CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013369	Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence	0 crisprs	PD-DExK,csa3	1
NZ_CP013368	Burkholderia ubonensis strain RF23-BP41 chromosome 3, complete sequence	0 crisprs	PD-DExK	56
NZ_CP013371	Burkholderia ubonensis strain RF23-BP41 chromosome 2, complete sequence	1 crisprs	cas3,csa3,c2c9_V-U4,DinG,WYL	1
NZ_CP013370	Burkholderia ubonensis strain RF23-BP41 chromosome 1, complete sequence	0 crisprs	csa3,cas3,DEDDh,RT,DinG,PrimPol	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4359 : 59456

Stx2-converting_phage(25.0%)

integrase,transposase,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069275252.1\|4359_5922_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.4e-152	54.9
WP_034184982.1\|5951_6299_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_059655039.1\|6295_6703_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	8.9e-14	35.3
WP_088503120.1\|7484_8682_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.6e-98	62.7
WP_155122796.1\|8727_9573_-	hypothetical protein	NA	NA	NA	NA
WP_155122797.1\|9669_10908_-	hypothetical protein	NA	NA	NA	NA
WP_059655043.1\|11446_11803_-	hypothetical protein	NA	NA	NA	NA
WP_059673668.1\|12136_12574_-	hypothetical protein	NA	NA	NA	NA
WP_059655049.1\|12882_13803_-	hypothetical protein	NA	NA	NA	NA
WP_059655051.1\|13864_14521_-	hypothetical protein	NA	NA	NA	NA
WP_059673670.1\|15247_15967_+	hypothetical protein	NA	NA	NA	NA
WP_155122798.1\|17190_17499_-	hypothetical protein	NA	NA	NA	NA
WP_080402154.1\|17502_22017_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.9e-22	34.6
WP_059655055.1\|22032_23298_-	hypothetical protein	NA	NA	NA	NA
WP_059655057.1\|23313_25518_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.2e-43	28.1
WP_059655093.1\|25967_28307_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1G8E2	Mycobacterium_phage	6.5e-08	33.7
WP_059673672.1\|28333_29503_-	hypothetical protein	NA	NA	NA	NA
WP_080402156.1\|29530_29716_-	hypothetical protein	NA	NA	NA	NA
WP_059655063.1\|29772_30708_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_059655095.1\|31377_31623_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_059655065.1\|31612_31912_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_059655067.1\|31962_32319_+	hypothetical protein	NA	NA	NA	NA
WP_059655069.1\|33373_34342_-	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	6.8e-12	35.5
WP_059618340.1\|34338_35547_-	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	1.7e-28	27.4
WP_059655071.1\|36371_37754_+	replication initiation protein	NA	NA	NA	NA
WP_059655073.1\|38396_39398_-	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	7.8e-19	30.9
WP_059655075.1\|39824_41024_-	nucleotidyltransferase	NA	NA	NA	NA
WP_059655076.1\|41144_41495_+	helix-turn-helix transcriptional regulator	S5MCH5	Brevibacillus_phage	4.1e-07	35.2
WP_059655078.1\|41494_42364_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_059655080.1\|42930_43776_+	hypothetical protein	NA	NA	NA	NA
WP_059655082.1\|44311_46435_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_155122799.1\|47211_47838_+	hypothetical protein	NA	NA	NA	NA
WP_059655086.1\|48210_50172_-	transcriptional regulator	NA	NA	NA	NA
WP_059636632.1\|51675_52131_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_059636629.1\|52127_54518_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_059636627.1\|54536_55268_-	molecular chaperone	NA	NA	NA	NA
WP_080400280.1\|55271_55853_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_080402854.1\|56663_57926_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_155122800.1\|58108_58285_+	hypothetical protein	NA	NA	NA	NA
WP_088503032.1\|58257_59456_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.0e-50	39.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013368

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 13091

Burkholderia_virus(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657207.1\|216_2361_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_059617294.1\|2852_3869_+	depolymerase	NA	NA	NA	NA
WP_059657205.1\|3922_4474_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.2e-08	38.1
WP_059617298.1\|4609_7156_-	EAL domain-containing protein	G3MA91	Bacillus_virus	5.0e-22	35.4
WP_059609962.1\|7935_8841_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.0e-131	77.2
WP_059609963.1\|8973_10260_+	MFS transporter	Q6JIH2	Burkholderia_virus	6.6e-172	71.7
WP_059609964.1\|10332_10668_+	H-NS histone family protein	NA	NA	NA	NA
WP_059657257.1\|10909_11995_-	mandelate racemase	NA	NA	NA	NA
WP_059657203.1\|12023_13091_-	hypothetical protein	A0A127KL69	Cyanophage	3.1e-05	35.2

DBSCAN-SWA_2

19463 : 20366

Orpheovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657193.1\|19463_20366_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	3.6e-23	30.7

DBSCAN-SWA_3

25709 : 27560

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059609978.1\|25709_27560_-	carbamoyltransferase	A0A1B1ITZ5	uncultured_Mediterranean_phage	3.2e-58	30.6

DBSCAN-SWA_4

38765 : 39497

Organic_Lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059609987.1\|38765_39497_+	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	2.1e-05	24.9

DBSCAN-SWA_5

47045 : 47792

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657162.1\|47045_47792_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.5e-06	29.1

DBSCAN-SWA_6

83503 : 85138

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657112.1\|83503_85138_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-18	34.1

DBSCAN-SWA_7

89229 : 91980

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657105.1\|89229_91980_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.0e-36	25.7

DBSCAN-SWA_8

99788 : 102277

Diadromus_pulchellus_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059535449.1\|99788_100556_-	3-hydroxyacyl-CoA dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	8.3e-05	30.4
WP_059657101.1\|100570_102277_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	6.7e-79	38.8

DBSCAN-SWA_9

117273 : 118044

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059610072.1\|117273_118044_-	DNA-binding transcriptional repressor DeoR	A0A077SK06	Escherichia_phage	2.4e-20	30.6

DBSCAN-SWA_10

136827 : 138465

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655569.1\|136827_138465_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.7e-34	30.2

DBSCAN-SWA_11

141571 : 144120

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059614129.1\|141571_142444_+	class I SAM-dependent methyltransferase	A0A2K9L0U7	Tupanvirus	4.4e-26	30.6
WP_059614127.1\|142440_142902_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_059614125.1\|142904_143168_+	acyl carrier protein	NA	NA	NA	NA
WP_059614123.1\|143154_144120_+	acyl-CoA desaturase	V5LQE2	Emiliania_huxleyi_virus	3.5e-24	32.4

DBSCAN-SWA_12

148596 : 149331

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059609215.1\|148596_149331_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.3e-34	34.5

DBSCAN-SWA_13

152473 : 160047

Bacillus_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655576.1\|152473_153166_-	OmpA family protein	G3M9Z0	Bacillus_virus	1.8e-06	38.6
WP_080402184.1\|153255_157701_-	hypothetical protein	A0A2C9CZB7	Yersinia_phage	5.5e-08	42.4
WP_155122770.1\|157903_158107_-	hypothetical protein	NA	NA	NA	NA
WP_059613748.1\|158843_159422_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.6e-37	47.7
WP_059613746.1\|159477_160047_-	recombinase family protein	A0A0C4UR34	Shigella_phage	5.4e-41	55.1

DBSCAN-SWA_14

165518 : 166253

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059613736.1\|165518_166253_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-30	37.8

DBSCAN-SWA_15

182889 : 190717

Staphylococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059652350.1\|182889_183618_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.6e-21	32.4
WP_059652379.1\|183719_184799_-	HAF repeat-containing protein	NA	NA	NA	NA
WP_059652376.1\|185232_186267_-	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	2.6e-33	33.3
WP_059652348.1\|187467_188355_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.9e-05	41.7
WP_059652345.1\|188494_189748_+	MFS transporter	NA	NA	NA	NA
WP_059652341.1\|189766_190717_-	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	1.9e-06	38.6

DBSCAN-SWA_16

207702 : 213843

Bacillus_thuringiensis_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059652318.1\|207702_209082_-	sigma-54-dependent Fis family transcriptional regulator	Q56AR1	Bacillus_thuringiensis_phage	8.2e-11	32.9
WP_059652315.1\|209063_210563_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	6.0e-07	24.2
WP_059615610.1\|211087_212287_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_059652312.1\|212283_213843_-	D-xylose ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-09	25.0

DBSCAN-SWA_17

223561 : 228739

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069275246.1\|223561_225016_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.4e-15	24.9
WP_059652298.1\|225077_226040_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_059652291.1\|226276_227020_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_059652289.1\|227215_228739_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	1.0e-14	26.7

DBSCAN-SWA_18

239953 : 247114

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080402091.1\|239953_247114_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.7e-28	32.1

DBSCAN-SWA_19

253537 : 263324

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059652262.1\|253537_261541_-	type I polyketide synthase	A0A2K9KZV5	Tupanvirus	3.3e-67	27.4
WP_059652259.1\|261560_263324_-	carbamoyltransferase	M1ICZ5	Pelagibacter_phage	5.0e-45	29.8

DBSCAN-SWA_20

278187 : 279507

Geobacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059652233.1\|278187_279507_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	4.7e-72	39.9

DBSCAN-SWA_21

303526 : 304051

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655682.1\|303526_304051_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.5e-45	54.9

DBSCAN-SWA_22

321029 : 322328

Megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655666.1\|321029_322328_-	adenylosuccinate synthase	K7YXK1	Megavirus	4.2e-57	34.0

DBSCAN-SWA_23

328028 : 328724

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059616760.1\|328028_328724_-	ParA family protein	D4HTX7	Vibrio_phage	1.3e-20	31.4

DBSCAN-SWA_24

336830 : 338960

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059616809.1\|336830_338960_+	TonB-dependent siderophore receptor	A0A1B0VCF0	Salmonella_phage	3.7e-10	27.5

DBSCAN-SWA_25

367494 : 369339

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059616705.1\|367494_369339_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.2e-27	26.1

DBSCAN-SWA_26

376740 : 377511

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059619556.1\|376740_377511_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.9e-07	27.5

DBSCAN-SWA_27

383503 : 386704

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059673603.1\|383503_386704_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.6e-41	22.0

DBSCAN-SWA_28

392316 : 393504

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059615525.1\|392316_393504_-	TIGR03118 family protein	A0A1V0S9B1	Catovirus	1.1e-24	28.0

DBSCAN-SWA_29

398362 : 400927

Tupanvirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657403.1\|398362_400927_+\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	3.4e-151	35.3

DBSCAN-SWA_30

410629 : 412588

Microcystis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657392.1\|410629_412588_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BUR2	Microcystis_phage	9.5e-21	33.5

DBSCAN-SWA_31

419767 : 422839

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657387.1\|419767_422839_+	cyclic nucleotide-binding domain-containing protein	W8CYL7	Bacillus_phage	4.5e-41	28.0

DBSCAN-SWA_32

427138 : 429709

Cedratvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657382.1\|427138_429229_+	protein kinase	A0A1M7XUH0	Cedratvirus	1.5e-11	25.4
WP_059657380.1\|429250_429709_-	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	8.5e-05	30.8

DBSCAN-SWA_33

433640 : 474651

Tupanvirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657378.1\|433640_435344_-	cyclic peptide export ABC transporter	F2Y1V5	Organic_Lake_phycodnavirus	9.2e-12	27.9
WP_059615455.1\|435357_435888_-	hypothetical protein	NA	NA	NA	NA
WP_059615569.1\|435936_436416_-	hypothetical protein	NA	NA	NA	NA
WP_059657376.1\|436469_437126_-	glycosyltransferase family 25 protein	A0A218MMA0	uncultured_virus	1.8e-24	30.1
WP_059657374.1\|437122_446620_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.8e-157	27.0
WP_080402262.1\|446644_455725_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	8.2e-75	20.6
WP_059657370.1\|455721_459636_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.0e-69	30.5
WP_059657368.1\|459623_461240_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_059657366.1\|461250_474651_-	hybrid non-ribosomal peptide synthetase/type I polyketide synthase	A0A2K9KZV5	Tupanvirus	6.6e-97	26.7

DBSCAN-SWA_34

477967 : 486104

Paenibacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657362.1\|477967_482389_-	AMP-binding protein	D0R7J2	Paenibacillus_phage	1.9e-32	33.7
WP_059657361.1\|482646_483609_-	taurine catabolism dioxygenase TauD	NA	NA	NA	NA
WP_059657359.1\|483692_485003_-	diaminobutyrate--2-oxoglutarate transaminase family protein	A0A1V0SKB7	Klosneuvirus	5.8e-22	24.9
WP_059617616.1\|485153_486104_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	9.5e-83	47.9

DBSCAN-SWA_35

491750 : 494850

Megavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155122779.1\|491750_492992_+	hypothetical protein	L7XZI3	Megavirus	1.2e-13	27.3
WP_059657354.1\|493056_494850_+	carbamoyltransferase	E3SL71	Synechococcus_phage	1.5e-44	32.3

DBSCAN-SWA_36

507334 : 550749

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080402261.1\|507334_514051_+	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.0e-29	27.7
WP_059657348.1\|514111_519421_+	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	9.5e-23	28.8
WP_059657346.1\|519420_525438_+	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.2e-26	32.5
WP_059657345.1\|525437_534395_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	9.1e-26	31.9
WP_059657344.1\|534405_543375_+	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	5.5e-31	32.2
WP_059657342.1\|543399_550749_+	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.0e-30	32.2

DBSCAN-SWA_37

558534 : 558882

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010098558.1\|558534_558882_-	GIY-YIG nuclease family protein	A0A076G735	Bacillus_phage	5.2e-07	44.1

DBSCAN-SWA_38

571160 : 575641

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059615352.1\|571160_573482_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.7e-16	35.5
WP_059615349.1\|573508_575641_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	7.0e-09	28.7

DBSCAN-SWA_39

600734 : 684664

Bacillus_phage(21.43%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059617666.1\|600734_602081_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_088500724.1\|602108_602621_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_010088970.1\|602711_603197_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_059615314.1\|603303_604797_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_059615312.1\|604830_605385_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_059657303.1\|605418_608172_-	type VI secretion system ATPase TssH	A0A1C3S747	Escherichia_phage	1.4e-86	33.0
WP_059657301.1\|608812_609478_+	TagK domain-containing protein	NA	NA	NA	NA
WP_059617671.1\|609503_610085_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059657299.1\|610137_612027_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059657409.1\|612029_613133_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_088503020.1\|613195_614212_+	type VI secretion protein ImpA	NA	NA	NA	NA
WP_059657294.1\|614283_616575_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.4e-41	29.5
WP_059657292.1\|616588_619036_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_059657290.1\|619032_620115_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_088503019.1\|620211_620823_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_059617683.1\|620835_621219_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_059615293.1\|621581_621815_+	hypothetical protein	NA	NA	NA	NA
WP_155122784.1\|621818_623129_+	hypothetical protein	NA	NA	NA	NA
WP_059617688.1\|623139_623955_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_059615288.1\|624172_624703_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_059657284.1\|624789_625347_+	sugar O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	7.1e-06	32.0
WP_059615284.1\|625490_626816_+	hypothetical protein	NA	NA	NA	NA
WP_059657282.1\|626815_628387_+	hypothetical protein	NA	NA	NA	NA
WP_059615281.1\|628383_629475_+	AAA domain-containing protein	NA	NA	NA	NA
WP_059657280.1\|629474_631730_+	hypothetical protein	NA	NA	NA	NA
WP_059617701.1\|631757_632918_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	2.2e-41	33.2
WP_059615553.1\|632936_633158_-	hypothetical protein	NA	NA	NA	NA
WP_088503018.1\|633208_633958_-	spermidine synthase	NA	NA	NA	NA
WP_059615273.1\|634026_634290_-	phosphate ABC transporter permease	NA	NA	NA	NA
WP_059657277.1\|634291_634741_-	hypothetical protein	NA	NA	NA	NA
WP_059615551.1\|634934_635279_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_059657275.1\|635333_636176_+	hypothetical protein	NA	NA	NA	NA
WP_010097212.1\|636201_636387_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_059615267.1\|636493_637261_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_059657273.1\|637488_639495_+	hydrogenase 4 subunit B	NA	NA	NA	NA
WP_059657271.1\|639488_640439_+	formate hydrogenlyase	NA	NA	NA	NA
WP_010097204.1\|640439_641099_+	formate hydrogenlyase	NA	NA	NA	NA
WP_059615261.1\|641091_642564_+	hydrogenase 4 subunit F	NA	NA	NA	NA
WP_059657270.1\|642567_644127_+	hydrogenase	NA	NA	NA	NA
WP_059617714.1\|644126_644636_+	formate hydrogenlyase	NA	NA	NA	NA
WP_059657268.1\|644720_645065_+	hypothetical protein	NA	NA	NA	NA
WP_059657266.1\|645067_645280_+	twin transmembrane helix small protein	NA	NA	NA	NA
WP_124470467.1\|645458_646145_+	hypothetical protein	NA	NA	NA	NA
WP_059615251.1\|646330_646957_-	hypothetical protein	NA	NA	NA	NA
WP_059657265.1\|647179_649117_-	hypothetical protein	NA	NA	NA	NA
WP_059615247.1\|649360_650509_+	porin	NA	NA	NA	NA
WP_059592756.1\|650830_652063_+	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha	NA	NA	NA	NA
WP_059657264.1\|652065_653109_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_059615240.1\|653110_654421_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_059657263.1\|654426_655818_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.7e-43	27.3
WP_080484886.1\|656771_657866_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_059655101.1\|657997_660721_+	hypothetical protein	NA	NA	NA	NA
WP_059655099.1\|660720_663438_+	hypothetical protein	NA	NA	NA	NA
WP_080402849.1\|663913_665176_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_059655105.1\|665394_671286_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-190	38.3
WP_059655107.1\|671355_672762_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.6e-24	40.1
WP_088501358.1\|673234_674149_+	acyl-CoA desaturase	F2NZ38	Diadromus_pulchellus_ascovirus	1.9e-19	29.9
WP_059632028.1\|674174_674459_+	acyl carrier protein	NA	NA	NA	NA
WP_059655109.1\|674471_675404_+	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	7.2e-27	30.3
WP_059655111.1\|675400_676408_+	acyl-CoA desaturase	A0A1B1IX11	uncultured_Mediterranean_phage	2.4e-07	25.8
WP_059655113.1\|676447_677434_+	amidohydrolase	NA	NA	NA	NA
WP_059655120.1\|677430_679248_+	fatty acyl-AMP ligase	A0A2K9L3I8	Tupanvirus	1.4e-05	22.0
WP_059615214.1\|679261_679681_+	PaaI family thioesterase	NA	NA	NA	NA
WP_059655122.1\|679687_680659_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_059655124.1\|680750_682343_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	3.0e-17	26.8
WP_080402160.1\|682824_683535_-	UdgX family uracil-DNA binding protein	A0A127AW33	Bacillus_phage	1.6e-10	29.1
WP_059617766.1\|683643_684138_-	PRC-barrel domain containing protein	NA	NA	NA	NA
WP_059632016.1\|684229_684664_-	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	4.7e-13	36.4

DBSCAN-SWA_40

689983 : 690532

Yellowstone_lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059617929.1\|689983_690532_+	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	1.6e-18	36.3

DBSCAN-SWA_41

701319 : 703191

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655148.1\|701319_703191_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.0e-15	30.7

DBSCAN-SWA_42

721697 : 723125

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655170.1\|721697_723125_-	MHS family MFS transporter	Q6JIH2	Burkholderia_virus	9.3e-34	28.9

DBSCAN-SWA_43

728726 : 730573

uncultured_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655178.1\|728726_728960_+	molecular chaperone	A0A219YK71	uncultured_virus	3.2e-08	49.2
WP_059655180.1\|729069_729324_+	hypothetical protein	NA	NA	NA	NA
WP_155122786.1\|729409_729805_+	hypothetical protein	NA	NA	NA	NA
WP_059617836.1\|730009_730573_-	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	4.7e-13	32.3

DBSCAN-SWA_44

743279 : 749143

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059617862.1\|743279_746057_+	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	5.5e-22	30.4
WP_059617864.1\|746058_747171_+	ABC transporter permease	NA	NA	NA	NA
WP_059617933.1\|747225_748374_+	ABC transporter permease	NA	NA	NA	NA
WP_059655204.1\|748378_749143_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.7e-19	31.3

DBSCAN-SWA_45

765107 : 771863

Orpheovirus(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063803182.1\|765107_766382_-\|tRNA	aspartate--tRNA(Asn) ligase	A0A2I2L4Y8	Orpheovirus	9.4e-62	35.6
WP_059655221.1\|767307_767811_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-42	53.0
WP_059615101.1\|767903_768923_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	5.0e-21	27.5
WP_059615099.1\|769051_770449_+	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
WP_063803183.1\|770450_771863_+	glycoside hydrolase family 32 protein	S6ATV4	Bacillus_phage	1.3e-22	26.8

DBSCAN-SWA_46

775816 : 778347

Cyanophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059617895.1\|775816_777292_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.1e-73	34.6
WP_059655228.1\|777969_778347_-	hypothetical protein	A0A0K2QQ09	Ralstonia_phage	2.2e-30	58.5

DBSCAN-SWA_47

781819 : 789185

Ralstonia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059655233.1\|781819_782728_+	hypothetical protein	A0JC28	Ralstonia_phage	1.8e-27	32.7
WP_059655235.1\|782724_784107_+	type II secretory pathway protein	R9TEZ5	Vibrio_phage	7.0e-10	25.9
WP_059655237.1\|784598_785381_+	hypothetical protein	A0A1W5LU59	Ralstonia_phage	1.0e-34	41.4
WP_059655250.1\|785418_785655_+	hypothetical protein	NA	NA	NA	NA
WP_059655249.1\|785651_785939_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_059615582.1\|788342_789185_-	alpha/beta hydrolase	A0A0A0RRH5	Mycobacterium_phage	5.2e-08	32.8

DBSCAN-SWA_48

792925 : 805050

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080402242.1\|792925_800563_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.2e-156	27.1
WP_059615590.1\|800629_801808_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_059657024.1\|801864_805050_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.3e-56	22.2

DBSCAN-SWA_49

813675 : 815445

Feldmannia_species_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657019.1\|813675_815445_-	histidine kinase	B5LWN8	Feldmannia_species_virus	7.8e-06	26.4

DBSCAN-SWA_50

824283 : 832611

Diadromus_pulchellus_ascovirus(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657008.1\|824283_825027_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	5.4e-17	32.5
WP_059657006.1\|825148_826057_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059657004.1\|826099_826831_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.2e-08	23.9
WP_059657033.1\|826832_827852_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-17	35.1
WP_155122791.1\|828091_828631_-	hypothetical protein	NA	NA	NA	NA
WP_059657000.1\|828836_829376_+	hypothetical protein	NA	NA	NA	NA
WP_059656998.1\|829391_830267_-	SDR family NAD(P)-dependent oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	8.6e-06	29.4
WP_059534493.1\|830362_830941_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_059615633.1\|831135_832611_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	9.5e-74	34.4

DBSCAN-SWA_51

846011 : 851005

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059656986.1\|846011_847343_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.5e-28	38.5
WP_059656984.1\|847365_849099_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_059656982.1\|849370_851005_+	chaperonin GroEL	A0A240F779	uncultured_virus	4.8e-127	47.3

DBSCAN-SWA_52

855001 : 862410

Loktanella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059656977.1\|855001_856804_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	M4QT32	Loktanella_phage	4.6e-94	38.7
WP_059673621.1\|856826_858755_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	6.3e-102	43.5
WP_059610201.1\|858778_859426_-	BON domain-containing protein	NA	NA	NA	NA
WP_059610202.1\|859459_860110_-	BON domain-containing protein	NA	NA	NA	NA
WP_059617217.1\|860352_860544_+	DUF2964 domain-containing protein	NA	NA	NA	NA
WP_059610204.1\|860572_861709_+	ABC transporter permease	NA	NA	NA	NA
WP_059610205.1\|861711_862410_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-38	40.0

DBSCAN-SWA_53

868080 : 873345

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657242.1\|868080_869121_-	zinc-dependent alcohol dehydrogenase family protein	E3SJ82	Synechococcus_phage	5.4e-15	26.5
WP_088503044.1\|869218_870994_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_059657241.1\|871044_871791_-	acetoacetyl-CoA reductase	A0A0K0KVL6	Prochlorococcus_phage	1.6e-05	25.5
WP_059657240.1\|871780_872317_-	hypothetical protein	NA	NA	NA	NA
WP_059657239.1\|872505_873345_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.3e-06	25.9

DBSCAN-SWA_54

879750 : 889303

Enterococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059610221.1\|879750_880398_-	LemA family protein	A0A0C5K8T5	Enterococcus_phage	8.9e-08	27.5
WP_080402255.1\|880633_880822_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_080402254.1\|880899_883068_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.4e-83	35.6
WP_155122792.1\|883282_883453_-	hypothetical protein	NA	NA	NA	NA
WP_059610222.1\|883454_884021_+	hypothetical protein	NA	NA	NA	NA
WP_059635107.1\|884022_884451_+	hypothetical protein	NA	NA	NA	NA
WP_059610224.1\|884879_885653_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_059657233.1\|885728_886718_-	zinc-dependent alcohol dehydrogenase family protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	5.0e-18	30.3
WP_059657232.1\|886914_887916_+	nitroreductase	NA	NA	NA	NA
WP_059617251.1\|887949_888285_+	hypothetical protein	NA	NA	NA	NA
WP_059657231.1\|888298_889303_+	TIGR00730 family Rossman fold protein	F4YCQ1	Synechococcus_phage	3.9e-10	36.2

DBSCAN-SWA_55

899585 : 903296

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657228.1\|899585_903296_-	response regulator	A0A1V0SGX0	Hokovirus	3.3e-62	31.2

DBSCAN-SWA_56

907646 : 913016

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059657225.1\|907646_909938_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-50	28.3
WP_059657223.1\|910174_910783_+	hypothetical protein	NA	NA	NA	NA
WP_059657222.1\|910906_912169_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_059657220.1\|912251_913016_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.7e-19	31.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013371_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013371_1

2288011-2288106

Orphan

Consensus_repeat	Method
CGACACGCCGCCGTTGATCGTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013371_1

>merge|NZ_CP013371|1|2288011-2288106|CRISPRCasFinder
CGACACGCCGCCGTTGATCGTGCCCGAGTTGGTAAACGTATTGCCCTGCCCGGGCGTGCCGTTCGAGCCGAACGACACGCGGCCGTTGATCGTGCC

>NZ_CP013371|1|1|2288011-2288106|CRISPRCasFinder
CGACACGCCGCCGTTGATCGTGCC	CGAGTTGGTAAACGTATTGCCCTGCCCGGGCGTGCCGTTCGAGCCGAA
CGACACGCGGCCGTTGATCGTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013371.1\|WP_059609859.1\|2280713_2282933_-\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
NZ_CP013371.1\|WP_059609598.1\|2296995_2297715_-\|response-regulator	unknown	unknown	gnl\|CDD\|236738
NZ_CP013371.1\|WP_059481557.1\|2275121_2275784_+\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP013371.1\|WP_059611347.1\|2271102_2271963_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|379346
NZ_CP013371.1\|WP_059610190.1\|2273003_2273357_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP013371.1\|WP_059713651.1\|2289320_2289980_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP013371.1\|WP_059610189.1\|2272087_2272948_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP013371.1\|WP_059656489.1\|2296101_2296482_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013371.1\|WP_059656487.1\|2293909_2295040_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP013371.1\|WP_059609599.1\|2297938_2298853_+\|glutaminase	unknown	unknown	gnl\|CDD\|234880
NZ_CP013371.1\|WP_059656481.1\|2274698_2275028_+\|DUF1016-family-protein	unknown	unknown	gnl\|CDD\|377634
NZ_CP013371.1\|WP_155122985.1\|2298989_2299592_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013371.1\|WP_059637122.1\|2277949_2278843_-\|PenA-family-class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP013371.1\|WP_080402217.1\|2295585_2295969_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NZ_CP013371.1\|WP_059656483.1\|2275780_2277151_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182388
NZ_CP013371.1\|WP_059611356.1\|2278957_2279848_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176176
NZ_CP013371.1\|WP_059609595.1\|2291498_2293877_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|132844
NZ_CP013371.1\|WP_059609591.1\|2280355_2280607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013371.1\|WP_059609597.1\|2296487_2296844_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013371.1\|WP_059609594.1\|2290207_2291242_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564

Protein	Function_ID	Function_description	E-value
NZ_CP013371.1\|WP_059609859.1\|2280713_2282933_-\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	3.0671e-120
NZ_CP013371.1\|WP_059609598.1\|2296995_2297715_-\|response-regulator	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	1.357e-82
NZ_CP013371.1\|WP_059481557.1\|2275121_2275784_+\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	5.95653e-84
NZ_CP013371.1\|WP_059609594.1\|2290207_2291242_-\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	3.43677e-159
NZ_CP013371.1\|WP_059610190.1\|2273003_2273357_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	1.30937e-24
NZ_CP013371.1\|WP_059713651.1\|2289320_2289980_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.15862e-31
NZ_CP013371.1\|WP_059656487.1\|2293909_2295040_-\|sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	4.75493e-70
NZ_CP013371.1\|WP_059609599.1\|2297938_2298853_+\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP013371.1\|WP_059656481.1\|2274698_2275028_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	2.54336e-47
NZ_CP013371.1\|WP_059637122.1\|2277949_2278843_-\|PenA-family-class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	3.43539e-75
NZ_CP013371.1\|WP_080402217.1\|2295585_2295969_+\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	2.37752e-08
NZ_CP013371.1\|WP_059656483.1\|2275780_2277151_+\|HAMP-domain-containing-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	2.55258e-67
NZ_CP013371.1\|WP_059611356.1\|2278957_2279848_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176176	cd08487, PBP2_BlaA, The C-terminal substrate-binding domain of LysR-type trnascriptional regulator BlaA which involved in control of the beta-lactamase gene expression; contains the type 2 periplasmic binding fold. This CD represents the C-terminal substrate binding domain of LysR-type transcriptional regulator, BlaA, that involved in control of the expression of beta-lactamase genes, blaA and blaB. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. The blaA gene is located just upstream of blaB in the opposite direction and regulates the expression of the blaB. BlaA also negatively auto-regulates the expression of its own gene, blaA. BlaA (a constitutive class A penicllinase) belongs to the LysR family of transcriptional regulators, whereas BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin binding protein but it does not act as a beta-lactamase. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.23645e-119
NZ_CP013371.1\|WP_059609595.1\|2291498_2293877_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	5.13185e-59
NZ_CP013371.1\|WP_059610189.1\|2272087_2272948_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.43136e-47
NZ_CP013371.1\|WP_059611347.1\|2271102_2271963_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|379346	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold.	2.42476e-85

>NZ_CP013371.1|WP_059609859.1|2280713_2282933_-|amylo-alpha-1,6-glucosidase
MPNHADETTTRAPQVAPVPPTQASGPAFIAPEADPQADARNNQYVLKAGDAFVVSDALGDVSGHDDGLFVDDMRVLSKWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRVLANNVLYEALTLTNYGASEAEVPLSLSFAADFKDMFEVRGTHRARRGTIAQPRIDAGAVRLRYDGLDRVERAVTVNFSPAPDALSVDRADYRLTIAAQACVSIYLTVEATVGAARGETPGCGRAALRTALVAVHRAMRARRATMARVRTGNPLFNAWLDRSLADLGLLTTQLDTGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAAHQARETSAFRDAEPGKIMHEFRKSEMAATGEVPFALYYGGVDTTPLFVVLAGAYVEHTGDDALIDELWPALERAIQWVSDKCDRNPYGLLDYQRTSERGLANQGWKDSHDSVFHADGRFPDGPIALVEVQAYACAAFDAMSACSQRRGHAADATRYALRARALREQVEALFWMPDANFYGIAVDGHGELCRVLASNAGHLLAFGLPDPARGAAVADALGSTLFQTGWGVRTLAAGQPRFNPMAYHNGSVWPHDNALAARGLARYGDKAAVLNLLRSLFEAAVSFEMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGVSVDAARHEVRVERPALPEGVDWLRIDDLRVGDDSVSLTFRRVDGQVVAAAEPGRVKVVAVL
>NZ_CP013371.1|WP_059609591.1|2280355_2280607_-|hypothetical-protein
MTTDKRPDDSEQKLEHLEAAVNHLHESIESQSIAVGAAKGILFSLIETLGALIGDPDLPEHARSGYEALRDKARDLRGSLDKH
>NZ_CP013371.1|WP_059611356.1|2278957_2279848_+|LysR-family-transcriptional-regulator
MTKLRPHLPLNALRAFESSARHLNFTRAGLELSVTQAAVSQQVRALEERLGCTLFTRLPRGLGLTDEGRALLPVLSDAFSRIETVLKQFDGGRFHEVLSIGVVGTFALGWLMPRLKRFGDVHPFVELRLRTNNNVVDLAAEGLDFAIRFGVGNWPATRNERLLDAPLTALCTPEIAARVAQPADLANETQLRSYRTDEWLGWFEAAQLEPWPVNGPVFDSSRLMVEAAMQGAGVALAPACMFTRELQLGLLARPFDIDVHAGGYWLTSLKSKPLTPAMTLFRDWIASEAAGAAPVE
>NZ_CP013371.1|WP_059637122.1|2277949_2278843_-|PenA-family-class-A-beta-lactamase
MTYSSQRRTLLLAAATAPLALTLSACASPRANASSVGSATSLAELERAAGGRLGVHALDTATGRRVQHRADERFPFCSTFKAILIAAVLAESVARPALFAQRVTYRQADLLEWSPVTEKHVDTGMTVGELCEATAQYSDNAAANLLMKLLGGPAAVTAFARSIGDETFRLDRWEPELNTALPGDARDTTTPAAMAASLRALALGDALPAPQRAQYAQWLRGNKTGDKRIRAGVPTGWQVGDKTGTGDYGTINDIGVLWPPARGPIVLTVYYTQARADAKRKDDVIAAATRIAIAALG
>NZ_CP013371.1|WP_059656483.1|2275780_2277151_+|HAMP-domain-containing-protein
MTGLRRALMRWRGASLRRRLLFWLLPTACVIGLLASAGTYWGALRELDDLLDDQMRSMTKQIVVGPNGELSFSSDARGKHHFKVDDPDAVLLQVWRNGTLVYSTDRDLTLPPPAQAGIASVDVGGQSWRTYVTERGGTTIRVAQARHARWEAIAGIAVHLLWPVLSMLPVLAIGLWFGIGAGLRPLRLIAAGLKRRNANNLEPVDVASMPNEVRPLAEAINDLLARLDRSFTLQRHFIADAAHELRTPIMGLSIQSQLLRRAATPDERERILAQIHAGTTRLGHLAEQLLTLARIEPDAHTAAFAPVDLAALCRSVVADRARVADAHRVDLGAIGASPVTVAGNADTLRVLLNNLVDNAIRYAGDGACIDVSARVDGATPVLEVSDDGPGIPEAERADVWERFYRGAGAQAATSSGSGLGLSIVKRIAEQHRATVTLGTSAGGHGLTVTVRFNAPA
>NZ_CP013371.1|WP_059481557.1|2275121_2275784_+|response-regulator
MRVLLVEDDPLIGSGLEHGLKQEGFAVDWVKDGDAASLALRTTGYGLLLLDLGLPNRDGLSVLAALRRRDENLPAIVITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHAGRAQTTLAVGPLRLDPVKHLVWLDDAEVTLSPKEFVLLHELMREPGAVISREQFEERLYSWGEEIESNAVQVHIHNLRKKLGHDMIRTVRGVGYRIGDAA
>NZ_CP013371.1|WP_059656481.1|2274698_2275028_+|DUF1016-family-protein
MFYHLKLRCYVVVELKATPFRPDYAGQLNFYLSAVDAQLRAPQDQPTIGLLLCREKNRLVAEYALRGMANPMGVAEYQLLRQIPASLESGLPSIDRIEAELGPDLPAAE
>NZ_CP013371.1|WP_059610190.1|2273003_2273357_-|NirD/YgiW/YdeI-family-stress-tolerance-protein
MKQLARILTIALAALPAAVYAQYTGPSTLTTTTVKELLANGKDDQHVQLQGRIVKHVGGEDYEFADATGTIRVEIDDKLWAGGQPVSDKSEVKLTGEFERKWSGRVKVDADRIDVVR
>NZ_CP013371.1|WP_059610189.1|2272087_2272948_-|MurR/RpiR-family-transcriptional-regulator
MAANFDELASRIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKVAQRAQVQPASLVRLAQQFGFPGWNELRDLCVARVRTRPEPLTQRARSLVRPDAKASLAHDLLAAQQHNLAATAAQNAQALADAAKLIRKASHVHVAGFRSCYPVAFGLVYGYRLFRPTVSLLAGVAGSLEMELRSIAKHSATVIVSFAPYSAEATRVAQAARAQGSRIVAITDSAVSPIALHADAQLIFTHDSPSFFPSLVAAHALAEALVAQLLALEGGDAIAALERAEAELHAKGAYVV
>NZ_CP013371.1|WP_059611347.1|2271102_2271963_-|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MTHPDLQSRHAHAFRALHAQPGAFILPNPWDAGTARLLAMAGFHALATTSAGYAYARGLPDNAVGRDAMLAHIAEIVAAGGLPVSADLENGFGDAPDTVAETIRLAAGAGAVGGSIEDATGRPDAPIYPHDAAVERIVAAVAAARALPFPFTLTARCENYLHGRRDLADTIARLVAYRDAGADVLYAPGLTDPDEIAELTRAVDAPVNVVMGLQGVSLSVDALAALGVKRVSVGSALARAALGAFLRGATEMMRDGTFSFANAAIPSRQLDRWFAAENNLPLSFEN
>NZ_CP013371.1|WP_059713651.1|2289320_2289980_-|YdcF-family-protein
MKQARNRGIIGRVGRACALVACVWLLCAVGLAVSGLRVPGEAADVAVIFGNALDAQGAPKPVLAARLDVGVRCHQAGRCPVIFVSGAIDGPALDEAAAMRAYLVARGVPADRIVVDDQGDNTLATAQHALAYLRAQRATRVLLVSQYYHLARARLAFERAGAGDVRIYAAYPRQFQLRDLYSSWREVPAYAVYAIRLWLDPDARPVSFRPMLFLRTLFS
>NZ_CP013371.1|WP_059609594.1|2290207_2291242_-|rod-shape-determining-protein
MPTPLFGKLFAHPVAIDPGTATTRIYTHDRGVVLNQPSVICYRKPGGAVARQTLEAVGERAKALLGREPIHLEAVRPLQHGVIADAHAAEQMIRHFIDMSRTRSRFGRRVEVALCVPSSATAVERHALSEAALAAGAASVTLVDEALAAAFGAGLPVTDAIGSLVVDIGGGTTEVAVVALGGVVYREAIRIGGEQFDAAIISHVRALYGVQLGEQTAEHVKKTIGTASAGVPRETMRVVGRSAVDGLPRTIELSNHDVADALAAPLNAVVSAVKRTLENAPPELVTDIADCGIVLTGGGSLLANLGKRLRDETGLAVRVADDPLTCAVRGAAAAMGRVPMRAAA
>NZ_CP013371.1|WP_059609595.1|2291498_2293877_+|BamA/TamA-family-outer-membrane-protein
MTAPDSYRWRWVRRLSPMLAALWCCAAIAQPVPAAGEAAAPDAAALPNASHACRPDGGPAGRPAVGLVLSGGGARGYAHLGVLKVLEENRIPIDCIAATSMGAVVGGLYASGMAAAEMQKRLSETNLADIAFDAIERADLPQSRREDERLYASGATLGFSGKGVKAPAGIVQGNRLQALLADWTAAVPINQPFDQLPIPYRAIATDLQTGQMVVLDHGSLPLAIRASMAMPGLFAPAEINDRALVDGGLVRNLPVDSARQMGADVVIAVDIGSPLRPLDALASPADVAQQMVGILIRQNVAAQRKQLTPRDVLLTPELGTLTFTDFQKANQAIAAGEAAATAALPRLKRYALTPEQYAAYRASHTQPLPPAVRITDIEIRTNGGVPQRVVRDALHVKPGDTYDPKTVSRDLLSLTTDGNFESVTQQVVSHGDENRLVIDAREKYWGPNFLLFGLGMSSSSTDQGGFRLHVGYRRPWLTETGLEFRTDATVGSDLDAVHVELRQPLSVKYGDYIAPYAEYQRRYANLYDDSGDVKVTQYMVQTARAGIDFGVPIGRLGDFRIGLAYTHSHGSPTFNLPDFFSDTPGGLLFSSYSADALSARARLVIDQLDDPRFPRKGYFAEFRVDRSLMSRNGASAASLDDRITDAPYTELYGKLMVAQQFGRHSVSAGVEGGKSIGGTNLINAFNFTLGGFQHLAAYAADQLNGDSLVYGQMTYMNQLATFSSSPVKALFIGASAEVGNVWSGGTGIGGGALKQSYTFFTSLTTTFGPLYMGVALAPGGRRNFYLQLGRTY
>NZ_CP013371.1|WP_059656487.1|2293909_2295040_-|sensor-histidine-kinase
MIKRPAAHPDAPHLSPLRYVRWRWMHFRRAWTDTRADRIPSWSRLYVRTYLHLLGLVLLTALVPALALCVVLSPRLVWHAFDALPGDVWLVLAFVFAAPALAAYRWMRPVWSDLVMVRERAIDFTGGRFNTRARESHSVIIGPLARTLNALAMRMERLIAAQRDLTNGISHELRTPLARVRFALEILREPGSAAEYESALDSIAQDVTELDELIDMSLTYARLEYSSLQSNLEPTAPAAWLEHQVKDAALLYPEKTIETRIAIAADVRVEMDRRLMSYAMRNLLRNASKYARSRIVVGIAIDHGNIGVYVEDDGPGVPESERERIFEAFVRLDRRTGGYGLGLAITRQVLQAHNGRIAVVDPAELGGARFEISWPI
>NZ_CP013371.1|WP_080402217.1|2295585_2295969_+|cytochrome-c
MKARELFIASLGALVLTQPSLSFSQNINGKNLYIQRCAMCHGADIKGTGPLAKKSNPATPDLTTAAFKKRLYDYPGVIVSSVILRPNGDLIPRTLRENGVKLAPHYWTVQDFRDLNEYMSDVISQSR
>NZ_CP013371.1|WP_059656489.1|2296101_2296482_-|hypothetical-protein
MLIRRTVALSVAAALSCFIGCAVIVSTLLHVETLTQLDRLVSFGYLSFADSLEISDAGGPADFFFGGIGLVLLGSLLLTKVPSVERIARGVACALFLFLASCLVYACLHSRVGEVPDYLRSAPTAK
>NZ_CP013371.1|WP_059609597.1|2296487_2296844_-|hypothetical-protein
MKLKEVTITMVLVLVACYIGAGAPPLELLIKPSVVLDGLALKSGTWHYSNREDYAVPASEILASRFYTLIIAALCAACGIAVGRVKVTWKRLACFVAVAVALQFVFYYAQMRAFYLPW
>NZ_CP013371.1|WP_059609598.1|2296995_2297715_-|response-regulator
MSFRILLVEDDTRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSIRPDLVILDVNLPGKDGFEICREARKQYDGVIIMVTARDEPFDELLGLEFGADDYVHKPVEPRILLARIKAQLRRAPARVPDGSAPQPERYTFGKFSIDRTDRTVMLPDGSAPDLTSAEFDLLWALVCHAGEVVSRDDLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFSKHAWGEDE
>NZ_CP013371.1|WP_059609599.1|2297938_2298853_+|glutaminase
MNYQSILERIHTELAPWIGQGRVADYIPELAKVPADKFGMAVVTLDGNVYTVGDARERFSIQSISKLFACTLAFQLLGDALWDRVGREPSGNAFNSLVQLETERGKPRNPFINAGALVVTDVLCRRFVKAETALVEFVRRLIGAADIDYDSRVALSELQHAERNRAMAHFMASFGNMQMPPETVVDAYCRQCAIEMNCVELARAALFLANGGVAPVTGERIVDSSSAKRLSALMLTCGTYDAAGDFVYRVGLPAKSGVGGGIVAVLPGEMAVCVWAPGLDANGNSLAGTRALEWLTTYSGRSIF
>NZ_CP013371.1|WP_155122985.1|2298989_2299592_-|hypothetical-protein
MRKILNILSARHRSGHAASTLETNALDAAIWSVAMLVDDRVAFESQAADVAEKLGAGAIDMLLSRLHTPTQPTPKTFESDTRGLGAWLAAWQFAIFEVLYHFRGSVLDALRGIAWGEYDWTQGNALEILVRLAAKGIGRELTIADFHRNFEHVSEEAKRYAVGPLLHRAKFDPEVAATVSELNSVREWREVVHELESSKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

623331 : 678028

Ralstonia_phage(25.0%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059651407.1\|623331_623763_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059651405.1\|623775_624438_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_080402062.1\|624434_625781_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_059651403.1\|625838_627227_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_155122923.1\|630169_630880_+	hypothetical protein	NA	NA	NA	NA
WP_155122924.1\|631089_631764_+	hypothetical protein	NA	NA	NA	NA
WP_155122925.1\|632161_632851_+	hypothetical protein	NA	NA	NA	NA
WP_059656034.1\|633238_634864_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	4.3e-35	27.7
WP_155122926.1\|635000_636332_+	hypothetical protein	NA	NA	NA	NA
WP_069275271.1\|636332_639854_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_059709257.1\|639870_641685_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059709261.1\|641783_642764_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069275272.1\|642795_643440_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_155122927.1\|643354_644095_-	hypothetical protein	NA	NA	NA	NA
WP_010098089.1\|644101_644533_-	hypothetical protein	NA	NA	NA	NA
WP_059654516.1\|644621_646223_-	tyrosinase family protein	NA	NA	NA	NA
WP_155122928.1\|646562_647153_-	hypothetical protein	NA	NA	NA	NA
WP_059673748.1\|647316_648423_+	hypothetical protein	NA	NA	NA	NA
WP_080402137.1\|648642_650400_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_059618104.1\|650445_652413_-	glycosyltransferase	M1HVH2	Acanthocystis_turfacea_Chlorella_virus	2.9e-25	26.4
WP_059654513.1\|652415_653753_-	hypothetical protein	NA	NA	NA	NA
WP_059654511.1\|653773_655231_-	multidrug transporter	NA	NA	NA	NA
WP_059654538.1\|655983_656388_+	TIGR02594 family protein	A0A249Y3Q7	Serratia_phage	2.8e-28	43.0
WP_059654536.1\|656457_657894_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_059619449.1\|657904_659479_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_059654509.1\|659510_660602_-	HlyD family secretion protein	NA	NA	NA	NA
WP_059618115.1\|660666_661098_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_059618117.1\|661147_662086_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059654507.1\|662187_662616_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_059654505.1\|662878_664126_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_059654503.1\|664118_664604_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_059654500.1\|664701_665805_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_059654498.1\|665881_667915_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_042587262.1\|667942_668347_-	DUF2471 domain-containing protein	NA	NA	NA	NA
WP_059633502.1\|668503_669397_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059654495.1\|669484_670273_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_059618134.1\|670280_670706_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059654493.1\|670702_673432_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.5e-88	32.4
WP_006479553.1\|673570_674056_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_059654491.1\|674148_675927_-	OmpA family protein	NA	NA	NA	NA
WP_059654489.1\|675923_676679_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_059618142.1\|676675_678028_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP013370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

189527 : 219504

Burkholderia_phage(75.0%)

integrase,holin,plate,tail

attL 181573:181592|attR 194142:194161

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
181573:181592	attL	NA	NA	NA	NA
WP_059609420.1\|189527_190604_-\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	1.6e-171	84.9
WP_080402169.1\|190471_190879_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080402168.1\|190921_191281_-	hypothetical protein	NA	NA	NA	NA
WP_059655352.1\|191277_194070_-	hypothetical protein	E5E3N5	Burkholderia_phage	0.0e+00	92.0
WP_059609418.1\|194073_194337_-	hypothetical protein	E5E3N6	Burkholderia_phage	8.5e-18	65.1
194142:194161	attR	NA	NA	NA	NA
WP_010095912.1\|194541_194790_-	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	5.9e-37	91.5
WP_059609417.1\|194914_195130_-	hypothetical protein	E5E3U1	Burkholderia_phage	1.1e-20	81.4
WP_155122821.1\|195256_195712_+	helix-turn-helix transcriptional regulator	E5E3U2	Burkholderia_phage	2.9e-45	64.2
WP_059609416.1\|196082_196379_+	hypothetical protein	E5E3U3	Burkholderia_phage	1.2e-12	50.5
WP_059655350.1\|196506_197586_-	phage late control D family protein	K4PAY4	Burkholderia_phage	1.0e-133	72.4
WP_059609414.1\|197582_198038_-\|tail	phage tail protein	K4NXK5	Burkholderia_phage	2.1e-40	64.3
WP_059655348.1\|198067_200620_-	hypothetical protein	A4JWS3	Burkholderia_virus	4.0e-152	47.0
WP_010095898.1\|200635_200749_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	1.8e-09	81.1
WP_059655346.1\|200757_201141_-\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	7.8e-28	68.0
WP_080402167.1\|201210_201714_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	1.1e-69	74.3
WP_059609411.1\|201748_202921_-\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	2.3e-187	82.5
WP_059655344.1\|203004_203841_-\|tail	phage tail protein	E5E3Q6	Burkholderia_phage	4.0e-93	61.3
WP_059655342.1\|203855_206147_-	hypothetical protein	E5E3V2	Burkholderia_phage	5.3e-265	61.6
WP_059655340.1\|206153_206696_-\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	1.1e-70	70.4
WP_059655338.1\|206688_207603_-\|plate	baseplate assembly protein	E5FFH3	Burkholderia_phage	2.4e-123	74.9
WP_059609406.1\|207599_207962_-\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	5.4e-39	66.7
WP_059655336.1\|207958_208642_-\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	7.5e-82	70.0
WP_059655334.1\|209206_209650_-\|tail	phage tail protein	A4JWL9	Burkholderia_virus	1.4e-07	30.9
WP_059655332.1\|209659_210721_-	hypothetical protein	A4JWL8	Burkholderia_virus	3.0e-53	50.0
WP_059655330.1\|210717_211284_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	2.2e-39	57.7
WP_059655328.1\|211276_212188_-\|plate	baseplate assembly protein	E5FFH3	Burkholderia_phage	6.3e-76	50.8
WP_059609400.1\|212184_212640_-\|tail	phage tail protein	E5E3V9	Burkholderia_phage	8.1e-32	56.5
WP_059614777.1\|212632_212803_-	hypothetical protein	K4PAX1	Burkholderia_phage	8.5e-11	61.5
WP_059609399.1\|212756_213197_-	protein lysB	K4NXJ2	Burkholderia_phage	1.2e-16	44.4
WP_059655326.1\|213193_214039_-	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	7.8e-97	68.8
WP_059614783.1\|214042_214309_-\|holin	phage holin family protein	E5E3W3	Burkholderia_phage	5.6e-25	66.3
WP_059609396.1\|214310_214655_-	hypothetical protein	A4JWU2	Burkholderia_virus	6.7e-39	79.6
WP_010095858.1\|214670_214877_-\|tail	tail protein	E5E3W5	Burkholderia_phage	4.2e-20	70.6
WP_059655554.1\|215298_215769_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_059655552.1\|215960_217535_+	TIGR04222 domain-containing membrane protein	NA	NA	NA	NA
WP_059655324.1\|217833_219504_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.5e-19	31.7

DBSCAN-SWA_2

458009 : 490257

uncultured_Caudovirales_phage(40.0%)

transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059614042.1\|458009_458519_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-20	46.3
WP_080402099.1\|458682_458811_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155122827.1\|459102_459681_-	hypothetical protein	NA	NA	NA	NA
WP_059652539.1\|460112_463010_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.2e-49	27.0
WP_059652555.1\|463082_463562_+	hypothetical protein	NA	NA	NA	NA
WP_059652542.1\|463586_465527_+	TIGR02594 family protein	A0A1U9ZAE8	Proteus_phage	8.3e-09	36.2
WP_033355802.1\|465513_466065_+	hypothetical protein	NA	NA	NA	NA
WP_059613606.1\|466568_466829_+	hypothetical protein	NA	NA	NA	NA
WP_059613608.1\|467202_467406_+	hypothetical protein	NA	NA	NA	NA
WP_059617961.1\|467502_468303_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_059652545.1\|468625_471796_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.6e-54	27.7
WP_059612071.1\|476431_477043_+	hypothetical protein	NA	NA	NA	NA
WP_088503032.1\|478451_479650_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.0e-50	39.2
WP_059612080.1\|479794_480118_+	hypothetical protein	NA	NA	NA	NA
WP_059612082.1\|480239_481019_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_059612084.1\|481015_482362_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_059612086.1\|482464_483076_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_155122828.1\|483062_483287_+	hypothetical protein	NA	NA	NA	NA
WP_059636829.1\|483451_484093_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_042582986.1\|484136_484664_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_059536578.1\|484679_486170_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_010096526.1\|486238_486742_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_042582988.1\|486806_487292_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059654348.1\|487357_489193_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059613975.1\|489156_490257_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_3

896336 : 903040

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059654768.1\|896336_897398_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-86	47.0
WP_059654770.1\|897409_898303_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.3e-97	58.1
WP_059654772.1\|898287_898839_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.5e-44	50.9
WP_059654774.1\|898835_899744_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.4e-19	31.3
WP_059654775.1\|900020_901436_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.7e-56	31.0
WP_059654777.1\|901437_902280_+	ABC transporter permease	NA	NA	NA	NA
WP_059654780.1\|902284_903040_+	ABC transporter ATP-binding protein	A7IVC2	Paramecium_bursaria_Chlorella_virus	1.8e-07	28.9

DBSCAN-SWA_4

1427556 : 1434686

Ralstonia_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059656002.1\|1427556_1428552_-	endonuclease	A6XMH8	Bacillus_virus	4.8e-53	39.7
WP_059655999.1\|1428815_1429784_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.7e-58	42.4
WP_059656024.1\|1429876_1430104_-	hypothetical protein	NA	NA	NA	NA
WP_088503015.1\|1430838_1431129_+\|transposase	transposase	NA	NA	NA	NA
WP_059656022.1\|1431376_1432111_-	hypothetical protein	A4PE26	Ralstonia_virus	8.2e-34	40.1
WP_060284440.1\|1432116_1432485_-	hypothetical protein	NA	NA	NA	NA
WP_059709227.1\|1432579_1433059_-	hypothetical protein	NA	NA	NA	NA
WP_059655996.1\|1433051_1433555_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	2.2e-22	46.2
WP_059655994.1\|1433558_1433969_-	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	2.2e-12	40.7
WP_059655992.1\|1434059_1434686_-	hypothetical protein	Q8W6R9	Burkholderia_virus	1.4e-45	47.8

DBSCAN-SWA_5

3592397 : 3628619

Erwinia_phage(20.0%)

plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042586564.1\|3592397_3592934_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_059655274.1\|3592944_3594288_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.9e-42	28.9
WP_059655282.1\|3595793_3596234_+	hypothetical protein	NA	NA	NA	NA
WP_059611872.1\|3596459_3597002_-	response regulator transcription factor	NA	NA	NA	NA
WP_059611873.1\|3597036_3598407_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_059611875.1\|3598495_3598720_-	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_010090348.1\|3599038_3599938_+	acetylglutamate kinase	NA	NA	NA	NA
WP_059611877.1\|3599934_3600726_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_059611878.1\|3600692_3601370_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_059634540.1\|3601410_3604083_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	8.6e-73	30.8
WP_080402165.1\|3604488_3605514_+	TagK domain-containing protein	NA	NA	NA	NA
WP_059616432.1\|3605494_3606355_+	ImpE protein superfamily protein	NA	NA	NA	NA
WP_059611886.1\|3606338_3606860_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059616435.1\|3606861_3608742_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059611889.1\|3608745_3609807_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_059611891.1\|3609803_3610862_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_059611893.1\|3610912_3611944_+	fimbrial protein	NA	NA	NA	NA
WP_059655279.1\|3611974_3613327_+	hypothetical protein	A0A292GJ55	Xanthomonas_phage	6.4e-109	46.1
WP_059655281.1\|3613379_3616832_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.6e-15	42.6
WP_080400576.1\|3616843_3617110_-	hypothetical protein	NA	NA	NA	NA
WP_080484890.1\|3617182_3620605_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.7e-36	26.2
WP_059655544.1\|3620704_3621268_-	hypothetical protein	NA	NA	NA	NA
WP_059655542.1\|3621248_3622049_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_059636979.1\|3622045_3625954_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_059611905.1\|3625968_3627273_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_059611907.1\|3627269_3628619_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013369

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013368

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP013370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection