CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	0 crisprs	NA	0	0	9
NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	2 crisprs	DEDDh,cas2	0	12	0
NZ_CP016455	Sphingobium sp. RAC03 plasmid pBSY17_3, complete sequence	0 crisprs	csa3	0	0	0
NZ_CP016454	Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence	0 crisprs	NA	0	0	3
NZ_CP016456	Sphingobium sp. RAC03 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG,RT	1	0	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8220

Polaribacter_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046194743.1\|1247_1511_+	hypothetical protein	NA	NA	NA	NA
WP_069067106.1\|1583_2084_+	hypothetical protein	NA	NA	NA	NA
WP_150125859.1\|2092_2773_-	hypothetical protein	NA	NA	NA	NA
WP_046194741.1\|2949_3594_+	hypothetical protein	NA	NA	NA	NA
WP_069067108.1\|3606_4071_+	hypothetical protein	NA	NA	NA	NA
WP_046194739.1\|4067_5204_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_069067109.1\|5200_5524_+\|transposase	transposase	NA	NA	NA	NA
WP_069067110.1\|5542_6343_+	hypothetical protein	A0A0F7IKG9	Polaribacter_phage	1.1e-10	32.4
WP_069067111.1\|6358_6739_+	hypothetical protein	NA	NA	NA	NA
WP_069067199.1\|6886_7864_+	hypothetical protein	G9BWC3	Planktothrix_phage	1.2e-21	31.2
WP_046194762.1\|7869_8220_+	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	6.3e-08	34.3

DBSCAN-SWA_2

15809 : 16130

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046194724.1\|15809_16130_+	single-stranded DNA-binding protein	C5IHK5	Burkholderia_virus	1.4e-06	33.7

DBSCAN-SWA_3

29752 : 30205

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069067203.1\|29752_30205_-	pseudoazurin	C7BV88	Synechococcus_phage	5.8e-06	38.8

DBSCAN-SWA_4

36660 : 45173

Pandoravirus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069067137.1\|36660_38403_-	PQQ-dependent dehydrogenase, methanol/ethanol family	S4VRB1	Pandoravirus	3.4e-14	23.6
WP_083217235.1\|38484_39105_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011950768.1\|39296_40790_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_063142326.1\|40786_41554_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.5e-43	40.0
WP_083217228.1\|41996_42650_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	8.9e-48	43.3
WP_171899306.1\|42687_43074_+	hypothetical protein	NA	NA	NA	NA
WP_069067140.1\|43079_45173_+	recombinase family protein	I3VYZ3	Thermoanaerobacterium_phage	7.6e-08	25.9

DBSCAN-SWA_5

51449 : 55156

Ralstonia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011950653.1\|51449_52010_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.5e-29	45.4
WP_037555775.1\|52141_55156_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	7.1e-209	40.3

DBSCAN-SWA_6

79528 : 80026

Erythrobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069067161.1\|79528_80026_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.0e-23	52.4

DBSCAN-SWA_7

104153 : 105146

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069067185.1\|104153_105146_-	lytic transglycosylase domain-containing protein	A0A0S2SXN2	Bacillus_phage	6.5e-10	42.2

DBSCAN-SWA_8

112181 : 113381

Macacine_betaherpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069067215.1\|112181_113381_+	AAA family ATPase	A0A2I6B2X3	Macacine_betaherpesvirus	3.1e-46	36.7

DBSCAN-SWA_9

117648 : 126330

Chionoecetes_opilio_bacilliform_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069067191.1\|117648_121869_+	strawberry notch family protein	A0A1Q3DLU0	Chionoecetes_opilio_bacilliform_virus	2.4e-08	24.7
WP_150125866.1\|121934_124052_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.3e-28	31.9
WP_069067192.1\|124137_125097_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.8e-65	48.0
WP_069064865.1\|125391_126330_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.9e-28	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016453

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016453_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016453_1

626954-627187

Unclear

Consensus_repeat	Method
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CRISPRCasFinder
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CRT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATC	PILER-CR

3 spacers

cas2

The CRISPR arrays of NZ_CP016453_1

>merge|NZ_CP016453|1|626954-627187|CRISPRCasFinder,CRT,PILER-CR
GACACAGCTGGACCGCGATCTCTGAGCGGTTATAATGCAATCGCGGCGTCAATGGTATTCGAAGAGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATCTCGCGCTTCACGCACGCCAACTATGCCCTGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATCAAAGCGTCGATCGGCGGTGGATCTGCAATGTTGCCGCTGGACCGCGATCTCTGAGTATCCGTGATG

>NZ_CP016453|1|1|626954-627187|CRISPRCasFinder
GACACAGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCAATCGCGGCGTCAATGGTATTCGAAGA
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CTCGCGCTTCACGCACGCCAACTATGCCCT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CAAAGCGTCGATCGGCGGTGGATCTGCAAT
GTTGCCGCTGGACCGCGATCTCTGAGTATCCGTGATG

>NZ_CP016453|1|1|626954-627186|CRT
GACACAGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCAATCGCGGCGTCAATGGTATTCGAAGA
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CTCGCGCTTCACGCACGCCAACTATGCCCT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CAAAGCGTCGATCGGCGGTGGATCTGCAAT
GTTGCCGCTGGACCGCGATCTCTGAGTATCCGTGAT

>NZ_CP016453|1|1|626960-627121|PILER-CR
GCTGGACCGCGATCTCTGAGCGGTTATAATGCAATCG	CGGCGTCAATGGTATTCGAAGAGTTGCC
GCTGGACCGCGATCTCTGAGCGGTTATAATCTCGCGC	TTCACGCACGCCAACTATGCCCTGTTGCC
GCTGGACCGCGATCTCTGAGCGGTTATAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016453.1\|WP_069064264.1\|624849_625725_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|378484
NZ_CP016453.1\|WP_037480334.1\|628885_629191_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP016453.1\|WP_069064268.1\|637149_638934_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|223107
NZ_CP016453.1\|WP_069064495.1\|631953_632820_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP016453.1\|WP_069064496.1\|632831_633677_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP016453.1\|WP_069064258.1\|616030_617713_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP016453.1\|WP_069064266.1\|633846_635676_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP016453.1\|WP_083216996.1\|619340_620153_-\|DUF1206-domain-containing-protein	unknown	unknown	gnl\|CDD\|377695
NZ_CP016453.1\|WP_069064263.1\|621971_622787_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP016453.1\|WP_069064261.1\|620241_621012_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_CP016453.1\|WP_069064269.1\|642176_642986_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP016453.1\|WP_069064259.1\|617715_619224_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236461
NZ_CP016453.1\|WP_069064270.1\|643139_644705_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341276
NZ_CP016453.1\|WP_006966739.1\|627188_628130_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP016453.1\|WP_069064271.1\|644722_645871_+\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379194
NZ_CP016453.1\|WP_069064267.1\|635776_637153_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176891
NZ_CP016453.1\|WP_069064262.1\|621026_621956_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP016453.1\|WP_069064257.1\|613543_615997_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP016453.1\|WP_069064494.1\|622898_624785_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP016453.1\|WP_037480778.1\|612337_613450_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
NZ_CP016453.1\|WP_069064264.1\|624849_625725_+\|DUF2520-domain-containing-protein	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	1.57557e-30
NZ_CP016453.1\|WP_037480334.1\|628885_629191_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.21295e-22
NZ_CP016453.1\|WP_069064268.1\|637149_638934_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	2.58927e-101
NZ_CP016453.1\|WP_069064495.1\|631953_632820_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.45677e-27
NZ_CP016453.1\|WP_069064496.1\|632831_633677_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.19016e-58
NZ_CP016453.1\|WP_069064258.1\|616030_617713_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.74186e-109
NZ_CP016453.1\|WP_069064266.1\|633846_635676_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.11884e-59
NZ_CP016453.1\|WP_083216996.1\|619340_620153_-\|DUF1206-domain-containing-protein	gnl\|CDD\|377695	pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.	1.73917e-13
NZ_CP016453.1\|WP_069064263.1\|621971_622787_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.45352e-31
NZ_CP016453.1\|WP_069064261.1\|620241_621012_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	4.24929e-83
NZ_CP016453.1\|WP_069064269.1\|642176_642986_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	5.05076e-44
NZ_CP016453.1\|WP_069064259.1\|617715_619224_-\|AAA-family-ATPase	gnl\|CDD\|236461	PRK09302, PRK09302, circadian clock protein KaiC; Reviewed.	2.19046e-72
NZ_CP016453.1\|WP_069064270.1\|643139_644705_+\|AMP-binding-protein	gnl\|CDD\|341276	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes.	3.49771e-111
NZ_CP016453.1\|WP_006966739.1\|627188_628130_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.57687e-20
NZ_CP016453.1\|WP_069064271.1\|644722_645871_+\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	4.70273e-14
NZ_CP016453.1\|WP_069064267.1\|635776_637153_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176891	cd08882, RHO_alpha_C_MupW-like, C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. MupW is part of the mupirocin biosynthetic gene cluster in Pseudomonas fluorescens, and may catalyze the oxidation of the 16-methyl group during biosynthesis of this polyketide antibiotic. Mupirocin is a mixture of pseudomonic acids which targets isoleucyl-tRNA synthase and is a strong inhibitor of Gram positive bacterial and mycoplasmal pathogens. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	2.07153e-55
NZ_CP016453.1\|WP_069064262.1\|621026_621956_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	3.38269e-30
NZ_CP016453.1\|WP_069064257.1\|613543_615997_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	3.7485e-85
NZ_CP016453.1\|WP_069064494.1\|622898_624785_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP016453.1\|WP_037480778.1\|612337_613450_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.44675e-34

>NZ_CP016453.1|WP_069064264.1|624849_625725_+|DUF2520-domain-containing-protein
MVSTSPYRRIGIIGTGRVASAIGCALAAQSNNPLLIWGRNPTKCAEAVGVLGRAQAAGDMAQITRDCDLIILAVADDALADIVAALAQAEATDRPRFIFHVSGRSGATILDPLRSATSMTAAIHPAMTFTGNPTNEVKHMVDARFAVTGSTEQANAAALQLVALLGGIMVPIEEAQRALYHAALCHGANHLVTLIAGACQALAAAGVAEPSALLGPLVRAALDVSLDHGMAGLSGPLLRGDDETIAKHLAALGEQCPTLLPPYKAMALATLDELDRHNSAPRSTVACRTLL
>NZ_CP016453.1|WP_069064494.1|622898_624785_+|molecular-chaperone-HtpG
MTTETATAPETHAFEADVSKLLRMMVHSVYSDRDVFLRELISNAADACEKLRYEGIAMPSLLGDDPQPRIRVLLDADQNRLTIEDNGIGMTAAEMGETLGTIARSGTKAFMERLAAEAGKEGSQLIGQFGVGFYSAFMVASQVEVFSRRAGSQDAASWTSDGQGTYTIAPVDLADAPTRGTRVVLHLMEDAKSYAERFTVERIIKAQSGHVPVPIMLFEKPDADGVDIADGAALWLKPKSEISEEDYADFYRSVAGQYDKPAHTVHYRAEGRYEYSVLTFIPETKPFDLFDPDRKGHIKLYVRRVFITDEAPILPRYLRFVRGLVDSADLPLNMSREMIQDSPVLGAIQKGVTGRLLGDLQKLADNDAEAYQRIWENFGPVLKEGLYEDFERREALLGLARFKSTTSGEGWRSLKDYVAQLKENQTAIYYATGSDLDRLFTSPQLEGFRARGIEVLLLPDQVDNFWTTMGVDYEGKPFKSVTQGGADLGLIPLVEGADKPTEQENAAVADFLAFAKTTLADAVSDVRASDRLTTSAVCLVAPESGMDRQLEKLLASAGQLPTAALPVLEINPRHALIQKLASSDDADGLKSDLAHLLLDQARIADGEQPTDARAFSDRLDRLMSRAVG
>NZ_CP016453.1|WP_069064263.1|621971_622787_+|transglutaminase-family-protein
MLIRCGYDIAFNTDAKTAMVALLSVHPSRHQDLRTPQRLMASPDIPLYQFEDGFGNVATRFAIPPGGVTLSCDFVIEDNGEPDVRAPDGPQIPVEDLPDAVMPFLLGSRYCETDRLMDVAWGNFAHYASARDRVDAIVDFVHNHIEFGYHYARSDKTAWNGYQERRGVCRDFAHLAVTLCRCMNIPARYCTGYLGDIGIPPVDAPMDFSAWFDVYIDGNWYTYDARHNRPRIGRILMARGRDATDVALTTAFGPANLVRFDVHTDEVQSIE
>NZ_CP016453.1|WP_069064262.1|621026_621956_+|transglutaminase-family-protein
MPLLTIRHSTIYHYQQPVSLGEHRIMMRPREAFDQRLLSARLDIDPAPSELRWLHDVFGNSVAIATFKARAAQLVVNSEATLDHAPLAQKQVDVEPYARLFPFTYSSEDMPDLLRSIEREYHDPERIVDNWARSFVSNHGNTSTIALLTEIATGIQREFTYVPRHEKGTQSPIETLKLRQGTCRDFAVLMIEAVRALGFAARFVSGYVYNPSRSEDVVGGGNTHAWVRIFLPGSGWVEFDPTNGIIGNRGLIRVAVARDPYQALPLSGTWFGPPGSFLNMDVSVDVLRADPSLFPSTNHGAINSRHIGA
>NZ_CP016453.1|WP_069064261.1|620241_621012_-|N-formylglutamate-amidohydrolase
MAGRTAENLLGPGDPLPFGLFNAEGGSPFLLIGDHAGAAIPGALGDMGLSAADRGRHIAIDIGVYGLGRALARRLDAPFLHQSYSRLVIDCNRDPAHAEAIPALSDGTVIGGNADLDMAEKAERVRAIHRPYHQAMADLIAARTAAGRETILLSLHSFTPVLNGDVRPWDIGILHWQGRTDFALSMLDQLQSIAGVVVGDNEPYAMDATDYTVPFHAFPNGLRYAEIEVRQDLIQDAGGQALWAERITSAAQGAIA
>NZ_CP016453.1|WP_083216996.1|619340_620153_-|DUF1206-domain-containing-protein
MTYSDRMTLFARIGFAARGLVYILIGWFALDVASTGGEVKDNQGALGSMVDAPLGHVLLAICALGFAGYAIWRLTEAAMDPENCSRTLKGKFKRVGYAMSGISHVILAVAAARLALRQTSAQEGSPGDASAESWSAWLLSQPGGVVLLVLVGLVLFAVAATQAIKAYKAEFRELDGDTPAPDYVRWIGRCGYAARALIFALIGWFIISAALNHDPDQAGGLGEALKQLRAQEEGTIILSVVAFGLGLFGVFSLIEARYRRMRVAKPDFLR
>NZ_CP016453.1|WP_069064259.1|617715_619224_-|AAA-family-ATPase
MTDLASEDRKVTISTGIADLDNILGGGLTANRAYLLEGTPGSGKTTIALQFLLEGARQGERGLYITLSETSAELKEVARSHNWVLDDIDLFELVSGEGLDPDAEQSILEPSEVELGETIQGVMECVDRIRPVRVVFDSLSEMRLLAQNSLRYRRQILALKQYFSQRHCTVLMLDDRSSDPNDLQLHSIAHGVITLEQAAQDYGTERRRLRVVKMRGVKYRGGYHDFVIETGGVAVFPRLVANEHHGQYVQQLVSTGLERMDQMLGGGISVGTNLLFNGPSGVGKTTTAVQFGLSAIARGEKAAYFLFDEGRPTMITRARAMGMDLQPHLDSGALTVTQIDPAEMSPGEFASWVRRAVEEDGVRFVVIDSLNAFLQAMPGEKYLVLQMHEMLSYLNQQGVITVLILGQHGIIGEVRSDVDLSYLSDTIILFRYFEAKGEMLKAVSVVKSRTTPHEATIREYRLGRNGITVGEPLKDFDGVLTGVPTYSGKTPLLAAEPAASET
>NZ_CP016453.1|WP_069064258.1|616030_617713_-|response-regulator
MEDRILVLALRGRDAAVMETLLAKQDYACTTCADARALSDELTRGAATAIITEESLAGADRSALDAWVAQQPPWSDFPFILLATRRAGHRPRHAMLVLERLGNVIVLERPIHSETLGSAVRSAMRVRRRQYEARERLAALQLAEERLTHLNANLETRIAERTSELSRANNMLMEEVAERERAQTALVQSQKMEAVGQLTGGIAHDFNNLLTVVSGNLEMIERRSDDERILRHARFAAEATDRAAKLTRQLLAFSRTQQLALAPLSLNALVEGMGDLLARTIGPRIDQRRVLADSQPWVMADVHQLELAVLNLAINARDAMPDGGILTIETDAGRSAPEGVRPGRYGVVRVRDNGVGIPRPILSKVFDPFYTTKPLGKGTGLGLSQVFGIARQSGGIAQIDSVQHEGTTVSIWLPLAEQPVVDTELVAQISPSDRVRAKLNILVVDDDEGVRRFVAEGLESFGYHITQAASGAEAVTMLDAALPDVMIVDFAMPGMTGIELAEDARRRAPDLPIIMVTGYAEEGVSADTSLITHIVRKPFKIDALVGVLDMTTGILASAPD
>NZ_CP016453.1|WP_069064257.1|613543_615997_+|response-regulator
MMMRGTHDMSLVILSILIAMFASFTALSLATRMRASTGWMRFMWVTAAAIALGGGIWSMHFVAMLAFTMPGMVMRYDLALTLLSLALALGFTWAGFWMLSRSAMAPLRLAVAGLLISAGVLGMHYLGMAAMHMAATLRYDPFWLLLSVLIAVGAATAAMWLAARDHQLSHRLVAAAIMGVAIAGMHYAGMRAAIFTAKTGMTMTGGGGNLGQTYLAMLISAVTVLILLLALGAAGLERLFRNITRREARIALRLKIADVLRGRNTEEALQEVAALMGAHFGVARTGYGQLDPVEDIFHYDICWTDGSAPPLLGRYPTKTFGPKIVTALKAGQTVVIDDLLHSDLSDDIRLHADAKSVDTRAILVVPFIRDGRLQTIVYLNDRHARAWQRDDTAFMEEIAERTRLVIERAAVEEQLRELNATLEGRVEARTRELRDAQEALLHSQKLEAIGQLVSGMAHDFNNVLAAIVGAYDLILRRPDDLDRVRRYAQGGLDAAERGAKLTAQLLAFARAQRIQLQPLLVCDVIRPLHDLLARTLGPMITLDFQLNPNPVPVLADATQLEMMVLNLAINARDAMPNGGTLAISTHVRTISGDSEIADNDYVEIAVRDTGTGMDEVTCRRAMEPFFTTKAVGKGTGLGLAQIYGSTRQAGGTVRLESILGEGTTVRVLLPCTTWQPLAASPAAALAPAAERDAVRILLVDDDDSVRTIVAGALESHGHHVVEAIDGASALIKLDAQDFDIAIIDFAMPGMNGAELAARIAQQCPSLPVMFASGFADTDAIDSVMGGNAVMLRKPFRIDELLAAMQGLLVARPLDSVA
>NZ_CP016453.1|WP_037480778.1|612337_613450_+|ROK-family-transcriptional-regulator
MQFPSIDKDQRRILQRLRKSGPLSRSALSAALEISGTALTRLSRDLLALGLVEEMPDVDVQRRGRPAIPLRLAPRGGYAVGATAHKGLIEIALVDFTGTTIAIHHEATEPIDPRAFAHKIRRITHMLVDRHGLLGQRMLGIGIAVPGPALSLAGDRWAVVDVLPDWRDAPLHDIFSAEMGWPLWIENDANAAAIAEYYLGGLIRDFSSMVILLLGFGIGAGVIVDGRLVRGQFGAAGEIGALFPGDRPRPSPLDLLAVLRAGGCDISSVAEIDFDATDQAPIIETWLDRAARQLEIVCNSAFAWFDPGAIMLAGALPRAILDGLADRLRSAHLVTMFDHRRPPVQVSNLGSSPITLGAALLPIHALSAEI
>NZ_CP016453.1|WP_006966739.1|627188_628130_-|IS110-family-transposase
MSNSLPQTIGIDISKATLDCYVHPIGIERQFPNTTKGHKTLIAWAGQWEVERIAYEATGIYHRALEVALGHMPCVKLNPERARRFAQATGTLAKTDRIDARLLARMAVTLKPPVRPARSPQQNQLAELVNARDGLVRDRTALKNREKNLTVTLLKRQCSQRLEQIARHIAALDAEIAAVIAADEKLVRRHHILTSIAGLGTLTANQIIATMPELGSLDNKQAASLAGLAPVARQSGQWKGKSFIRGGRANVRQALYMPALVAARFNPNLKAKYQQLIAAGKPAKIAITAIMRKLIVTANALLRADRLWTTACA
>NZ_CP016453.1|WP_037480334.1|628885_629191_-|CRISPR-associated-endonuclease-Cas2
MWIFVMFDLPVGTKEQARAATKFREFLLDEGFEKSQFSVYARFCNGKEQFETYMRRVEAKLPDNGDVHILSFTDRQYENIVRFSGQRRRRQRKNPDQLALF
>NZ_CP016453.1|WP_069064495.1|631953_632820_-|alpha/beta-hydrolase
MSAIERQTLRGADVDLAADVTGPVDGQPILFLHGSGQTRQSWGKALVEAGRHGFRALSMDLRGHGDSGWSPDGRYDLTVFADDLRAVLAQLDRPPVVVGASLGGIVGMIVAAADPAAIRALVLVDITATVDMEGANEVIAFMNAGSDGFASIEEAAAAVSAYLPHRDKPQSSRGLAKNLRQRGARWYWHWDPAFMTMGVDAKQEAEGPTVLETAARALTIPTLLIRGGRSRIVTEEGARAFLEMVPHADYVHIDGAHHMVAGDANDAFNDAVFRFADRQVEGSAQADG
>NZ_CP016453.1|WP_069064496.1|632831_633677_-|SDR-family-oxidoreductase
MAQQLMDFTGRTIIVTGAAGGGIGTATTKMLAQAGATVIAAGRTQAKFDAHIAPLIAQGLAIVPVIADVGTDEGVAKVMEAAVAAPGTLHGLANVAGGAAPQTWMRAERVTRADWRALFEQNLETMFFMSQAVARELRARGNPGAIVGVSSISGMNSAPYHIAYGTAKAAIVAATRTLATELALDNIRVNTVAPGMTITPGSGAYIDADVARDQAAIAMGRRARPEEQAGAIAFLLSDLSSYITGQTILVDGGLNLKWTHLGADNTSLFLKNEDFRAAIKA
>NZ_CP016453.1|WP_069064266.1|633846_635676_+|NAD(P)/FAD-dependent-oxidoreductase
MSCTPTRTPAPDTFDIPTLRAKYREERDKRLRGDGQAQYQPTTDDTTHSYDVDPHMAVTPRDPLVEDLDVLVLGGGFAGVLAGYHLTKQGVTDFRNIDHAGDFGGVWYWNRYPGIQCDNDAYCYLPLLEETGFMPSKKFADGAEIQAYIKQIAQRFGFHDRALFHTLVTALKWDDTLQRWHVETSRGDHFRARFVIMGCGVLNMPKLPGIEGIDRYQGKIFHTARWDYGYTGGSYKSPVLDKLADKRVAILGTGATAIQAVPHLARYAKQLYVIQRTPSTVDERPNPPTDPDWAESLQPGWQAERQANFHRAAMEFFLPGEQDLICDIWTEIARNLHAELEAEGWPELSPEEFMARREVVDYRVMERLRARVDDMVKDEATAASLKPWYRFLCKRPLSSNDFYAAFNQPNVKLIDVSDAKGLERMTETGFVSNGVDYTVDCMIFASGFEVTSDLKRRWGIDVVEGRNGLSIYDHWANGPKTLHGTMTHGFPNQFFIGYIQGGLNASVTEQFGRQAEHIAHIIQATMAKGAASVETTADAQDAYVQHFHDVEYDTSAFQIECTPSYFTNEGQVKAPWALFRSYGPGWGAFQTLLQDWRARGDLAGMELRS
>NZ_CP016453.1|WP_069064267.1|635776_637153_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MNSPTTISVDDLAKPLTYPVEAFLSRDYALAEKENLWPKVWQVAARFEELPDVGDWLTYDICDDSIIVIRVAPDRLKAYHNVCPHRGRQLVDVPEGAHSAKGNKRRNFICGFHGWTFDIEGNNSYILDPQDWQGALTPDCTHLSEVKVDLWGGWIWIHMDLDAEPVTEFLGDAGRILSYFEMDKMRYKWRKWVVYPSNWKTALEAFMEPYHVAGTHSQLLAYGDYYAYSAAYGLHGVSGFDQRDPAFAMSQSSSVTRAGKGDDPRRSTYELIRENYETLNYAASTQTLVDAASRLVDELPEGTAAADVIAHWLKSARADDAARGVFWPDIPPDVMAEAGLAWHVFPNMSVLQGITFALCYRARPFGDDPNMCIFESYAIERFPEGQEPATEWEHAEPTAEGWGAVLAQDFSNMKWVQKGMKSRGFRGPLPNPHQERKITNFHRNLAAYMGTGAPRLLK
>NZ_CP016453.1|WP_069064268.1|637149_638934_+|thiamine-pyrophosphate-binding-protein
MSYDDPKPATAATASGKSGTPVYKRVLDLFEAEGINTLFGIPDPNFVHMFLEAERRGWTVVAPHHEAAAGFMAEAASRITGKPAVAVGTLGPGIANMAPAIQCALVEHSPVIFLSGQRARVTEQRVRRGRIQFVKQMPLFENSVKYAASIEYADQTDEVIREGIRKAMGGTPGPVYIEYPSHIILEELDLPAPLVPERYRLVNQGADIDRVHEAAKLIREAKNPILLVGHGVHTSRIGAAVKQLADLMNCPVIQTSGGTSYIKGLEDRTFQYVFSKASIEAVTESDLVLALGTELGEPVHFGKWRYWQKNEAIRKWIYVEQDASAIGVNRPIDVPLVGDLRGVVPQLVAALKDTPRAPAPMLEAFMRDGQAELDELAAESLTKSDGTGDVAIHPARLAVEATQAFPKDGIMIRDGGAGVIFQWTYSQCKPHDVIWNQNFGHIGTGIPYATGAMLADQAATGISRPAMLLTSDSSFLFHIGELEVAARCKLPLVCVVGVDNAWGLEVGVYKRTFGQGTEETGTHWSKDVRFDKIGEGFGCHGEYVTRAEDIKPAIERAYASGKVGVVHVVIDPKANSEEMPKYAEFRTWYAEGTQ
>NZ_CP016453.1|WP_069064269.1|642176_642986_-|IclR-family-transcriptional-regulator
MNDPIRARSPSPVRKVAAAVKDSKAPAITRAAAILRLLGRSDRPLGVQAIAKELGLVPSTCLYVLRALAEEELVSFDADTKRYALEAGVLTLARHWLRRDPFNDLAQPLLDRLAQRFGLTMLGVQAVGLDHMIVVAMAQSGSGFQLSTQVGSRFPALISATGRCIAAFGDYPEAVLKARFDQLRWDDPPAFDDWMAQLRQTRAQGFAVDEGQYIAGVTVVSAPVWKGAGRPVHALVAIGIGAALGRDLGALQEALVEAAGALSGQLGGA
>NZ_CP016453.1|WP_069064270.1|643139_644705_+|AMP-binding-protein
MAKLTDYSSYADAQAHATSDAPWGLFDGDRDHLNIAHECITRHADGSDRAAVRIAHADGRDEILSFDTIAAGAARFAYWLDAEGVQPGERIAFMLEPSLPFYVCLFGAMQTGAISVPLFTLFGPDALRLRVDDCKPTILITNLEKADLARSMNGPRVVIADDGLLDEIEKYPATYTPKTRANDLAVFQYTSGTTRELPEAVKHSHRALVTLMFAALYGTGIRPGDEFFCPSSPAWGHGLWHGTLAPLGLGVTTGTFAGRFDPVRLMQALDDYQITNMSAAATHYRMMKNSGKAEEFAFHFKKLSYTGEPIDPATLDFIETYFKVPACSMYGTTEIGVVLVNYPGADDFTVKPGSLGKAVPGQKLQVQRPDGTPSAPGEIGELMLWRRDKWETTKDRAKIDEDGYFYHCGRADDVIISAGWTMSAVEIENTLLKHPVVLECAVIGVPDPQRGQVVKAFVIANVDGSDALVKELQTFTREKLAQHEFPRVVEFVTDLPKTPAGKVHRKILREREAAKAAELVN
>NZ_CP016453.1|WP_069064271.1|644722_645871_+|MaoC-family-dehydratase-N-terminal-domain-containing-protein
MATLAEAPTNKFPKITEEGLDDLRKRIGVKIENTVEPWNYEATRDAIRHYAHGIGDDNPLWCDPAYAEKTKYGAVVALPSFLFTTSRIISGYCGGLSGVHAMWAGADWTWHKPVLRNDTIRTEAYLKDLVEHNTKFAGRSFQQIYHVDFFNQSGDKVAEGDSWVFRTDRDEARERGTKYTEARGRVEQYTEEELAEFTRLYQEEEIRGSTPRYWEDVKVGDELPRMMKGPMTVTGFICYAQGWGGLYIRANKLANQMQQAHPGLGIRNRFNVPDCPERVHWDEAFALEVGAPGAYDYGPERCSWLTHHITNWIGDDGFLTRSKCQIRRHNPDGDAIYIDGSVIRKFEENGKKFVEIQQQATTHRGEVSAFGTSIAELPSKPA

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Crispr_ID: NZ_CP016453_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016453_2

628315-628813

Unclear

Consensus_repeat	Method
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CRT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	PILER-CR
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	CRISPRCasFinder

7 spacers

cas2

The CRISPR arrays of NZ_CP016453_2

>merge|NZ_CP016453|2|628315-628813|CRT,PILER-CR,CRISPRCasFinder
AACGGACCACAAAGTCATAAGACAAGCGGTTATAATTAGAGGATGCGGCTGATACTCTGAGCCAGAGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATGCGAATATCTGCGCGCTCCCCGGCCTTTATGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATACAACGCCCCGCCGGGCACGAAGCCAGACAGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATGCTGAAGATGATGACGACGACATTGATGACGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATAACGGATGTTTGATTGACAGTTCGGCGAGCGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATTGACGATCGGCGGCTGGGCGGGCGCTTTTTCGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAATACGCCGACCGAAGCACCGATGGTCATTGCGGTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT

>NZ_CP016453|2|2|628315-628813|CRT
AACGGACCACAAAGTCATAAGACAAGCGGTTATAAT	TAGAGGATGCGGCTGATACTCTGAGCCAGA
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCGAATATCTGCGCGCTCCCCGGCCTTTAT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	ACAACGCCCCGCCGGGCACGAAGCCAGACA
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCTGAAGATGATGACGACGACATTGATGAC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	AACGGATGTTTGATTGACAGTTCGGCGAGC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	TGACGATCGGCGGCTGGGCGGGCGCTTTTTC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	ACGCCGACCGAAGCACCGATGGTCATTGCG
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT

>NZ_CP016453|2|2|628381-628813|PILER-CR
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCGAATATCTGCGCGCTCCCCGGCCTTTAT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	ACAACGCCCCGCCGGGCACGAAGCCAGACA
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCTGAAGATGATGACGACGACATTGATGAC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	AACGGATGTTTGATTGACAGTTCGGCGAGC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	TGACGATCGGCGGCTGGGCGGGCGCTTTTTC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	ACGCCGACCGAAGCACCGATGGTCATTGCG
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT

>NZ_CP016453|2|2|628381-628813|CRISPRCasFinder
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCGAATATCTGCGCGCTCCCCGGCCTTTAT
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	ACAACGCCCCGCCGGGCACGAAGCCAGACA
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	GCTGAAGATGATGACGACGACATTGATGAC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	AACGGATGTTTGATTGACAGTTCGGCGAGC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	TGACGATCGGCGGCTGGGCGGGCGCTTTTTC
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT	ACGCCGACCGAAGCACCGATGGTCATTGCG
GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016453.1\|WP_069064272.1\|645985_646897_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187611
NZ_CP016453.1\|WP_069064264.1\|624849_625725_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|378484
NZ_CP016453.1\|WP_037480334.1\|628885_629191_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP016453.1\|WP_069064268.1\|637149_638934_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|223107
NZ_CP016453.1\|WP_069064495.1\|631953_632820_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP016453.1\|WP_069064496.1\|632831_633677_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP016453.1\|WP_069064258.1\|616030_617713_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP016453.1\|WP_069064266.1\|633846_635676_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP016453.1\|WP_083216996.1\|619340_620153_-\|DUF1206-domain-containing-protein	unknown	unknown	gnl\|CDD\|377695
NZ_CP016453.1\|WP_069064263.1\|621971_622787_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP016453.1\|WP_069064261.1\|620241_621012_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_CP016453.1\|WP_069064269.1\|642176_642986_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP016453.1\|WP_069064259.1\|617715_619224_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236461
NZ_CP016453.1\|WP_069064270.1\|643139_644705_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341276
NZ_CP016453.1\|WP_006966739.1\|627188_628130_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP016453.1\|WP_069064271.1\|644722_645871_+\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379194
NZ_CP016453.1\|WP_069064267.1\|635776_637153_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176891
NZ_CP016453.1\|WP_069064262.1\|621026_621956_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP016453.1\|WP_069064494.1\|622898_624785_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP016453.1\|WP_037480769.1\|626750_626954_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016453.1\|WP_069064272.1\|645985_646897_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	6.41314e-93
NZ_CP016453.1\|WP_069064264.1\|624849_625725_+\|DUF2520-domain-containing-protein	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	1.57557e-30
NZ_CP016453.1\|WP_083216996.1\|619340_620153_-\|DUF1206-domain-containing-protein	gnl\|CDD\|377695	pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.	1.73917e-13
NZ_CP016453.1\|WP_069064268.1\|637149_638934_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	2.58927e-101
NZ_CP016453.1\|WP_069064495.1\|631953_632820_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.45677e-27
NZ_CP016453.1\|WP_069064496.1\|632831_633677_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.19016e-58
NZ_CP016453.1\|WP_069064258.1\|616030_617713_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.74186e-109
NZ_CP016453.1\|WP_069064266.1\|633846_635676_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.11884e-59
NZ_CP016453.1\|WP_037480334.1\|628885_629191_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.21295e-22
NZ_CP016453.1\|WP_069064263.1\|621971_622787_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.45352e-31
NZ_CP016453.1\|WP_069064261.1\|620241_621012_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	4.24929e-83
NZ_CP016453.1\|WP_069064259.1\|617715_619224_-\|AAA-family-ATPase	gnl\|CDD\|236461	PRK09302, PRK09302, circadian clock protein KaiC; Reviewed.	2.19046e-72
NZ_CP016453.1\|WP_069064270.1\|643139_644705_+\|AMP-binding-protein	gnl\|CDD\|341276	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes.	3.49771e-111
NZ_CP016453.1\|WP_006966739.1\|627188_628130_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.57687e-20
NZ_CP016453.1\|WP_069064271.1\|644722_645871_+\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	4.70273e-14
NZ_CP016453.1\|WP_069064267.1\|635776_637153_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176891	cd08882, RHO_alpha_C_MupW-like, C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. MupW is part of the mupirocin biosynthetic gene cluster in Pseudomonas fluorescens, and may catalyze the oxidation of the 16-methyl group during biosynthesis of this polyketide antibiotic. Mupirocin is a mixture of pseudomonic acids which targets isoleucyl-tRNA synthase and is a strong inhibitor of Gram positive bacterial and mycoplasmal pathogens. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	2.07153e-55
NZ_CP016453.1\|WP_069064262.1\|621026_621956_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	3.38269e-30
NZ_CP016453.1\|WP_069064494.1\|622898_624785_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP016453.1\|WP_069064269.1\|642176_642986_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	5.05076e-44

>NZ_CP016453.1|WP_006966739.1|627188_628130_-|IS110-family-transposase
MSNSLPQTIGIDISKATLDCYVHPIGIERQFPNTTKGHKTLIAWAGQWEVERIAYEATGIYHRALEVALGHMPCVKLNPERARRFAQATGTLAKTDRIDARLLARMAVTLKPPVRPARSPQQNQLAELVNARDGLVRDRTALKNREKNLTVTLLKRQCSQRLEQIARHIAALDAEIAAVIAADEKLVRRHHILTSIAGLGTLTANQIIATMPELGSLDNKQAASLAGLAPVARQSGQWKGKSFIRGGRANVRQALYMPALVAARFNPNLKAKYQQLIAAGKPAKIAITAIMRKLIVTANALLRADRLWTTACA
>NZ_CP016453.1|WP_037480769.1|626750_626954_+|hypothetical-protein
MLRETGDPSTATALKRAQKWLATHQDKSGAVPAKSINKDRQPGTDAYLFMTDAATGLAGLAMQPKQP
>NZ_CP016453.1|WP_069064264.1|624849_625725_+|DUF2520-domain-containing-protein
MVSTSPYRRIGIIGTGRVASAIGCALAAQSNNPLLIWGRNPTKCAEAVGVLGRAQAAGDMAQITRDCDLIILAVADDALADIVAALAQAEATDRPRFIFHVSGRSGATILDPLRSATSMTAAIHPAMTFTGNPTNEVKHMVDARFAVTGSTEQANAAALQLVALLGGIMVPIEEAQRALYHAALCHGANHLVTLIAGACQALAAAGVAEPSALLGPLVRAALDVSLDHGMAGLSGPLLRGDDETIAKHLAALGEQCPTLLPPYKAMALATLDELDRHNSAPRSTVACRTLL
>NZ_CP016453.1|WP_069064494.1|622898_624785_+|molecular-chaperone-HtpG
MTTETATAPETHAFEADVSKLLRMMVHSVYSDRDVFLRELISNAADACEKLRYEGIAMPSLLGDDPQPRIRVLLDADQNRLTIEDNGIGMTAAEMGETLGTIARSGTKAFMERLAAEAGKEGSQLIGQFGVGFYSAFMVASQVEVFSRRAGSQDAASWTSDGQGTYTIAPVDLADAPTRGTRVVLHLMEDAKSYAERFTVERIIKAQSGHVPVPIMLFEKPDADGVDIADGAALWLKPKSEISEEDYADFYRSVAGQYDKPAHTVHYRAEGRYEYSVLTFIPETKPFDLFDPDRKGHIKLYVRRVFITDEAPILPRYLRFVRGLVDSADLPLNMSREMIQDSPVLGAIQKGVTGRLLGDLQKLADNDAEAYQRIWENFGPVLKEGLYEDFERREALLGLARFKSTTSGEGWRSLKDYVAQLKENQTAIYYATGSDLDRLFTSPQLEGFRARGIEVLLLPDQVDNFWTTMGVDYEGKPFKSVTQGGADLGLIPLVEGADKPTEQENAAVADFLAFAKTTLADAVSDVRASDRLTTSAVCLVAPESGMDRQLEKLLASAGQLPTAALPVLEINPRHALIQKLASSDDADGLKSDLAHLLLDQARIADGEQPTDARAFSDRLDRLMSRAVG
>NZ_CP016453.1|WP_069064263.1|621971_622787_+|transglutaminase-family-protein
MLIRCGYDIAFNTDAKTAMVALLSVHPSRHQDLRTPQRLMASPDIPLYQFEDGFGNVATRFAIPPGGVTLSCDFVIEDNGEPDVRAPDGPQIPVEDLPDAVMPFLLGSRYCETDRLMDVAWGNFAHYASARDRVDAIVDFVHNHIEFGYHYARSDKTAWNGYQERRGVCRDFAHLAVTLCRCMNIPARYCTGYLGDIGIPPVDAPMDFSAWFDVYIDGNWYTYDARHNRPRIGRILMARGRDATDVALTTAFGPANLVRFDVHTDEVQSIE
>NZ_CP016453.1|WP_069064262.1|621026_621956_+|transglutaminase-family-protein
MPLLTIRHSTIYHYQQPVSLGEHRIMMRPREAFDQRLLSARLDIDPAPSELRWLHDVFGNSVAIATFKARAAQLVVNSEATLDHAPLAQKQVDVEPYARLFPFTYSSEDMPDLLRSIEREYHDPERIVDNWARSFVSNHGNTSTIALLTEIATGIQREFTYVPRHEKGTQSPIETLKLRQGTCRDFAVLMIEAVRALGFAARFVSGYVYNPSRSEDVVGGGNTHAWVRIFLPGSGWVEFDPTNGIIGNRGLIRVAVARDPYQALPLSGTWFGPPGSFLNMDVSVDVLRADPSLFPSTNHGAINSRHIGA
>NZ_CP016453.1|WP_069064261.1|620241_621012_-|N-formylglutamate-amidohydrolase
MAGRTAENLLGPGDPLPFGLFNAEGGSPFLLIGDHAGAAIPGALGDMGLSAADRGRHIAIDIGVYGLGRALARRLDAPFLHQSYSRLVIDCNRDPAHAEAIPALSDGTVIGGNADLDMAEKAERVRAIHRPYHQAMADLIAARTAAGRETILLSLHSFTPVLNGDVRPWDIGILHWQGRTDFALSMLDQLQSIAGVVVGDNEPYAMDATDYTVPFHAFPNGLRYAEIEVRQDLIQDAGGQALWAERITSAAQGAIA
>NZ_CP016453.1|WP_083216996.1|619340_620153_-|DUF1206-domain-containing-protein
MTYSDRMTLFARIGFAARGLVYILIGWFALDVASTGGEVKDNQGALGSMVDAPLGHVLLAICALGFAGYAIWRLTEAAMDPENCSRTLKGKFKRVGYAMSGISHVILAVAAARLALRQTSAQEGSPGDASAESWSAWLLSQPGGVVLLVLVGLVLFAVAATQAIKAYKAEFRELDGDTPAPDYVRWIGRCGYAARALIFALIGWFIISAALNHDPDQAGGLGEALKQLRAQEEGTIILSVVAFGLGLFGVFSLIEARYRRMRVAKPDFLR
>NZ_CP016453.1|WP_069064259.1|617715_619224_-|AAA-family-ATPase
MTDLASEDRKVTISTGIADLDNILGGGLTANRAYLLEGTPGSGKTTIALQFLLEGARQGERGLYITLSETSAELKEVARSHNWVLDDIDLFELVSGEGLDPDAEQSILEPSEVELGETIQGVMECVDRIRPVRVVFDSLSEMRLLAQNSLRYRRQILALKQYFSQRHCTVLMLDDRSSDPNDLQLHSIAHGVITLEQAAQDYGTERRRLRVVKMRGVKYRGGYHDFVIETGGVAVFPRLVANEHHGQYVQQLVSTGLERMDQMLGGGISVGTNLLFNGPSGVGKTTTAVQFGLSAIARGEKAAYFLFDEGRPTMITRARAMGMDLQPHLDSGALTVTQIDPAEMSPGEFASWVRRAVEEDGVRFVVIDSLNAFLQAMPGEKYLVLQMHEMLSYLNQQGVITVLILGQHGIIGEVRSDVDLSYLSDTIILFRYFEAKGEMLKAVSVVKSRTTPHEATIREYRLGRNGITVGEPLKDFDGVLTGVPTYSGKTPLLAAEPAASET
>NZ_CP016453.1|WP_069064258.1|616030_617713_-|response-regulator
MEDRILVLALRGRDAAVMETLLAKQDYACTTCADARALSDELTRGAATAIITEESLAGADRSALDAWVAQQPPWSDFPFILLATRRAGHRPRHAMLVLERLGNVIVLERPIHSETLGSAVRSAMRVRRRQYEARERLAALQLAEERLTHLNANLETRIAERTSELSRANNMLMEEVAERERAQTALVQSQKMEAVGQLTGGIAHDFNNLLTVVSGNLEMIERRSDDERILRHARFAAEATDRAAKLTRQLLAFSRTQQLALAPLSLNALVEGMGDLLARTIGPRIDQRRVLADSQPWVMADVHQLELAVLNLAINARDAMPDGGILTIETDAGRSAPEGVRPGRYGVVRVRDNGVGIPRPILSKVFDPFYTTKPLGKGTGLGLSQVFGIARQSGGIAQIDSVQHEGTTVSIWLPLAEQPVVDTELVAQISPSDRVRAKLNILVVDDDEGVRRFVAEGLESFGYHITQAASGAEAVTMLDAALPDVMIVDFAMPGMTGIELAEDARRRAPDLPIIMVTGYAEEGVSADTSLITHIVRKPFKIDALVGVLDMTTGILASAPD
>NZ_CP016453.1|WP_037480334.1|628885_629191_-|CRISPR-associated-endonuclease-Cas2
MWIFVMFDLPVGTKEQARAATKFREFLLDEGFEKSQFSVYARFCNGKEQFETYMRRVEAKLPDNGDVHILSFTDRQYENIVRFSGQRRRRQRKNPDQLALF
>NZ_CP016453.1|WP_069064495.1|631953_632820_-|alpha/beta-hydrolase
MSAIERQTLRGADVDLAADVTGPVDGQPILFLHGSGQTRQSWGKALVEAGRHGFRALSMDLRGHGDSGWSPDGRYDLTVFADDLRAVLAQLDRPPVVVGASLGGIVGMIVAAADPAAIRALVLVDITATVDMEGANEVIAFMNAGSDGFASIEEAAAAVSAYLPHRDKPQSSRGLAKNLRQRGARWYWHWDPAFMTMGVDAKQEAEGPTVLETAARALTIPTLLIRGGRSRIVTEEGARAFLEMVPHADYVHIDGAHHMVAGDANDAFNDAVFRFADRQVEGSAQADG
>NZ_CP016453.1|WP_069064496.1|632831_633677_-|SDR-family-oxidoreductase
MAQQLMDFTGRTIIVTGAAGGGIGTATTKMLAQAGATVIAAGRTQAKFDAHIAPLIAQGLAIVPVIADVGTDEGVAKVMEAAVAAPGTLHGLANVAGGAAPQTWMRAERVTRADWRALFEQNLETMFFMSQAVARELRARGNPGAIVGVSSISGMNSAPYHIAYGTAKAAIVAATRTLATELALDNIRVNTVAPGMTITPGSGAYIDADVARDQAAIAMGRRARPEEQAGAIAFLLSDLSSYITGQTILVDGGLNLKWTHLGADNTSLFLKNEDFRAAIKA
>NZ_CP016453.1|WP_069064266.1|633846_635676_+|NAD(P)/FAD-dependent-oxidoreductase
MSCTPTRTPAPDTFDIPTLRAKYREERDKRLRGDGQAQYQPTTDDTTHSYDVDPHMAVTPRDPLVEDLDVLVLGGGFAGVLAGYHLTKQGVTDFRNIDHAGDFGGVWYWNRYPGIQCDNDAYCYLPLLEETGFMPSKKFADGAEIQAYIKQIAQRFGFHDRALFHTLVTALKWDDTLQRWHVETSRGDHFRARFVIMGCGVLNMPKLPGIEGIDRYQGKIFHTARWDYGYTGGSYKSPVLDKLADKRVAILGTGATAIQAVPHLARYAKQLYVIQRTPSTVDERPNPPTDPDWAESLQPGWQAERQANFHRAAMEFFLPGEQDLICDIWTEIARNLHAELEAEGWPELSPEEFMARREVVDYRVMERLRARVDDMVKDEATAASLKPWYRFLCKRPLSSNDFYAAFNQPNVKLIDVSDAKGLERMTETGFVSNGVDYTVDCMIFASGFEVTSDLKRRWGIDVVEGRNGLSIYDHWANGPKTLHGTMTHGFPNQFFIGYIQGGLNASVTEQFGRQAEHIAHIIQATMAKGAASVETTADAQDAYVQHFHDVEYDTSAFQIECTPSYFTNEGQVKAPWALFRSYGPGWGAFQTLLQDWRARGDLAGMELRS
>NZ_CP016453.1|WP_069064267.1|635776_637153_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MNSPTTISVDDLAKPLTYPVEAFLSRDYALAEKENLWPKVWQVAARFEELPDVGDWLTYDICDDSIIVIRVAPDRLKAYHNVCPHRGRQLVDVPEGAHSAKGNKRRNFICGFHGWTFDIEGNNSYILDPQDWQGALTPDCTHLSEVKVDLWGGWIWIHMDLDAEPVTEFLGDAGRILSYFEMDKMRYKWRKWVVYPSNWKTALEAFMEPYHVAGTHSQLLAYGDYYAYSAAYGLHGVSGFDQRDPAFAMSQSSSVTRAGKGDDPRRSTYELIRENYETLNYAASTQTLVDAASRLVDELPEGTAAADVIAHWLKSARADDAARGVFWPDIPPDVMAEAGLAWHVFPNMSVLQGITFALCYRARPFGDDPNMCIFESYAIERFPEGQEPATEWEHAEPTAEGWGAVLAQDFSNMKWVQKGMKSRGFRGPLPNPHQERKITNFHRNLAAYMGTGAPRLLK
>NZ_CP016453.1|WP_069064268.1|637149_638934_+|thiamine-pyrophosphate-binding-protein
MSYDDPKPATAATASGKSGTPVYKRVLDLFEAEGINTLFGIPDPNFVHMFLEAERRGWTVVAPHHEAAAGFMAEAASRITGKPAVAVGTLGPGIANMAPAIQCALVEHSPVIFLSGQRARVTEQRVRRGRIQFVKQMPLFENSVKYAASIEYADQTDEVIREGIRKAMGGTPGPVYIEYPSHIILEELDLPAPLVPERYRLVNQGADIDRVHEAAKLIREAKNPILLVGHGVHTSRIGAAVKQLADLMNCPVIQTSGGTSYIKGLEDRTFQYVFSKASIEAVTESDLVLALGTELGEPVHFGKWRYWQKNEAIRKWIYVEQDASAIGVNRPIDVPLVGDLRGVVPQLVAALKDTPRAPAPMLEAFMRDGQAELDELAAESLTKSDGTGDVAIHPARLAVEATQAFPKDGIMIRDGGAGVIFQWTYSQCKPHDVIWNQNFGHIGTGIPYATGAMLADQAATGISRPAMLLTSDSSFLFHIGELEVAARCKLPLVCVVGVDNAWGLEVGVYKRTFGQGTEETGTHWSKDVRFDKIGEGFGCHGEYVTRAEDIKPAIERAYASGKVGVVHVVIDPKANSEEMPKYAEFRTWYAEGTQ
>NZ_CP016453.1|WP_069064269.1|642176_642986_-|IclR-family-transcriptional-regulator
MNDPIRARSPSPVRKVAAAVKDSKAPAITRAAAILRLLGRSDRPLGVQAIAKELGLVPSTCLYVLRALAEEELVSFDADTKRYALEAGVLTLARHWLRRDPFNDLAQPLLDRLAQRFGLTMLGVQAVGLDHMIVVAMAQSGSGFQLSTQVGSRFPALISATGRCIAAFGDYPEAVLKARFDQLRWDDPPAFDDWMAQLRQTRAQGFAVDEGQYIAGVTVVSAPVWKGAGRPVHALVAIGIGAALGRDLGALQEALVEAAGALSGQLGGA
>NZ_CP016453.1|WP_069064270.1|643139_644705_+|AMP-binding-protein
MAKLTDYSSYADAQAHATSDAPWGLFDGDRDHLNIAHECITRHADGSDRAAVRIAHADGRDEILSFDTIAAGAARFAYWLDAEGVQPGERIAFMLEPSLPFYVCLFGAMQTGAISVPLFTLFGPDALRLRVDDCKPTILITNLEKADLARSMNGPRVVIADDGLLDEIEKYPATYTPKTRANDLAVFQYTSGTTRELPEAVKHSHRALVTLMFAALYGTGIRPGDEFFCPSSPAWGHGLWHGTLAPLGLGVTTGTFAGRFDPVRLMQALDDYQITNMSAAATHYRMMKNSGKAEEFAFHFKKLSYTGEPIDPATLDFIETYFKVPACSMYGTTEIGVVLVNYPGADDFTVKPGSLGKAVPGQKLQVQRPDGTPSAPGEIGELMLWRRDKWETTKDRAKIDEDGYFYHCGRADDVIISAGWTMSAVEIENTLLKHPVVLECAVIGVPDPQRGQVVKAFVIANVDGSDALVKELQTFTREKLAQHEFPRVVEFVTDLPKTPAGKVHRKILREREAAKAAELVN
>NZ_CP016453.1|WP_069064271.1|644722_645871_+|MaoC-family-dehydratase-N-terminal-domain-containing-protein
MATLAEAPTNKFPKITEEGLDDLRKRIGVKIENTVEPWNYEATRDAIRHYAHGIGDDNPLWCDPAYAEKTKYGAVVALPSFLFTTSRIISGYCGGLSGVHAMWAGADWTWHKPVLRNDTIRTEAYLKDLVEHNTKFAGRSFQQIYHVDFFNQSGDKVAEGDSWVFRTDRDEARERGTKYTEARGRVEQYTEEELAEFTRLYQEEEIRGSTPRYWEDVKVGDELPRMMKGPMTVTGFICYAQGWGGLYIRANKLANQMQQAHPGLGIRNRFNVPDCPERVHWDEAFALEVGAPGAYDYGPERCSWLTHHITNWIGDDGFLTRSKCQIRRHNPDGDAIYIDGSVIRKFEENGKKFVEIQQQATTHRGEVSAFGTSIAELPSKPA
>NZ_CP016453.1|WP_069064272.1|645985_646897_+|SDR-family-NAD(P)-dependent-oxidoreductase
MDEMRFDGRVAVITGAGRGLGRAYALLLASRGAKIIVNDPGVSMQGEGTDAAPAQALVEEIRAAGGDAIASTDSVATPQGGQAIIDTAITHYGRIDILIHNAGIVRRGSLNDLSYADFETVLDVHMRGAFHVVRAAFPHMTAANYGRIVLTGSLNGLYGNAGVVNYSMAKAAMTGLSNVAAIEGAAHNIKSNIILPGAVTRMADGLDTSAYPPMDPDLVAPTVGYLAHEECAVTGEMLIAMAGRVARAYTMETKGAFRPDWTIEQIAENLDTIRATDNALHFAPVPDGHMDHLRYCFAMARAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016453_1	1.1\|626990\|29\|NZ_CP016453\|CRISPRCasFinder,CRT	626990-627018	29	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	626990-627018	0	1.0
NZ_CP016453_1	1.2\|627055\|30\|NZ_CP016453\|CRISPRCasFinder,CRT	627055-627084	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	627055-627084	0	1.0
NZ_CP016453_1	1.3\|627121\|30\|NZ_CP016453\|CRISPRCasFinder,CRT	627121-627150	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	627121-627150	0	1.0
NZ_CP016453_1	1.4\|626997\|28\|NZ_CP016453\|PILER-CR	626997-627024	28	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	626991-627018	0	1.0
NZ_CP016453_1	1.5\|627062\|29\|NZ_CP016453\|PILER-CR	627062-627090	29	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	627056-627084	0	1.0
NZ_CP016453_2	2.1\|628351\|30\|NZ_CP016453\|CRT	628351-628380	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628351-628380	0	1.0
NZ_CP016453_2	2.2\|628417\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628417-628446	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628417-628446	0	1.0
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628483-628512	0	1.0
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628549-628578	0	1.0
NZ_CP016453_2	2.5\|628615\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628615-628644	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628615-628644	0	1.0
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628681-628711	0	1.0
NZ_CP016453_2	2.7\|628748\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628748-628777	30	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	628748-628777	0	1.0
NZ_CP016453_2	2.2\|628417\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628417-628446	30	NZ_CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	100576-100605	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	390035-390064	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	235415-235444	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP047090	Salmonella sp. S13 plasmid pS13-1, complete sequence	56422-56451	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP035313	Escherichia coli strain D72 plasmid pD72-mcr1, complete sequence	95906-95935	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP019054	Escherichia coli strain CRE1540 plasmid p1540-3, complete sequence	95865-95894	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	17029-17058	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_LT985263	Escherichia coli strain 511 plasmid RCS54_p, complete sequence	65425-65454	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_MG196293	Escherichia coli strain SDX5C133 plasmid pHNSD133T1, complete sequence	74705-74734	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_KX518745	Escherichia coli strain HYEC7 plasmid pHYEC7-mcr1, complete sequence	37642-37671	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	MN232192	Escherichia coli plasmid pGD27-62, complete sequence	66968-66997	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	LC511659	Escherichia coli 2017.15.03CC plasmid p2017.15.03CC DNA, complete genome	37578-37607	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	MF510496	Klebsiella pneumoniae strain SCKP-LL83 plasmid pMCR_SCKP-LL83, complete sequence	71999-72028	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP052881	Escherichia coli strain C21 plasmid pC21-4, complete sequence	38947-38976	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP041922	Escherichia coli strain Ec40743 plasmid unnamed3, complete sequence	33748-33777	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_MK419152	Escherichia coli strain D72C plasmid pD72C, complete sequence	47736-47765	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_MH781719	Klebsiella pneumoniae strain SCKLB684 plasmid pSCKLB684-mcr, complete sequence	37951-37980	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_MK256965	Escherichia coli strain R15 plasmid pR15_MCR-1, complete sequence	37688-37717	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_MG825379	Escherichia coli strain 1108 plasmid p1108-IncY, complete sequence	41115-41144	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_MG288678	Klebsiella pneumoniae strain F160070 plasmid p160070-MCR, complete sequence	41821-41850	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	MK016664	Synechococcus phage S-B68, complete genome	110461-110490	6	0.8
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	196061-196090	6	0.8
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	NZ_CP030129	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence	52468-52497	7	0.767
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	MK494113	Mycobacterium phage Refuge, complete genome	17489-17518	7	0.767
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	MN813686	Mycobacterium phage BirdsNest, complete genome	57729-57758	7	0.767
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	MH513984	Mycobacterium phage Steamy, complete genome	15719-15748	7	0.767
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1519532-1519561	7	0.767
NZ_CP016453_2	2.4\|628549\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628549-628578	30	MT843275	Serratia phage vB_SspM_BZS1, complete genome	5452-5481	7	0.767
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	254611-254641	7	0.774
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1446133-1446163	7	0.774
NZ_CP016453_1	1.3\|627121\|30\|NZ_CP016453\|CRISPRCasFinder,CRT	627121-627150	30	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	200056-200085	8	0.733
NZ_CP016453_1	1.3\|627121\|30\|NZ_CP016453\|CRISPRCasFinder,CRT	627121-627150	30	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	195016-195045	8	0.733
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	MH588547	Caulobacter phage CcrSC, complete genome	202569-202598	8	0.733
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	NZ_CP021368	Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence	2651-2680	9	0.7
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	NZ_CP021368	Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence	159146-159175	9	0.7
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	NZ_CP021364	Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence	21733-21762	9	0.7
NZ_CP016453_2	2.3\|628483\|30\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628483-628512	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	774586-774615	9	0.7
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NZ_CP006370	Aureimonas sp. AU20 plasmid pAU20c, complete sequence	189139-189169	9	0.71
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NC_016655	Rhodococcus phage REQ1, complete genome	50065-50095	9	0.71
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NZ_CP014310	Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence	141130-141160	9	0.71
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	572152-572182	9	0.71
NZ_CP016453_2	2.6\|628681\|31\|NZ_CP016453\|CRT,PILER-CR,CRISPRCasFinder	628681-628711	31	NZ_LR134447	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence	12813-12843	10	0.677

1. spacer 1.1|626990|29|NZ_CP016453|CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcaatcgcggcgtcaatggtattcgaaga	CRISPR spacer
gcaatcgcggcgtcaatggtattcgaaga	Protospacer
*****************************

2. spacer 1.2|627055|30|NZ_CP016453|CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgcgcttcacgcacgccaactatgccct	CRISPR spacer
ctcgcgcttcacgcacgccaactatgccct	Protospacer
******************************

3. spacer 1.3|627121|30|NZ_CP016453|CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

caaagcgtcgatcggcggtggatctgcaat	CRISPR spacer
caaagcgtcgatcggcggtggatctgcaat	Protospacer
******************************

4. spacer 1.4|626997|28|NZ_CP016453|PILER-CR matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

caatcgcggcgtcaatggtattcgaaga	CRISPR spacer
caatcgcggcgtcaatggtattcgaaga	Protospacer
****************************

5. spacer 1.5|627062|29|NZ_CP016453|PILER-CR matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcgcttcacgcacgccaactatgccct	CRISPR spacer
tcgcgcttcacgcacgccaactatgccct	Protospacer
*****************************

6. spacer 2.1|628351|30|NZ_CP016453|CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

tagaggatgcggctgatactctgagccaga	CRISPR spacer
tagaggatgcggctgatactctgagccaga	Protospacer
******************************

7. spacer 2.2|628417|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaatatctgcgcgctccccggcctttat	CRISPR spacer
gcgaatatctgcgcgctccccggcctttat	Protospacer
******************************

8. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
acaacgccccgccgggcacgaagccagaca	Protospacer
******************************

9. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
gctgaagatgatgacgacgacattgatgac	Protospacer
******************************

10. spacer 2.5|628615|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

aacggatgtttgattgacagttcggcgagc	CRISPR spacer
aacggatgtttgattgacagttcggcgagc	Protospacer
******************************

11. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
tgacgatcggcggctgggcgggcgctttttc	Protospacer
*******************************

12. spacer 2.7|628748|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 0, identity: 1.0

acgccgaccgaagcaccgatggtcattgcg	CRISPR spacer
acgccgaccgaagcaccgatggtcattgcg	Protospacer
******************************

13. spacer 2.2|628417|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035420 (Leisingera sp. NJS204 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

gcgaatatctgcgcgctccccggcctttat	CRISPR spacer
gtggacatctgcgcgctggccggcctttac	Protospacer
*.*.*.***********  **********.

14. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
gttgaagacgatggcgacgacattgatctt	Protospacer
*.******.****.*************  .

15. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
gttgaagacgatggcgacgacattgatcct	Protospacer
*.******.****.*************  .

16. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047090 (Salmonella sp. S13 plasmid pS13-1, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

17. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035313 (Escherichia coli strain D72 plasmid pD72-mcr1, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

18. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019054 (Escherichia coli strain CRE1540 plasmid p1540-3, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

19. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

20. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985263 (Escherichia coli strain 511 plasmid RCS54_p, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

21. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG196293 (Escherichia coli strain SDX5C133 plasmid pHNSD133T1, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

22. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KX518745 (Escherichia coli strain HYEC7 plasmid pHYEC7-mcr1, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

23. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MN232192 (Escherichia coli plasmid pGD27-62, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

24. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to LC511659 (Escherichia coli 2017.15.03CC plasmid p2017.15.03CC DNA, complete genome) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

25. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MF510496 (Klebsiella pneumoniae strain SCKP-LL83 plasmid pMCR_SCKP-LL83, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

26. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP052881 (Escherichia coli strain C21 plasmid pC21-4, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

27. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041922 (Escherichia coli strain Ec40743 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

28. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK419152 (Escherichia coli strain D72C plasmid pD72C, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

29. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH781719 (Klebsiella pneumoniae strain SCKLB684 plasmid pSCKLB684-mcr, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

30. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK256965 (Escherichia coli strain R15 plasmid pR15_MCR-1, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

31. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG825379 (Escherichia coli strain 1108 plasmid p1108-IncY, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

32. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG288678 (Klebsiella pneumoniae strain F160070 plasmid p160070-MCR, complete sequence) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
ggtggcgatgatgacgacgacgatgatgat	Protospacer
* **. ***************. ******.

33. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MK016664 (Synechococcus phage S-B68, complete genome) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
gttgtactggatgccgacgacattgatgac	Protospacer
*.** *   **** ****************

34. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 6, identity: 0.8

gctgaagatgatgacgacgacat--tgatgac	CRISPR spacer
gatgaagacgatgacgacgacatggcgctg--	Protospacer
* ******.**************  .* **

35. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030129 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
agaacgccccgccgggcacgaagtacacct	Protospacer
* *********************.  . *

36. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MK494113 (Mycobacterium phage Refuge, complete genome) position: , mismatch: 7, identity: 0.767

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
acaccgcccctccgggcacgaaggctccga	Protospacer
*** ****** ************ *    *

37. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MN813686 (Mycobacterium phage BirdsNest, complete genome) position: , mismatch: 7, identity: 0.767

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
agcgccgcccggcgcgcacgaagccagaca	Protospacer
*  .*  **** ** ***************

38. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MH513984 (Mycobacterium phage Steamy, complete genome) position: , mismatch: 7, identity: 0.767

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
acaccgcccctccgggcacgaaggctccga	Protospacer
*** ****** ************ *    *

39. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.767

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
catacagatgatgacgacgccatagatgag	Protospacer
  *. ************** *** *****

40. spacer 2.4|628549|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 7, identity: 0.767

gctgaagatgatgacgacgacattgatgac	CRISPR spacer
tctgaagatgaggacgacgacaaagaaaaa	Protospacer
 ********** **********  ** .*

41. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.774

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
tgacgatcgccggctggccgggcgcgccgcc	Protospacer
********* ******* ******* .. .*

42. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 7, identity: 0.774

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
tctcgaccggcggctgggcgggcccttcggc	Protospacer
*  ***.**************** ***.  *

43. spacer 1.3|627121|30|NZ_CP016453|CRISPRCasFinder,CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 8, identity: 0.733

caaagcgtcgatcggcggtggatctgcaat	CRISPR spacer
cagcacgtcgatcggcggcggatctgtctc	Protospacer
**. .*************.*******.  .

44. spacer 1.3|627121|30|NZ_CP016453|CRISPRCasFinder,CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 8, identity: 0.733

caaagcgtcgatcggcggtggatctgcaat	CRISPR spacer
cagcacgtcgatcggcggcggatctgtctc	Protospacer
**. .*************.*******.  .

45. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 8, identity: 0.733

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
cgaacgcgccgccgggctcgaagccgccaa	Protospacer
  ***** ********* *******.   *

46. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021368 (Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence) position: , mismatch: 9, identity: 0.7

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
gggacgcgccgccgggcacgaagccttcgg	Protospacer
. .**** *****************    .

47. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021368 (Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence) position: , mismatch: 9, identity: 0.7

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
gggacgcgccgccgggcacgaagccttcgg	Protospacer
. .**** *****************    .

48. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021364 (Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence) position: , mismatch: 9, identity: 0.7

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
gggacgcgccgccgggcacgaagccttcgg	Protospacer
. .**** *****************    .

49. spacer 2.3|628483|30|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

acaacgccccgccgggcacgaagccagaca	CRISPR spacer
tgatcgccccgcccggcacgaagccgtcgg	Protospacer
  * ********* ***********.   .

50. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006370 (Aureimonas sp. AU20 plasmid pAU20c, complete sequence) position: , mismatch: 9, identity: 0.71

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
tggcgatcggcggcggggcgggcggcagggt	Protospacer
**.*********** ********* .    .

51. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NC_016655 (Rhodococcus phage REQ1, complete genome) position: , mismatch: 9, identity: 0.71

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
tgacgatcggcagcggggcgggcggcagcgg	Protospacer
***********.** ********* .  .

52. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
cgacgctcggcggctgggtgggcgtatgcgg	Protospacer
.**** ************.*****. * .

53. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.71

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
ccacgatcgagggctgggcgggcgcgccctg	Protospacer
. *******. ************** ...*

54. spacer 2.6|628681|31|NZ_CP016453|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR134447 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence) position: , mismatch: 10, identity: 0.677

tgacgatcggcggctgggcgggcgctttttc	CRISPR spacer
ccacgatcgacggctgagcgggcgcgccggg	Protospacer
. *******.******.******** ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP016454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5600

Burkholderia_phage(33.33%)

transposase,integrase

attL 2328:2340|attR 6077:6089

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048575154.1\|475_1813_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_048575153.1\|1890_2487_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.5e-27	36.8
2328:2340	attL	NA	NA	NA	NA
WP_053085608.1\|2635_4117_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	5.2e-19	27.2
WP_083217027.1\|4116_4749_+	ATP-binding protein	NA	NA	NA	NA
WP_063142326.1\|4832_5600_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.5e-43	40.0
6077:6089	attR	NA	NA	NA	NA

DBSCAN-SWA_2

26808 : 30515

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037555775.1\|26808_29823_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	7.1e-209	40.3
WP_011950653.1\|29954_30515_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.5e-29	45.4

DBSCAN-SWA_3

35592 : 38699

Dinoroseobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011950391.1\|35592_36222_+	transcription elongation protein SprT	A0A1V0DYF5	Dinoroseobacter_phage	5.4e-42	49.5
WP_011950392.1\|36304_36958_+	AAA family ATPase	D4HTX7	Vibrio_phage	1.7e-19	31.3
WP_011950393.1\|36954_37269_+	hypothetical protein	NA	NA	NA	NA
WP_006953933.1\|37832_38699_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	6.7e-27	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP016456

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016456_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016456_1

1257368-1257472

Orphan

Consensus_repeat	Method
ATTGTGTAGACGCTTTGTGTAGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016456_1

>merge|NZ_CP016456|1|1257368-1257472|CRISPRCasFinder
ATTGTGTAGACGCTTTGTGTAGACGCCATTTCGCCGATTTTTCGTTGGATTCCGTAGAGTTGATGCGGTTATCCCGGCATCATTGTGTAGACGCTTTGTGTAGAC

>NZ_CP016456|1|1|1257368-1257472|CRISPRCasFinder
ATTGTGTAGACGCTTTGTGTAGAC	GCCATTTCGCCGATTTTTCGTTGGATTCCGTAGAGTTGATGCGGTTATCCCGGCATC
ATTGTGTAGACGCTTTGTGTAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016456.1\|WP_069065498.1\|1258596_1259553_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP016456.1\|WP_069065495.1\|1251147_1251690_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP016456.1\|WP_069063898.1\|1251852_1252182_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP016456.1\|WP_069065502.1\|1270615_1271356_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
NZ_CP016456.1\|WP_069065504.1\|1272214_1272616_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|377602
NZ_CP016456.1\|WP_069065497.1\|1257961_1258600_+\|aldehyde-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|236910
NZ_CP016456.1\|WP_069065494.1\|1250669_1250927_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016456.1\|WP_069065501.1\|1269583_1270261_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP016456.1\|WP_171899224.1\|1248969_1249584_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016456.1\|WP_069065503.1\|1271689_1271875_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|132023
NZ_CP016456.1\|WP_069064441.1\|1252585_1254199_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP016456.1\|WP_069065500.1\|1262000_1269518_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP016456.1\|WP_069063899.1\|1252178_1252526_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP016456.1\|WP_069065499.1\|1259549_1261757_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP016456.1\|WP_069065492.1\|1248424_1248916_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016456.1\|WP_037476696.1\|1270264_1270501_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP016456.1\|WP_150125774.1\|1255963_1257316_-\|phage-integrase-SAM-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|271184
NZ_CP016456.1\|WP_150125770.1\|1250133_1250358_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016456.1\|WP_150125775.1\|1257698_1257932_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016456.1\|WP_069066905.1\|1254676_1255810_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718

Protein	Function_ID	Function_description	E-value
NZ_CP016456.1\|WP_069065498.1\|1258596_1259553_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	8.09346e-75
NZ_CP016456.1\|WP_069065495.1\|1251147_1251690_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	6.70928e-52
NZ_CP016456.1\|WP_069063898.1\|1251852_1252182_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	4.28538e-10
NZ_CP016456.1\|WP_069065502.1\|1270615_1271356_+\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	1.00839e-67
NZ_CP016456.1\|WP_069065504.1\|1272214_1272616_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|377602	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like. GGACT, gamma-glutamylamine cyclotransferase, is a ubiquitous enzyme found in bacteria, plants, and metazoans from Dictyostelium through to humans. It converts gamma-glutamylamines to free amines and 5-oxoproline.	3.42236e-22
NZ_CP016456.1\|WP_069065497.1\|1257961_1258600_+\|aldehyde-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|236910	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional.	9.50359e-114
NZ_CP016456.1\|WP_069063899.1\|1252178_1252526_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	8.34524e-51
NZ_CP016456.1\|WP_069065503.1\|1271689_1271875_-\|PspC-domain-containing-protein	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	6.93417e-17
NZ_CP016456.1\|WP_069064441.1\|1252585_1254199_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	2.78255e-101
NZ_CP016456.1\|WP_069065500.1\|1262000_1269518_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.08669e-22
NZ_CP016456.1\|WP_069065499.1\|1259549_1261757_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP016456.1\|WP_069065501.1\|1269583_1270261_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	7.74925e-37
NZ_CP016456.1\|WP_150125774.1\|1255963_1257316_-\|phage-integrase-SAM-like-domain-containing-protein	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.07992e-57
NZ_CP016456.1\|WP_037476696.1\|1270264_1270501_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	1.26429e-19
NZ_CP016456.1\|WP_069066905.1\|1254676_1255810_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	7.93448e-55

>NZ_CP016456.1|WP_150125774.1|1255963_1257316_-|phage-integrase-SAM-like-domain-containing-protein
MPIDLLVALGRREIWRSLDTDSYATALRRVHRIAADVEAYFEEARNTLGHDVDTVLLTAGERGVSKCQPIAPENPILHSNNPAQPVARTITEVYDRYLADPRHNWSKRTAIAHATTRRWVLEAFGTEVLLNEITREGCRDFVELLRNMPKHADKRFSDMSLRDAVAAAQARGEQRVINTANVNAYLNRFGGVMNWAINEGYIDRNPLKGLKLPDPVRKRDKRHPFSTEQLRRIFGAPLFTGCKDDENGYAVPGDRRPRRARFWVPLIGLFHGLRMNEICQLEVSDIQKIDGLMCFRIASGVSDTGQMKRVKTAASERLVPIHNELINFGFLAFAESQRLCGESCLFPELPLGHLGYRSTSLSKWFSRFLVSADATAPLTCFHSFRHCFRDALREAKVDRDLALILGGWTTDGRGTNVADHYGSGYKVTALAEALNAVRFPTLDLSHLHAS
>NZ_CP016456.1|WP_069066905.1|1254676_1255810_-|Fic-family-protein
MKFENFRAGKWQSRYRYKSFEPVPINVEWTWEDAAINTLLEEANRALGELNAFSLIVPDIDLFIQMHIVKEAQTSSRIEGTQTGIDEALLPEDQIQPEKRDDWHEVRNYIAAVNAATAELDRLPLSNRLLRDTHAILMQGVRGENKGPGEFRVSQNWIGGSSLTDAVFIPPHQDGVADLMSDLEKFWHNEDVQVPHLIRVAISHYQFETIHPFQDGNGRIGRLLIPLYLISSGLLAKPSLYLSDFFERNRASYYDALMRVRMSNDIIHWVRFFLRGVALTAAKGRDVFRQILALRTEVESAILGLGKRTPNARETLNLLYRQPIVSAGEIERAIGVSTPTANALIRDFEKLGILKEITGQIRGRVYSFDRYLGLFLS
>NZ_CP016456.1|WP_069064441.1|1252585_1254199_+|IS66-family-transposase
MGDAAQAEIHSLRAQLAAAQAVAAEVARIKAINADLEARNALLELQNEKMRRTLFGQRSERTRHLLDQMELTFEECETAASEDELLAALAAAKTNVAPFERKRPARKPLPEHLPRERVVIAAPDACPCCGSDRLCKLGEDITETLEVVPRQWKVVQTVREKFSCRDCEKITQPPAPFHVTPRGLFGPSFLAMLLFEKFGAHQPLNRQRDRYAWEGVDLSLSTLADQVGTCTAALMPLYLLIEAHVLAAERLHGDDTTVPVLAKTKTDTGRIWTYVRDDRPFGGPAPPAAIFHYSRDRRGEHPVGHLRGWRGILQADAYAGYNALFHGDRLPAPLTRALCWSHARRYFFELADIAAQLKKRRKKAVISPLAVEAVRRIDVIFDIERAINGRPVQERHTLRQELSAPLVADMEEWMRDNRSKLSKNSDVAEAMDYMLKAWPAFTAFLDDGRICLTNNAAERALRGIALGRKSWLFAGSDRGGQRTAFMLSLIGTAKLNDIDPQAWLADVLSRIADIPQNRLQELLPWNWRAAEYQREAA
>NZ_CP016456.1|WP_069063899.1|1252178_1252526_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIPVPSGVRIWIATGHTDMRKGMRSLALQIQQSFRRDPHAGDLYVFRGRRGDLCKILWHDGIGMSLYAKRLERGKYIWPSAVDGVIAISASQLACMLEAIDWRNPQATWRPTLAG
>NZ_CP016456.1|WP_069063898.1|1251852_1252182_+|transposase
MSQITVISGPERRRVWTDQQKRELVAAVSAPGANVAEIARRADLRPNQIYRWRRQMGQAAQSFAEVQVQPDPAPVSGSSIIVEFERAIVRIPAGASPGLVSAVLRSIKP
>NZ_CP016456.1|WP_069065495.1|1251147_1251690_+|recombinase-family-protein
MIIGYARVSSTSQSLDIQHEALAAAGAEKVFSEKVSGRSTTDREQLALAISFAREGDTLIVTRLDRLARSVADLHRIIETLTAKAVSFRCLNQPGVDTDTSTGRLMLAMLGAVAAFENDIRRERQMEGVRKAQAAGKYRGRPASIDPTKIKELKAGGMGAAAIAKTMGIGRASVYRALAA
>NZ_CP016456.1|WP_069065494.1|1250669_1250927_-|hypothetical-protein
MEHDLHDLRMGDLVLREMDNRGQTERHIGEVLSIRARIQYLDIGYQWREWWDVTTASLHPFRPMSKPNYRLRKAKVDQIDRLRLR
>NZ_CP016456.1|WP_150125770.1|1250133_1250358_+|hypothetical-protein
MVNWHSGHGLDHLRQFSTMTEVTMHRMTDIPVRDFDHRSPSTMSADDIDQRSRRIMSVTMPTAQEWSLVMMLWG
>NZ_CP016456.1|WP_171899224.1|1248969_1249584_-|hypothetical-protein
MNNYNQSQNTQDAYNGKHTDSMFDNTLRDEEMEHIDLDEARSIMFYGSNSYDRLPTLIDISSQMNPEEWFSVLGEIWEVCDNVSYHVPDLCSLTPFLQLVRTPLAWRDHMMTTNERVALADLPDRVTIYRGCYKCNMDGMSWSLDQQVAAGFPSMNRYRSKGQPLLIKATIARDRILAFKNGRQEAEIIAWLPTVEAINCLRKR
>NZ_CP016456.1|WP_069065492.1|1248424_1248916_+|hypothetical-protein
MVAIKGARPFTEAFTSWFAAAGLHELVAVEPCVDRDTVDISFLIGGRALQGYVHPSGISIAAMLGKECWDFLFDEDVVPVNDGAAWFCSLCEPNDCRLFPSIEALWVDHLFDPLRRWIDEQLRPATALEYHRVDGATWMRLTKEPKKASVTATSLIALTAMRT
>NZ_CP016456.1|WP_150125775.1|1257698_1257932_+|hypothetical-protein
MKFLAASAEKLGFPPLLPRSAPSAAPRTQRKNVKPLSDSLSGYRAGPAALAIGALALPRLVDHISCIGRDHLLPPFV
>NZ_CP016456.1|WP_069065497.1|1257961_1258600_+|aldehyde-dehydrogenase-iron-sulfur-subunit
MPSDQITRRGMLRGGTTIAAATPFLSSAQAAQPAAASSREGIPMIPVELTVNGREAHLQLDPRTSLLDALREHLHLTGTKKGCDHGQCGACTVIVEGRRINSCLTLAVMHDGEAITTIEGLGTPDKLHPMQRAFITHDGYQCGYCTPGQICSAVAVLEEIEAGIPSHVTDDLDKVALTDAELRERMSGNICRCAAYPNIIAAMNDVAGGAKA
>NZ_CP016456.1|WP_069065498.1|1258596_1259553_+|xanthine-dehydrogenase-family-protein-subunit-M
MKPFTYSRATSAQEAAKMAASTQGARFIAGGTNLLDLMKLQIETPTHLIDVNPLKLDQIEKTADGGLRIGALVRNTDLAADKVVRRDYGVLSRALLSGASGQLRNKATTAGNLLQRTRCPYFYDTRMPCNKRKPGSGCGALQGMSRNLAILGVSDACIAQHPSDMAVAMRLLDATVDTVGADGAARSIPIADFHLLPGDTPHVETALKAGEIITSVTLPKPIGGTHVYRKVRDRSSYAFALVSVAAVFGKNGASRFAFGGIGAKPWRTVDADAAAGSGAKAVAEAALAGARTTHHNDFKKKLVEQTLTSLYRQKEARA
>NZ_CP016456.1|WP_069065499.1|1259549_1261757_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MKFDTPAGLNPIDKGRVVGKAHDRIDGAAKVTGAAPYAYERHDAAPNAAYGWMIGSGIAKGRIAAMDLRAAEAAPGVLGIVTHANAGKLGKGSMNTAPLLGGPQIDHYDQAVALVIADTFENARDAAKLVRIDYTSEGGKFDLTAERANAVKPPEGGFGGSPDTAVGDFDGAFAKAAVKVDQNYSTPDHSHAMLEPHASTAAWNGDKLTLWTSNQMIAWTVGDVAKTLGIPKANVRLVSPYIGGGFGAKLFLRADALLAALGARQVGRPVKVALARHQIPNNTTHRPATIQRIRIGADKDGVIDAIGHEVWSGDLPGGGPETAAQQTRLLYRGANRMTAHRLATLNLPEGNAMRAPGEAVGLLALEVAMDELAEACGVDPVELRIRNDVQYDPEAGTQRPFSSRKLVECMRAGAERFGWNKRQAKPGQVRDGRWMVGMGVASAFRNNLVGKSGARIGVDAKGQVIVETDMTDIGTGSYTIIAQTAAEMMGVPIEAVTVRLGDSRFPVSAGSGGQWGANSSTAGVYAAAMALRAKLAEKAGYPVDQAEFEEGLIRHENKSQTLAALAGREGVWAEDSIEFGDLDKRYAQATFGAHFCEVGVDIDTAEVRIRRMGGAFAAGRILNPKSARSQVIGAMTMGAGSALMEALDVDTRFGFFVNHDMAEYLVPVHADIPEQDVLFIEELDDKSSPMKAKGVGELGICGAGAAVANAIYNATGIRIRDYPLTIDKLLKARAA
>NZ_CP016456.1|WP_069065500.1|1262000_1269518_+|calcium-binding-protein
MMATIIGDNLPNTLTGTIDPDEIYGGGGDDVISGGLGDDSLYGEDGNDTINGDSGDDLIDGGVGNDILNGGDGNDEIITGVGNDIVDGGNGADYIVIGSSLNTADRINGGTGSDVDILSISGIYANSILFDADTVRGVERFSIGSGQVRLTLHAMTDVRWIDAGSQLQTDFLHLNATAATNAMIITGGAGDDIITGGSGDDVINGGLGQDMLVGGAGNDQIIGGLDGDMLTGGAGNDIFTLTYNTPRSDSSPSTIDTITDFEGAGVAGGDKIDLPSYAYGRGIAFNATPINFTFVIGGGASGVQLPAELVGDGFADVSWKHDTVNNRVELWVDVDDNGQFSELDIYTYINGITSLTQEDFTDSFPIWRGTVGGDSLLASAGNIIAYGLGGNDTMRGGDGNDTLYGGDGADVLRGGNDSDTLYGDAGNDTLYGDAGNDTLYGGAGDDVMSGGAGSDSLYGEAGDDVMTAGTSGSYLDGGIGNDQLTGGAGNDTLYGGEGNDGVSGGAGADYIVGFAGADTLDGGDGNDDVRGSDGNDTVQGGAGNDAVRGDGGINIVNGGAGDDAVYVGTEVNARDTATGGTGADVFRLGAAGNAPGSLAAPHVITDFSRVEGDKLKLEFDPYINGTYGYTNVPLVFRGELSSALYYDGAPLPGADLGTGFVQVWWSRVGTGGSAKTVLIIDSDRDLTLSGSDYVVEFAPGTIADIQLTDFVDNPFRTYAGTAGDDSHHGDASNNFIYGLLGNDSLWGDGGSDTIAGGAGIDTLHGEDGNDILYGGDDADSLYGGNDSDTLYGDAGNDTLYGDAGNDTLYGGAGDDVMSGGAGSDSLYGEAGDDVMTAGTSGSYLDGGIGNDQLTGGAGNDTLYGGEGNDGVSGGAGADYIVGFAGADTLDGGDGNDDVRGSDGNDTVQGGAGNDAVRGDGGINIVNGGAGDDAVYVGTEVNARDTATGGTGADVFRLGAAGNAPGSLAAPHVITDFSRVEGDKLKLEFDPYINGTYGYTNVPLVFRGELSSALYYDGAPLPGADLGTGFVQVWWSRVGTGGSAKTVLIIDSDRDLTLSGSDYVVEFAPGTIADIQLTDFVDNPFRTYAGTAGDDSHHGDASNNFIYGLLGNDSLWGDGGSDTIAGGAGIDTLHGEDGNDILYGGDDADSLYGGNDSDTLYGDAGNDTLYGDAGNDTLYGGAGDDVMSGGAGSDSLYGEAGDDVMTAGTSGSYLDGGIGNDQLTGGAGNDTLYGGEGNDGVSGGAGADYIVGFAGADTLDGGDGNDDVRGSDGNDTVQGGAGNDAVRGDGGINIVNGGAGDDAVYVGTEVNARDTATGGTGADVFRLGAAGNAPGSLAAPHVITDFSRVEGDKLKLEFDPYINGTYGYTNVPLVFRGELSSALYYDGAPLPGADLGTGFVQVWWSRVGAGGSAKTVLIIDSDRDLTLSGSDYVVEFAPGTIADIQLTDFVDNPFRRIVGTPQANEFIDTDEANIYYGVDGDDLIVGNGGNDELHGGNGNDTISGGQGNDYIVGGAGDDAIISGAGTDTIYGDDGNDIVHGGDDADTIYGGTGSDQLHGEFGADTLYAQDGNDQVFGGADNDQIFGGLGDDSLDGGDGNDTVYGDGGADTLIGGAGADWLYGGEGDDLLLGGEGNDMLDGGSGYDIASYVGSNVALTIDLSANSIFALGGNIGTDTLSSVEGIIGSAFNDVLTGNSTDNVIEGGAGNDLMDGRDGVDTLRYTSATAGVTLSLALTGAQATGGAGTDTVTNFENITGSAYNDVLSGSSANNILLGGGGNDSLAGGDGEDRLDGADGADTVQGDAGDDQIFGGAGNDSLFGGAGLDQIFGGAGNDSLSGGADDDRLYGDAGDDSIDGGDGNDIILGGEGNDTIDGGVGADDMAGGLGNDIYIVTSVNDMVNEAADEGVDEVRTNLASYTLGAHVENLTGIRSAGQTLIGNSLANRITGTGSADILNGGGGADMMIGGAGDDLYYVNDAGDTIVEANNGGNDTVNASVSYSLVGIYVESLALTGTAAINGSGNSLANTLIGNGNNNVLSGGTGNDILNGGAGNDTLDGGSGIDTMVGGIGNDIYIVDHAGDIVTEATNSGTDEVRTGLSTYTLGVNVEKLTATTNNGQTLIGNAVANRMTGGDGNDTLNGGIGADVMIGGKGNDIYVVDHVSEEVIELGGEGNDEVRTALTNYILADHVETLTATGSTGQTLNGNALANTITGTAGHDVINGGIGADIMTGGDGNDVYVVDNAGDIIVEFNGGGADRIDASVDFSLAGIYVENLRLTGTGNINAVGNNLANILTGNGGNNLLNGGAGADTMTGGLGDDVYIVDNIGDVVIETNIGGTDVINASVSYTLAGTFVETLNLTGIANIGGTGNSVDNAINGNSGNNALSGGGGNDRLEGNGGNDVLTGGAGQDMFVFDTALGAGNVDIITDFNVTDDVISLASSIFSAAGAAGQLAAGAFRLGAVALDASDRIMYDNATGNLYYDANGNAVGGSVLFAQLAAGLALTNADFVIG
>NZ_CP016456.1|WP_069065501.1|1269583_1270261_+|peptidylprolyl-isomerase
MIVRLSLFHILALALALSSGLATAAPTNRPTLGYTRVAIETSVGTIIVAVDQKRAPRTAANFLTYVDDGRFDGVTFYRAARRKSAPTMGLIQGGIDSDARRSLPPVVHEPTTQTGIRHLDATLSMARPNRPNSAMGNFFITIGPTPTMDARPGYIGYAAFGHVVAGMDVVKKILAVPTCCGTGPMRGQMIVKPIVIRHAKRLDGKAKPTGGVKPWLIGRLRKPAR
>NZ_CP016456.1|WP_037476696.1|1270264_1270501_-|DUF2061-domain-containing-protein
MSLDLIKTGTYLSIHLTVGFTVAYLMTGSVALAGGIALVEPVINAVAFFFHEKAWKKIQARPPREGYPASRHDQAAFA
>NZ_CP016456.1|WP_069065502.1|1270615_1271356_+|DUF72-domain-containing-protein
MAGRIRVGIGGWVYAPWRDNFYPAGLRQKDELAYVGAHLTATEINATYYSSHKPATFASWAKVVPDGFQFAVKASRYCTNRKVLAEAGDSIAKFTKQGIVELGDRLGPILWQFMPTKRFDPDDFSAFLRLLPASVDGVALRHAVEVRHESFDDPAFLEMARNAGVAVVLADHDSYPAIQGYDVGFSYLRLMRTQAEETTGYSPTDINHWTDQARTLAKQGDVYAFVIGGAKERNPAAAKALIAALG
>NZ_CP016456.1|WP_069065503.1|1271689_1271875_-|PspC-domain-containing-protein
MNNSFTLDRRNGKIMGVCAGLSNRSGLDVTLIRVAVVLLTLCALGPIGVVAYLLAGWLAEG
>NZ_CP016456.1|WP_069065504.1|1272214_1272616_+|gamma-glutamylcyclotransferase
MCVIHPPLFVYGTLRRGFDGPMALRLQGATQYIGRAFAQGRLYRVGDYPAFLPGPEGQVIGDLLALSDPAATLAWLDAYEECAVTYPQPHEYRREKLSVWGPDGPIVAWAYVYALPVTDLPLIAGGDFLPRQR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016456_1	1.1\|1257392\|57\|NZ_CP016456\|CRISPRCasFinder	1257392-1257448	57	NZ_CP016456.1	1254543-1254599	0	1.0

1. spacer 1.1|1257392|57|NZ_CP016456|CRISPRCasFinder matches to position: 1254543-1254599, mismatch: 0, identity: 1.0

gccatttcgccgatttttcgttggattccgtagagttgatgcggttatcccggcatc	CRISPR spacer
gccatttcgccgatttttcgttggattccgtagagttgatgcggttatcccggcatc	Protospacer
*********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

512354 : 520600

Cyanophage(25.0%)

tail,head,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069064970.1\|512354_512906_-\|tail	tail tape measure protein	M4SQV9	Cyanophage	2.4e-06	36.8
WP_069064971.1\|513045_513243_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_069064972.1\|513239_513551_-	gene transfer agent family protein	NA	NA	NA	NA
WP_069064973.1\|514008_514332_+	hypothetical protein	NA	NA	NA	NA
WP_069064974.1\|514526_514934_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_069064975.1\|515117_515654_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_069064976.1\|515653_515926_-	hypothetical protein	NA	NA	NA	NA
WP_171899200.1\|515922_516093_-	hypothetical protein	NA	NA	NA	NA
WP_083217072.1\|516079_517462_-\|tail	tail fiber domain-containing protein	A0A1S5R3Z4	Pseudomonas_phage	5.5e-23	37.4
WP_069064978.1\|517987_519106_-\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	3.6e-81	47.0
WP_069064979.1\|519274_519991_-	hypothetical protein	NA	NA	NA	NA
WP_069064980.1\|520189_520600_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	5.4e-19	46.5

DBSCAN-SWA_2

1099491 : 1107300

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069065385.1\|1099491_1100277_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-21	30.6
WP_069066892.1\|1100411_1101932_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_069065386.1\|1101965_1102817_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	5.9e-52	42.6
WP_069065387.1\|1102828_1104313_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	6.7e-168	63.0
WP_069065388.1\|1104516_1105278_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.6e-77	61.9
WP_069065389.1\|1105274_1106333_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_069065390.1\|1106335_1106782_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	8.2e-45	67.9
WP_069065391.1\|1106778_1107300_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.5e-26	43.9

DBSCAN-SWA_3

2131760 : 2139310

Synechococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037480038.1\|2131760_2132414_+	fructose-6-phosphate aldolase	A0A0C5AMY8	Cyanophage	6.8e-48	48.6
WP_069067006.1\|2132703_2133423_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	4.4e-16	33.8
WP_069066068.1\|2133485_2134427_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	6.0e-13	32.7
WP_069067007.1\|2134404_2135166_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_069066069.1\|2135179_2136088_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	9.9e-05	28.4
WP_069066070.1\|2136268_2136865_+	recombination protein RecR	NA	NA	NA	NA
WP_069067008.1\|2137031_2137352_+	hypothetical protein	NA	NA	NA	NA
WP_037477014.1\|2137512_2137971_+	VOC family protein	NA	NA	NA	NA
WP_037477011.1\|2138028_2138559_+	peptide deformylase	E3SLL2	Synechococcus_phage	7.2e-24	43.5
WP_037477010.1\|2138608_2139310_-	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	1.7e-33	36.2

DBSCAN-SWA_4

2324192 : 2331608

uncultured_Mediterranean_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069066196.1\|2324192_2326016_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	2.7e-110	39.6
WP_069067021.1\|2326024_2326786_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.7e-34	33.8
WP_069066197.1\|2326782_2327373_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.4e-38	46.1
WP_037476635.1\|2327400_2327637_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.3e-06	70.0
WP_069066198.1\|2327663_2328116_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_037476637.1\|2328112_2328892_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.2e-44	39.8
WP_037476638.1\|2328969_2329098_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_069066199.1\|2329459_2330419_-	cell wall hydrolase	A0A141HRV8	Bacillus_phage	5.0e-07	35.8
WP_069067022.1\|2330612_2331608_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	1.3e-50	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016457

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016453

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP016454

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP016456

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection