltransferase
MSIPGLHEWLDTPQGQYVQRWEHAQVDEMVADVFGYNAVQIGLLQHDYLRANRMPFKLYSDDARPGPLPALVCDPVHLPFPATSIDLVVLPHVLEFAADPHAVLREVERVLVPEGQVLVTGFNPFSLWGARRRLQERDPFPWNGDWLSVPRLRDWFKLLNLDTQAGCFGCYRPPVRSEKWLARWSFIESAGDRWWPFLGGAYVLQGVKRVHGMRLITPQWSDRRAAARAVASVGSARRNTVPDRKFGT
>NZ_CP016448.1|WP_069039770.1|3182937_3183375_+|ribonuclease-HI
MDDVIIYTDGACSGNPGPGGWGALLKCGGVERELSGGERATTNNRMELMAVIEALNALKKPVRAVVYTDSQYVQKGISEWIHGWKRKGWRTAGGDPVKNVDLWQALDAAARVHEVEWKWVKGHAGHPENERVDRLARDAIPARGA
>NZ_CP016448.1|WP_069039771.1|3183439_3184159_+|DNA-polymerase-III-subunit-epsilon
MKRQIILDTETTGLEWQNGDRLIEIGCVEMVGRKRTGRQFHRFVNPEREVPEGAVAIHGITTEFLADKPKFRDVAAEFVDFVRDAELVIHNAAFDVGFIDNELNLIGLPLLRTITSGPPIDTVRMARDMFPGKRANLDALCERFGIDNTHREFHGALRDAELLVEVYLAMTRGQESLIIDLEPDAATVRSAAPTRVSGALRRVQASEAERSEHERVLAEIDKASGGATVWRAIEPVTPA
>NZ_CP016448.1|WP_069039772.1|3184293_3185328_+|isocitrate-dehydrogenase
MSAQKIPATLIPGDGIGPEIMDAALAALDAVGAPFEWDTQPAGMGALKTHGDPLPEATLESIRRTRLGLKGPLETPVGGGFRSINVRLREAFKLYANIRPARTLIPGGRYDNIDLIVCRENLEGLYMGYEHFIPIEGDPHAVAMSTGVNTRQGARHILEYAFEHAIALGRKKVTVVHKANIMKALTGIFLETAEQMYEERYKGRIQFEQVIVDACCMKLVMNPWQFDVLVTTNLFGDILSDLTAGLVGGLGMAPGSNIGADAAIFEAVHGSAPDITGKGIANPTALVLASALMLDHVKLQDMGDRIRKAVSDTLNIDNVRTGDLGGKATTKQYTDALVARIRNS

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Crispr_ID: NZ_CP016448_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_10

3214656-3214776

Orphan

Consensus_repeat	Method
GGGGGCAAGTCGTCTTGGGGCGGCCCGGCGACGACTTGTCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016448_10

>merge|NZ_CP016448|10|3214656-3214776|CRISPRCasFinder
GGGGGCAAGTCGTCTTGGGGCGGCCCGGCGACGACTTGTCTGCCCCCCGGGCCGGCCTGCGTCCGTCCCGCCCCCCGAGGGGGCAAGTCGTCTTGGGGCGGCCCGGCGACGACTTGACTGC

>NZ_CP016448|10|10|3214656-3214776|CRISPRCasFinder
GGGGGCAAGTCGTCTTGGGGCGGCCCGGCGACGACTTGTCTGC	CCCCCGGGCCGGCCTGCGTCCGTCCCGCCCCCCGA
GGGGGCAAGTCGTCTTGGGGCGGCCCGGCGACGACTTGACTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069039806.1\|3216671_3219479_+\|bifunctional-glycoside-hydrolase-114/-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200548
NZ_CP016448.1\|WP_069039812.1\|3227658_3229029_+\|exopolysaccharide-Pel-transporter-PelG	unknown	unknown	gnl\|CDD\|379904
NZ_CP016448.1\|WP_069039798.1\|3208491_3209148_+\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|379408
NZ_CP016448.1\|WP_069039794.1\|3205668_3206907_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP016448.1\|WP_069039805.1\|3215721_3216453_+\|proteasome-type-protease	unknown	unknown	gnl\|CDD\|239734
NZ_CP016448.1\|WP_069039797.1\|3207797_3208502_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP016448.1\|WP_069039810.1\|3225095_3226097_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016448.1\|WP_069039808.1\|3223186_3223714_+\|penicillin-binding-protein-activator-LpoB	unknown	unknown	gnl\|CDD\|227903
NZ_CP016448.1\|WP_069039809.1\|3223714_3225106_+\|PelD-GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379908
NZ_CP016448.1\|WP_083224061.1\|3229045_3229957_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP016448.1\|WP_069039795.1\|3206939_3207254_+\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|377724
NZ_CP016448.1\|WP_069039800.1\|3209861_3210788_+\|CobD/CbiB-family-protein	unknown	unknown	gnl\|CDD\|236068
NZ_CP016448.1\|WP_069039803.1\|3213664_3214615_+\|alpha-E-domain-containing-protein	unknown	unknown	gnl\|CDD\|377234
NZ_CP016448.1\|WP_069039804.1\|3214796_3215609_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP016448.1\|WP_069039802.1\|3212241_3213663_+\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|225190
NZ_CP016448.1\|WP_069039799.1\|3209147_3209762_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NZ_CP016448.1\|WP_069039807.1\|3219441_3223155_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372601
NZ_CP016448.1\|WP_069039811.1\|3226093_3227659_+\|GT4-family-glycosyltransferase-PelF	unknown	unknown	gnl\|CDD\|340841
NZ_CP016448.1\|WP_069039796.1\|3207278_3207764_+\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|213038
NZ_CP016448.1\|WP_069039801.1\|3210831_3212019_+\|beta-ketothiolase-BktB	unknown	unknown	gnl\|CDD\|181625

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069039806.1\|3216671_3219479_+\|bifunctional-glycoside-hydrolase-114/-polysaccharide-deacetylase-family-protein	gnl\|CDD\|200548	cd10922, CE4_PelA_like_C, C-terminal Putative NodB-like catalytic domain of PelA-like uncharacterized hypothetical proteins found in bacteria. This family is represented by a protein PelA of unknown function that is encoded by a gene in the pelA-G gene cluster for pellicle production and biofilm formation in Pseudomonas aeruginosa. PelA and most of the family members contain a domain of unknown function, DUF297, in the N-terminus and a C-terminal domain that shows high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	2.30803e-105
NZ_CP016448.1\|WP_069039812.1\|3227658_3229029_+\|exopolysaccharide-Pel-transporter-PelG	gnl\|CDD\|379904	pfam16933, PelG, Putative exopolysaccharide Exporter (EPS-E). PelG is a family of putative exopolysaccharide transporters like PelG. Most members carry twelve transmembrane regions. The family also contains fusion proteins with glycosyl transferase group 1, which are putative flippase transporters.	3.26381e-162
NZ_CP016448.1\|WP_069039798.1\|3208491_3209148_+\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|379408	pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl protease. This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins.	1.15278e-29
NZ_CP016448.1\|WP_069039794.1\|3205668_3206907_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP016448.1\|WP_069039805.1\|3215721_3216453_+\|proteasome-type-protease	gnl\|CDD\|239734	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.	4.75233e-150
NZ_CP016448.1\|WP_069039797.1\|3207797_3208502_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	2.21526e-54
NZ_CP016448.1\|WP_069039808.1\|3223186_3223714_+\|penicillin-binding-protein-activator-LpoB	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	3.43931e-06
NZ_CP016448.1\|WP_069039809.1\|3223714_3225106_+\|PelD-GGDEF-domain-containing-protein	gnl\|CDD\|379908	pfam16963, PelD_GGDEF, PelD GGDEF domain. This degenerate GGDEF domain is found at the C-terminus of PelD, a membrane-bound c-di-GMP-specific receptor. It contains an RXXD motif resembling the allosteric inhibition site found in diguanylate cyclases. In PelD this RXXD motif binds to dimeric c-di-GMP.	2.63475e-26
NZ_CP016448.1\|WP_083224061.1\|3229045_3229957_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	2.7922e-21
NZ_CP016448.1\|WP_069039795.1\|3206939_3207254_+\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|377724	pfam06865, DUF1255, Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.	2.67505e-55
NZ_CP016448.1\|WP_069039800.1\|3209861_3210788_+\|CobD/CbiB-family-protein	gnl\|CDD\|236068	PRK07630, PRK07630, CobD/CbiB family protein; Provisional.	1.88902e-135
NZ_CP016448.1\|WP_069039803.1\|3213664_3214615_+\|alpha-E-domain-containing-protein	gnl\|CDD\|377234	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif. An uncharacterized alpha helical domain containing a highly conserved ER motif and typically found as a tandem duplication. Contextual analysis suggests that it functions in a distinct peptide synthesis/modification system comprising of a transglutaminase, a peptidase of the NTN-hydrolase superfamily, an active and inactive circularly permuted ATP-grasp domains and a transglutaminase fused N-terminal to a circularly permuted COOH-NH2 ligase domain.	5.25544e-125
NZ_CP016448.1\|WP_069039804.1\|3214796_3215609_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.48307e-22
NZ_CP016448.1\|WP_069039802.1\|3212241_3213663_+\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|225190	COG2308, COG2308, Uncharacterized conserved protein [Function unknown].	0
NZ_CP016448.1\|WP_069039799.1\|3209147_3209762_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	3.83497e-70
NZ_CP016448.1\|WP_069039807.1\|3219441_3223155_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|372601	pfam13429, TPR_15, Tetratricopeptide repeat.	1.06415e-47
NZ_CP016448.1\|WP_069039811.1\|3226093_3227659_+\|GT4-family-glycosyltransferase-PelF	gnl\|CDD\|340841	cd03813, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.	0
NZ_CP016448.1\|WP_069039796.1\|3207278_3207764_+\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|213038	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ. In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.	1.8044e-86
NZ_CP016448.1\|WP_069039801.1\|3210831_3212019_+\|beta-ketothiolase-BktB	gnl\|CDD\|181625	PRK09051, PRK09051, beta-ketothiolase BktB.	0

>NZ_CP016448.1|WP_069039803.1|3213664_3214615_+|alpha-E-domain-containing-protein
MLSRTADHLYWMARYIERAENVARMLDVNYRMSMVPQAEGGIDAGWGATLSITGLEDAFRAKHSAATMESVLEFMVFDGTNSSSIMSCLRMARENAHAVRGTITSEMWETTNDTWLKMRDYPRWKLAGSEIGEFFEWVKFRSHLSRGVTLGTMLRDEAFHFIRLGTFLERADATARFIDVKYHMLVDGAAPPDTAADYYQWSALLRSVSAFEVYRKVYRDLITPVKVAELLILNDQMPRSLRTSMVEVFENLNALSNYRSSETERRAGELQASLKFGRIEDVFARGLHEYLTQFIVRVIDLGNRVSEDFLVPMSSN
>NZ_CP016448.1|WP_069039802.1|3212241_3213663_+|circularly-permuted-type-2-ATP-grasp-protein
MANPSSIYDEMNSADGTVRSHYAGYKKWLAETPPERIAQKRAEADLVFHRVGITFAVYGEESGKERLIPFDIVPRIIPAQEWKQLAAGLRQRVKALNMFLNDVYHDQEIIKAGHVPAEQILSNSQYRPEMQGVDVPGGIYAHIAGVDVVRAGAGEFYVLEDNLRVPSGVSYMLEDRRMMMRLFPELFSRYRVAPVEHYPDMLLTNLRAVAPAGVIDPTVVVLTPGAYNSAYFEHAFLAQQMGVELVEGQDLFVRDEHLYMRTTQGPQRVDVIYRRIDDDFLDPLAFRPDSMLGVPGLLQVYRDGHVTLANAIGTGVADDKSIYPYVPDMIRFYLGEEPLLNNVPTFMCRKPDDLAYVLSHLGELVVKETHGAGGYGMLIGPLATKEEIERFRQLIIDTPDRYIAQPTLALSACPTFVDAGIAPRHIDLRPFVLSGKDINMVPGGLTRVALREGSLVVNSSQGGGTKDTWILEI
>NZ_CP016448.1|WP_069039801.1|3210831_3212019_+|beta-ketothiolase-BktB
MADKREVVIVGAARTPIGAYGGSLKDFTACDLGAHVVKAAFARAGVDAKEAQHLVFGNVIHTEARDMYVSRVVALNAGMAQESCAMGVNRLCGSGFQAIVSAANAIQLGDAECAVGGGVETMSRGGYLMPAARWGARMNDTKMIDMMVGALTDPFETTHMGITAENIASQFGFGREEQDAFAVESHRRAAAATDAGHFKSQIAPLEVQTKKGTTVIDTDEHFRRDATVEGMAKLRPVFKKDGSVTAGNASGINDGAAAIVMMEAGAAARAGAKPLARLVSYAVAGVAPSIMGTGPIPAVKLALARAGLKASDLDVIESNEAFAVQAMCVTRELGLDPAKVNVNGGAVGLGHPVGATGAVLTVKCLYELQRTGGRYGLITMCIGGGQGIAGIIERI
>NZ_CP016448.1|WP_069039800.1|3209861_3210788_+|CobD/CbiB-family-protein
MTWLSLFVALLIEQFKPLSYERVVAGPLARYAFWFEQRLNAGEARHGVIAWVLAVGLPVFAVWCLYLVLVWINPLLGWALNVLVLYATMGFRQFSHHFEAIADALRADDPDTARRELSDWLQRNTDRLKTEEIARLSIEQGILAAHRHVLAPLALFALLPGPTGPLLYRLTERLSWSWARRENIEFGAFGRFARRMYEWLDWVPVRMTAATFAIVGDFEDAVHCWRTQAAKWPEQAAGILLASGAGALGVKLGAPLFELGEVADRPELGMGNDADVDLMQSAIGLVWRTLVFCLILLGLLTLAGYIGN
>NZ_CP016448.1|WP_069039799.1|3209147_3209762_+|CoA-pyrophosphatase
MDTPLLLSAGFDPHGLRSRLGALQPRPIDERFAGFTPAAVLVPVVIGGAEPTLLLTRRSAHLYDHPGQIAFPGGRVDPGDVSPEATALREAQEEIGLAAEQVELLGRLPDYFITASGFRVTPVVGLLRTPLALRLDPFEVAEAFETPLSFLLDPSNRKRGRIEHAGVMREYWAMPWQGYDIWGATAGMIVSFAEHLLVDQPLRR
>NZ_CP016448.1|WP_069039798.1|3208491_3209148_+|TIGR02281-family-clan-AA-aspartic-protease
MGFINRPPAYILAMLLSLAGGSAHAADLSLAGVFGGKAVLVIDGGAPRTLAVGARSPEGIRLLSVDRDSAWVEVEGRRVQLRIGENVASSRSSDAGAAAIHLNADSQGHFLSDGAINGTPVRFLLDTGATVIALGRSDALRANIRTASAPAMAVQTANGVVRAWRVKLVSVKLGGVTLSNVDAAVMETDMPHVLLGMSFLNRMDMQRTGQIMTLRQRF
>NZ_CP016448.1|WP_069039797.1|3207797_3208502_-|type-1-glutamine-amidotransferase
MKPIAVFRHSLTEGPGYIATYMKGIGRDIKVVAIDRGDVVPHDPTAFAGLCFMGGPMSVNDPLPWIPEVLALIRRAMDADIPVIGHCLGGQLMSKALGGAVDANPVKEIGWRHVTLNGAAAREWFGEREGFLSFHWHGETFSLPDGATHLLASDACPNQAWAIGKHLAMQCHIEMTEAMIREWCVGGQKEIRAASAQPTVQSAEGMQQDIEARVAALHAVAETAYAKWSEGLKD
>NZ_CP016448.1|WP_069039796.1|3207278_3207764_+|YajQ-family-cyclic-di-GMP-binding-protein
MPSFDISSEIDMVELRNAVDQANKEIANRFDFKGSDARVEQGDKLLTLFADDDFKLDQVYDVLLTKFAKRNIDVRSIERGDAQKISGNKSKQELKLKVGIESESAKKIVRILKDSKLKVQGSIQGEEVRVTGAKRDVLQDAIALLRKQVTDIPLQFGNFRD
>NZ_CP016448.1|WP_069039795.1|3206939_3207254_+|pyrimidine/purine-nucleoside-phosphorylase
MSQFDNVNVVKKANVYFDGKCVSHSIQFADGTKKSVGVILPATLTFNTGAPEIMEGVAGSCRVRLKGETEWKTYGAGESYDVPGNSSFDIEVAGEPYHYVCHFG
>NZ_CP016448.1|WP_069039794.1|3205668_3206907_+|argininosuccinate-synthase
MSSGDIKKVVLAYSGGLDTSVILKWLQDVYQCEIVTFTADLGQGEELEPARAKAIKLGIKPENIYIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRLIDIARETDATAISHGATGKGNDQVRFELGAYALMPNVKVIAPWREWDLLSREKLLAYAETHGIPIEMKHKQGGSPYSMDANLLHISYEGRHLEDPSAEAEESMWRWTVSPEAAPDAAEYLDLEFERGDLVSINGTRMQAHELLATLNQIGGKHGIGRLDLVENRYVGMKSRGCYETPGGTILLRAHRAIESITLDREVAHLKDDLMPRYASIIYTGYWWSPERRALQALIDHTQQSVNGWVRLKLYKGNVIVVARDSKTDSLFDPTIATFEDDAGAYDQKDAAGFIKLNALRMRIAANAAIKRGK
>NZ_CP016448.1|WP_069039804.1|3214796_3215609_+|transglutaminase-family-protein
MLLDIRHETTLRYMRPVQYSIQQLRLTPREDSTQRALAWKVQVPGNARRSIDAHGNVGHLLTLDRPHSELSILVSGTVRMTEDAAWMPRDAGTLSPLSYLATSRLTESDEQAHAMAATHLRARRDTVGELLDLSGAVCGAVRHQPECVPPAGAASAFEAGRGCGADIAHAFIACCRAAGLPARFVSGYLVDAAGEWAAPHTWVDVWLASGPAAGGEAGWVSVDVLERSLAGQGYCRLAVGRDHLDACPVRLSDTADHAVMTVTRVSVHRH
>NZ_CP016448.1|WP_069039805.1|3215721_3216453_+|proteasome-type-protease
MTYCVGMLLDAGLVCLSDSRTNAGVDHINTFRKMNVFERTGERVLVLMSAGNLAVTQTLVSLLRERLATDGPNLHTVANLFEAARHVGDCLREVYARDADALQEFGIEFNASFILGGQILGEVPRLFQIYSAGNFIEATRDTPYFQIGEAKYGKPIIDRVIRPETLLDDAAKCALISMDSTIRSNLSVGLPLDLLVLRRDGLKVCSSLRIDADNAYFEMIRSRWGESLREAFHALPSPDWIPG
>NZ_CP016448.1|WP_069039806.1|3216671_3219479_+|bifunctional-glycoside-hydrolase-114/-polysaccharide-deacetylase-family-protein
MPRGLRGVLYLLLCLVAASCACVTAARAADLPSIALHYGKQALLASLKAFDIAVVEPDHGFDPVAYRAGKAEGAGSELFAYVSVGEVHPSRGYASRIPAAWRIGSNTDWQSIVIDQAQPDWPAFFAEQVIAPLWTRGYRGFFLDTLDSYHLVKNADVAAQQAGLVAVIRLMRTRFPGIRLIMNRGFELLPALRGEVFAVAAESLYRGWDAKKKRYVEVSQADRDWLLGQLAAARDQYGATVLAIDYVAPTDRALARATAQRILSHGIVPYVTDAALETTGVGLIEVLPRKVMFLYNSRESSRINASNAHRYAEMPVNHLGYVAEYVDVNGSLPEVVSAGDYAGVVAWFDGYVAPDRTGALSNWLAARIADGTRVAVFGSFGFQPAGSFVRAAGLDDAAPPKGALKVVSADALIGYESPALPERRGVEAIRVSAPGARTLLRLSDANGTHYDAAALTGWGGYVMNPFVVRVLPGEDEQSRWIVEPFAFIRQALALPALPVADTTTAAGRRMFFAHIDGDGFPSRAEMPGRRLAAEVLLDDVLKRYAVPHAMSVIEVETSPQGAYPKESPLMEDVARRMFALPHVEIASHSYTHPFFWDSVERGEVRESLQGYSLAPKGYVPSLQREILGSSEYIRSRLAPPGKPVGLMLWTGDASPTEAALDIVDAAGMVQMNGGYTVATRNYASLAAVSALGSWQGRRFHVHAPIMNENVYTNLWTGPFYGFERVIETFDYTGAPRRLKPINIYYHTYSASKRAALDALHKVYRHALAQEIHPVFPSEYVRIAMNFNDLVLARSLDGRRYLVRNAPHLRTLRLPAELGYPDLAPASGVAGFNAGPEGRYLHLAADQASFGLQPTAPAGPALSSSNGRIAAMTRDGDRMLLDLRAHVPLEFVLANIDRCTASADGKPLTPFRRDGSLTHFRLTAHAATIELRCRLA
>NZ_CP016448.1|WP_069039807.1|3219441_3223155_+|tetratricopeptide-repeat-protein
MLRRSSYAAASLERPRLVAPHVLLGIALLVALLLVVLYPYRELVQYTLNATRGDTLTIAYLRNLLRTDPDNPELRLALVRQALARRDYDGARLALAPLLSGTPAGASGTEARWVEWTVFESELLASLPGSARRAELEAALPEKLRRTVLIDGLTDQNRMALVERALSWGQAVLALELLSGFTREGVRPDPRIYREAAKELLGHGEYQSAAKILLLLRAAEPDAATRRQLYLQAIRILQSGNLLALALDTAERELGELSGDTEVLYYLVTLARAANRPDAAARFARAMLKLSLQLQWRRTLLAQSGFDARPWRVATNGVPDLPFDDRIYTLGFEAFLGNRQLDDAQRVAASAVRQAPDSLVWRERLATSSEWAGKPQEGLEQWLVIARRTGREDAWDAVLRLAPGLLDDEALLAGLRHRIARQPGDSRLLSAIIATYERLGRPREGIEFLQGVGGATPPLPVLVALADLAERAADIDLALATLARIDGTATPDVRRTSRRAALLISRNRFDEAMAALEAVRPAATDADRDYWRLYSSLAQLLQDDDRARDALARITRFDDAEVSELQDLVELLLDVAPLQAAREAERGWRHYGDRVWLMRTLDLYVFTGRPQDIGRIIGELSDAQRRDAEQLPLFLQIRARWHQAAGRKAQALNDFSAALAIDPGSVEVRSALLWLFIDGNDTLALRELLARHEQAWAREPLLHDALAASWQALSRPQTALERYLLPRIGAQRGDFLWMMNVADALEQNQETERAWRLREQLWRAERPKLRVLAADDIAQLQRLARVRLARAQQPGDASHALLREVLRLDRAPDGEWLPAAKELALSWFIDHGEYEAVRGFLWHQYGRALNRPLWADITAALGQGDVAAVGALLEQWDERLPRYDRVNSARLVGDVRRAQTAAFETMDAQRDDAPLHLQLSDALLDYADRFDLDIAQRELAGIDERQQSATLDIGVAPDLRFSVEFGSITRGRGDNVDYSAVPDEREYLLGRVAWAHDDGVTRLTIGQRDGFETIHPFAIEREQRIDRRLSGSLGIGLNMPATENLGLRVAGMRDQVELRGTYRVSRYDRVGLQLSRYRYQAQNDLDIGRGRLWQAEYVHSIRTELPDLEVSAYVAGYRFNPSDIDLADARAVDIKNRLFFASASDATALRPQSFNLHGVRLTHNVRLVRDYTKALRPFGSVGVLNNSVSGAGYDVALGLAGSVLGTDHFSLSWRQNKGGGGLFARTTEFALHYRLFF
>NZ_CP016448.1|WP_069039808.1|3223186_3223714_+|penicillin-binding-protein-activator-LpoB
MTRLIHRTLGLLAVVTLLGGCAVIDHSPPSGADKNAAWVVLPFANATETPFAGQRAESVTEGLLRSLGVANLKRYPVSLQNDNLFESGKPKDADKAMDWAKEQGARYAVTGTVDEWRYKVGVDGEPAVGVALQIVEIDGGKVVWSGVGGKSGWSRESLSGVAQELIKSLLVPALK
>NZ_CP016448.1|WP_069039809.1|3223714_3225106_+|PelD-GGDEF-domain-containing-protein
MNPRAPGEKPVIRRVDEPLVRRIIDRFTPTGSGAGASALTETLVLPVLALALAFWLNPLDPFFLRSQFAWVWLGPVLVALRYGPIPGLVGSAIVFGAWFVFGELGVALGELPKLYFLGWLITVMISGEFSSLWRGRVRRAESVQAYLEQRLEYLTHQHYLLRLSHDRLEQDLISRPVSMRDALVSLRGLASTPAAAGTSLPGAAELLRLVSQYCQIERAALLQVDQNGHADGAAPVHLGAQFDIDLADPLVGYACERRRLAHIALDEERALSGSRYLVVAPLTDMNGDMRALLVVEGMPFFALHDETLQMLNLLLGYYADGLSASELAAPIRAAYPDCPLDFAFELARMWRVRVESGVASALVTLDFPAAAPEDDLALQISRIQRSLDVVWLVRSDTGSQLITLMPLAGSAAVEGYLARIDAWLALHRSGGLDASGVGSRINPIDTVEPLTLLERLLKGRHGR
>NZ_CP016448.1|WP_069039810.1|3225095_3226097_+|hypothetical-protein
MGASKFGLMALLTELGALQALLLVEHADQALLAYLAIHAPASGLLALAVYTLIPARQSKPRSSVLALLFSCIFFVPLLGFVGVIIGALLRHLLPRLRAPQRFTAVRLPDLDTHESSEKSSAGFRQAGVRQFLKNERAPVPQRLRAMVALSHAPSRIGSPVLRELLGDAEDDLRLLAYGLLDGREKHLNASIHDARQRLAASRDVAVRSTVAHQLAALYWELIYQGLVQGDLLDYAVGEALRHTETALQGLTDDPALHLQHGRLLQQLQRFDEADAAYRRARELGLPASRVVPYLAELAFARRDYVRVKTLLASMQDWEGLSRLQPVLRFWGHA
>NZ_CP016448.1|WP_069039811.1|3226093_3227659_+|GT4-family-glycosyltransferase-PelF
MTDLTKPAGVDVALLLEGTFPYVSGGVSSWVNQIIRAFPDLTFAVVFIGSRRSDYGDMRYTLPDNVKHIETHYLHDDLGSASAHDRKTGMAGDAEGFARMAALHDTFRSGGDALDLFGSACREISPGGRVSLDDFLRSEASWDIVTDRYRKYCSDPSFVDYFWTVRIMHQPLWQLARVAHGLIPAKVYHSVSTGYAGFLGAMLAQSTGRPLVLSEHGIYTKERKIDLYQNEWIRDNRNVFQKDASELSYFRQLWIRFFEWLGRLTYGAADPIIALYEINRLRQVADGADAARTRNIPNGVAIQKLAPLRDKRPDSVPPVLCLIGRVVPIKDIKTFIRAMRRVVNRMPEAQGWIAGPAEEDPAYAEECRNLVDSLGLNDNVRFLGMQKIDELMPKIGLVVLSSISEALPLVLLEGYAAGVPAVSTDVGSCRQLMYGLGDEDEALGAAGRVVGIADPQALADAALELLGDPVAWTSAQQAGIARVERYYSDTQMFGRYREVYTQALAREGRAAGGCPFGHGAR
>NZ_CP016448.1|WP_069039812.1|3227658_3229029_+|exopolysaccharide-Pel-transporter-PelG
MAGIGFELRKLLKKDSLLGLAQAYSYAGVIGSGPWVLSIVGILMVGLLSRAVVVPEFLVTQFQVSVTYLIATSLILTGVVQLAFTRFVSDRLFEKRDDIIMSNFNGLLLWVIALSGIIGLALAFTLFSGLSVAYRLLMLSGFVLLCGIWVATIFLSGLKMYRAILLLYALGYAITVTAALLARPWGLEGLLGGFVLGHFVLLVGMWIMTSWHYRSVLTISYEFADRSTRYPTLMAIGLLYNLGVWADKFMFWSWPETSDAIIGPLRASVIYDLPVFMAYLSIIPGMAVFLVRIETDFVEYYDRFFDAVRAGGSLEYIEDMRDEMVYSIRQGLAEIGKIQTLAMLVAIVAGPAVFALLEISELYLPLLYIQTLAASLQVGLLALLNVFFYLDQRRLILGLCAFFCVSNIVFTALFFKLGASFYGYGYALSVLLTLLFGLYALDRKLGRLEYETFMLQ
>NZ_CP016448.1|WP_083224061.1|3229045_3229957_-|transglutaminase-family-protein
MPRMNVTVSLRYDVDTAGSLALRILPAATPQQKVSGESLVSSLGARSRIVNGRLGQRVLHVQAPPGPLEIDYSARVLTTHHAADPATLAEIGVAELPFDVLPFLHESPFCPTEPLTRLAFRTFGRMKPGYARVATLCECVRDRTCFDPAQAGADKSVMDTLLDKSGASEHFAHLAIALCRALYVPARLVSVSGPGSSAGQGLSGLHCCIEVFLGDRWYLFDPTGTAPIGRLIRIGTGRDAGDLPAISLQGEAQQTGGRLQITTLCDASDLQSEAMDAQQAISTAAPDLTRGGSLIEQDGRRQA

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Crispr_ID: NZ_CP016448_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016448_11

3846575-3846724

Orphan

Consensus_repeat	Method
AGGTTGGGGTGAGCGCAGCGATGCCCAACAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP016448_11

>merge|NZ_CP016448|11|3846575-3846724|CRISPRCasFinder
CGGTAGGGCCGCGCGCGGCGATGCCCGATACCCGCCTGGCACGTGTCGGAACCCACTGTAGGTTGGGGTGAGCGCAGCGATGCCCAACACTCACCTCTCCGACCTTCGCACCCACACGCAGGTTGGGGTGAGCGCAGCGATGCCCAACAC

>NZ_CP016448|11|11|3846575-3846724|CRISPRCasFinder
CGGTAGGGCCGCGCGCGGCGATGCCCGATAC	CCGCCTGGCACGTGTCGGAACCCACTGT
AGGTTGGGGTGAGCGCAGCGATGCCCAACAC	TCACCTCTCCGACCTTCGCACCCACACGC
AGGTTGGGGTGAGCGCAGCGATGCCCAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016448.1\|WP_069040270.1\|3849096_3850185_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378934
NZ_CP016448.1\|WP_069040786.1\|3847568_3848276_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213227
NZ_CP016448.1\|WP_069040273.1\|3853212_3853590_+\|DUF779-domain-containing-protein	unknown	unknown	gnl\|CDD\|377532
NZ_CP016448.1\|WP_069040269.1\|3848268_3848973_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|227008
NZ_CP016448.1\|WP_069040271.1\|3850198_3851389_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
NZ_CP016448.1\|WP_083224093.1\|3844289_3844745_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP016448.1\|WP_069040266.1\|3844856_3845606_-\|2OG-Fe-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|370779
NZ_CP016448.1\|WP_069040274.1\|3853622_3854849_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NZ_CP016448.1\|WP_069040258.1\|3836717_3837959_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP016448.1\|WP_069040275.1\|3855316_3856399_+\|ligase-associated-DNA-damage-response-exonuclease	unknown	unknown	gnl\|CDD\|274995
NZ_CP016448.1\|WP_083224092.1\|3841331_3842948_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NZ_CP016448.1\|WP_069040267.1\|3845715_3846516_+\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|163190
NZ_CP016448.1\|WP_069040264.1\|3843731_3844094_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NZ_CP016448.1\|WP_069040259.1\|3838180_3840997_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NZ_CP016448.1\|WP_069040268.1\|3846747_3847578_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225544
NZ_CP016448.1\|WP_069040272.1\|3851510_3853025_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP016448.1\|WP_069040262.1\|3842947_3843454_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NZ_CP016448.1\|WP_069040263.1\|3843450_3843720_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NZ_CP016448.1\|WP_069040787.1\|3854845_3855292_-\|MEKHLA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378025
NZ_CP016448.1\|WP_069040260.1\|3840993_3841335_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377

Protein	Function_ID	Function_description	E-value
NZ_CP016448.1\|WP_069040270.1\|3849096_3850185_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378934	pfam12727, PBP_like, PBP superfamily domain. This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.	5.88555e-46
NZ_CP016448.1\|WP_069040786.1\|3847568_3848276_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213227	cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system. Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).	1.16834e-65
NZ_CP016448.1\|WP_069040273.1\|3853212_3853590_+\|DUF779-domain-containing-protein	gnl\|CDD\|377532	pfam05610, DUF779, Protein of unknown function (DUF779). This family consists of several bacterial proteins of unknown function.	3.47022e-67
NZ_CP016448.1\|WP_069040269.1\|3848268_3848973_-\|ABC-transporter-permease	gnl\|CDD\|227008	COG4662, TupA, ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism].	2.4449e-58
NZ_CP016448.1\|WP_069040271.1\|3850198_3851389_-\|transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	2.19771e-12
NZ_CP016448.1\|WP_083224093.1\|3844289_3844745_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.68375e-27
NZ_CP016448.1\|WP_069040266.1\|3844856_3845606_-\|2OG-Fe-dioxygenase-family-protein	gnl\|CDD\|370779	pfam10014, 2OG-Fe_Oxy_2, 2OG-Fe dioxygenase. This family contains 2-oxoglutarate (2OG) and Fe-dependent dioxygenases. It includes L-isoleucine dioxygenase (IDO).	2.13433e-85
NZ_CP016448.1\|WP_069040274.1\|3853622_3854849_-\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP016448.1\|WP_069040258.1\|3836717_3837959_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.17247e-18
NZ_CP016448.1\|WP_069040275.1\|3855316_3856399_+\|ligase-associated-DNA-damage-response-exonuclease	gnl\|CDD\|274995	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated. Members of this protein family frequently are found annotated as a putative exonuclease involved in mRNA processing. This protein is found, exclusively in bacteria, associated with three other proteins: an ATP-dependent DNA ligase, a helicase, and putative phosphoesterase.	0
NZ_CP016448.1\|WP_083224092.1\|3841331_3842948_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP016448.1\|WP_069040267.1\|3845715_3846516_+\|hydroxypyruvate-isomerase	gnl\|CDD\|163190	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.	5.08642e-146
NZ_CP016448.1\|WP_069040264.1\|3843731_3844094_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	6.42156e-30
NZ_CP016448.1\|WP_069040259.1\|3838180_3840997_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP016448.1\|WP_069040268.1\|3846747_3847578_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|225544	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism].	1.68337e-106
NZ_CP016448.1\|WP_069040272.1\|3851510_3853025_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP016448.1\|WP_069040262.1\|3842947_3843454_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	1.47164e-56
NZ_CP016448.1\|WP_069040263.1\|3843450_3843720_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	3.60299e-28
NZ_CP016448.1\|WP_069040787.1\|3854845_3855292_-\|MEKHLA-domain-containing-protein	gnl\|CDD\|378025	pfam08670, MEKHLA, MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.	1.64532e-60
NZ_CP016448.1\|WP_069040260.1\|3840993_3841335_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	2.12399e-54

>NZ_CP016448.1|WP_069040267.1|3845715_3846516_+|hydroxypyruvate-isomerase
MPRFCANLSLLFTEQPFVGRYAAAARAGFSGVECHFPYAVPADVLAAELLAHRLEQVLFNLPPGNWSAGERGIACLPDRVEEFEAGVAHALDYARVLGCRRINCLAGLAPDDSDRAELLAIMERNLRFAARALSREGIELMVEPINTRDMPGFLLNRSDDTLALIERVGEPNVKLQYDVYHMQIMEGDLARTLQRERARIGHVQIADNPGRHEPGSGEINYPFLFDWLDRIGYTGWVSAEYIPAGDTEAGLGWMRDRRDVGCGQVE
>NZ_CP016448.1|WP_069040266.1|3844856_3845606_-|2OG-Fe-dioxygenase-family-protein
MPAHITHGDDPHALAECIATHDFCFLPADHTKNGLASLEAGWNSDWERFAASWGSLERDTYMADGGRYRRRRYAVLSAPADSLDAVLEAHQPHYQSLDYNNLNGGVARHFAPIAPEVMQGATMQTAIRLGLGVFQRLHPGTAAHIEVHQFRIEALPDGAGKPTPEGVHRDGVDFVLVMMVRRENVESGTTEIFSPEGDPLDSFTLTAPCDAALVNDQRALHGVTPIHPLDPSKPAWRDVLVVTYRRAMR
>NZ_CP016448.1|WP_083224093.1|3844289_3844745_+|GFA-family-protein
MNTPFSGGCSCGAIRYTCSAKPLFSWNCHCRDCQRASGSAYCPVMYVSKGALTISGPEPRYASLHAESGRKVSRGLCAACGSNLFILADLVPDMQGVWAGSLDDPEIFWPQINVWTRSAPAWSRFDRSIECLDTAPDEQRFNALLQEALDL
>NZ_CP016448.1|WP_069040264.1|3843731_3844094_+|Na+/H+-antiporter-subunit-G
MDTLHPLVEALISLMLVIGALFTLVGGIGLVRFGDFFMRLHAPTKATTLGVGGVLIAAMIHSWASGRFGVPELLITLFLFITAPVSANLMAKAALHLKVQSKAGHPAGMDDGAQTQGEQG
>NZ_CP016448.1|WP_069040263.1|3843450_3843720_+|K+/H+-antiporter-subunit-F
MMLLALDIAVAAVALAMLLCAFRLFRGPEVTDRLLALDTLYINVVALVVLLGIRQQTELLFEAALIVAMLGFVSTVALARYLTRGDVIE
>NZ_CP016448.1|WP_069040262.1|3842947_3843454_+|Na+/H+-antiporter-subunit-E
MATETARSKRWLAHPFMSAIIAVSWLLLQQSFAVPQLITATVLALLLPRVLAGFLGPQVKVSSWATVVRFAGIVLWDIVVSNITVAKIVLNPAREPQPAWVPVSLDIRHPNGIALLATIITTTPGTVSCVIDEDRHEILVHALDCSDPAAMAQDIKNRYERPLREIFE
>NZ_CP016448.1|WP_083224092.1|3841331_3842948_+|monovalent-cation/H+-antiporter-subunit-D
MSMVSLISPHLPVLTVLLPAFTAMLLVLIGDSRDRLVLARRIALASVALGLLLALKLALDAHDGELRVYRVGDWPAPFGIVLVIDRLSALMLVLTQAVALPVLLYASGGWDSHGRHFHALIQFQLMGLCGAFVTGDLFNLFVFFEVLLIASYVLLVHGQGKERFRVGVQYVAINLAASALFLIGVALIYAVTGTLNMADLAQRVPQVTGDEALVLKAAALILLVVFGVKAAMLPLYLWLPATYAAASAPVAALFALMTKVGVYSIVRVHGVIFGADGGASALVAEPWLLPLALGTSALAVFGALAAQTLPRLVAYLTIASVGTILASLGLFSTAAWSAALYYMAHSTLVIAALFLLVELVASQRGDADSRLEAGAPVAQPVLLGLMLLLAAASAAGLPPLPGFIGKLMVLQASSGHDAQVWIWIVVLSVGFLTLVGLARAGSLLFWSTRPELAGTGTAAGASGKLVLATIALLVGGVAMTVLADPLKRYTDAAAAQLTDHRAYALGVLGGEGVDTTLPYVFPRPAPGVPVGQGTEGGP
>NZ_CP016448.1|WP_069040260.1|3840993_3841335_+|Na+/H+-antiporter-subunit-C
MNVSMEFLVASGIGWVTACGVFLMLRGRSFPVVLGLTLIGYAVNVFIFAMGRLWTGAQPIIGNGEVVADPLPQALVLTAIVIGFATTGFVIELALRSHHESGTDQVDGKEPGA
>NZ_CP016448.1|WP_069040259.1|3838180_3840997_+|monovalent-cation/H+-antiporter-subunit-A
MNPLATIVLLPLLAGTLLCFGLGRDNSPARRTLTALAAGGVTVAALALLLSLAPQILAGQTLIAHTDWVPSLGLAIGWRLDGLALLFALLITGIGLLIVIYAHFYLAASDPAGKFYTLLMLFMAAMLGVVMSDNIMLLVVFWELTSVSSFLLVGYWGHKEEARAGARMALAVTGGGGLVMLAGFVLLGQVAGTYELSELLTRGDIIKADPLYPLLLGLILVGCFTKSAQVPFHFWLPEAMAAPTPVSAYLHSATMVKAGVFLLARLYPALGGTDLFEGVVASFGLATVAFAAWVAIFKHDMKSLLAYSTVSHLGFITFLIGLGSPLSAVAAVFHILNHATFKAALFMSAGIIDHETGTRDLRRLGGLYRLMPWTATFAMTAAAAMAGIPLFNGFLSKEMFFHEAVESTLPWGAAVPVIATFAGICSMAYSVRLVHATFFNGAPKDLPPDAHPHDPPIGMLAPVALLAVLCVVVGVLPAITYGPLVHVAATALLGTAPPDYHLAIWHGFNLPLLMSAIAVAGGLALYFALQKSFGLPGYTPQRWSGKASFTCLMDSLFAFAGRLTGRIENGSLQRSLALMVLLVLVLAAATFGAADNLPQAGSRTLLDAPPLAIVVWALLLAAGAALVWTHHARFQAVVLTGVVGMVTALTFVALSAPDLALTQLSVEVVSTVLLLMGLALLPQTSPRESSSLRYGRDAALALAAGGGVAALAWLMLTRDHSSISWFFLDNTLPGGGGTNAVNVILVDFRGYDTFGEITVLGIAALGALALLDGLRVKRPAVDTAGRAWTFEQQPLLLRVAARIVLPLALVVSAYIFWRGHNLPGGGFIAGLVTAVALVLQFMALGQARAESALHGAAGRRFSRWIGSGLAIAGLTGVAAFVFGKPFLTSAHGHPTVAVLGELPLASAAVFDLGVYITVVGATLLMLSVLGAASKENHG
>NZ_CP016448.1|WP_069040258.1|3836717_3837959_-|site-specific-integrase
MSDESALPELPVPIRPLDEVTVPAALDGHDGINRADAARLQISASNDVDAIRCFLTEYEQSPGTHRIYQRECERLLLWSLIECGKPLSSLNRQDFEGYLHFLADPQPAKLWCAPKVPRVKPAWRPFVGPLSDSAVLTAIAAINSLMAYLVDAGYLSGNPLGLIRQRRRKLNMAATGPAQVIAQTEEMQKIERFLDAEMWHAVTRAIEALPRETDGERDEYERARFIAALLYMLAPRAGELESHRMNSFREERGRWWWHVVGKGGKQARVPVADDMVHALVRYRKHLGLSAMPKRTDLTPLLVSIKDRSPITARRLNQILKKLFNAAADLLPEASEHKREKLRAASAHWGRHTGITAKLDSGMNERFVQKDARHTDARTTQRYIHEEEERWHDEAQKQQLPWASPSDDDALKKP
>NZ_CP016448.1|WP_069040268.1|3846747_3847578_-|substrate-binding-domain-containing-protein
MDLIRRSFIASAVAAAIVMGAPFASAADRFITVSSTTSTEQSGLFKHLLPVFQAKTGIEVRVVALGTGQALDMARRGDADVVFVHDKAAEEKFIAEGFGVKRQEVMYNDFILVGPTSDPAKVGGGKDITEALKGIQAAQAPFVSRGDKSGTHAAELRLWKAAGIDLDAVKGAWYRDTGSGMGPALNTAASMNAYILADRGTWLSFKNRADLTVSVEGDKRLFNQYGVILVNPDKHPHVKRADGQAFIDWVVSAEGQTAIAGYRIDGQQLFFPNAVK
>NZ_CP016448.1|WP_069040786.1|3847568_3848276_-|ATP-binding-cassette-domain-containing-protein
MADALLTLDALRYDAGGRTLIRDVSLRIEAGRRTLILGPNGAGKSVLMRLMHGLIEPSAGRILWNGGSGRPAQAMVFQRPVMLRRSVLDNVIYALDLAGVPAAARRARALDVLERVGLTALADRPARVLSGGEQQRAALARAWALRPRVLFLDEPTASLDPGAAAEVERLIRVIADEGCSIVMVTHHLGQARRLADDIVFVDAGRITEHTPVAEFFASPRSAEAGNYLRGELSWT
>NZ_CP016448.1|WP_069040269.1|3848268_3848973_-|ABC-transporter-permease
MSTLTESFLTAGGLMLAGDPQLLGIVTLSLQVSLSAVFLASCLGLPIGAAVAVGRFPGRKPLTVILNGLMGLPPVVIGLLVYLLLSRAGPLGSFGLLFTPTAMVIAQVVLITPIVAALSRQIVADAWRDYEEQLRSLGASTPRAAFTLLVDTRFSLSTAVLAGLGRAVAEVGAVMIVGGNIDGVTRVMTTSIALETSKGDLPLALALGFILIAIVLLLNALAHAVREWAVRRHG
>NZ_CP016448.1|WP_069040270.1|3849096_3850185_+|helix-turn-helix-transcriptional-regulator
MSEIAVNTPRLGIEWDFGPDAPAGIGRLLSLLAAIEATGSIAGAARQNGLSYRNAWGLINAWQVYFGQTLISTARASGSTLDDFARQLLAVDRDARQSLAAALHMASQPMRALPRQSSGAVAGAMRIAASHDPLLNDLIRQLRHDGGSATLSTHGSLESLLALAARRCDIAGFHCPIGELGRDIWTLYLAQHGLPRLRLLGFARRTQGLILARGNPRSVRGLSDLSRADLRFVHRQPGAGTRLAFDQLARQAGLDTRALNEGDEEHTHAAVAALIASDEADAGLGLEAFARRLGLEFLPLFEEMYFLALRDGPASRRTLDVLGSLLRQPDWRARTQGLSGYTLDEAGVEYDVPEAGRLLFGA
>NZ_CP016448.1|WP_069040271.1|3850198_3851389_-|transcriptional-regulator
MNNTSGRLADRRRRIESLRRGERSAGENIVVVGMDIAGSWQRSREAVSETCSAAPLDDTAPDWTGSAYGQALVACVDELETVAIESGMVAAVSDADGRLLWTGCSRSMRNRAERVHFVPGGRWDERSVGTNALALALRHRRPASVFSAEHFMPAVQDWVCYAAPVRDTISGEVMGVVDLSTTWNRHSPLALHAVERFAERVSQALQGVSQAPVLRLRMLGTPQASMHGKLLALSPRQMEILCLLALHPEGMDLERLHAAIYGDRTVGVATLKTEVSQLRERLGGAIGSRPYRLLVNWQADFMDLEQALNAGRVEAALAGYRGDFLPRTESPLLRTWRDCLESRLSDAIFRIDDPDLLLTHLGQSPEAVDAVERLVELLPGDHPVRARLLQTRDSER
>NZ_CP016448.1|WP_069040272.1|3851510_3853025_+|aldehyde-dehydrogenase-family-protein
MRYADPGQPGSKLTFKARYDNFIGGEWVPPVEGQYFDNTTPVTGKVFCQVARSQAADIELALDAAHKAREGWARTAPAQRAAVLFRIADRLEANLELLAVAETWENGKPVRETLAADIPLAIDHFRYFASCIRAQEGALSEIDETTVAYHFHEPLGVVGQIIPWNFPILMAAWKIAPALAAGNCIVMKPAEQTPVSLLVLIELIQDLLPPGILNIVNGFGIEAGKPLATNKRIAKIAFTGETTTGRLIMQYASQNIIPSTVELGGKSPNVFFDDVMDADDDYFDKCLEGFAMFSLNQGEVCTCPSRALVQENIADKFIERAIARVNMVRGGHPLDTDTMIGAQASSDQHEKILSYIDIGRQEGAEVLTGGGVRKEAEAGGYYIQPTVLKGHNKMRVFQEEIFGPVLALTTFKDEADALAMANDTLYGLGAGVWSRSVHRSYRMGREIKAGRVWTNCYHLYPAHAAFGGYKQSGIGRENHKMMLDHYQQTKNLLVSYSTKALGFF
>NZ_CP016448.1|WP_069040273.1|3853212_3853590_+|DUF779-domain-containing-protein
MVTRVSATPLALDWIDRLARKHGPLMFHQSGGCCDGSAPMCYPQGEFTLGSSDVQLGEIGGMPFWMSESQFEYWQHTHLIIDAVPGRGAGFSIESPEGIRFLTRSRLYEPHEEAELVLLGAPRHG
>NZ_CP016448.1|WP_069040274.1|3853622_3854849_-|amidohydrolase
MSSTDSSPHPLVEALGERHARWTSIRRDLHAHPELAYEETRTAAIVARTLRASGIEVHEGIGRTGVVGVLRAGHSKATIGLRADMDALPMTEQNTFAHRSTHTGRMHGCGHDGHTAMLLAAAEYLAATRCFDGTVNFIFQPAEEGRGGAAAMIADGLFERFPMQSVFGLHNWPGLPVGEMAVHDGPAMASSDEIEIVIEGRGAHAAMPHLGADPVLAGSAIVQALQSIVSRTVSPVDCGVVSITQFHAGEAYNVIPQSATLRGTARAFSPEVRDQLEAGIRRVAEGVAAAHGVTAAVSYRRGYPPTVNSPAEAAFCAAVGRELLGDACVRTDYPPSMGAEDFAYMLECKPGCYIWLGNGGGPDAGSRPGHEEGGGCMLHNPRYDFNDAVIPLGVAYWTRLVERFLQPE
>NZ_CP016448.1|WP_069040787.1|3854845_3855292_-|MEKHLA-domain-containing-protein
MSVMPDHKFLREHSRLLAESFERLTGQRLPSDSLTLYNAHFALVSHGTQTDPVFNYANLFAQRLFGYPWDEFVTLPSRLSAREPERDERARLLEMVTQQGYISDYCGVRVRRDGTLFRISHATVWKVLDADGQFCGQAAMFSEVEELQ
>NZ_CP016448.1|WP_069040275.1|3855316_3856399_+|ligase-associated-DNA-damage-response-exonuclease
MRHDLITLRPEGLYCPAGDFYIDPWRPVDRAVITHAHADHARTGHRRYLASAEGERVLRARLGDIALQTLTYGERMHIGDAAVSLHPAGHVLGSAQVRVEVAGEVWVASGDYKLEPDATCTAFEPVRAHAFITESTFGLPIYRWPAQDALLAELNEWWRGNADAGRASVVFAYAFGKSQRILAGLDPAIGPIVCHGAVEALNRAYRDSGIALPATAMVSDGLDAAALRRALVIAPPSAQSTPWMKRFGDYADCFASGWMQVRGARRRRGVDRGLVMSDHADWPGLLSAIGATGASRVIVTHGHVQPLVRWLTEHGIEAGAFATAFGQEADDDAVATDSAATAASQREADGGQTGDEQAAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	495949-495988	1	0.975
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	2938167-2938206	1	0.975
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	414643-414682	1	0.975
NZ_CP016448_10	10.1\|3214699\|35\|NZ_CP016448\|CRISPRCasFinder	3214699-3214733	35	NZ_CP016448.1	3214620-3214654	1	0.971
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	3282678-3282717	2	0.95
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	418614-418653	2	0.95
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	460277-460316	2	0.95
NZ_CP016448_2	2.1\|907522\|40\|NZ_CP016448\|CRISPRCasFinder	907522-907561	40	NZ_CP016448.1	2963567-2963606	2	0.95
NZ_CP016448_9	9.1\|3173562\|28\|NZ_CP016448\|CRISPRCasFinder	3173562-3173589	28	NZ_CP016448.1	540159-540186	2	0.929

1. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 495949-495988, mismatch: 1, identity: 0.975

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgatacgcactttgcacggcgatggtcgcggcac	Protospacer
*********** ****************************

2. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 2938167-2938206, mismatch: 1, identity: 0.975

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgatacgcactttgcacggcgatggtcgcggcac	Protospacer
*********** ****************************

3. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 414643-414682, mismatch: 1, identity: 0.975

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgatacgcactttgcacggcgatggtcgcggcac	Protospacer
*********** ****************************

4. spacer 10.1|3214699|35|NZ_CP016448|CRISPRCasFinder matches to position: 3214620-3214654, mismatch: 1, identity: 0.971

cccccgggccggcctgcgtccgtcccgccccccga	CRISPR spacer
cccctgggccggcctgcgtccgtcccgccccccga	Protospacer
****.******************************

5. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 3282678-3282717, mismatch: 2, identity: 0.95

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgatacgcactctgcacggcgatggtcgcggcac	Protospacer
*********** *****.**********************

6. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 418614-418653, mismatch: 2, identity: 0.95

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgatgggcactttgcactgcgatggtcgcggcac	Protospacer
**********.************ ****************

7. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 460277-460316, mismatch: 2, identity: 0.95

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgataggcactttgcacggcgatggtcatggcac	Protospacer
*********************************..*****

8. spacer 2.1|907522|40|NZ_CP016448|CRISPRCasFinder matches to position: 2963567-2963606, mismatch: 2, identity: 0.95

tcgccgcgataggcactttgcacggcgatggtcgcggcac	CRISPR spacer
tcgccgcgatacgcactttgcacggcgatggtcgcagcac	Protospacer
*********** ***********************.****

9. spacer 9.1|3173562|28|NZ_CP016448|CRISPRCasFinder matches to position: 540159-540186, mismatch: 2, identity: 0.929

ttccacggctggccctacatggccagcc	CRISPR spacer
ttccacggctggccttgcatggccagcc	Protospacer
**************.*.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016448_11	11.2\|3846665\|29\|NZ_CP016448\|CRISPRCasFinder	3846665-3846693	29	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	398912-398940	7	0.759
NZ_CP016448_11	11.2\|3846665\|29\|NZ_CP016448\|CRISPRCasFinder	3846665-3846693	29	MT316458	Microbacterium phage McShie, complete genome	13884-13912	7	0.759

1. spacer 11.2|3846665|29|NZ_CP016448|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 7, identity: 0.759

tcacctctccgaccttcgcacccacacgc	CRISPR spacer
gaacctctctgaccttcgcgcccactggg	Protospacer
  *******.*********.*****  *

2. spacer 11.2|3846665|29|NZ_CP016448|CRISPRCasFinder matches to MT316458 (Microbacterium phage McShie, complete genome) position: , mismatch: 7, identity: 0.759

tcacctctccgaccttcgcacccacacgc	CRISPR spacer
cgacctctccgatcttcgcaccctcggcc	Protospacer
. **********.********** *.  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

280560 : 289352

Lake_Baikal_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069037560.1\|280560_281403_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.3e-48	42.0
WP_069037561.1\|281399_283079_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.6e-155	54.1
WP_069040369.1\|283182_283377_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_069037562.1\|283382_283724_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_069037563.1\|283742_285605_-	Fe-S protein assembly chaperone HscA	F2Y0P3	Organic_Lake_phycodnavirus	2.3e-101	42.3
WP_069037564.1\|285604_286171_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_069037565.1\|286200_286524_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	8.3e-23	49.5
WP_069037566.1\|286534_286942_-	Fe-S cluster assembly scaffold IscU	A0A2H4N7M4	Lake_Baikal_phage	4.4e-53	80.9
WP_069037567.1\|286975_288187_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_069037568.1\|288212_289352_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	1.1e-21	27.9

DBSCAN-SWA_2

3395259 : 3406537

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069039917.1\|3395259_3396291_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.9e-28	38.2
WP_069039918.1\|3396303_3398673_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_069039919.1\|3398706_3399015_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.1e-13	43.3
WP_069039920.1\|3398998_3399367_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_069039921.1\|3399599_3400343_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.5e-70	52.4
WP_069039922.1\|3400339_3400993_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-32	47.3
WP_069039923.1\|3400989_3401985_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	3.7e-13	35.1
WP_069039924.1\|3401988_3402942_+	RNA polymerase sigma factor RpoS	A0A2I7SAT0	Vibrio_phage	4.6e-29	29.9
WP_069039925.1\|3403171_3403945_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA
WP_069039926.1\|3403952_3404222_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_083224069.1\|3404235_3404988_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_069039927.1\|3404984_3405404_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA
WP_069039928.1\|3405652_3406537_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	5.6e-21	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016448

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection