CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017043	Selenomonas sp. oral taxon 920 strain W5150 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	5	0
NZ_CP017042	Selenomonas sp. oral taxon 920 strain W5150 chromosome, complete genome	1 crisprs	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,WYL,DEDDh	4	4	5	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6881

Klebsiella_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069181608.1\|600_780_-	hypothetical protein	NA	NA	NA	NA
WP_069181609.1\|794_6881_-	N-6 DNA methylase	A0A248SL14	Klebsiella_phage	1.9e-224	30.0

DBSCAN-SWA_2

27456 : 42665

Streptococcus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069181632.1\|27456_27837_-	hypothetical protein	A0A2H4JAA4	uncultured_Caudovirales_phage	2.5e-10	36.4
WP_069181633.1\|27935_29057_-	hypothetical protein	A0A1W6JNI1	Staphylococcus_phage	1.2e-20	45.4
WP_069181674.1\|29071_29497_-	M23 family metallopeptidase	A0A1P8BKT8	Lactococcus_phage	7.8e-21	52.2
WP_083205821.1\|29568_30123_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_069181634.1\|30387_30594_-	hypothetical protein	NA	NA	NA	NA
WP_069181635.1\|30887_31256_-	HNH endonuclease	Q7Y4J8	Streptococcus_phage	2.5e-23	46.6
WP_173862622.1\|31307_32210_-	radical SAM protein	A0A0A7S0B8	Clostridium_phage	8.1e-84	52.7
WP_069181637.1\|32338_32680_-	hypothetical protein	NA	NA	NA	NA
WP_069181638.1\|32742_32988_-	hypothetical protein	NA	NA	NA	NA
WP_069181639.1\|33045_34656_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_069181640.1\|34652_34964_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	2.1e-15	45.6
WP_069181641.1\|35005_35503_-	hypothetical protein	NA	NA	NA	NA
WP_069181642.1\|35651_35963_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083205823.1\|35969_36164_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069181643.1\|36160_36733_-	hypothetical protein	NA	NA	NA	NA
WP_069181644.1\|36968_37265_-	hypothetical protein	NA	NA	NA	NA
WP_069181645.1\|37285_37474_-	transcriptional regulator	NA	NA	NA	NA
WP_069181646.1\|37489_37720_-	helix-turn-helix transcriptional regulator	A8ATK0	Listeria_phage	7.7e-07	50.9
WP_083205824.1\|37880_38234_+	helix-turn-helix transcriptional regulator	A0A1L2JY18	Aeribacillus_phage	8.0e-11	36.1
WP_069181648.1\|39616_40072_-	single-stranded DNA-binding protein	A0A0U4J8R8	Bacillus_phage	2.4e-15	34.4
WP_069181649.1\|40382_42665_-	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	5.7e-49	35.6

DBSCAN-SWA_3

48653 : 49259

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069181656.1\|48653_49259_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.9e-13	31.1

DBSCAN-SWA_4

57358 : 59822

Pontimonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173862621.1\|57358_59311_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	1.9e-08	33.9
WP_069181666.1\|59459_59822_+	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.7e-13	36.3

DBSCAN-SWA_5

64429 : 64969

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069181671.1\|64429_64969_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	8.7e-25	55.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017042

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017042_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017042_1

991944-993916

TypeI

Consensus_repeat	Method
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CRT

29 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,csa3

The CRISPR arrays of NZ_CP017042_1

>merge|NZ_CP017042|1|991944-993916|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAACATTTGGGCGAAAAGCACGGTCACTTGTTGTCTGAAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACCCGCTGCTGGGGGCAAATCTATTGCGGCATCGTTGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACACGATACGCTCTTGGATTGGTGTCGTCTTGTCATAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACGCGCAGTACAAGGATAACAACGATATTGATGCCTGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACAAGCAGTGCAACGAAAAGACGATGGAGACGGCGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTGCGGCTCATAGGACTTTGTCATCATCAAATCCATGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACGCCTCATATCGGCGGGACGTGACCTGCCATCATCGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACAGCTGCCCCGTGCTTGTATCGATCTGCATCGCGCGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACCAGTGGGCCGCAGAGGATGGAGACATAGACCCAAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACACCAGACCGCACAGGGAGAGGAGTTAAAGCTATGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACATGACGGATGAGGATAAGCTCCGCAAAGCACGCGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACCCGACGACACATCCGCCGCCGTAGTCAAAGAGCAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTTGCCCAAACGAGCGGTGTACTTGATGATGTTGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTTTGCGATACGCTTTGAGAGGGTCATTGCCTGTAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACCCGTCCTATGCCGCCTACAAGAAATCGCGGGCGGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACGTGGTTGTGCCAGACCTGCTCGGAAAAATGCGTGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTGCAGTGCCTGTGCGTTGGCGCGTGAGATGTCGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTTTCGGCGATTGATGCAGAGCTTGCAAAAGATGAAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTGCATCGGCGCGGGCATTGGCAAGAAGAACCGCAGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTCTGTTGGAATGGGGCTCACCAATACCCAAAATCGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACGAGCGCATCGACAAGTTGCGAATATGCTGCACGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACATTGACCCAGTTGTTACGGCTTTTAGGCGGATTGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACAAGGTGCGGAGCATCTACGGGGACATCGCCATGGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACACACGACAAGCAGCCGAAAGCGCCAAGAAGGCAGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACTTCCGAGCAAAGATGCTCGCGCATGGGATTGACCGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACAGAGACGGGTACATCAAAGCCAACGGCGCAACCGGTCGCGCCCCGCATGGGGCGCGTGGATTGAAACGTTTTGACAAGGTGGTCTCGCGCAACCCCGGACAGTCGCGCCCCACACGGGGCGCGTGGATTGAAACAAGGCGTACAACGCGCAGGACGTTGTGACAGAGGTCGCGCCCCACACGGGGTGCGTGGATTGAAACTCCTTGACTGGCAGGAATCCGAGGCGCATCGTTGGTCGCGCCCCGCATGGGGCGCGTGAAAAGTTAG

>NZ_CP017042|1|1|991944-993849|PILER-CR
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATTTGGGCGAAAAGCACGGTCACTTGTTGTCTGAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGCTGCTGGGGGCAAATCTATTGCGGCATCGTT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACGATACGCTCTTGGATTGGTGTCGTCTTGTCATA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GCGCAGTACAAGGATAACAACGATATTGATGCCT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AAGCAGTGCAACGAAAAGACGATGGAGACGGCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCGGCTCATAGGACTTTGTCATCATCAAATCCAT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GCCTCATATCGGCGGGACGTGACCTGCCATCATC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AGCTGCCCCGTGCTTGTATCGATCTGCATCGCGC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CAGTGGGCCGCAGAGGATGGAGACATAGACCCAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACCAGACCGCACAGGGAGAGGAGTTAAAGCTATG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATGACGGATGAGGATAAGCTCCGCAAAGCACGC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGACGACACATCCGCCGCCGTAGTCAAAGAGCA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTGCCCAAACGAGCGGTGTACTTGATGATGTTG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTTGCGATACGCTTTGAGAGGGTCATTGCCTGTA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGTCCTATGCCGCCTACAAGAAATCGCGGGCGG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GTGGTTGTGCCAGACCTGCTCGGAAAAATGCGTG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCAGTGCCTGTGCGTTGGCGCGTGAGATGTCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTTCGGCGATTGATGCAGAGCTTGCAAAAGATGAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCATCGGCGCGGGCATTGGCAAGAAGAACCGCA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TCTGTTGGAATGGGGCTCACCAATACCCAAAATC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GAGCGCATCGACAAGTTGCGAATATGCTGCACG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATTGACCCAGTTGTTACGGCTTTTAGGCGGATT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AAGGTGCGGAGCATCTACGGGGACATCGCCATGG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACACGACAAGCAGCCGAAAGCGCCAAGAAGGCAG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTCCGAGCAAAGATGCTCGCGCATGGGATTGACC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AGAGACGGGTACATCAAAGCCAACGGCGCAACCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GTTTTGACAAGGTGGTCTCGCGCAACCCCGGACA
GTCGCGCCCCACACGGGGCGCGTGGATTGAAAC	AAGGCGTACAACGCGCAGGACGTTGTGACAGAG
GTCGCGCCCCACACGGGGTGCGTGGATTGAAAC

>NZ_CP017042|1|1|991944-993916|CRISPRCasFinder
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATTTGGGCGAAAAGCACGGTCACTTGTTGTCTGAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGCTGCTGGGGGCAAATCTATTGCGGCATCGTT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACGATACGCTCTTGGATTGGTGTCGTCTTGTCATA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GCGCAGTACAAGGATAACAACGATATTGATGCCT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AAGCAGTGCAACGAAAAGACGATGGAGACGGCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCGGCTCATAGGACTTTGTCATCATCAAATCCAT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GCCTCATATCGGCGGGACGTGACCTGCCATCATC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AGCTGCCCCGTGCTTGTATCGATCTGCATCGCGC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CAGTGGGCCGCAGAGGATGGAGACATAGACCCAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACCAGACCGCACAGGGAGAGGAGTTAAAGCTATG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATGACGGATGAGGATAAGCTCCGCAAAGCACGC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGACGACACATCCGCCGCCGTAGTCAAAGAGCA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTGCCCAAACGAGCGGTGTACTTGATGATGTTG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTTGCGATACGCTTTGAGAGGGTCATTGCCTGTA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGTCCTATGCCGCCTACAAGAAATCGCGGGCGG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GTGGTTGTGCCAGACCTGCTCGGAAAAATGCGTG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCAGTGCCTGTGCGTTGGCGCGTGAGATGTCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTTCGGCGATTGATGCAGAGCTTGCAAAAGATGAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCATCGGCGCGGGCATTGGCAAGAAGAACCGCA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TCTGTTGGAATGGGGCTCACCAATACCCAAAATC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GAGCGCATCGACAAGTTGCGAATATGCTGCACG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATTGACCCAGTTGTTACGGCTTTTAGGCGGATT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AAGGTGCGGAGCATCTACGGGGACATCGCCATGG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACACGACAAGCAGCCGAAAGCGCCAAGAAGGCAG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTCCGAGCAAAGATGCTCGCGCATGGGATTGACC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AGAGACGGGTACATCAAAGCCAACGGCGCAACCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GTTTTGACAAGGTGGTCTCGCGCAACCCCGGACA
GTCGCGCCCCACACGGGGCGCGTGGATTGAAAC	AAGGCGTACAACGCGCAGGACGTTGTGACAGAG
GTCGCGCCCCACACGGGGTGCGTGGATTGAAAC	TCCTTGACTGGCAGGAATCCGAGGCGCATCGTTG
GTCGCGCCCCGCATGGGGCGCGTGAAAAGTTAG

>NZ_CP017042|1|1|991944-993916|CRT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATTTGGGCGAAAAGCACGGTCACTTGTTGTCTGAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGCTGCTGGGGGCAAATCTATTGCGGCATCGTT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACGATACGCTCTTGGATTGGTGTCGTCTTGTCATA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GCGCAGTACAAGGATAACAACGATATTGATGCCT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AAGCAGTGCAACGAAAAGACGATGGAGACGGCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCGGCTCATAGGACTTTGTCATCATCAAATCCAT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GCCTCATATCGGCGGGACGTGACCTGCCATCATC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AGCTGCCCCGTGCTTGTATCGATCTGCATCGCGC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CAGTGGGCCGCAGAGGATGGAGACATAGACCCAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACCAGACCGCACAGGGAGAGGAGTTAAAGCTATG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATGACGGATGAGGATAAGCTCCGCAAAGCACGC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGACGACACATCCGCCGCCGTAGTCAAAGAGCA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTGCCCAAACGAGCGGTGTACTTGATGATGTTG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTTGCGATACGCTTTGAGAGGGTCATTGCCTGTA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	CCGTCCTATGCCGCCTACAAGAAATCGCGGGCGG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GTGGTTGTGCCAGACCTGCTCGGAAAAATGCGTG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCAGTGCCTGTGCGTTGGCGCGTGAGATGTCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTTCGGCGATTGATGCAGAGCTTGCAAAAGATGAA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TGCATCGGCGCGGGCATTGGCAAGAAGAACCGCA
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TCTGTTGGAATGGGGCTCACCAATACCCAAAATC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GAGCGCATCGACAAGTTGCGAATATGCTGCACG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ATTGACCCAGTTGTTACGGCTTTTAGGCGGATT
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AAGGTGCGGAGCATCTACGGGGACATCGCCATGG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	ACACGACAAGCAGCCGAAAGCGCCAAGAAGGCAG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	TTCCGAGCAAAGATGCTCGCGCATGGGATTGACC
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	AGAGACGGGTACATCAAAGCCAACGGCGCAACCG
GTCGCGCCCCGCATGGGGCGCGTGGATTGAAAC	GTTTTGACAAGGTGGTCTCGCGCAACCCCGGACA
GTCGCGCCCCACACGGGGCGCGTGGATTGAAAC	AAGGCGTACAACGCGCAGGACGTTGTGACAGAG
GTCGCGCCCCACACGGGGTGCGTGGATTGAAAC	TCCTTGACTGGCAGGAATCCGAGGCGCATCGTTG
GTCGCGCCCCGCATGGGGCGCGTGAAAAGTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017042.1\|WP_069180374.1\|994252_995443_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP017042.1\|WP_069180375.1\|995455_998647_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP017042.1\|WP_069180379.1\|1000449_1000656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185106
NZ_CP017042.1\|WP_006695535.1\|991479_991770_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP017042.1\|WP_069180370.1\|986968_988819_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP017042.1\|WP_069180377.1\|999008_999716_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|129446
NZ_CP017042.1\|WP_069180372.1\|989785_990445_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|187768
NZ_CP017042.1\|WP_069180383.1\|1004541_1004853_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP017042.1\|WP_069180376.1\|998679_999012_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224601
NZ_CP017042.1\|WP_069180371.1\|988818_989784_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP017042.1\|WP_069180378.1\|999712_1000270_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP017042.1\|WP_069180373.1\|990441_991470_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP017042.1\|WP_069180367.1\|982117_982903_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP017042.1\|WP_069180382.1\|1003782_1004517_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP017042.1\|WP_069181547.1\|983801_986240_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP017042.1\|WP_069180381.1\|1002303_1003311_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP017042.1\|WP_069180368.1\|982971_983655_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|183656
NZ_CP017042.1\|WP_069180366.1\|980933_982121_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP017042.1\|WP_069180380.1\|1000671_1002189_-\|type-VI-secretion-protein-ImpB	unknown	unknown	gnl\|CDD\|176454
NZ_CP017042.1\|WP_069180369.1\|986252_986972_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534

Protein	Function_ID	Function_description	E-value
NZ_CP017042.1\|WP_069180374.1\|994252_995443_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.23873e-71
NZ_CP017042.1\|WP_069180375.1\|995455_998647_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP017042.1\|WP_069180379.1\|1000449_1000656_-\|hypothetical-protein	gnl\|CDD\|185106	PRK15184, PRK15184, curli production assembly/transport protein CsgG; Provisional.	0.00864724
NZ_CP017042.1\|WP_006695535.1\|991479_991770_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.79403e-27
NZ_CP017042.1\|WP_069180370.1\|986968_988819_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	2.92483e-111
NZ_CP017042.1\|WP_069180377.1\|999008_999716_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|129446	TIGR00346, Uncharacterized_membrane_protein_HI_1738, 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD. [Transport and binding proteins, Amino acids, peptides and amines].	3.28973e-83
NZ_CP017042.1\|WP_069180372.1\|989785_990445_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	7.35001e-29
NZ_CP017042.1\|WP_069180383.1\|1004541_1004853_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	8.32616e-18
NZ_CP017042.1\|WP_069180376.1\|998679_999012_-\|AzlD-domain-containing-protein	gnl\|CDD\|224601	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism].	6.70192e-32
NZ_CP017042.1\|WP_069180371.1\|988818_989784_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	6.34628e-100
NZ_CP017042.1\|WP_069180378.1\|999712_1000270_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	4.25681e-106
NZ_CP017042.1\|WP_069180373.1\|990441_991470_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	4.15924e-176
NZ_CP017042.1\|WP_069180367.1\|982117_982903_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	2.23122e-106
NZ_CP017042.1\|WP_069180382.1\|1003782_1004517_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	5.85936e-44
NZ_CP017042.1\|WP_069181547.1\|983801_986240_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.56904e-57
NZ_CP017042.1\|WP_069180381.1\|1002303_1003311_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP017042.1\|WP_069180368.1\|982971_983655_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|183656	PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed.	1.48393e-86
NZ_CP017042.1\|WP_069180366.1\|980933_982121_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP017042.1\|WP_069180380.1\|1000671_1002189_-\|type-VI-secretion-protein-ImpB	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	5.23773e-81
NZ_CP017042.1\|WP_069180369.1\|986252_986972_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.91411e-91

>NZ_CP017042.1|WP_006695535.1|991479_991770_+|CRISPR-associated-endonuclease-Cas2
MYVLITYDISTVDADGRRRLRQVARKCRAYGQRVQNSVFECKVDPTQCKQLELALLDIIDLQEDSLRFYYLGKDKGPKVTHYGVKESYDLEAAIII
>NZ_CP017042.1|WP_069180373.1|990441_991470_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKPLLNTLFVNQDEAYLALDGGNVVVVREEKELARFPLHNFEQITTFGYTGASPALMRKCAEENIALTFMSPEGRFQARVIGKMNGNVLLRREQYRRADDETASLALAKNFILGKIYNARWMIERTHRDYAMRIDKEKFQSVSDFLQTSCHEATCASDLEELRGVEGKAAVSYFSVFDDMILKQKGEFFFTERNRRPPLDNMNCLLSFLYALLMNDVGAALEGVGLDSYVGFLHRDRPGRQSLALDLMEELRPMADRTAFSMVNTKKISGKDFRLEEGGAVYLTDDGRKKILEAWHAHKEGVMTHPFLEEKIKWGLVPHVQAMLLARHLRGDLDAYPPFLWK
>NZ_CP017042.1|WP_069180372.1|989785_990445_+|CRISPR-associated-protein-Cas4
MGYAEEEYLMLSEIQHYAFCPRQWGLIHLEQHWQENVLTVEGNALHERAHDENIKEKRGNKIIVRGMRVASPRIGISGACDVVEFHADPTGVSIPSYQSSYRIVPIEYKRGSPKEGEEDVLQLTLQALCLEDMLVTDIPFGYLYYGEIRRRVKVTFSDELKARIPVLVQEMRQYILSGHTPRVKHRKGCKNCSLNNICVPKLNRLESAKHYLERRLAEG
>NZ_CP017042.1|WP_069180371.1|988818_989784_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAVLEKKIDFIGFIVVDHANPNGDPLNGNQPRTNYDGYGEMTEVCIKRKIRNRLQDAGERILVQADERSDDGCDSIRSRVEKHPKVGSILAQMNKGKGKDQGVENKREMRLKFEREACSAWIDVRAFGQVFALKKQDKRKNKEEKSESTDTDGVSVGVRGPVTIHDAVSLDPVTITGVQITKSVNNEPGDKKGSDTMGMKYRADFGVYKFQGSINVQLAEKTGFSDEDAAKVKEALLTIFENDASSARPEGSMEMSRFYWIEHANKIGAVSSAKVHRSVSAQKKDGMDTPKQLDDYVFDDAPLYEIGGVRIEKYVEGSRVD
>NZ_CP017042.1|WP_069180370.1|986968_988819_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWVEQLVQTYDENERFAGRDDVEGMKVALSPMGYSIHDAWLEVVLGENGDFIHAFELPKEERATSMPCTPYPRTSGPVPHPLFDNLSYVSRDYQKFIENPSSKDRESYGAYKELLAKWVQQEDSPLIVRAVYAYISQHDLIYDLIERKIATEKKIKSKLSSVVRFSIEGHIAPWRDKEVQDSYRNVYSRLFYENSSKSLCYGSGKKMVTIEKPDTRGIRTHGDGTRLISSNDEDNFTFRGRFVLGKECLSIGEETVQKSMNALRWLVENQGKNVDGRVFLAWGRNSVSIPSVFDDTEGLIHKRRPMEAAQPDTLKMWAQNLHKALDGYRHDFRRAKTSQVNVIILDAVTNKGRLSICYYGEMAGEDFIERIEKWHTAGQWYQRNQDKTDKKNPGWYPPYFGVPSPRKLVYAYRGDNVSDKQMKMELHRIFFSIVQGVPLPADMERMAYSRVVRRAICDPLKKWEHLILEPACSIICNRLNRKKEVYTVALNERKTNRSYLFGRLLAVADQMERETFTAEEKGSRITNAMRYMNIFSSRPASTWETIQKKLLPYQAKREKFGGKEIALIDEIISMFDDGEFCSNAPLEVEFLLGLSCQRYVFRKENKKDAMREENK
>NZ_CP017042.1|WP_069180369.1|986252_986972_+|type-I-C-CRISPR-associated-protein-Cas5
MRNSIEFQVYGRMALFTDPITKIGGERSSYSVPTYQALKGIIESIYWKPTIYWVVDEVRVMNRITTQSRGVKPMKYSGGRNELSIYTYLSDVCYQVRAHFEFNLHRKELAADRDEHKHHNIAKRMVERGGRRDIFLGTRECQGYVEPVTYGEGAGYYDSAGEMPLGTMFHGFNYADETGGNMLQVRLWQPVMEDGVIRFPRPEECRLVRDIRKVKSKLFDKNSVTFAADEWEELEGGRL
>NZ_CP017042.1|WP_069181547.1|983801_986240_+|CRISPR-associated-helicase/endonuclease-Cas3
MKQYLAHIRRDGSAKQTMRAHLLRVGDLMATYAAGIGLSSMARLIGILHDLGKCTAEFAEYLDWCRKNPGNYSRAGDVDHSTAGGQLLLVQYGRKNADYRFVAEIASLVIFSHHTGLLNYYGQDGKDESSDFLRRNDKADILSRVDLKYFFSEVIAEEELNGIFEQSIYEIADLDAKIARAVHCPDDEMNEAYCFYWGMVHKLLLSMLVDADRLDSAEFELDRPLTDKWETAEIWADFSDKLECKLAGFSLPKEPKAKKIAQLRKKISDDCLKAAEEEPGIFRLCVPTGGGKTLASMRFALQHAQRYQKKRIIVVIPYTSIIDQNVKEIRDIFRVDEAILEHHSNVITEADGEDTESMDWRRILTERWDVPIIFTTQVQFLNTLFAGGNSSIRRMNSLQDSIVIFDEIQTLPVRCTFLFNAAMNFLKDFCRITAVLCTATQPPLEKLDVSINLSDNAAMTSDIEKTFEGFERVDVENCYRYGGWSAEEIASEICKSVEEIGDVLCIVNLTKKAKEIYQAVSEKIQLSDKEIQIVHLSTKMCSAHRKATLKELRRALAERKNHPEKRLVCISTQLIEAGVDVSFPVVYRALAGFSSIAQAAGRCNRHGEMEKGIVRVFECADENLDHLKDIRHGKNIARVMLYDRAANTILSPSVMQEYFRRFYAGRTGKEMRYPLNTQNTIFDLLSANSAGVQARMGRGDRIDSYFRQAFRDAGRAFIVIDSHTEAVLVPYAGGKDMIVAFDDRIFDRKSIGKQMKSAQQYMVNLFSYEIKELEGLGAVWRTESGVMALREEYYNEAFGVQTEEQGNTYCSI
>NZ_CP017042.1|WP_069180368.1|982971_983655_+|fructose-6-phosphate-aldolase
MKYLLDTANLDEIRELSEYLSIAGVTSNPTIVKKEGAVPFFAHMREIRTIIGSLRPLHIQVTARDYDGMMRDAEAIFRHVDEKVYIKVPVDFAGVKVIKALKRQGANVTATAVYGMDQAFIALEAGADCIAPYFNRMEALGVDAANVIGNIAGIINHYGYETEILAASFKQPAQIDRAILAGAHSVTVSPSVLREIFAKKVVTDAIQSFADDWSDLYGGRMLAELDG
>NZ_CP017042.1|WP_069180367.1|982117_982903_+|tryptophan-synthase-subunit-alpha
MSKRLDEKLAKLRAEGRKGLYIYVTAGCPSAETTVDIVRRAEEAGADVIELGLPFSDPMADGPVIQEASVIALKNGMTMKKALAVVKEIRKHSEIPLIGMGYINMVQHYGFEKFVEDFKTAGMDGVIFPDVPHEESEDMRRICAAHEFTLTEFITPGTTEERMQETCKDARGFIYCISNYGVTGVKEIDYSIIGDVCKAARRYTDVPLAIGFGIGTPEAAARAGKQADGVIVGSAVVKRIIDGDIDGGIQLIAAMRKALDA
>NZ_CP017042.1|WP_069180366.1|980933_982121_+|tryptophan-synthase-subunit-beta
MSKKGRFGDYGGQYVPEIAMPALNELEEAYLKYREDEEFLTEFRGYLREYAGRPTNLYFAERLTKHYGKANIYLKREDLLHTGAHKINNALGQALLAKRMGKKRIVAETGAGQHGVATATVAALFGMECHVFMGTVDVERQRLNVFRMRLLGATVIPVSSGTGTLKDATSEAIRYWATNITDTYYVIGSAVGPHPYPEMVRDFQKVIGEEIRMQSAKAFDGKPDYLVACIGGGSNAIGTFYDFRNDADVKKFCVEGGGRGDADGDNAKTLSGAGTPGILHGAYSYLLQNEDGQVIEAYSISAGLDYPGVGPEHSFFKDEGIVTYVSVTDQEALAAFQRLSRIEGIIPALESSHALAYLEKLMPETKAGENVVVCLSGRGDKDVQMVAKELGEEIV
>NZ_CP017042.1|WP_069180374.1|994252_995443_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MFENRKGLGILVAAIFALGTLLSGCGDKQAGGARPTAVKAMNVLRQDTPLTHVYAGQIMGTDEVQIRSRVSGNIVEKYIVGGQFVSAGQPLYRIDARQYESALLQAQAVLAQSEATLNNARTDLARYQQLYASAAVSEQTLSTQQAQVNAYEAAVAANTALVRQAQENLDDTVIYAPMSGQLSVDDVAMGTFVSAGTTTLVSMGSSNPIFAQFSLSENEYLNFVEQAAKTGGIGAVVVELTLSNGSKYPIIGHIVTSDRALAAQTGTLTVKALFDNPDGLLLPGMFARVSLIGDIIPNAVLVPERAVQQLLGKSFVMLVGEDNKAVARTVTLGEKIGSYYVVKDGLDTSDIVVVEGLTTLQEGGDLAVTMVTADEMGFSIEGDSSTFNTRELTPAQ
>NZ_CP017042.1|WP_069180375.1|995455_998647_+|multidrug-efflux-RND-transporter-permease-subunit
MAKFFIHRPIFAIVIAVMIVIIGTIAGLSLPIAQYPQISPPTVAVSANYTGASAAVVNETVAQVIEEQINGTQGMDYMSSTSDDTGRYSLSVTFEVGTDGDMDAVKVQNNAAGANASLPSSVQSAGVTTRKSSGQMAYFVSLYSEDGTYDRAFMKNYATLYFLDAIKRVSGVGEVQVFGADYAMRVWMNPDRLAELGLTVSDITKAINEQNVQAPAGTVGGMPTENGQEKQYTGKVQGRLITPEEFGNVIIASGKDGTFVRLKDVARIETGQRQNNIVAKFNGYPAVGFGIQLTSDANAMITLAEVRKILEEAEKTFPPGLKMKSVFDSTDYINASIKEVVHTFVEALLLVVLVIFLFLQSWRATLIPLLAVPVSLIGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENVEHHMESGLTPIDATERAMSEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAISMAISAFVALTLTPALCALMLKPKKENGTKSVLDRFFDRFNNWFDATRKGYVGIVSKFIRKARVAVIFLLIVCGLTVIIYRNLPTTFVPEEDQGYLMIAIQLPPGTSTNQTQKTVDKIQQAAQREIKGQSAVMSINGFDILAGGANSNGAVVFVGMKDWSQRAGLAESVAAAVGTMFRVGAMEAPEALVIAINPPALPGLGNVGGWSLQLQDMSGHSDTELNDIVNAILAEARTRPELQGVRTTFKINAPSYQYEIDREKVKNLGVQLSDVFTALQVNFGGYEVNDFNQFGRTYKVVLQSDVTYRTEAEAAKFVFVKNSQGGMVPLDTLLKPKLTTGPTQISRFNGARSIQIQGSAGTGYSSGDAMKAITEIVQKHTGSGFSIEWSGQSREEQKSADSTMQVLALCLVFVFLCLAALYESWSVPFAVLFTVPTGIFGALFSEYILATIFGMIGIPAAGYQNSVYMQIGVIMVIGLAAKNAILIVEFAKIRVDRGMDPLKAAIQAAGLRLRPILMTSFAFIIGCLPLCMASGAGAAARNGMGVAVVGGMLFATILGIFLIPVFYVIVDRISRMLGLGKKAKTRTADDYM
>NZ_CP017042.1|WP_069180376.1|998679_999012_-|AzlD-domain-containing-protein
MTFTEQCITIGLCALASVLTRALPFLLLSEKKPTPPIVRYLGNVLPAAVFGMLVVYCLKDTSFLSGNHGLPEITGVIVTAALHLRFRQMLLSIGGGTMIYMILIQYIFIP
>NZ_CP017042.1|WP_069180377.1|999008_999716_-|AzlC-family-ABC-transporter-permease
MRCTDPRLAALRAAFPFTVPILAGFLFLGLTYGIYTNVSGFSFWYPMAMSAIIFGGSLEFIATALLLSPFAPLQTFLLALMVQGRHIFYGISMFEKYRGMGWKKPYLIYGMCDESFSINYTTKIPHGIDSGWFMFFVTLLNQLYWVAGATIGGLVGTSLPINTTGIEFAMTALFVVIFIEQWLNDPQHYTGILGLAAAGIALAVFGRDAFMLPTMFIILAGCLGLRPFIKGRETA
>NZ_CP017042.1|WP_069180378.1|999712_1000270_-|DNA-3-methyladenine-glycosylase-I
MENECRRCSWVKLNDPIYVKYHDEEWGVPLHDDRALYELFILETFQAGLSWATILHKRENFRRAYEGFIPERVAAFDDAKVEELMQDAGIVRNRRKIEASIVNSRIFLEIVKEYGSFDCYIWGFTDGKPVRESCELRTTSPLSDKVSKDLKKRGMAFVGSTCIYSTLQAIGVLAAHTDECDWSKA
>NZ_CP017042.1|WP_069180379.1|1000449_1000656_-|hypothetical-protein
MQRKIEDYADIIHLPRPISKTHPPMSLRDRAGQFAPFSALTGLHAAADRTEGEKAAQHEEYGPPEHTA
>NZ_CP017042.1|WP_069180380.1|1000671_1002189_-|type-VI-secretion-protein-ImpB
MKARTYIAIDLKAFYASVECMERGLNPLTAHLVVADESRTSKTICLAVSPALKAHGIGGRPRLFEVIRAVEQANARRTYRAPQRILTGETRDAAELAAHPELAIAYHIAPPRMALYMDYSMRIYEIYLRHVAPADIHIYSIDEVFIDATSYLDTEDISAHDFAMRLIREVLRETGVTATAGIGTNLYLAKVAMDIVAKRMPPDADGVRIAQLDEMSYRQRLWTHRPLTDFWRIGKGYAKRLEEHGLYTMGDIARCSLGGANARHSEDLLYRLFGVQAELLIDHAWGFESVCMADIKGYRPKSRSTHMGQVLQNPYTAQKARLVVWEMADTLSIDLAEKRLTSDRLELTVGYDVECLSRPEIRERYHGRIRTDRYGRRVPWPAHGRVLIERGATTRWIMNALTGLYDEIVNPTLLIRRLTVSAHHLMTQEQCASASEQMSLFGEAEAAQSILSSAEKAAQTKEQALQEAIIAIKKMYGKNAILRGSNFIDGATARLRNTQIGGHKA
>NZ_CP017042.1|WP_069180381.1|1002303_1003311_+|dTDP-glucose-4,6-dehydratase
MKIIVTGGAGFIGANFVYYELREHPEDTIVCYDVLTYAGNLATLDAARKHPQFSFVRGDIADRAAVYALFEREQPDIVVNFAAESHVDRSIENPEIFLQTNVIGTSVLLDACRKYGTRRYHQVSTDEVYGDLPLDRPDLLFTEETPLHASSPYSSSKASADLIVQAYARTYDVPVTISRCSNNYGAFQFPEKLIPLMVIRAMQGEKLPVYGDGLNVRDWLHVDDHCAAIDAIIRYGTNGEVYNVGGHNERSNIEVVRTILAALGKGEDQISYVTDRKGHDRRYAIDPTKIGRELGWKPSTKFDDGIQRTIAWYQTHESWWADILSGAYEKRNEEG
>NZ_CP017042.1|WP_069180382.1|1003782_1004517_-|C40-family-peptidase
MKRRIFLCTSIALLLAAGTAFASPTLREGSQGNEVRVLQQALQNAGYKIKSADGIFGKDTERAVAEFQRDHKIKITGIVTNATWRALKNLPAKSTWGINVPPPANNGKQPLAPNGKPILPASKVSDVIKTAKSYIGTPYVFGGTTPKGFDCSGYLQYVFQKHGITIPRTADEQYKLGLRTKSTKELVPGDLVFFETYEKGASHCGIYLGKGEFIHASTSKGVRVDALANDYWKPRFLGGKHIVK
>NZ_CP017042.1|WP_069180383.1|1004541_1004853_-|helix-turn-helix-transcriptional-regulator
MTAAPLKCIDQDTAQHLADLFKTLGDPTRIKILSLLAAAEELRVYDIADGLDMGQSAISHQLRVLRSARLVKFRRDGKEVLYSIDDDHVLKLLSQGLEHVQHA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017042_1	1.5\|992247\|33\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992247-992279	33	NZ_CP017042.1	666513-666545	0	1.0
NZ_CP017042_1	1.6\|992313\|35\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992313-992347	35	NZ_CP017042.1	674511-674545	0	1.0
NZ_CP017042_1	1.17\|993049\|33\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	993049-993081	33	NZ_CP017042.1	687587-687619	1	0.97
NZ_CP017042_1	1.7\|992381\|34\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992381-992414	34	NZ_CP017042.1	649596-649629	2	0.941

1. spacer 1.5|992247|33|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to position: 666513-666545, mismatch: 0, identity: 1.0

aagcagtgcaacgaaaagacgatggagacggcg	CRISPR spacer
aagcagtgcaacgaaaagacgatggagacggcg	Protospacer
*********************************

2. spacer 1.6|992313|35|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to position: 674511-674545, mismatch: 0, identity: 1.0

tgcggctcataggactttgtcatcatcaaatccat	CRISPR spacer
tgcggctcataggactttgtcatcatcaaatccat	Protospacer
***********************************

3. spacer 1.17|993049|33|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to position: 687587-687619, mismatch: 1, identity: 0.97

tgcagtgcctgtgcgttggcgcgtgagatgtcg	CRISPR spacer
tggagtgcctgtgcgttggcgcgtgagatgtcg	Protospacer
** ******************************

4. spacer 1.7|992381|34|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to position: 649596-649629, mismatch: 2, identity: 0.941

gcctcatatcggcgggacgtgacctgccatcatc	CRISPR spacer
gcctcgtatcggcggaacgtgacctgccatcatc	Protospacer
*****.*********.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017042_1	1.19\|993183\|34\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	993183-993216	34	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	386358-386391	8	0.765
NZ_CP017042_1	1.15\|992915\|34\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992915-992948	34	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	230484-230517	9	0.735
NZ_CP017042_1	1.24\|993516\|34\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	993516-993549	34	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	156146-156179	9	0.735
NZ_CP017042_1	1.11\|992649\|33\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992649-992681	33	NC_047886	Pectobacterium phage DU_PP_II, complete genome	21363-21395	11	0.667

1. spacer 1.19|993183|34|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

tgcatcggcgcgggcattggcaagaagaaccgca	CRISPR spacer
tgcatcggcgagcgcattggcaagcgccgccgaa	Protospacer
********** * *********** .  .*** *

2. spacer 1.15|992915|34|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 9, identity: 0.735

ccgtcctatgccgcctacaagaaatcgcgggcgg	CRISPR spacer
taagcgtctgccgcctgcaggaaatcgcgggcga	Protospacer
. . * * ********.**.*************.

3. spacer 1.24|993516|34|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.735

acacgacaagcagccgaaagcgccaagaaggcag	CRISPR spacer
ggcctgcaggcagccgaaatcgccaagaaggcga	Protospacer
.  * .**.********** ************..

4. spacer 1.11|992649|33|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NC_047886 (Pectobacterium phage DU_PP_II, complete genome) position: , mismatch: 11, identity: 0.667

atgacggatgaggataagctccgcaaagcacgc	CRISPR spacer
ctgacggatgaggataagcagcgcatgatggct	Protospacer
 ******************  **** ....  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

478402 : 485826

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069179948.1\|478402_479434_+	GDP-mannose 4,6-dehydratase	A0A0E3F7G9	Synechococcus_phage	2.0e-115	62.8
WP_069179949.1\|479458_480781_+	cupin domain-containing protein	A0A1V0SH58	Hokovirus	1.2e-38	26.9
WP_069179950.1\|480777_481722_+	GDP-L-fucose synthase	A0A1J0F9I6	Only_Syngen_Nebraska_virus	3.2e-91	52.3
WP_069179951.1\|481885_483625_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.4e-31	31.3
WP_069179952.1\|483691_484675_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A2P1ELS8	Moumouvirus	7.6e-43	34.7
WP_069179953.1\|484671_485826_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L470	Tupanvirus	8.9e-35	33.8

DBSCAN-SWA_2

645432 : 688019

Bacillus_phage(15.0%)

terminase,holin,tail,head,protease,integrase

attL 639592:639608|attR 671002:671018

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
639592:639608	attL	NA	NA	NA	NA
WP_069180074.1\|645432_646596_-\|integrase	site-specific integrase	A0A2R2ZGM9	Clostridioides_phage	2.5e-21	27.6
WP_069180075.1\|647053_647491_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_069180076.1\|647533_648040_-	hypothetical protein	NA	NA	NA	NA
WP_069180077.1\|648054_648270_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_069180078.1\|648259_648667_-	helix-turn-helix transcriptional regulator	A0A0A7RTU8	Clostridium_phage	6.2e-07	36.5
WP_069180079.1\|648835_649045_+	DUF739 domain-containing protein	NA	NA	NA	NA
WP_069180080.1\|649096_649318_+	hypothetical protein	NA	NA	NA	NA
WP_159057708.1\|649314_649491_-	hypothetical protein	NA	NA	NA	NA
WP_069180081.1\|649687_650083_+	hypothetical protein	NA	NA	NA	NA
WP_069180082.1\|650075_650393_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_069180083.1\|650389_650674_+	hypothetical protein	NA	NA	NA	NA
WP_159057709.1\|650717_650891_+	hypothetical protein	NA	NA	NA	NA
WP_069180084.1\|650893_651172_+	hypothetical protein	NA	NA	NA	NA
WP_107528580.1\|651165_651630_+	siphovirus Gp157 family protein	A6M981	Geobacillus_virus	4.3e-12	31.4
WP_083205762.1\|651640_652309_+	ERF family protein	K7P6W7	Enterobacteria_phage	2.0e-39	57.7
WP_083205809.1\|652398_653010_+	hypothetical protein	E9LUU3	Lactobacillus_phage	1.1e-18	27.8
WP_069180086.1\|653006_653243_+	hypothetical protein	NA	NA	NA	NA
WP_069180087.1\|653248_653554_+	hypothetical protein	NA	NA	NA	NA
WP_069180088.1\|653569_654037_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_069180089.1\|654073_654886_+	hypothetical protein	NA	NA	NA	NA
WP_069181530.1\|655046_655646_+	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	2.5e-20	34.8
WP_107528581.1\|655755_656136_+	hypothetical protein	NA	NA	NA	NA
WP_069180090.1\|656145_656952_+	phosphoadenosine phosphosulfate reductase family protein	F8UBB2	Clostridium_phage	9.4e-07	23.4
WP_069180091.1\|656966_657401_+	DUF1064 domain-containing protein	A0A0U4ISA7	Bacillus_phage	1.7e-18	44.3
WP_069180092.1\|657628_657865_+	hypothetical protein	NA	NA	NA	NA
WP_069180093.1\|657870_658218_+	hypothetical protein	NA	NA	NA	NA
WP_069180094.1\|658229_658703_+	class I SAM-dependent methyltransferase	A0A0E3Y6D6	Fusobacterium_phage	6.4e-56	61.3
WP_069180095.1\|658699_659083_+	hypothetical protein	NA	NA	NA	NA
WP_069180096.1\|659193_659595_+	hypothetical protein	NA	NA	NA	NA
WP_069180097.1\|659591_659978_+	single-stranded DNA-binding protein	S5MNH0	Brevibacillus_phage	4.3e-26	44.9
WP_069180098.1\|659991_660375_+	hypothetical protein	NA	NA	NA	NA
WP_069180099.1\|660386_660659_+	hypothetical protein	NA	NA	NA	NA
WP_069180100.1\|660677_661196_+	hypothetical protein	NA	NA	NA	NA
WP_069180101.1\|661331_661706_+	hypothetical protein	NA	NA	NA	NA
WP_159057710.1\|661851_662202_+\|terminase	terminase small subunit	A0A141E1Y3	Streptococcus_phage	2.3e-10	37.7
WP_069180103.1\|662194_663523_+	hypothetical protein	A0A1B1IT85	uncultured_Mediterranean_phage	1.9e-52	42.6
WP_069180104.1\|663545_663791_+	hypothetical protein	NA	NA	NA	NA
WP_069180105.1\|663796_665497_+\|head,tail	head-tail connector protein	W6MYA0	Pseudomonas_phage	6.0e-80	35.0
WP_069180106.1\|665500_665791_+	hypothetical protein	NA	NA	NA	NA
WP_069180107.1\|665765_666371_+	hypothetical protein	NA	NA	NA	NA
WP_069180108.1\|666389_667376_+	hypothetical protein	Q775C7	Bordetella_phage	9.5e-62	40.0
WP_069180109.1\|667393_667783_+	hypothetical protein	NA	NA	NA	NA
WP_159057711.1\|667782_668001_+	hypothetical protein	NA	NA	NA	NA
WP_069180110.1\|668070_668667_+	hypothetical protein	G9L6C9	Escherichia_phage	2.3e-26	35.6
WP_069180111.1\|668681_670955_+	hypothetical protein	A0A193GZ54	Enterobacter_phage	2.1e-112	31.2
WP_069180112.1\|670947_671418_+	hypothetical protein	NA	NA	NA	NA
671002:671018	attR	NA	NA	NA	NA
WP_069180113.1\|671424_672111_+	hypothetical protein	NA	NA	NA	NA
WP_069180114.1\|672126_674292_+	hypothetical protein	NA	NA	NA	NA
WP_069180115.1\|674303_683726_+	hypothetical protein	A0A2I7QLB2	Vibrio_phage	2.2e-46	23.7
WP_069180116.1\|683737_684550_+	hypothetical protein	A0A1B1IW61	uncultured_Mediterranean_phage	1.4e-05	24.5
WP_159057712.1\|684615_685083_+\|tail	tail fiber protein	E5E3Q7	Burkholderia_phage	6.6e-05	38.8
WP_069180118.1\|685122_685722_+	hypothetical protein	NA	NA	NA	NA
WP_069180119.1\|685733_686084_+	hypothetical protein	NA	NA	NA	NA
WP_107528583.1\|686085_686250_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_069180120.1\|686316_686832_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_069180121.1\|686828_687380_+	N-acetylmuramoyl-L-alanine amidase	A0A142F1B8	Bacillus_phage	2.1e-13	34.3
WP_069180122.1\|687401_688019_+\|protease	glycoprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1166468 : 1178718

Streptococcus_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069180516.1\|1166468_1167062_-	hypothetical protein	E3SNU8	Prochlorococcus_phage	2.2e-53	56.7
WP_069180517.1\|1167058_1167691_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.5e-31	41.4
WP_069180518.1\|1167683_1168733_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.6e-67	42.0
WP_069180519.1\|1168739_1170191_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.0e-64	35.5
WP_069181553.1\|1170196_1170910_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	8.2e-47	42.4
WP_069180520.1\|1170971_1171460_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.5e-20	39.4
WP_069180521.1\|1171564_1172515_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.1e-54	39.6
WP_069180522.1\|1172603_1173512_-	RNA-binding protein	NA	NA	NA	NA
WP_069180523.1\|1173517_1173862_-	ribosome silencing factor	NA	NA	NA	NA
WP_069180524.1\|1173876_1174926_-	LCP family protein	A0A1X9I5X1	Streptococcus_phage	4.8e-11	26.0
WP_069181554.1\|1174960_1175536_-	HD domain-containing protein	NA	NA	NA	NA
WP_069180525.1\|1175519_1176140_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_173862590.1\|1176330_1177584_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.6e-100	49.7
WP_069180526.1\|1177593_1178718_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.0e-67	41.9

DBSCAN-SWA_4

1287673 : 1404238

126

Erysipelothrix_phage(37.93%)

terminase,holin,head,tail,transposase,protease,capsid,tRNA,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069180611.1\|1287673_1288297_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_069180612.1\|1288300_1289131_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_069180613.1\|1289263_1290613_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_069180614.1\|1290770_1291250_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_069180615.1\|1291246_1292350_-	trypsin-like peptidase domain-containing protein	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	28.0
WP_069180616.1\|1292363_1293119_-	MBL fold metallo-hydrolase	A0A2I7SDH3	Paenibacillus_phage	7.6e-43	42.0
WP_069180617.1\|1293264_1293867_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_069180618.1\|1293876_1294530_-	(d)CMP kinase	NA	NA	NA	NA
WP_069180619.1\|1294541_1295849_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_069181562.1\|1295852_1297103_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	2.1e-13	39.6
WP_069180620.1\|1297838_1301231_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-243	39.7
WP_069180621.1\|1301266_1303030_-	hypothetical protein	NA	NA	NA	NA
WP_083205812.1\|1303060_1303747_-	glycosyl transferase family 2	NA	NA	NA	NA
WP_069180623.1\|1303746_1304694_-	hypothetical protein	NA	NA	NA	NA
WP_069180624.1\|1304788_1305115_-	divalent cation tolerance protein CutA	J3IYW3	Acanthamoeba_polyphaga_lentillevirus	1.8e-09	33.0
WP_069180625.1\|1305138_1306668_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_069180626.1\|1306924_1313806_+	hemagglutinin repeat-containing protein	A0A0R6PJK4	Moraxella_phage	6.9e-42	28.5
WP_069180627.1\|1313812_1314235_+	hypothetical protein	NA	NA	NA	NA
WP_069180628.1\|1315395_1315824_+	hypothetical protein	NA	NA	NA	NA
WP_083205773.1\|1315831_1316266_+	hypothetical protein	A0A2I7SCU7	Paenibacillus_phage	5.7e-19	61.7
WP_083205774.1\|1316262_1316703_+	DUF2691 family protein	NA	NA	NA	NA
WP_069180630.1\|1316819_1318490_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_069180631.1\|1318494_1320066_-	recombinase family protein	Q6DMS5	Streptococcus_phage	9.6e-141	53.3
WP_069180632.1\|1320044_1321544_-	recombinase family protein	Q6DMS6	Streptococcus_phage	2.6e-74	43.6
WP_069180633.1\|1321890_1323891_+	hypothetical protein	NA	NA	NA	NA
WP_009438368.1\|1323974_1324160_-	hypothetical protein	NA	NA	NA	NA
WP_069181563.1\|1324271_1324664_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	8.2e-33	56.5
WP_069180634.1\|1324666_1325740_-	hypothetical protein	NA	NA	NA	NA
WP_069181564.1\|1325744_1325966_-	hypothetical protein	NA	NA	NA	NA
WP_069180635.1\|1325965_1327654_-	hypothetical protein	NA	NA	NA	NA
WP_069180636.1\|1327650_1328559_-	hypothetical protein	NA	NA	NA	NA
WP_069180637.1\|1328569_1328983_-	hypothetical protein	NA	NA	NA	NA
WP_173862611.1\|1328985_1329339_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	NA	NA	NA
WP_069180638.1\|1329298_1331851_-	hypothetical protein	NA	NA	NA	NA
WP_069180639.1\|1332036_1332351_-	hypothetical protein	NA	NA	NA	NA
WP_069180640.1\|1332362_1332962_-\|tail	phage tail protein	A0A1G5SA63	Enterococcus_phage	1.0e-10	28.7
WP_069180641.1\|1332963_1333326_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_069180642.1\|1333322_1333721_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_173862595.1\|1333713_1334052_-\|head	phage head closure protein	NA	NA	NA	NA
WP_009657058.1\|1334052_1334328_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B0RXK2	Streptococcus_phage	1.2e-14	46.2
WP_069180644.1\|1334437_1334980_+	hypothetical protein	NA	NA	NA	NA
WP_069180645.1\|1335063_1336239_-\|capsid	phage major capsid protein	Q6DMU0	Streptococcus_phage	7.5e-98	47.8
WP_069180646.1\|1336255_1336945_-\|protease	Clp protease ClpP	Q6DMU1	Streptococcus_phage	3.3e-69	63.3
WP_069181566.1\|1336934_1338185_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	2.1e-178	73.9
WP_069180647.1\|1338258_1338750_+	hypothetical protein	NA	NA	NA	NA
WP_069180648.1\|1338770_1339754_+	HNH endonuclease	NA	NA	NA	NA
WP_069180649.1\|1340090_1341692_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	2.0e-263	81.9
WP_069181567.1\|1341787_1342066_-	hypothetical protein	NA	NA	NA	NA
WP_069180650.1\|1342226_1342403_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_069180651.1\|1342399_1342636_-	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	5.1e-14	43.8
WP_069180652.1\|1342619_1343510_-	virulence protein	A0A2K5B280	Erysipelothrix_phage	1.5e-37	34.4
WP_069180653.1\|1343627_1343909_-	prevent-host-death protein	NA	NA	NA	NA
WP_069180654.1\|1343911_1344451_-	N-acetylmuramoyl-L-alanine amidase	A0A240EWQ9	Vibrio_phage	5.5e-19	37.3
WP_069180655.1\|1344450_1345710_-	ParB N-terminal domain-containing protein	A0A1B0RXJ0	Streptococcus_phage	1.4e-102	44.3
WP_069180656.1\|1345801_1346326_+	hypothetical protein	NA	NA	NA	NA
WP_069180657.1\|1346368_1346929_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.6e-53	55.0
WP_069180658.1\|1347041_1347398_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	4.7e-27	48.3
WP_083205775.1\|1347602_1348013_-	sigma-70 family RNA polymerase sigma factor	A0A2K5B275	Erysipelothrix_phage	3.2e-11	32.6
WP_069180659.1\|1348015_1348528_-	DUF4406 domain-containing protein	NA	NA	NA	NA
WP_069180660.1\|1348545_1349013_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7SC39	Paenibacillus_phage	7.5e-33	49.6
WP_069180661.1\|1349169_1351179_-	AAA family ATPase	A0A2I7SC35	Paenibacillus_phage	2.9e-198	48.5
WP_069180662.1\|1351195_1352770_-	DEAD/DEAH box helicase	A0A097BY72	Enterococcus_phage	3.0e-190	61.8
WP_069180663.1\|1352785_1353286_-	hypothetical protein	A0A2I7SC41	Paenibacillus_phage	1.5e-31	49.7
WP_069180664.1\|1353301_1354303_-	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	5.8e-83	44.8
WP_069180665.1\|1354317_1354827_-	siphovirus Gp157 family protein	A0A0P0I392	Lactobacillus_phage	3.1e-16	34.1
WP_069180666.1\|1354804_1355017_-	hypothetical protein	A0A2I4R673	Erysipelothrix_phage	2.0e-09	45.2
WP_069180667.1\|1355096_1355591_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_069180668.1\|1356016_1357030_+	hypothetical protein	NA	NA	NA	NA
WP_069180669.1\|1357022_1357472_+	hypothetical protein	NA	NA	NA	NA
WP_069180670.1\|1357476_1359294_+	AAA family ATPase	NA	NA	NA	NA
WP_069180671.1\|1359306_1359510_+	helix-turn-helix transcriptional regulator	A0A2K5B263	Erysipelothrix_phage	3.4e-22	68.7
WP_069180672.1\|1359771_1361367_+	Eco57I restriction-modification methylase domain-containing protein	NA	NA	NA	NA
WP_069180673.1\|1361366_1362071_+	hypothetical protein	NA	NA	NA	NA
WP_069180674.1\|1362427_1363030_-	hypothetical protein	NA	NA	NA	NA
WP_083205776.1\|1363072_1364146_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_006696188.1\|1364383_1364755_-	cupin domain-containing protein	NA	NA	NA	NA
WP_006696189.1\|1364990_1365899_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.6e-23	29.7
WP_006696190.1\|1365895_1366234_-\|transposase	transposase	NA	NA	NA	NA
WP_081467860.1\|1366294_1366369_-	ATP-binding protein	NA	NA	NA	NA
WP_083205777.1\|1366393_1366990_-	ATP-binding protein	NA	NA	NA	NA
WP_069180675.1\|1367120_1367552_-	WYL domain-containing protein	NA	NA	NA	NA
WP_037359320.1\|1367587_1368199_+	hypothetical protein	NA	NA	NA	NA
WP_069180676.1\|1368314_1369922_-	recombinase family protein	Q6DMS5	Streptococcus_phage	1.3e-140	53.2
WP_069180677.1\|1369906_1371397_-	recombinase family protein	M1NSJ1	Streptococcus_phage	5.1e-75	41.9
WP_009438368.1\|1371431_1371617_-	hypothetical protein	NA	NA	NA	NA
WP_069180678.1\|1371727_1372120_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	2.8e-33	57.3
WP_069180679.1\|1372121_1373195_-	hypothetical protein	NA	NA	NA	NA
WP_083205778.1\|1373199_1373421_-	hypothetical protein	NA	NA	NA	NA
WP_069180680.1\|1373420_1375112_-	hypothetical protein	NA	NA	NA	NA
WP_069180681.1\|1375108_1376026_-	hypothetical protein	NA	NA	NA	NA
WP_069180682.1\|1376036_1376450_-	hypothetical protein	NA	NA	NA	NA
WP_069180683.1\|1376452_1376794_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	NA	NA	NA
WP_069180684.1\|1376765_1379306_-	hypothetical protein	NA	NA	NA	NA
WP_069180685.1\|1379492_1379807_-	hypothetical protein	NA	NA	NA	NA
WP_069180686.1\|1379818_1380418_-\|tail	phage tail protein	A0A1G5SA63	Enterococcus_phage	5.5e-12	29.3
WP_069180687.1\|1380419_1380782_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_069180688.1\|1380778_1381177_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_069180689.1\|1381169_1381508_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_009657058.1\|1381508_1381784_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B0RXK2	Streptococcus_phage	1.2e-14	46.2
WP_069180690.1\|1381858_1383040_-\|capsid	phage major capsid protein	Q6DMU0	Streptococcus_phage	1.2e-98	48.0
WP_069180691.1\|1383056_1383752_-\|protease	Clp protease ClpP	Q6DMU1	Streptococcus_phage	1.5e-69	60.1
WP_069180692.1\|1383741_1384995_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	1.4e-179	75.4
WP_069180693.1\|1385068_1385560_+	hypothetical protein	NA	NA	NA	NA
WP_069180648.1\|1385580_1386564_+	HNH endonuclease	NA	NA	NA	NA
WP_069180649.1\|1386900_1388502_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	2.0e-263	81.9
WP_069181567.1\|1388597_1388876_-	hypothetical protein	NA	NA	NA	NA
WP_069180694.1\|1389036_1389213_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_069180695.1\|1389209_1389446_-	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	8.5e-09	37.0
WP_069180696.1\|1389429_1390260_-	virulence protein	A0A2K5B280	Erysipelothrix_phage	5.8e-44	39.3
WP_069180697.1\|1390378_1390660_-	prevent-host-death protein	NA	NA	NA	NA
WP_069180698.1\|1390662_1391202_-	N-acetylmuramoyl-L-alanine amidase	A0A240EWQ9	Vibrio_phage	1.3e-20	37.3
WP_069180699.1\|1391201_1392467_-	site-specific DNA-methyltransferase	A0A1B0RXJ0	Streptococcus_phage	3.4e-104	45.6
WP_069180700.1\|1392479_1393040_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	2.3e-52	54.5
WP_069180701.1\|1393151_1393508_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	2.7e-27	49.2
WP_069180702.1\|1393636_1394077_-	DUF1492 domain-containing protein	A0A2K5B275	Erysipelothrix_phage	3.1e-12	34.8
WP_069180703.1\|1394073_1394286_-	hypothetical protein	NA	NA	NA	NA
WP_069180704.1\|1394282_1395626_-	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	3.3e-150	59.2
WP_069181569.1\|1395876_1396158_-	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	9.1e-26	60.4
WP_069180706.1\|1396388_1398686_-	hypothetical protein	A0A2K5B271	Erysipelothrix_phage	2.4e-220	50.1
WP_069180707.1\|1398682_1399261_-	hypothetical protein	A0A2I4R669	Erysipelothrix_phage	9.5e-62	60.8
WP_069180708.1\|1399257_1399653_-	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	1.5e-26	44.6
WP_069180709.1\|1399649_1399853_-	hypothetical protein	A0A2K5B269	Erysipelothrix_phage	2.3e-18	59.4
WP_069180710.1\|1400238_1400526_+	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	1.6e-06	51.7
WP_069180711.1\|1400518_1401646_+	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	1.5e-127	59.2
WP_069180712.1\|1401659_1402220_+	DUF2815 family protein	M1PLM6	Streptococcus_phage	3.7e-71	73.9
WP_069180713.1\|1402288_1404238_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	2.8e-262	66.9

DBSCAN-SWA_5

1829117 : 1836575

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069181095.1\|1829117_1829582_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-40	65.1
WP_069181096.1\|1829594_1830212_-	glutamine amidotransferase	NA	NA	NA	NA
WP_069181097.1\|1830229_1831444_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.3e-102	49.0
WP_069181098.1\|1831454_1832090_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	39.2
WP_069181099.1\|1832099_1833203_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.0e-40	34.9
WP_069181100.1\|1833556_1833943_-	dihydroxyacetone kinase	NA	NA	NA	NA
WP_069181101.1\|1833944_1834616_-	TerC family protein	W8EBD0	Pseudomonas_phage	8.0e-28	41.0
WP_069181102.1\|1834625_1836575_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.1e-104	36.1

Anti-CRISPR protein detection

Acr_ID: NZ_CP017042.1|WP_159057709.1|650717_650891_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP017042.1|WP_159057709.1|650717_650891_+|hypothetical-protein

650717_650891_+

57 aa aa

645432-688019

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP017042_1	TypeI	1.5\|992247\|33\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992247-992279	33	666513-666545	0
NZ_CP017042_1	TypeI	1.6\|992313\|35\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992313-992347	35	674545-674511	0
NZ_CP017042_1	TypeI	1.7\|992381\|34\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	992381-992414	34	649629-649596	2
NZ_CP017042_1	TypeI	1.17\|993049\|33\|NZ_CP017042\|PILER-CR,CRISPRCasFinder,CRT	993049-993081	33	687619-687587	1

1. spacer 1.5|992247|33|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017042 position: 666513-666545, mismatch: 0

aagcagtgcaacgaaaagacgatggagacggcg	CRISPR spacer
aagcagtgcaacgaaaagacgatggagacggcg	Protospacer
*********************************

2. spacer 1.6|992313|35|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017042 position: 674545-674511, mismatch: 0

tgcggctcataggactttgtcatcatcaaatccat	CRISPR spacer
tgcggctcataggactttgtcatcatcaaatccat	Protospacer
***********************************

3. spacer 1.7|992381|34|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017042 position: 649629-649596, mismatch: 2

gcctcatatcggcgggacgtgacctgccatcatc	CRISPR spacer
gcctcgtatcggcggaacgtgacctgccatcatc	Protospacer
*****.*********.******************

4. spacer 1.17|993049|33|NZ_CP017042|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017042 position: 687619-687587, mismatch: 1

tgcagtgcctgtgcgttggcgcgtgagatgtcg	CRISPR spacer
tggagtgcctgtgcgttggcgcgtgagatgtcg	Protospacer
** ******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017043

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017042

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information