CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013377	Burkholderia pseudomultivorans strain SUB-INT23-BP2 chromosome 2, complete sequence	2 crisprs	csa3,PD-DExK,DinG,cas3,RT	0	1
NZ_CP013378	Burkholderia pseudomultivorans strain SUB-INT23-BP2 chromosome 1, complete sequence	1 crisprs	RT,WYL,cas3,DEDDh,csa3,DinG	1	6
NZ_CP013379	Burkholderia pseudomultivorans strain SUB-INT23-BP2 plasmid pINT23, complete sequence	0 crisprs	NA	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013377_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013377_1

468370-468468

Orphan

Consensus_repeat	Method
CACGGTGCTGTTGGTCGAGCTGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013377_1

>merge|NZ_CP013377|1|468370-468468|CRISPRCasFinder
CACGGTGCTGTTGGTCGAGCTGAGACCCGTGGACAACGAGCTGATACCGGTCGAGGTCGACGTGGACAGCGAAGCCACGGTGCTATTGGTCGAGCTGAG

>NZ_CP013377|1|1|468370-468468|CRISPRCasFinder
CACGGTGCTGTTGGTCGAGCTGAG	ACCCGTGGACAACGAGCTGATACCGGTCGAGGTCGACGTGGACAGCGAAGC
CACGGTGCTATTGGTCGAGCTGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013377.1\|WP_069243680.1\|478137_481563_-\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|227665
NZ_CP013377.1\|WP_080293095.1\|482224_483322_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP013377.1\|WP_009695612.1\|454301_455444_+\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013377.1\|WP_040132030.1\|452089_454090_+\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NZ_CP013377.1\|WP_009687262.1\|475843_476497_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP013377.1\|WP_069243679.1\|476776_478141_-\|DUF3999-domain-containing-protein	unknown	unknown	gnl\|CDD\|372507
NZ_CP013377.1\|WP_009687263.1\|475398_475617_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_059606044.1\|485451_486402_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
NZ_CP013377.1\|WP_009692993.1\|483314_484211_+\|choline-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226644
NZ_CP013377.1\|WP_009689359.1\|460670_461141_-\|DUF4019-domain-containing-protein	unknown	unknown	gnl\|CDD\|372517
NZ_CP013377.1\|WP_009689358.1\|459514_460651_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013377.1\|WP_040131030.1\|462338_463484_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013377.1\|WP_069243674.1\|456209_457022_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225110
NZ_CP013377.1\|WP_069243676.1\|461169_462324_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013377.1\|WP_059605155.1\|463812_464481_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP013377.1\|WP_009692992.1\|484328_485327_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP013377.1\|WP_009695610.1\|457057_457483_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_059515113.1\|486532_486958_-\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP013377.1\|WP_069243675.1\|457524_459492_-\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NZ_CP013377.1\|WP_009687264.1\|474398_475304_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013377.1\|WP_069243680.1\|478137_481563_-\|DUF2339-domain-containing-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	4.18375e-97
NZ_CP013377.1\|WP_080293095.1\|482224_483322_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	8.85763e-175
NZ_CP013377.1\|WP_009695612.1\|454301_455444_+\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP013377.1\|WP_040132030.1\|452089_454090_+\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP013377.1\|WP_009687262.1\|475843_476497_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.05262e-22
NZ_CP013377.1\|WP_009692993.1\|483314_484211_+\|choline-ABC-transporter-permease-subunit	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	7.37262e-136
NZ_CP013377.1\|WP_059606044.1\|485451_486402_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP013377.1\|WP_009689359.1\|460670_461141_-\|DUF4019-domain-containing-protein	gnl\|CDD\|372517	pfam13211, DUF4019, Protein of unknown function (DUF4019). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 130 and 183 amino acids in length. There is a single completely conserved residue E that may be functionally important.	6.27174e-26
NZ_CP013377.1\|WP_009689358.1\|459514_460651_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	3.02028e-178
NZ_CP013377.1\|WP_040131030.1\|462338_463484_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP013377.1\|WP_069243674.1\|456209_457022_+\|EAL-domain-containing-protein	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	1.50635e-42
NZ_CP013377.1\|WP_069243676.1\|461169_462324_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP013377.1\|WP_059605155.1\|463812_464481_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	8.91875e-37
NZ_CP013377.1\|WP_009692992.1\|484328_485327_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.6168e-135
NZ_CP013377.1\|WP_059515113.1\|486532_486958_-\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	8.07596e-43
NZ_CP013377.1\|WP_069243675.1\|457524_459492_-\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	3.83611e-22
NZ_CP013377.1\|WP_069243679.1\|476776_478141_-\|DUF3999-domain-containing-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	7.4931e-120

>NZ_CP013377.1|WP_059605155.1|463812_464481_-|OmpA-family-protein
MNKLALALALAATALAACSTASGPTYSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARKICGDQPVRTVDAARALRDGSDPASLVFQCGAAPAEPAPAATPAPAPAAVEHVNLAGDALFATGLSTLTPAARTSLDKLLSEREDRTYTQVTITGYTDSVGSDASNLALSKRRAETVAAYLTRHGLKTQALTVTGRGSADPVASNATAEGRASNRRVEISLQR
>NZ_CP013377.1|WP_040131030.1|462338_463484_-|DUF2827-domain-containing-protein
MTDINETASGGTRRQRPAVGISLFARDGQAIWENGIHQNIAFLAMMLKRSERVGPVYFLNGGDAQALPAGLDLDGLDVPLVKPADVTHELDVVIEMGAQLPVDWLKHMKALGKKRVAFFCGHTYAGLCETPIFDKPSGHIINGAPFDEVWLLPQYDKTAAPMLRTLLRAPVHLMPHIWSPYFLERRLATLAAEGATFGYQPGRRPWRLATLEPNISVVKTCHYPMLACDEFYRARPDAVQHLFVVNAMHMKTHSTFVHFANSLDLVRHHKATFEPRLDLPGFMARHADAVVSHHWENGQNYLYYDVLYGGYPLFHNSTLLGDAGYYYPDFDSQAGGRALLDAWLHHDERADDYRTKTDRLLKSVSIDNPANLDAFVSRLVA
>NZ_CP013377.1|WP_069243676.1|461169_462324_-|DUF2827-domain-containing-protein
MSDSNARHAPGDGKRLVVGVSLFVRGAGQSLWENGIFQNCLLLILLLRQSPLVAEAVMVNGGEQVADPQMMLGEWNVPLLSMDEAMQRCDVLIEMSAQFGADYLRAFRERGGKVVTMRVGNDYVIDIERAMFNKPSGFLFSGAPYDAVWTIPEFERSCLHYYQTGLRAPVTIVPHIWHPLLFDKARASLGGGLSYGYQPGKPRWRVTMFEPNICMVKTSIIPMLVTEEAYRARPDFVEIVRVCNTTHLKNHTTFVHFAKSLDIVDHGITTFESRYAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGDYPLIHNSPFLGKAGYYYPDFDCQAGGRALLQAFAEHDANLDAYREQSKHVLDSVSIYNPDNVAAYTDAIAALHRDA
>NZ_CP013377.1|WP_009689359.1|460670_461141_-|DUF4019-domain-containing-protein
MTARSSVTRAKWLIACAAASIAFGAHAQSGGESADELLQDADTVFKRLDNGQFDDLWIDSASFVKTRIAQPQFVTDMRRARQTVGLVRHRGWAQITRIRYAGVPSTPDGLYANIDYATTLTTGTTMYEKLSFRLEDDGHWRLTGYVPRQAQNYTPQ
>NZ_CP013377.1|WP_009689358.1|459514_460651_-|DUF2827-domain-containing-protein
MKINVAITMNVQRDATQSIWYNGANQHCVYLYMLLKQSPLIGEVWLAHDDGIAEYPQALMMDAFRDALRPLSAVVHQTDLLIEMNAFIDQTHADAVRRHGGKCVSYRFGNDYVIAVETINFEKNNWRPNPNRVQFDAIWTNPQHMHTCAAYFQAVYRAPVIELPHIWSPYFIERSLDADPELKARFGYRNHGPAKRIAFFEPNLNVVKSAIVPMLAANACYVEHPELVEHVYMTNTFDKKENVAFKHLALGLEMVRDGKATADVRAPFVAWAAHHTDIVVSHHWENGLNYLLYDALYGNYPLVHNSPFLRDVGYYYPDFEIFDAARAIATAAQTHDARLDDYAAAARRCLHRVDALAEPNVRAHTEQVQRLFAGRVLG
>NZ_CP013377.1|WP_069243675.1|457524_459492_-|FkbM-family-methyltransferase
MNQAIRNFVVIDSVYGPFVINRHCAHQAEALIKTGRPHIQQELDTIMQVIDQLPDDAIAVDGGANAGLVCVPIAHRLRERGGRVYAFEPQRTLFHALGGTVALNQLDNLHLRNMGLASHNGTMTVPEIDYGQAADFGAVSLVDGHGADGSPTPVVALDSLGLPRLDFLKLDIEGMEIDALRGARRLIETHLPWCWIEYWKVGEAAIIATFAGLDYTFYRIDALNLLCVPNPRWDRQRLFITGEPLAAAPPVDEPGPAAGARADDAPETYWNRALEHEARCEWGHAIDCWQRARERGLDDDAIALQLASCYGFAGAPDAGLAALERFGDPAALPDAQRGRVELARSGLLLRAGRRDEAARATLASENVLTAAQFGLPTDRLYQGQPLQGRRLLVISYGGVGDQLQYARYLHALDALGCASVTVVVPDTLTGLLRHTFPHVAFVGSHGPWADTSQIAYDYWCSFLVLAAQFGYAPAPAGVPAAYLSCPPDRADAWRERVARDGSAPGTRRIGLNWRGRDESDARFHRAASLRDLAPLTRMHGHAAYCINRDLSAHTEQSDLPVTFPHHAIGDFSDLAALMLAMDAVVTTCTAHVHLAGALGVPAILLLSPKADARWETGSRTALYPGIRIVRATRRGQWDDAVDRAMALLLGGFGPD
>NZ_CP013377.1|WP_009695610.1|457057_457483_+|hypothetical-protein
MAGTTTGSGTGAQAKQARGLVALDELADMLRQLGAESAESGDAPIDVAPFVDGLKVVSDHIHRMKPLDAEGRELAARHYYAGVFAGACGDDSAIACGVAGRLAQQTGGVSPASVRRFAMLARVGRRHGRAFALYSGRRVHA
>NZ_CP013377.1|WP_069243674.1|456209_457022_+|EAL-domain-containing-protein
MNAVKARLEANREVNRDDEIGLVFGGPDRHANLASVRSFVESRLAFVYEPVCRADLSGGVLYHECLARLQRESDDALPPLAFLPRLESFGLMHWFDRLVVGRTIDGLRADPTAVYGCNVSAASAVMDDAWLAIFRRLEREPSVAARLVIEITETGPLNPVAGRSFVSRFRQAGCRVAIDDFGVGFSALNNLVVGNPDIVKLDKSILSMIKRNAIGRYQFRRLIAFAHEGARHVVVEGVENEMDRQMIVEAGVAWAQGIRFSCRAPAPAFA
>NZ_CP013377.1|WP_009695612.1|454301_455444_+|DUF2827-domain-containing-protein
MTSPVLNGLRIGITIGLRTPDESLWINGIKQNALFLAKLLMASPHGYRVTLVNTTGVPLTDALPWDRHVYDTRTFADTKDSLDVLIELGGQIDAEQTAYLKARGAKIVSYCCGVEYINAMESMLFGRRLWDSLFINRGYDEVWAIPQIAPSSLPFLQSLRRCPGRVVPFVWDPMFLTQRAQSLPELGEYRPRGERGKRLTVMEPNHNVVKFCVYPMLIIDEAYRRDPDSIVFTHVTNADRLARESAEFVMLMNYLDIVRAGKASFVGRFDTPVFLADLTDVVVSHQWSNPLNYFYFDVCWQGYPLVHNASLAPDLGYYYPDNDVQQGADALLRALHTHDDAWEAYARRQREILRRYTSANPALVAEYDALLANLVGATGA
>NZ_CP013377.1|WP_040132030.1|452089_454090_+|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MFDKILIANRGEIACRVAATCKRLGIASVAVYSDADANAKHVAACDEAVHIGGSAAADSYLRIERIIDAARATGAQAIHPGYGFLSENEDFAQACDAAGIVFIGPPVDAIAAMGSKAAAKALMHAAAVPLVPGYHGDDQDARNLHREADEIGYPVLLKASAGGGGKGMRVVERSEDFPAALASCQREAASSFGNDRVLIEKYLTRPRHVEVQVFGDTHGNAVYLFDRDCSVQRRHQKVLEEAPAPGLPDDLRRAMGEAAVAAARAVGYVGAGTVEFIMTGDAFYFMEMNTRLQVEHPVTEMVTGLDLVEWQLRVAAGEPLPLKQDELRVQGHAIEARLYAENPARGFLPSTGTLKHLRLPEGVEFDIGAPVRVDSGVREGDAITPFYDPMIAKLIVHGADRAEALGLMLRALRACEVVGLHTNAAFLQRIVACAPFASADLDTGLIERNHGALFAPQQPPRAALALACAALLARERGAAANGASPWAALPDWRLNGGYRRTLEWRAVERDTDHTVVYEDDGAGARLAAGDAAAQPFAWTRGASPLDFDVTLDGVRSSGRVYADGDVFHVFTQGAAETFEWRNLLAHAGDAEHGGGRLTAPMPGKVIAVLVEPGQKVEAGTPLIVMEAMKMEHTIGAPGAGVVAEVLYGVGDQVADGAQLLTMAEVA
>NZ_CP013377.1|WP_009687264.1|474398_475304_-|hypothetical-protein
MTDTLHEEHAAADHAMRNWTFERTGPVRIGSDAHKQMFCRMLLDTHNPYKPAVIDWPPLKPNELERLTSLPIWDIAVQTEGRASIRVATFAATVDDPLLRQALDMDGSEEARHKVVLSKLVDAYGIKLAPEPAYPAPKDPEWSWMVTGFSECIDSFFAFGLFRSAQRSGYFPPELVDTFEPVIQEEGRHILFFVNWFAWYWRNMPWWRRPWFFARVAAVWAFLVWERIGIARGIDADGVAHDANFPATGTAAVGDALDPRELIELCLSENDRRMAGYDGRLLRPTFVPRMARLALRFMRKK
>NZ_CP013377.1|WP_009687263.1|475398_475617_-|hypothetical-protein
MNRTIRYKGYEVAPAAARLPNGLFAANLTIEKASGGPSSRAVSFDAIDFFFEEEHALAYASRWGRLWVDTHA
>NZ_CP013377.1|WP_009687262.1|475843_476497_-|NAD(P)H-dependent-oxidoreductase
MTAFDQHRRPFVVGIGGTTRAASSTERALSFALRGAQAAGARTRLFDGPFLHTLPHYAPEHKTLTDAQRELIDAVREADAIIIATPGYHGGVSGLVKNALDTLEELRADERPYLDGRAVGLIVTAYGWQAAGTVLTSLRSIVHALRGWPTPFGATVNTLETRFDSADSCSDPKVVAQLETVGAQAAEFALAFASHRAASHAASVDALAPVLKIANNK
>NZ_CP013377.1|WP_069243679.1|476776_478141_-|DUF3999-domain-containing-protein
MKSLTALLGLSLLASFAAAADGAPPADRVAQRFALDLDGNAAYYQLTVPQPVYAASRRADLGDVRVFNGAGEPVPYSLDAPAAATPAAPPARVPVHWFPLPAARADDGHAPLGVSVGPDGSLRAAVAAPSRAKHGADLVDLSHADGQPDALLVHVSDDSYQGCVAVEASDDLRSWRLLGDTQLLKVGRGDAMLVQERIALDGAAPRYLRLNWLDGAPAIASIEVETHPRDARATDAAAVPRQWRDAVHVRAGDAAGEYRFETDGAYPVDRLRIELPQPNTVARATLQSRPDAQTPWRDVADVALFRLQGKAGEQRNPPLAFAANTDRAWRLVVDMRNGGLGGGQPAISIGWHPAALTFVARGAPPFTLGVGNASLVSSAVGRDALLVGMAPEVRPARVGAALPVAAPPPAPVDVDTDAKRRYVLWGALVAAVGVLGTIAWRLTRGSGTTRSGGE
>NZ_CP013377.1|WP_069243680.1|478137_481563_-|DUF2339-domain-containing-protein
MNWAFAVIGFVVGGIAALIGDFSAANGSLLGAVAGFWVGHMLRRRKRGDNDGNNTSRDPFALPAQPQQPVVPLADRVARLEATVESLNREVASLRAQLAGAKAGTTAAGAVAAASTTASVTAAPPAPAPAASATPAAPPPRPPAQPAAARPAAQASPSAPAPTPAPLATSMPAATPRTNDVPAAAPTPATPPRPAAPVPREPGFAERAFRAARDWLLGGNTVVRVGIIVLFFGVASLLKYAADNNLLPIEFRLAGTALGAAALLALGWRMRARRAAYGLVLQGGGVGILYLTIFAATKLYALLPVGAAFPLMVAVCALSAFLAVKQNALPLAFMGSAGGFLAPVLLSTGHGSHVALFSYYALLNAGIFAIAWFKAWRPLNLLGFVFTFTIGSAWGVTAYRPALFASTEPFLLLFFLMYVGIALLYAVRRELALRHYVDGTLVFGTPIVATALQAALVKDMPFGLAWSAVALSAFYVAVAAWLARRRARLALLFEAMLALAVIFATLAVPLAFSGPTTSAAWAIEGAALVWIAVREKRLAPFCFGLLMQVAAAGAFFTSLLGPGDANALPVLNSAYIAMLLIALAGLFTGWWLHGRDEARAWRAWTPEIGAAAAAWGLLWWISGGLHEILLYASRHVDLHADRFVVDTIALFAAGTAWLAHVARRRLAWPLAEWPALALTPVLALLAMRAYEALEAPLSGMGAFAWPIAVIACYALLWRQSRDGAIDNAAKEAAAPGHVAGLLANLIAPLHTLMFWTLCGLLSLEGFWRLRTFVPEGAWSWSAWAYGFGVLLLLVSVPGSRLRWPVAAFPRAYQVWGAAPLAVLLWAWSIASVTSDGDAAPLFWLPLLNPLDVAQGLVFVAIAAWLRRLKSLGIEWHARVVDFAAIATAFLWFNALLLRTLHHRFHLPYDVDTVLASFGLQQVFMVGWSLFAFAGMWLTRRDGIARACALASLPLVVVMWVWTFYANFTQDGGSWARVPLFNPLDLVLVVVYALAVSWFVRVRRFGWSFENYRVELLSAAGATAFLWLNAILLRTLHHWTGVPYEFGAMAASTLVQASVSVYWTLCALATMIWATRRGLRPLWFVGAALLALTVVKLFLFDLSHVTGIERIVSFIGIGVLLLLIGYFSPLPPKAAAHREDTP
>NZ_CP013377.1|WP_080293095.1|482224_483322_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MLAAGATKDDVLKRTGQVVGVHNVSFDVQEGEIFVLMGLSGSGKSTLIRLVNRLVDPSAGKVLIDGLDVASARRSALTALRRKDMSMVFQSFALMPHRSVVSNAAFGLEVAGVGKKERERRAMEVLEQVGLAPFSHKLPSELSGGMQQRVGLARALAVNPSLMIMDEAFSALDPLKRREMQDVLLQLQKEQRRTIMFVSHDLEEALRIGNRIAIMEGGKLVQVGTPQDIIANPADDYVRAFFDGIDTSRYLTAGDLMQTGAVPIVSKCDAAHVAATLNGSAEYAFVLDAERKLRGFVTRDAIGQDTPAVRPIESIRRDATLDHVVARVVANPNALPVVDDDGCYCGSVDRALILKAITRSRGSHV
>NZ_CP013377.1|WP_009692993.1|483314_484211_+|choline-ABC-transporter-permease-subunit
MSEMIPLGSWVDQSVHYLLDHDAKTFDAIGQAIEGLAAFVEHGLQAIPMWLMMAIFIGIGLWRVGWRFALFTTASLLLIFATGFWDQTVITLGLTLSSTIISLVLGIPLGIWAAKSKWVAAVVRPILDLMQTMPAFVYLIPAAMLFGLGRVPGILSTVIFAMPPAVRLTSLGIRHVNREIVEAGQAFGCTPWQLLYKVQFPNALPSIMQGVNQTIMMALSMVIIASMVGAGGLGNDVLASIQRLDIGLGFESGLSVVLLAIILDRITESFGRAPGTVRAPLFSGLKQLFRVKAETAQA
>NZ_CP013377.1|WP_009692992.1|484328_485327_+|GlxA-family-transcriptional-regulator
MTSAAAVAPAACVSPVSSLAHFGFLTLPNFSMIAFSSAVEVLRMANYVAREDHYRWSIYSLDGAPVHASNGIAVRPTQALDYTRLPDVMIVCGGIRIRDVVDDGARDTLAALAERGLPLGGICTGAYALMSSGLLDGYRCTVHWENLSALHTEFPQVGFADELFVVDRDRLTCTGGTAPLDLMLNLVGMRFGQQLAAQVSEQFILERIRSSTDTQPIPVDARVGFSRAELIEVVRLMEANIEEPLSLEELARLVRLSQRHLQRMFKVYLNVSPTHYYLTLRLKRARDLLRTTDASIARVTTVCGFHSPCHFSKAYRAQFGHAPSYERRLPGR
>NZ_CP013377.1|WP_059606044.1|485451_486402_+|choline-ABC-transporter-substrate-binding-protein
MKRLLIAAACGVGIAAAPVSAVHAADPPVCRNVRFADVGWSDIAATTGLASTMLQGLGYNPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAQRCPNVAKFVSNLQFTTAIENHVMVPIMNKEDPNKAAAAWLKANPQMLDKWLAGVTTIDGKPGLPAVKAYLGVH
>NZ_CP013377.1|WP_059515113.1|486532_486958_-|PACE-efflux-transporter
MQGLPRRITQAVLYEAIAIACISPAISAVFKQDLVYSGALSATMSAIAMLWNLVFNALFERWEASRRRRTRTLGRRILHAAGFEGGLIFILVPVVSWWLEISWFDAFVVDIALFAFFFCYAFVFQWAFDRVFDVPAATRPR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013377_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013377_2

718017-718089

Orphan

Consensus_repeat	Method
CCGCAGTTGGCGCTTCAGCGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013377_2

>merge|NZ_CP013377|2|718017-718089|CRISPRCasFinder
CCGCAGTTGGCGCTTCAGCGCTTACTGCGGTCCCATGCACTCGCGGTCGGCCGCAGTTGGCGCGTCAGCGCTT

>NZ_CP013377|2|2|718017-718089|CRISPRCasFinder
CCGCAGTTGGCGCTTCAGCGCTT	ACTGCGGTCCCATGCACTCGCGGTCGG
CCGCAGTTGGCGCGTCAGCGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013377.1\|WP_009695843.1\|721653_722028_-\|DUF2917-domain-containing-protein	unknown	unknown	gnl\|CDD\|378568
NZ_CP013377.1\|WP_009695844.1\|722278_722566_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_167361723.1\|713940_714726_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_069243733.1\|715720_716023_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|181058
NZ_CP013377.1\|WP_069243734.1\|723571_725359_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235628
NZ_CP013377.1\|WP_040131171.1\|714927_715305_-\|DUF2946-domain-containing-protein	unknown	unknown	gnl\|CDD\|371400
NZ_CP013377.1\|WP_081056819.1\|726573_726771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_009695841.1\|719200_720502_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP013377.1\|WP_009695840.1\|718771_719059_+\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
NZ_CP013377.1\|WP_009692777.1\|712890_713064_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_059517048.1\|710238_711114_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|132386
NZ_CP013377.1\|WP_040131174.1\|722635_723541_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|378401
NZ_CP013377.1\|WP_040132061.1\|718336_718528_+\|DUF2964-family-protein	unknown	unknown	gnl\|CDD\|314178
NZ_CP013377.1\|WP_009692776.1\|713094_713541_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP013377.1\|WP_069243730.1\|711455_712781_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|275380
NZ_CP013377.1\|WP_009695842.1\|721211_721490_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013377.1\|WP_059517032.1\|725403_726300_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|376349
NZ_CP013377.1\|WP_069243731.1\|713581_713944_-\|copper-resistance-protein-CopC	unknown	unknown	gnl\|CDD\|225247
NZ_CP013377.1\|WP_009692781.1\|708918_710166_+\|3-(3-hydroxy-phenyl)propionate-transporter-MhpT	unknown	unknown	gnl\|CDD\|236927
NZ_CP013377.1\|WP_040131173.1\|716109_717999_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822

Protein	Function_ID	Function_description	E-value
NZ_CP013377.1\|WP_009695843.1\|721653_722028_-\|DUF2917-domain-containing-protein	gnl\|CDD\|378568	pfam11142, DUF2917, Protein of unknown function (DUF2917). This bacterial family of proteins appears to be restricted to Proteobacteria.	1.84583e-15
NZ_CP013377.1\|WP_069243733.1\|715720_716023_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	1.13096e-19
NZ_CP013377.1\|WP_069243734.1\|723571_725359_-\|SDR-family-oxidoreductase	gnl\|CDD\|235628	PRK05855, PRK05855, SDR family oxidoreductase.	0
NZ_CP013377.1\|WP_040131171.1\|714927_715305_-\|DUF2946-domain-containing-protein	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	3.20259e-08
NZ_CP013377.1\|WP_009695841.1\|719200_720502_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.02652e-164
NZ_CP013377.1\|WP_009695840.1\|718771_719059_+\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	4.93559e-26
NZ_CP013377.1\|WP_009692781.1\|708918_710166_+\|3-(3-hydroxy-phenyl)propionate-transporter-MhpT	gnl\|CDD\|236927	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional.	0
NZ_CP013377.1\|WP_040132061.1\|718336_718528_+\|DUF2964-family-protein	gnl\|CDD\|314178	pfam11177, DUF2964, Protein of unknown function (DUF2964). This family of proteins with unknown function appears to be restricted to Proteobacteria.	6.9242e-17
NZ_CP013377.1\|WP_009692776.1\|713094_713541_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	6.43741e-42
NZ_CP013377.1\|WP_069243730.1\|711455_712781_+\|serine/threonine-protein-kinase	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.96293e-22
NZ_CP013377.1\|WP_040131174.1\|722635_723541_-\|metal-dependent-hydrolase	gnl\|CDD\|378401	pfam10118, Metal_hydrol, Predicted metal-dependent hydrolase. Members of this family of proteins comprise various bacterial transition metal-dependent hydrolases.	2.83309e-90
NZ_CP013377.1\|WP_059517032.1\|725403_726300_-\|aminopeptidase-P-family-protein	gnl\|CDD\|376349	pfam00557, Peptidase_M24, Metallopeptidase family M24. This family contains metallopeptidases. It also contains non-peptidase homologs such as the N terminal domain of Spt16 which is a histone H3-H4 binding module.	7.35434e-15
NZ_CP013377.1\|WP_069243731.1\|713581_713944_-\|copper-resistance-protein-CopC	gnl\|CDD\|225247	COG2372, CopC, Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only].	5.21523e-26
NZ_CP013377.1\|WP_059517048.1\|710238_711114_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|132386	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.	5.51733e-131
NZ_CP013377.1\|WP_040131173.1\|716109_717999_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	4.07687e-152

>NZ_CP013377.1|WP_040131173.1|716109_717999_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MPQSSVLPTTSGRIDLLAQAHGRSTAVGLRADERPDFSPLSHIALRELLDTNHALFAHARPVMENLHAQIADTQSLVLLTDSAGVILHSIGDADFIEKANRVALCTGVSWAERARGTNAIGTALASGQAIAVHGPEHFLRANHILTCSCAPIVDPFGRTLGALDVSGDPRGFSPHTLALVRMSAQLIENHLFANQCAEALRLRFHAHEECVDSLFAGLVAFGPDGGLIAANRSAQFQLGAPFDALQHQGCDALFGMRFGELAQQAARAPGATFRLTLSTGVRVLARCEFAEAHKTAVTVAPPAPAARMRAPDPDAITFATLDSGDARMAAVLERVAKIRGRDLPLLILGQTGTGKEWLARALHHASPRADGPFVAVNCAALPDSLIEAELFGYEDGAFTGARKRGSPGKIVQADGGTLFLDEIGDMPLAQQVRLMRVLQERAVMPLGGARAVPVDVRVVCATHRDLRAMIAAGTFREDLFYRINGLAVTLPPLAARTDLPALVERILARLARSEPMPRRIAPAVLDAFARHRWPGNLRQMTNVLRTAGMLADDEPEITLAHLPDDFWLDCNDAPAAAAPSPAAREAATLQDHQAAVIDAVLARHGGNVSAAARELGLARNTVYRYLRRH
>NZ_CP013377.1|WP_069243733.1|715720_716023_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTDSERPPVVRIEPLGVSFDAPDSLTLLEAAAFARVSLPRTCRNGTCRTCLCRIVSGSVRYTIEWPGLSRDEKADGYTLPCVAVATSDLVLDVPDAVVLD
>NZ_CP013377.1|WP_040131171.1|714927_715305_-|DUF2946-domain-containing-protein
MLSRRLRKIGSLIGMLAILMASLAPTISQALTTQSRVDALLASYCTVQPSSASDAANASSKSLCAHLQACGYCSLLTHAPALPTPELTFAATVRVLQHREATRFESLRRTLPLTAAQPRAPPFPS
>NZ_CP013377.1|WP_167361723.1|713940_714726_-|hypothetical-protein
MAIDDPGVGDEIDFQFGHIKTPGDSGDVNVNTASFEWDKLITSNLAFSVGSAYVTQNAPDGGSAKGADNLTIGLKYLAYVNPAHEFMLSAGVHATLGGTGSKAIGDAFSTISPGVFFGKGFGDLPDALAYLRPLAITGAVSPNFTTNASAPDSLDWGMTVQYSIPYLQSSVKNLGLGAPFANLVPIVEFPMNTCTGGACSGQTTGTINPGVLWLTRWGQFGIEAQIPVNRASGRHTGVLLQAHLYLDDIFPHSIGKPLIQP
>NZ_CP013377.1|WP_069243731.1|713581_713944_-|copper-resistance-protein-CopC
MKTSALLRGAAALTVIVAQAAHAHAFPKTQQPAAGATLTSAPHAVTIDFDEALEPAFSSIAVTDSHGQSVADGKSSVDDGNRKRMHVALSNLTAGTYTVAWVAVANDGHRTQGHYTFTLK
>NZ_CP013377.1|WP_009692776.1|713094_713541_-|copper-chaperone-PCu(A)C
MKKSLSAGLMLALLGLHASATFAAPAVQADACWIRAMPATVPSSGYFTVKNNGDKPVALTGVDTPAFGMAMLHETQTSGSTAKMVHVDSVEVPAHGTLTFKPKSYHVMLEEPRQPVAPGAKVPLALHFADGSTVSVSCDAKSPSYTGQ
>NZ_CP013377.1|WP_009692777.1|712890_713064_-|hypothetical-protein
MKDRLLLADLIVRYRTPLNVAVLIACGLWAGWIAWMTRPGAIDSPSAIAAYCMRDAR
>NZ_CP013377.1|WP_069243730.1|711455_712781_+|serine/threonine-protein-kinase
MKNTLEQLQSGRLTGARQLKLACGLTEFPREIFDLADTLEVLDLTGNTLASLPDDLPRLHRLRILFASGNRFTELPAVLGACSQLDMVGFKANRIRTVPRDALPRALRWLILTDNEIDELPAEIGDCSRLQKLMLAGNRLRVLPAEMAACRALELVRLSANRLETLPDWLLRLPRLAWLAYAGNPFGAALEAEASTDRSVAEIDWSELACEEKLGEGASGVIYRAQWHAAGQAPRAVAVKLFKGAVTSDGLPDCEMAACLHAGRHRNMIPVIGQLRGHPDGAHGLVMELVDPALDTLAGPPSFATCTRDVYAADVRFAPATAWRIAHGIASVARHLHARGIMHGDLYAHNILHDGAGGALLGDFGAASVYDVNDRVRAARLERLEVRAFGYLLDELLARCEPHAWEGSDVLDALAAACLNEEIDARPSFDEIAAVLAASKG
>NZ_CP013377.1|WP_059517048.1|710238_711114_+|alpha/beta-fold-hydrolase
MTATTAPITEASTSRFARVKDGDLELRIHYNDTGAGPTGETVVMLHGSGPGASGWANFNRNVEPLVAAGYRVILMDCPGWSKSDPVVCTSSRSELNGRVLKGLLDELDIGRVHILGNSMGGHSAVAFALGNPERVGKLVLMGGGTGGPSSFAPMPTEGIKLLQGLYREPTIENLKRMMNVFVYDASAITDELMKARLDNMLARRDHLENFVKSLAANPKQFTDYGPRLGEIAAPTLVIWGRDDRFVPMDIGLRLIAGMQNAQLHVFNRCGHWAQWEHADAFNRMVIDFLQH
>NZ_CP013377.1|WP_009692781.1|708918_710166_+|3-(3-hydroxy-phenyl)propionate-transporter-MhpT
MNTSRKEGGTARNGHATIALCLAIALLEGLDLQSAGVAGPRMAKEFSLAVAQMGWAFSAGAIGLLPGAAFGGRLADRFGRKRVLMWSVAMFGLFSLATTQVWSFESLLVARLMTGFGLGAAMPNLIALCSEAAGPQQRSTAVGAMYCGMPFGAAIAAVIGIASAGDASWRHVFYVGGFGPLVMVPLLGLFLHESQQFVATRSSAAGRAAGLPGVSDALWRYGRARTTVALWISYLGTLVVLYFLMNWLPSMVLSRGLTRVQSNVVLMMFNIGGGIGAVTIATLMDRFGRRGTVIGMYVGVGVALATLASAGGATSMAVGGLLCGLFLVGGQSVLYALAGHAYPTEVRGTGVGAAVAVGRLGSILGPLVAGQLFALGQSPSMLVSASIPLVVIAAVAALTVVGAFTQQRAGEPQRV
>NZ_CP013377.1|WP_040132061.1|718336_718528_+|DUF2964-family-protein
MVRTELRVVLAAIATFIMLGGIAVAIHGLLFDLTDAVRYGAAAIATGATTAAIALNVWPTDPH
>NZ_CP013377.1|WP_009695840.1|718771_719059_+|DUF1488-domain-containing-protein
MQIHFTNDAPEYSGRDLMLAFTALVNGERVQCQITAEALEDHFGAASPRFEDMVGAFDQHRDRIEAAARRLLSETRAQCVTLRSGYVRFYEANWR
>NZ_CP013377.1|WP_009695841.1|719200_720502_-|NCS2-family-permease
MESIKRYFGFAEAGTDFRTEILAGVTTFLTMAYIIFVNPAILGDAGMPKESVFVATCLVAALASIIMGLYANYPIACAPGMGLNAYFAYTVVKGMGFTWQAALGAVFISGCLFLIVTLFRVREAIVNGIPKSLRISITAGIGLFLGIISLKTSGVIVGNPATLVTLGDLHKHDTILAIVGFFTIVTLDHLRVRGAILIGIIGVTILSFFFGDNQFHGVFSAPPSIDATLFKLDIGAALSTGIINVILVFFLVELFDATGTLMGVANRAGLLVEGKMNRLNKALLADSTAIVAGSVLGTSSTTAYIESASGVQAGGRTGVTAITVAVLFLACLFIAPLAGVVPAYATAPALLYVSCLMLREMVEVPWDDATEAVPAALTALLMPFTYSIANGVAFGFIAYGGLKLLTGQGGKVKPIVWIIAAVFLFRFFYLGSE
>NZ_CP013377.1|WP_009695842.1|721211_721490_+|hypothetical-protein
MLNWISRWAMRHAPTPEKTAASMLVTARMELFAAEQRVIDAKLQADYWRTRVSFLEEVQKQGIDPWVTSQATQRPELDSTPRSTGPRLAAST
>NZ_CP013377.1|WP_009695843.1|721653_722028_-|DUF2917-domain-containing-protein
MDQASPLFVRPDPRRTGAIALPTVVIRFAVTPRTTLSWRAPRDAEIRAHGAPLWITRPPSVDDFWVQPGDVLRVARGERIWLGTDNGESAEASITTAYVQRGERFRRALAQVQRLLVGRWRRSG
>NZ_CP013377.1|WP_009695844.1|722278_722566_-|hypothetical-protein
MAMKKTDLEKNKALKLTHAMKQSSSARFGKGVEAAAALDRRAQRKLDQEQGLVPFACKLNAELVEQLKARAATHPNGMTGLLSELLVNALAQRDA
>NZ_CP013377.1|WP_040131174.1|722635_723541_-|metal-dependent-hydrolase
MTDTAEYHKIKARHVKFDFSDTPITWVPNDPGSTHIINTLNLLFPEGELWFCRVYNKALPLITDARLRDEAEGFLRQEAVHSRSHGGVLKHYYDRHGIDTKPFTQKLNRLFTRVLGEQPLGLKIGHTRFWLRQQLAVIASLEHFFGYLGNWVLNAHGLDAGKADPTMVDLLRWHGAEEVEHRTVAFDIYRHMGGSYPERCVHMAFVIVLLLYYITTGAKFMYRLDPGAGRYPGFAMAWRQGSRRGHLPSFWKVIGAALRYFKPGYTPHHEGSTEQALAYLARSPAARAAAHGGNWGATKGA
>NZ_CP013377.1|WP_069243734.1|723571_725359_-|SDR-family-oxidoreductase
MQPLSDEAPLALFESLHNETAVASGDLTLAVRTWGDPARSPVVLVHGYPDDSSVWQQVAPLLARKHYVIAYDVRGAGLSSAPKHTADYRLAKLTDDFIAVIDALCPGRAVHLIAHDWGSIQGWEFVTEPRLAGRIASYTSCSGPCLDHVGFWLRERLLPPTPASLGKLGGQLLRSWYVYLFHLPFIPELGWRLWLGRAWPGLLRRIEKTPVAPRARQADDGARGVRLYRANFIRCLFTPRERYAHAPVQTIVPLRDKYVSPALSENLSRWVPHYYRREVAAGHWLPLADPARFAGLAEQLIDAVESGDEPPALANARRRATSGRFSGKVAVVTGAGSGIGRCAALAFAREGATVVAVDIDLASAERTALLIGLTGAQAHAKRVDVGSADEMEALATWVGSALGGADVVVNNAGIGMAGGILDTSTRHWERILHVNLWGVIHGSRLFAQQMAARGTGGHIVNTASAAAFGPSRDLPAYATTKAAVLMLSECMRAELAEQGIGVTAVCPGFAETGIMASTQYAGASTQDEARLRKRATKLYQMRGLKPETVAQAMVDGVLRNRPVVAVGGEAHALRFVGRFMPWLGRMIARVSMASH
>NZ_CP013377.1|WP_059517032.1|725403_726300_-|aminopeptidase-P-family-protein
MSDHPLPEVHLDELPQFRAVQQLAYRCVETVGGMLYPGITEKEAARLLTEWLQDHGVHDWLHKPFAWFGDRTAFEGFSGLKHMGGFNLAFFPSNRQLETDMPVILDVAPVLDGIVADVGYAHCLGRNPILEQLQDDLMDHRDMIVRLVKARRPMAEVAQEVDALCRRQGVEPRHKAYPFKVLAHRVAKIHKLSKPRFVARFGLNATRNLLLDQGRTAKQQGWSPLWSIDRRSEHAPVPGLWAVEPHLGFSGVGAKFEELLVITDDDAYWLDDDLPHVRRWQRRLAERSQAAATAPATA
>NZ_CP013377.1|WP_081056819.1|726573_726771_+|hypothetical-protein
MDGAHLAYALRRHRPDSILVSVTVVGQRVEIDVFDDGHMEVSRFVGNEDIEGGAELIDSIVASAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2163326 : 2227527

Burkholderia_phage(50.0%)

tRNA,head,holin,integrase,tail,terminase,capsid,portal

attL 2164877:2164904|attR 2219572:2219599

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069244078.1\|2163326_2164622_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.3e-60	35.8
2164877:2164904	attL	NA	NA	NA	NA
WP_069244079.1\|2164990_2165710_-	SOS response-associated peptidase family protein	Q8W6R8	Burkholderia_virus	7.9e-98	73.1
WP_069244359.1\|2165734_2166094_-	hypothetical protein	NA	NA	NA	NA
WP_059514172.1\|2166228_2166855_+	hypothetical protein	Q8W6R9	Burkholderia_virus	4.4e-44	46.6
WP_059514150.1\|2167311_2168178_-	hypothetical protein	Q3HQV2	Burkholderia_phage	6.7e-128	77.1
WP_059514147.1\|2168239_2168731_-	DUF2514 family protein	C7BGD9	Burkholderia_phage	7.6e-52	72.7
WP_059514144.1\|2168727_2169225_-	lysozyme	Q3HQU9	Burkholderia_phage	7.9e-73	80.6
WP_059514141.1\|2169217_2169430_-\|holin	holin	Q3HQU8	Burkholderia_phage	1.5e-28	95.7
WP_059514138.1\|2169472_2170192_-	hypothetical protein	C7BGD6	Burkholderia_phage	6.0e-98	72.0
WP_069244080.1\|2170191_2170506_-	hypothetical protein	C7BGD5	Burkholderia_phage	2.9e-41	78.4
WP_155741115.1\|2170499_2171225_-	DUF1983 domain-containing protein	A4JX16	Burkholderia_virus	3.0e-73	78.0
WP_069244360.1\|2177911_2178475_-\|tail	tail assembly protein	C7BGD3	Burkholderia_phage	2.9e-87	89.8
WP_069244081.1\|2178471_2179224_-	C40 family peptidase	C7BGD2	Burkholderia_phage	6.9e-129	83.5
WP_069244082.1\|2179273_2179957_-\|tail	phage minor tail protein L	Q3HQU2	Burkholderia_phage	1.5e-114	89.9
WP_081337593.1\|2179956_2181636_-\|tail	tail fiber domain-containing protein	C7BGD0	Burkholderia_phage	9.0e-44	37.8
WP_069244084.1\|2181644_2181983_-\|tail	phage tail protein	C7BGC9	Burkholderia_phage	4.6e-56	92.0
WP_069244085.1\|2181982_2186083_-\|tail	phage tail tape measure protein	C7BGC8	Burkholderia_phage	0.0e+00	80.0
WP_059514113.1\|2186096_2186378_-	DUF4035 domain-containing protein	Q3HQT8	Burkholderia_phage	1.2e-33	80.6
WP_069244086.1\|2186374_2186839_-\|tail	phage tail protein	Q3HQT7	Burkholderia_phage	1.6e-64	77.8
WP_059514107.1\|2186869_2187334_-	hypothetical protein	Q3HQT6	Burkholderia_phage	1.4e-68	87.7
WP_069244087.1\|2187391_2187736_-	DUF3168 domain-containing protein	Q3HQT5	Burkholderia_phage	5.3e-44	79.8
WP_069244088.1\|2187732_2188155_-	HK97 gp10 family phage protein	Q3HQT4	Burkholderia_phage	1.9e-59	86.4
WP_081074386.1\|2188147_2188474_-\|head	phage head closure protein	A4JX04	Burkholderia_virus	1.5e-51	89.8
WP_059514096.1\|2188473_2189040_-	hypothetical protein	A4JX03	Burkholderia_virus	3.5e-77	76.1
WP_059514170.1\|2189046_2189232_-	hypothetical protein	Q8W6U4	Burkholderia_virus	6.4e-12	63.9
WP_069244089.1\|2189291_2190599_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	1.2e-200	85.3
WP_069244090.1\|2190699_2191668_-	S49 family peptidase	A4JX00	Burkholderia_virus	3.3e-160	93.5
WP_059514087.1\|2191664_2192924_-\|portal	phage portal protein	Q8W6U7	Burkholderia_virus	3.4e-229	94.0
WP_059514084.1\|2192928_2193114_-	hypothetical protein	Q8W6U8	Burkholderia_virus	3.9e-17	86.9
WP_069244091.1\|2193110_2194823_-\|terminase	terminase large subunit	Q8W6U9	Burkholderia_virus	0.0e+00	96.1
WP_081337594.1\|2194832_2195318_-\|terminase	phage terminase small subunit P27 family	Q8W6V0	Burkholderia_virus	1.2e-86	96.9
WP_081337595.1\|2195465_2195822_-	HNH endonuclease	Q8W6N0	Burkholderia_virus	3.0e-58	87.3
WP_059771351.1\|2195862_2196045_+	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	7.7e-18	70.0
WP_069244092.1\|2196069_2196465_+	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	3.1e-19	42.9
WP_155774276.1\|2196927_2199237_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_069244094.1\|2199644_2200070_-	hypothetical protein	NA	NA	NA	NA
WP_069244095.1\|2200118_2200367_-\|portal	phage portal protein	Q3HR04	Burkholderia_phage	8.8e-41	93.9
WP_069244096.1\|2200363_2200873_-	hypothetical protein	NA	NA	NA	NA
WP_069244362.1\|2200869_2201151_-	hypothetical protein	Q3HR03	Burkholderia_phage	5.9e-41	90.1
WP_069244097.1\|2201204_2201648_-	DUF1364 family protein	Q3HR02	Burkholderia_phage	2.2e-74	87.1
WP_069244098.1\|2201644_2202226_-	helix-turn-helix transcriptional regulator	Q3HR01	Burkholderia_phage	3.6e-77	74.1
WP_069244099.1\|2202222_2202693_-	hypothetical protein	Q3HR00	Burkholderia_phage	2.3e-74	90.4
WP_069244100.1\|2202692_2203256_-	hypothetical protein	Q3HQZ9	Burkholderia_phage	6.6e-92	87.7
WP_069244101.1\|2203425_2204433_-	helix-turn-helix domain-containing protein	Q8W6P0	Burkholderia_virus	3.9e-103	64.5
WP_059601782.1\|2204429_2205284_-	hypothetical protein	Q8W6P2	Burkholderia_virus	5.3e-101	70.8
WP_155741112.1\|2205602_2205776_-	hypothetical protein	Q3HQZ4	Burkholderia_phage	4.9e-06	84.6
WP_059514156.1\|2205858_2206140_-	hypothetical protein	A0A1S5NNI6	Burkholderia_phage	1.3e-16	52.2
WP_069244102.1\|2206301_2206553_+	hypothetical protein	NA	NA	NA	NA
WP_059601776.1\|2206715_2206907_-	hypothetical protein	NA	NA	NA	NA
WP_155774277.1\|2208092_2208566_+	hypothetical protein	NA	NA	NA	NA
WP_155774278.1\|2208550_2209528_+	hypothetical protein	NA	NA	NA	NA
WP_155774279.1\|2209929_2210526_+	hypothetical protein	NA	NA	NA	NA
WP_069244104.1\|2211370_2211595_+	hypothetical protein	NA	NA	NA	NA
WP_069244105.1\|2211619_2211826_+	hypothetical protein	NA	NA	NA	NA
WP_167361719.1\|2211906_2212083_+	hypothetical protein	Q3HQX5	Burkholderia_phage	1.9e-13	64.3
WP_155774280.1\|2212386_2213031_-	hypothetical protein	Q6JII1	Burkholderia_virus	5.4e-05	33.1
WP_069244106.1\|2213241_2214099_+	hypothetical protein	A0A2H4J418	uncultured_Caudovirales_phage	2.4e-69	48.0
WP_069244107.1\|2214102_2215128_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	1.9e-113	60.8
WP_069244108.1\|2215140_2215479_+	hypothetical protein	NA	NA	NA	NA
WP_155774281.1\|2215487_2216705_+	hypothetical protein	Q8HAK2	Burkholderia_phage	5.0e-36	43.8
WP_069244111.1\|2217303_2217951_+	hypothetical protein	Q5QF30	Pseudomonas_virus	6.1e-33	43.5
WP_059601750.1\|2217934_2218144_-	hypothetical protein	A9YWV5	Burkholderia_phage	8.2e-24	75.4
WP_081056893.1\|2218180_2218390_+	excisionase	Q774Z6	Bordetella_phage	2.0e-25	79.7
WP_069244112.1\|2218365_2219547_+\|integrase	tyrosine-type recombinase/integrase	Q774Z5	Bordetella_phage	1.0e-131	59.0
WP_080293055.1\|2219776_2222191_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.9e-35	32.0
2219572:2219599	attR	NA	NA	NA	NA
WP_059518974.1\|2222279_2224157_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-67	37.2
WP_009695715.1\|2224229_2224676_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.3e-21	47.3
WP_004190342.1\|2224847_2225060_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_069244113.1\|2225135_2226356_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_009695713.1\|2226486_2227527_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.5e-94	53.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013378

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013378_1

2045341-2045436

Orphan

Consensus_repeat	Method
CGCTGGCGCCGGTGCAGGGCGTGGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013378_1

>merge|NZ_CP013378|1|2045341-2045436|CRISPRCasFinder
CGCTGGCGCCGGTGCAGGGCGTGGTGAGCCAGGTCACGGGTGCGCTCGGCAGCCTCGGCGGCGCGAATCCGCTGGCGCCGGTGCAGGGCGTCGTGA

>NZ_CP013378|1|1|2045341-2045436|CRISPRCasFinder
CGCTGGCGCCGGTGCAGGGCGTGGTGA	GCCAGGTCACGGGTGCGCTCGGCAGCCTCGGCGGCGCGAATC
CGCTGGCGCCGGTGCAGGGCGTCGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013378.1\|WP_069245465.1\|2047414_2047930_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176866
NZ_CP013378.1\|WP_009692413.1\|2040195_2040975_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP013378.1\|WP_040126745.1\|2029301_2029667_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NZ_CP013378.1\|WP_004186661.1\|2056323_2056617_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP013378.1\|WP_069244821.1\|2038862_2039825_-\|ornithine-cyclodeaminase-family-protein	unknown	unknown	gnl\|CDD\|225280
NZ_CP013378.1\|WP_069244824.1\|2046744_2047377_+\|DUF1571-domain-containing-protein	unknown	unknown	gnl\|CDD\|377879
NZ_CP013378.1\|WP_059519405.1\|2029804_2031895_+\|D-(-)-3-hydroxybutyrate-oligomer-hydrolase	unknown	unknown	gnl\|CDD\|313759
NZ_CP013378.1\|WP_069244820.1\|2038047_2038866_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225512
NZ_CP013378.1\|WP_059602698.1\|2032512_2034360_+\|peptidase-S1	unknown	unknown	gnl\|CDD\|225490
NZ_CP013378.1\|WP_069244828.1\|2052998_2054132_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271320
NZ_CP013378.1\|WP_069244818.1\|2035597_2037040_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP013378.1\|WP_009690400.1\|2034501_2035290_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP013378.1\|WP_069244826.1\|2049015_2050617_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP013378.1\|WP_069244819.1\|2037161_2037893_-\|DsbA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239322
NZ_CP013378.1\|WP_069244829.1\|2054197_2055664_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|335962
NZ_CP013378.1\|WP_069244822.1\|2041042_2042287_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP013378.1\|WP_069244827.1\|2050619_2051654_-\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270261
NZ_CP013378.1\|WP_069245466.1\|2051688_2052987_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
NZ_CP013378.1\|WP_069245464.1\|2046334_2046748_+\|quinol-oxidase	unknown	unknown	gnl\|CDD\|259885
NZ_CP013378.1\|WP_069244825.1\|2047943_2048993_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
NZ_CP013378.1\|WP_069245465.1\|2047414_2047930_+\|SRPBCC-family-protein	gnl\|CDD\|176866	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	6.22242e-72
NZ_CP013378.1\|WP_009692413.1\|2040195_2040975_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.77311e-115
NZ_CP013378.1\|WP_040126745.1\|2029301_2029667_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	1.59423e-09
NZ_CP013378.1\|WP_004186661.1\|2056323_2056617_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	2.59054e-54
NZ_CP013378.1\|WP_069244821.1\|2038862_2039825_-\|ornithine-cyclodeaminase-family-protein	gnl\|CDD\|225280	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism].	1.07738e-64
NZ_CP013378.1\|WP_069244824.1\|2046744_2047377_+\|DUF1571-domain-containing-protein	gnl\|CDD\|377879	pfam07608, DUF1571, Protein of unknown function (DUF1571). A family of paralogous proteins in Rhodopirellula baltica.	5.08287e-05
NZ_CP013378.1\|WP_059519405.1\|2029804_2031895_+\|D-(-)-3-hydroxybutyrate-oligomer-hydrolase	gnl\|CDD\|313759	pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH). D-(-)-3-hydroxybutyrate oligomer hydrolase (also known as 3HB-oligomer hydrolase) functions in the degradation of poly-3-hydroxybutyrate (PHB). It catalyzes the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers.	0
NZ_CP013378.1\|WP_069244820.1\|2038047_2038866_-\|PAS-domain-containing-protein	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	3.96156e-69
NZ_CP013378.1\|WP_059602698.1\|2032512_2034360_+\|peptidase-S1	gnl\|CDD\|225490	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism].	2.31724e-124
NZ_CP013378.1\|WP_069244828.1\|2052998_2054132_-\|hypothetical-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	6.4243e-06
NZ_CP013378.1\|WP_069244818.1\|2035597_2037040_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.23636e-66
NZ_CP013378.1\|WP_009690400.1\|2034501_2035290_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.43721e-24
NZ_CP013378.1\|WP_069244826.1\|2049015_2050617_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.80116e-88
NZ_CP013378.1\|WP_069244819.1\|2037161_2037893_-\|DsbA-family-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	6.54796e-83
NZ_CP013378.1\|WP_069244829.1\|2054197_2055664_-\|carbohydrate-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	9.84135e-99
NZ_CP013378.1\|WP_069244822.1\|2041042_2042287_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	8.06643e-49
NZ_CP013378.1\|WP_069244827.1\|2050619_2051654_-\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270261	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic protein (Fbp) has high affinities for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.05503e-139
NZ_CP013378.1\|WP_069245466.1\|2051688_2052987_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	2.07233e-148
NZ_CP013378.1\|WP_069245464.1\|2046334_2046748_+\|quinol-oxidase	gnl\|CDD\|259885	cd04223, N2OR_C, The C-terminal cupredoxin domain of Nitrous-oxide reductase. Nitrous-oxide reductase participates in nitrogen metabolism and catalyzes the last step in dissimilatory nitrate reduction, the two-electron reduction of N2O to N2. It contains copper ions as cofactors in the form of a binuclear CuA center at the site of electron entry and a tetranuclear CuZ centre at the active site. The C-terminus of Nitrous-oxide reductase is a cupredoxin domain.	2.001e-05
NZ_CP013378.1\|WP_069244825.1\|2047943_2048993_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.40453e-114

>NZ_CP013378.1|WP_069244822.1|2041042_2042287_+|FAD-binding-oxidoreductase
MDFDVIVLGAGIVGVSSALHLQDRGLRVALVDRRGPGEETSHGNAGLIERSSVVPYAFPRRLGTLLRYARNRSVDLYWDYRALPAYAGWLARFWRESSPPRLAAAARDLLPLVAASVVEHDALLARTDAQPLVHDGGWIEAFRSPALFDAETRVQQRVAAEHGLRMTVLDARALREREPGISDAFCGAFHWQDPKTVSSPGGLTKAYARLFERGGGTLVRGDATTLVQLRDGWRVATEHGPVAARSAVVALGPWSDHVFAPLGYRIPLRAKRGYHMHYRPTRTPLNVPVCDTEQGFVVAPMEGGRLRLTTGVEIALRGAPPTGVQLARAEPLARDAFGIGERLDPEPWLGMRPCTPDMRPVIGAAPRHRHLWFAFGHCHHGLTLGPATGRLLAEMMTGAPTYIDPRPYRPERFG
>NZ_CP013378.1|WP_009692413.1|2040195_2040975_+|ABC-transporter-substrate-binding-protein
MNWKLSICAAAALACSAIAAHAEQATLRFGIEAAYPPFESKTPAGQLQGFDVDIGNAVCAKLNMKCAWVENSFDGLIPALQARKFDAINSAMNITAKRKQSIDFTPAIYVVPIVMVAKRGSPLRPDVASLRGKHVGVLQGSSQEDFLKAHWANAGVAVVSYQDQDQIYADLVAGRLDAAVQEAQTAQDGFLDKPAGRDYQIVGDPLKDPATLGEGTGFGMRKGDKALQAKIVGALDALKKDGTLSALSQKYFKRDIIAR
>NZ_CP013378.1|WP_069244821.1|2038862_2039825_-|ornithine-cyclodeaminase-family-protein
MTQTAPTLPLTVDEAAVRAALPSLDVLGTLRRMFASLASANAVQPPQTLTLFPGQAGDFITYLGALADEQVFGAKLSPYIVTGGRPIVTAWTALMSMRTGQPLMWCDAGQLTVERTAGTTALAVDCLAPRDARRLAIVGAGAVGLAHLRHAAALRDWDTIRVYSPALAGDTALQATLAQLDPRARPADGIAACVRDADVVMLCTSSGTPVLGDDMLTRPALVTSISTNVARAHEIPPAWLPDMDVYCDYRHTTPASAGEMQIAAAEHGWTPERIVGDLPALVAGTCAAPSRTRHAFFRSIGLGLEDIAIAHALYTHLMRA
>NZ_CP013378.1|WP_069244820.1|2038047_2038866_-|PAS-domain-containing-protein
MSVTRPRGRYNGATAARREHAHLRAADAPAAGLPAADAPARRPDMPPGSRPPEIAIPMRKKKSPVKDLLLTRYAPLADGIAALFFPYAEVVIHDLHDQTVLYLANNLSKREVGDDSALEEIDHSARERVIGPYEKLNWDGRRMRCVSNVLFDDDGRPAGMMCINFNIAVFDEVRATLDLFIKGAGVVAQPDELFRDDWQERINTFLHGWLRERQIGLNGLTREHRRELVEALHAEGAFRGKSAANYVANVLGMGRATVYKHLKHLKDTQGDA
>NZ_CP013378.1|WP_069244819.1|2037161_2037893_-|DsbA-family-oxidoreductase
MPTAPAPTARPTLTVEIWSDLICPWCWIGKRRFDEALAAFAHADRVDVALRAYRLMPGQPVEPVEAMLAGKYRMSPAQVDQMLRQVTDAAASVGLRYDLPGTFVGDTLDGHRLVKLAEATGRAHALTERLYRAYFCEHGSLFDHAELADFAVDAGLERSAVESVLRSDAYRDEVDADIARAAQIGGRGVPLFVFGGRYAVSGAQPADVFAQALDQAWRDGVVEPAGGDAAACGPDGCELPGRA
>NZ_CP013378.1|WP_069244818.1|2035597_2037040_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MTHGIHGERRWYALIVLCLGVLMIVLDSTIVNVALPSISTDLRFTETALVWVVNAYLLTFGGCLLLGGRLGDLYGQRRMFLAGLVVFTLASLACGLAQSQAMLIAARAVQGFGGAIVSAVSLSLIMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLLTSTLSWHWIFLVNLPIGLAVYALCVALLPRMRAPAGAARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAVVLFALFVAIEARVAHPLMPLTLFGARNVALANVIGVMWAAAMFAWFFLSALYMQRVLGYAPLQVGLAFLPANLIMAAFSLGLSARIVMRFGIRGPLAAGLLIAAAGLALFSRAPVDGGFVWHVLPGMTLLGIGAGIAFNPMLLAAMSDVDPADSGLASGIVNTAFMMGGALGLAVLASLAAARTDALTAARAAPLDALNGGYHTAFAFGAAFAAAAALIGLALRARRQDAVEGGVGPAMH
>NZ_CP013378.1|WP_009690400.1|2034501_2035290_-|sulfite-exporter-TauE/SafE-family-protein
MSLPHIDLLYSLSGLFVGVLVGLTGVGGGSLMTPILVLLFGVHPATAVGTDLLYAAATKATGTLVHGLKGSIDWRITGRLAAGSVPASAVTLWVLHTHGVNSPGTARTIQLVLGIALLLTSLALIFRPQLAAFAARNPLAPSPARTLWSTVLTGAVLGVLVSMTSVGAGAIGVTVLLLLYPALATTRIVGSDIAHAVPLTLVAGMGHWLLGSVDWSMLLSLLLGSLPGIVLGSLLSARAPERLLRNLLAATLVAVGVRLVLA
>NZ_CP013378.1|WP_059602698.1|2032512_2034360_+|peptidase-S1
MTTLKSLKDGFALFGTTLSAPLAAATAAALLVTGCGGDDGPSPAAAAAAAAATAPTSGSGSSSAGSNATTAATADQPYVDTDVYGTGPNDAVTDSTEGAAVVHRQITIGGKTVKYTATTGHLTTIDPITSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGSSSVYLLLGSFGPKRLQSSFPNFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSAAIAPAKNKDFWGTDQDARSIDRFIQRYLTKYSRWNSPKFLYGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGTFPTLAADAFYWKKTTLNPTPTDLDAYMVQARNYADNTLAPLAQKPNPQDGGFVNVRLNLNLQTAQQMGSYIGTDPTSLIQTFGNPAALGNVPSSDDNPPYTFFLTLVPGTQIGQYDGRANFTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYINTDLKYTSTSSFVDLNDQVFNNWDFSHIDPTGANKGGGNTLYTAGDLASTMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPTIKAQNLTIKNYPSGHMIYLNDASRTALKADLGNFYDGILANRTALQRVLKLQARTQQLRQQQLQQQGR
>NZ_CP013378.1|WP_059519405.1|2029804_2031895_+|D-(-)-3-hydroxybutyrate-oligomer-hydrolase
MTRLGWGRRILFGAALAAVAVLGACNGDETAERNRLPGFVAGSVRTTAYDGASDDLLTAGLGKTGLASATAPAFANPSRPTAAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNDTLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPAQPCIVTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTVTLIDGTLANAVLAGNASLFTANVSSADLSTYNSQYPNRYAFKHAHSQQNPEQDWGRVTLQSVEFAYWALNEQFGPLIDGTHRGVRYRAGDITTIAASVSNGGGASLAAAEQDSRGWITAVVVGEPQVNVRMSPNAVVRSGGQPVPSFGRPLADYATLANLLEPCAAASASLAGAPYLTALPAATTQSIRTQRCATLAAAGLVSGSDTQSQAADALAQLHAAGYLADSDLLQAPMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTNAATGAVAPPAASPMPAVFGAGNGVPPTAGINLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLGMPANVDAVRVNANLQGKPAIIVQGRSDALVPVNHASRAYVAQNGISEGSRSRLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNLQALNLMWRHLKNGAPLPPSQVIRTVPRGGTPGAAPALTSANLPPISGAPGANAITAGAGVIDVPL
>NZ_CP013378.1|WP_040126745.1|2029301_2029667_+|BON-domain-containing-protein
MKSIVLRALGVAAVAACLSGSVYAQSSEPAATEAPAAATSAPKAAAKTAKKANRKLGYAVRKAISKESGENVSNLVVRSKGGAITLEGTMPDQSQIDKAEAAAKGVKGVTSVTNKLTVQQQ
>NZ_CP013378.1|WP_069245464.1|2046334_2046748_+|quinol-oxidase
MKATTAVLLVALAMGAGLARADDDTPVRVPVDADGVQRVAIVGGSYFFRPKHVIVRAQLPVELTVSAEPGIVPHSFEIDAPQAGIAIHTELGTTPKTFRFTPTQPGRFAYYCTHRLLFFKSHRERGMEGVLDVEAAP
>NZ_CP013378.1|WP_069244824.1|2046744_2047377_+|DUF1571-domain-containing-protein
MIAALLAASLLGASMTADPVTVAQTHFEHIRSYRATIRSSSRSGERTEMHYAYLKPGFVRMDFVEPHRGAVLKYDPDDGKVRLRPFGEHTLPALTLSPANPLVRDRSGHRVDRSDVGELLRNVHALQQGGATVTEGEETVGGRAALRVSVTGAPAHAVDGVHRYRLWLDTQDGFPLKVVSFAGDDDRPLETVTLDDVEIDVAFPDRFFAP
>NZ_CP013378.1|WP_069245465.1|2047414_2047930_+|SRPBCC-family-protein
MAEYRFSTTWRVDAPLAAVWDAIYQVDRWPDWWKGAVRTVELEPGDARGVGALHRYTWKGALPYRLSFDMRVRRVEPPHTLEGRASGAIEGDGRWRFAADGAGTVVRYDWHIRTQARWMNWLEPIARPVFKWNHDVVMREGAKGLARLLGATVESDGRIYRPVAGAGCAES
>NZ_CP013378.1|WP_069244825.1|2047943_2048993_-|ABC-transporter-ATP-binding-protein
MSELRIHGLSKSFGSHTVLHDIDLTVRRGSRLALLGPSGSGKTTLLRVLCGFERAERGIVEIDGRRVAAPGLHLPPEQRRIGYVPQEGALFPHLSVADNIAFGLPRAARRRRHRVDALLEMVGLPASYASRAPQQLSGGQQQRVALARALAPEPSLVILDEPFSALDTSLRHETRSAVADALAAAGATSVLVTHDQPEAMTLGDEVAVLWQGRLVQTAAPQTLYRQPVTRDVASFVGQAVLLAGQVRAGHIACALGELPLVALLPDGPADAMLRPEQIGIVPIADPDAARGHAATVEATQFAGQDADVLARVEAAPDTLVRARVPGHRCPTVGERVALVVDGAVMAYAR
>NZ_CP013378.1|WP_069244826.1|2049015_2050617_-|iron-ABC-transporter-permease
MSDAVSRTARAAHDDDARGAARRRPSRALVAAAACGPLAILLPLGFTLYRAATFGVDDAIELLWRPLVGELLVNTLSITLAATLVCALLGTAVAWFIERTDLPGRPLWTALAAAPLAVPPFITSYAWVSLSLDLQDFLGALIVLGSAYFPLVYLPVAAALRELDPALEESARTLGCSPWRTFFRVVLPQLRPALCGGMLLVALGVLSEFGAFQLLRFRTFTTEIYAEYRTAFDGGGASLLGCVLIALCLLCLAIEARARGRARYGHTHRAARRVAMRYPLGRGRLAVVAAFAALAAATLGVPLATIGYWLTQQGAAAVTPADVSPELLWQATLASSGYGLAAAAVTTLLALPLAFLLVRHPGRIATLLERTAMTVQGVPGIVVALATVSITVRLLQPLYQSAPALVAAYAILFLPLAAVSVRAALSHVQVRLEETARALGLGWRATLTRVVLPLAAPGLGAAATMVFVSVVTELNATLLLSPIGTRTLATQVWSDTATLAFAAAAPYAALLVALSLAASGLLFLLLGRASVRR
>NZ_CP013378.1|WP_069244827.1|2050619_2051654_-|iron-ABC-transporter-substrate-binding-protein
MNTLPVSRPVRHLISAAAAALMLTGALTAMPARAATLTLYNAQHEQVVNQLVKDFEAQSGITVKVRSGEGPALAAQLVTEGDRTPADVYFTENSPELVLLDHKGLLAKTDAATLQAVPARYNPADGNWVGVLARENVLVYNTAKLQPQQLPASLLDLAKPEWKGKVGIAPSDADFLPVVSAVLALHGEAATLQWLKGLKTNAQIFDDDEGVTAAVNRGGVVTGVINNYYWDRLHAELGDKSTRSAIYHFGRGDVGAAVNVSGAAVLKASKHQPEAQQFVAYLVSERAQKLMANGHVSFEYPLRPGVAPDPILKPFNELSPPSLSFEQLGDDSQAGKLLRQAGLL
>NZ_CP013378.1|WP_069245466.1|2051688_2052987_-|deferrochelatase/peroxidase-EfeB
MTDDSNPPSRAARRGFLKAGGAAVAAGLAATAMPAARAADAGAPQAAAHDDDIEPFYGKHQSGITTPQQRNAYFAALDLTTTRREDVIALLKTWTDAAARLTRGEPAQPLPTSGADDAPPADSGDALGIGPACLTITFGFGPGLFAAAGKDRYGLAKQRPAALVDLPRFNGDQLLPEKTGGDLFIQACANDAQVAFHAVRQLARLGGKTVQMRWGQAGFTSGKPGETPRNLMGFKDGTMNPSRDDPAAMNAFVWAGSEGPAWMNGGTYTVVRRIRITLEHWDNTELGFQEQVFGRRKYSGAPLGGKHEFEALDLDAVDKDGNPVIPDNAHARLASPQMNDGAQILRRAYSYNDSTNFYIERWPPWRQQTEYDAGLMFVAHQRDPRKGFIPINEKLAKLDIMNQFTTHVGSAIFACPPGAQPGSYIGAALFEA
>NZ_CP013378.1|WP_069244828.1|2052998_2054132_-|hypothetical-protein
MIRSAPLRHLATGALAAAALTAAAAARAEPQGFLETLHRHTLLVNTVPDNGDQNPYAIAVAPASAGTIQQGDVLVDNFNNAANLQGTGSTIVDYRPSTKQMSLFATIPRDLQACPGGVGLSTAMTMLKSGWVIVGSTPSNDGTTNTKGAGCMIVLDPHGKVASVWSSPNINDPWGNMAVVDRGDSATLFVSMAGFGVGGADGNPPVYKQATVLRLDLDVPAGKPPAIRQETVVASGLGAQADKGVFLVGPTGLALSGDQQKLYVSDAIGNRIVEIDDPLTRDTSAGVGRPITADGFLRRPLALATAPNGHLLATNALNGQVVEIDPVAGKQLYARWIDTDKAQSPPGNGDLFGIAMTPAGDGFYYVQDDVNTLMLAK
>NZ_CP013378.1|WP_069244829.1|2054197_2055664_-|carbohydrate-porin
MKFASFPGDRIHARMRPAACAAVLACASFASGAAFADTPVDAQPDASEADRAIQAKPTDMWTGIWTRQNLLGDMGGIRPWLGKYGATLQITETSEYLANLRGGLNRGGTYDGLTTATLTVDTQKAIGLPGGTFNVSALQIHGSNLSARNLGTLNTASGIEAQDTTRLWELWYQQSFLDKRVDVKIGQQSLDQEFMVSTYGNTFVNTMFGWPALPSYDLPNGGPAYPLAGLGVRVRAQIAPKLTALAGVFDGDPLGNNPNNLSGTNFNLHNGALYIGELQYALNQPSDGEMDTGRSNGLPGTYKIGVWYHNGRFADQNLGTDGLSLADPASNGSAQQHHGDYSFYAVADQMVWRPDPSGPQSLGVFARVMGAPGDRNLVSFAANAGVVLKAPFAGRDNDSVGLAVTYIQVGSHVTDLDRSARLFASGPYGVRTRETALEATYQYQVTPWWVIQADAQYTFNAGAGQNPNDATQPLRNTFVVGARTTITF
>NZ_CP013378.1|WP_004186661.1|2056323_2056617_+|co-chaperone-GroES
MNLRPLHDRVIVKRLDQETKTASGIVIPDAAAEKPDQGEVLAIGPGKRDDKGAPIALDVKVGDRVLFGKYAGQTVKVDGQELLVMREEDIMAVVNAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	995968-996009	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	996361-996402	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	744433-744474	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1149992-1150033	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	995975-996016	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	996368-996409	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1247827-1247868	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1247771-1247812	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	925389-925430	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	925782-925823	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	736397-736438	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	884741-884782	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	885134-885175	9	0.786
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1248116-1248157	10	0.762
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	956319-956360	10	0.762
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1248260-1248301	10	0.762
NZ_CP013378_1	1.1\|2045368\|42\|NZ_CP013378\|CRISPRCasFinder	2045368-2045409	42	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	995949-995990	10	0.762

1. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

2. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

3. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

4. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

5. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

6. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

7. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

8. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

9. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

10. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

11. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

12. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

13. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.786

gccaggtcacgggtgcgctcggcagcctcggcggcg---cgaatc	CRISPR spacer
gtacggtgacgggtgcgctcggcagcgtcggcggcggttcgg---	Protospacer
*.  *** ****************** *********   **.

14. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.762

gccaggtcacgggtgcgctcggcagcctcggcggcg----cgaatc	CRISPR spacer
gtaccgtgacgggtgcgctcggcagcgtcggcggcggttccg----	Protospacer
*.   ** ****************** *********    **

15. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.762

gccaggtcacgggtgcgctcggcagcctcggcggcg----cgaatc	CRISPR spacer
gtaccgtgacgggtgcgctcggcagcgtcggcggcggttccg----	Protospacer
*.   ** ****************** *********    **

16. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.762

gccaggtcacgggtgcgctcggcagcctcggcggcg----cgaatc	CRISPR spacer
gtaccgtgacgggtgcgctcggcagcgtcggcggcggttccg----	Protospacer
*.   ** ****************** *********    **

17. spacer 1.1|2045368|42|NZ_CP013378|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.762

gccaggtcacgggtgcgctcggcagcctcggcggcg----cgaatc	CRISPR spacer
gtaccgtgacgggtgcgctcggcagcgtcggcggcggttccg----	Protospacer
*.   ** ****************** *********    **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

353763 : 409146

Micromonas_sp._RCC1109_virus(33.33%)

transposase,plate,integrase

attL 352125:352140|attR 363946:363961

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
352125:352140	attL	NA	NA	NA	NA
WP_069245420.1\|353763_355392_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_009687734.1\|355400_356270_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_081056857.1\|356247_356775_+	TniQ family protein	NA	NA	NA	NA
WP_155774308.1\|356780_357032_-	hypothetical protein	NA	NA	NA	NA
WP_081055736.1\|357166_358351_-	MFS transporter	NA	NA	NA	NA
WP_009691857.1\|358854_359880_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_009691858.1\|360310_361204_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059517726.1\|361565_361832_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_059517724.1\|362410_363361_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059517722.1\|363442_364855_+	FAD-dependent tricarballylate dehydrogenase TcuA	NA	NA	NA	NA
363946:363961	attR	NA	NA	NA	NA
WP_009691863.1\|364841_366014_+	tricarballylate utilization 4Fe-4S protein TcuB	NA	NA	NA	NA
WP_059517721.1\|366155_367343_-	arabinose transporter	NA	NA	NA	NA
WP_081337624.1\|367426_368788_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_081074434.1\|368763_369306_+\|transposase	transposase	NA	NA	NA	NA
WP_017335001.1\|369281_369632_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.9e-17	39.4
WP_009687447.1\|371470_372433_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069245421.1\|372817_373699_+	3-carboxyethylcatechol 2,3-dioxygenase	NA	NA	NA	NA
WP_069244450.1\|373798_375310_+	4-hydroxyphenylacetate 3-hydroxylase	NA	NA	NA	NA
WP_009687450.1\|375373_375901_+	flavin reductase family protein	NA	NA	NA	NA
WP_009687451.1\|375939_376773_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_069244451.1\|376783_377737_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	1.3e-36	36.8
WP_059601500.1\|377733_378771_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	1.5e-44	34.5
WP_059601502.1\|378861_380208_+	MFS transporter	NA	NA	NA	NA
WP_069244452.1\|380354_382109_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_009689576.1\|382187_383057_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_155755015.1\|383346_383601_-	hypothetical protein	NA	NA	NA	NA
WP_009689574.1\|383697_385221_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.2e-149	53.0
WP_069244453.1\|385233_386001_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-70	52.9
WP_081074370.1\|386865_387414_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_009689571.1\|387547_387943_+	hypothetical protein	NA	NA	NA	NA
WP_059601506.1\|388369_388630_+	hypothetical protein	NA	NA	NA	NA
WP_144397680.1\|388700_389381_+	OmpA family protein	NA	NA	NA	NA
WP_081337625.1\|389830_394309_+	hypothetical protein	NA	NA	NA	NA
WP_069244456.1\|395109_395541_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_069244457.1\|395554_398275_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.3e-88	31.6
WP_009691978.1\|398410_398896_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_069244458.1\|399066_400812_-	OmpA family protein	NA	NA	NA	NA
WP_059601109.1\|400808_401540_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069244459.1\|401536_402901_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_038455520.1\|403474_403987_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_069244460.1\|404060_405593_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_059601124.1\|405754_407329_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_069244461.1\|407340_409146_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

1922876 : 1931887

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009693601.1\|1922876_1924823_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.1e-146	50.6
WP_009693602.1\|1925099_1926233_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	2.4e-24	38.9
WP_069244795.1\|1926237_1928124_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	1.7e-51	36.2
WP_009690782.1\|1928228_1929044_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.5e-36	33.3
WP_009690783.1\|1929090_1929777_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	4.0e-06	25.0
WP_040126693.1\|1929773_1930316_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_060250192.1\|1930351_1931887_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.7e-23	30.7

DBSCAN-SWA_3

2067449 : 2077626

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009689156.1\|2067449_2068511_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.7e-86	48.0
WP_069244809.1\|2068522_2069416_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	2.6e-98	58.5
WP_009689154.1\|2069400_2069952_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.5e-51	54.1
WP_069244832.1\|2069944_2070844_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.2e-24	33.2
WP_069244833.1\|2070884_2071754_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_069244834.1\|2071799_2072582_+	ABC transporter permease	NA	NA	NA	NA
WP_081337656.1\|2072593_2073340_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.6e-08	23.6
WP_081337657.1\|2073468_2077626_+	glycosyltransferase	A0A0B4ZZS0	Mycobacterium_phage	1.6e-12	27.2

DBSCAN-SWA_4

2278167 : 2286434

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059516750.1\|2278167_2279556_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	7.3e-76	38.0
WP_059516748.1\|2279563_2280514_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	6.9e-17	27.8
WP_009688959.1\|2280577_2281570_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	2.4e-28	31.2
WP_009688958.1\|2281644_2281974_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_040126902.1\|2282177_2283080_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.8e-51	39.5
WP_081056803.1\|2283169_2284519_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009688954.1\|2284564_2285488_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	6.7e-41	34.0
WP_059516746.1\|2285525_2286434_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.2e-21	28.1

DBSCAN-SWA_5

2890992 : 2900609

Burkholderia_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069245013.1\|2890992_2891685_-	LexA family transcriptional regulator	A0A1I9KG86	Aeromonas_phage	6.5e-33	39.6
WP_069245014.1\|2891754_2891961_+	hypothetical protein	NA	NA	NA	NA
WP_069245015.1\|2891957_2892194_+	hypothetical protein	NA	NA	NA	NA
WP_069245016.1\|2892190_2892406_+	hypothetical protein	NA	NA	NA	NA
WP_069245017.1\|2892445_2893294_+	conserved phage C-terminal domain-containing protein	V5URT9	Shigella_phage	4.0e-48	60.9
WP_081337669.1\|2893290_2893791_+	histidine ammonia-lyase	NA	NA	NA	NA
WP_069245018.1\|2893778_2894741_+	AAA family ATPase	I6S1U6	Salmonella_phage	1.4e-57	39.7
WP_155774342.1\|2894784_2895231_+	hypothetical protein	I6WLM5	Burkholderia_virus	1.1e-33	51.9
WP_069245019.1\|2895224_2895410_+	hypothetical protein	NA	NA	NA	NA
WP_069245020.1\|2895406_2895898_+	hypothetical protein	NA	NA	NA	NA
WP_069245021.1\|2895894_2896365_+	hypothetical protein	Q6JIG5	Burkholderia_virus	8.3e-64	80.0
WP_069245022.1\|2896361_2896643_+	hypothetical protein	E5FFF4	Burkholderia_phage	8.0e-14	51.2
WP_069245023.1\|2896639_2896975_+	hypothetical protein	NA	NA	NA	NA
WP_069245024.1\|2897052_2897451_+	hypothetical protein	NA	NA	NA	NA
WP_069245025.1\|2897462_2897840_+	hypothetical protein	NA	NA	NA	NA
WP_069245026.1\|2897972_2898218_+	hypothetical protein	NA	NA	NA	NA
WP_155774343.1\|2898348_2898711_+	hypothetical protein	NA	NA	NA	NA
WP_069245028.1\|2898906_2899266_+	hypothetical protein	C7U0W1	Enterobacteria_phage	1.4e-23	41.4
WP_081337700.1\|2899325_2900609_+	DNA-packaging protein	S5VY04	Leptospira_phage	1.8e-31	37.0

DBSCAN-SWA_6

2913736 : 2917860

Burkholderia_virus(66.67%)

integrase,holin

attL 2910630:2910646|attR 2924616:2924632

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2910630:2910646	attL	NA	NA	NA	NA
WP_155774348.1\|2913736_2915215_+	hypothetical protein	Q9G0D8	Ralstonia_phage	6.9e-24	57.1
WP_069245043.1\|2915264_2915600_+\|holin	holin	Q6J1Q7	Burkholderia_virus	4.2e-38	77.5
WP_069245487.1\|2915599_2915881_+\|holin	holin	Q6J1Q6	Burkholderia_virus	8.5e-24	59.8
WP_069245044.1\|2915867_2916362_+	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	2.4e-77	87.8
WP_069245045.1\|2916358_2916868_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	1.1e-24	45.0
WP_069245046.1\|2916828_2917860_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P9F9	Acinetobacter_phage	2.4e-55	38.8
2924616:2924632	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013377

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013378

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection