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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016856 Staphylococcus aureus subsp. aureus strain 2148.N chromosome, complete genome 7 crisprs cas3,WYL,csa3,DEDDh,DinG 3 3 9 0
NZ_CP025481 Staphylococcus aureus subsp. aureus strain 2148.N plasmid p2148.N, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP016856
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_1 291598-291689 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_2 500113-500191 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_3 596515-596592 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_4 1009824-1009926 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_5 1616714-1616847 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_6 1707303-1707400 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016856_7 2213853-2213984 Orphan NA
2 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 1049770-1049801 1 0.969
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 1049825-1049856 1 0.969
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 2364279-2364310 1 0.969
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 59250-59280 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 268831-268861 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 369289-369319 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 761326-761356 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 1049943-1049973 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 1586320-1586350 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 1868269-1868299 1 0.968
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 2540276-2540306 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 59250-59280 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 268831-268861 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 369289-369319 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 761326-761356 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 1049943-1049973 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 1586320-1586350 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 1868269-1868299 1 0.968
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 2540276-2540306 1 0.968
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 590987-591018 2 0.938
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 761380-761411 2 0.938
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 1253897-1253928 2 0.938
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 1535798-1535829 2 0.938
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 1857411-1857442 2 0.938
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 NZ_CP016856.1 2203182-2203213 2 0.938
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 591100-591130 2 0.935
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NZ_CP016856.1 1857352-1857382 2 0.935
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 591100-591130 2 0.935
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NZ_CP016856.1 1857352-1857382 2 0.935

1. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 1049770-1049801, mismatch: 1, identity: 0.969

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaagcaatgcaagt	Protospacer
*********************.**********

2. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 1049825-1049856, mismatch: 1, identity: 0.969

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaagcaatgcaagt	Protospacer
*********************.**********

3. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 2364279-2364310, mismatch: 1, identity: 0.969

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacagacaatgcaagt	Protospacer
********************.***********

4. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 59250-59280, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

5. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 268831-268861, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

6. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 369289-369319, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

7. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 761326-761356, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

8. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 1049943-1049973, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

9. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 1586320-1586350, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

10. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 1868269-1868299, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

11. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 2540276-2540306, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

12. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 59250-59280, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

13. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 268831-268861, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

14. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 369289-369319, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

15. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 761326-761356, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

16. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 1049943-1049973, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

17. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 1586320-1586350, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

18. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 1868269-1868299, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

19. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 2540276-2540306, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

20. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 590987-591018, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

21. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 761380-761411, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

22. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 1253897-1253928, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

23. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 1535798-1535829, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

24. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 1857411-1857442, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcaaaaagaaattctacagacaatgcaagt	Protospacer
****.***************.***********

25. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to position: 2203182-2203213, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaggaaattctacagacaatgcaagt	Protospacer
********.***********.***********

26. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 591100-591130, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agcttacgaaaagtcagcttacaataatgtg	Protospacer
**** *****************.********

27. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to position: 1857352-1857382, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtg	Protospacer
****************** ***.********

28. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 591100-591130, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agcttacgaaaagtcagcttacaataatgtg	Protospacer
**** *****************.********

29. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to position: 1857352-1857382, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtg	Protospacer
****************** ***.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159749-159779 8 0.742
NZ_CP016856_7 7.2|2213937|31|NZ_CP016856|PILER-CR 2213937-2213967 31 LN846932 Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome 10622-10652 8 0.742
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159749-159779 8 0.742
NZ_CP016856_7 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder 2213926-2213956 31 LN846932 Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome 10622-10652 8 0.742
NZ_CP016856_3 3.1|596538|32|NZ_CP016856|CRISPRCasFinder 596538-596569 32 MN693281 Marine virus AFVG_25M371, complete genome 6448-6479 9 0.719

1. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
gcttgacgaaaactcaccttacgataaaatt	Protospacer
. .********* *** ********** .* 

2. spacer 7.2|2213937|31|NZ_CP016856|PILER-CR matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
tgaagacgaaaaatcagattacgataaatta	Protospacer
 *  ********.**** *********  *.

3. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
gcttgacgaaaactcaccttacgataaaatt	Protospacer
. .********* *** ********** .* 

4. spacer 7.3|2213926|31|NZ_CP016856|CRISPRCasFinder matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
tgaagacgaaaaatcagattacgataaatta	Protospacer
 *  ********.**** *********  *.

5. spacer 3.1|596538|32|NZ_CP016856|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 9, identity: 0.719

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
cacttagaagaaatcctacaaacaatgcaaaa	Protospacer
. .. *.*******.***************. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 359419 : 367892 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 383187 : 413782 33 Staphylococcus_phage(25.0%) protease,transposase,bacteriocin NA
DBSCAN-SWA_3 624944 : 639298 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 651269 : 659089 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_5 2097286 : 2169876 93 Staphylococcus_phage(92.86%) holin,protease,integrase,terminase,capsid,transposase,head,portal,tail attL 2109252:2109269|attR 2176540:2176557
DBSCAN-SWA_6 2252601 : 2306235 54 Staphylococcus_phage(90.0%) protease,tRNA,transposase NA
DBSCAN-SWA_7 2311468 : 2343435 34 Staphylococcus_phage(93.33%) protease NA
DBSCAN-SWA_8 2483611 : 2492651 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 2560430 : 2568760 7 Caulobacter_phage(16.67%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage