CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013393	Burkholderia vietnamiensis strain FL-2-3-30-S1-D0 chromosome 1, complete sequence	0 crisprs	cas3,DEDDh,csa3,DinG,WYL	0	4
NZ_CP013395	Burkholderia vietnamiensis strain FL-2-3-30-S1-D0 chromosome 3, complete sequence	0 crisprs	WYL	0	0
NZ_CP013394	Burkholderia vietnamiensis strain FL-2-3-30-S1-D0 chromosome 2, complete sequence	1 crisprs	DEDDh,cas3,csa3,DinG	1	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

381409 : 410660

Pseudomonas_phage(25.0%)

transposase,protease,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014722317.1\|381409_381916_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.1e-21	52.0
WP_069222623.1\|382166_383009_+	hypothetical protein	NA	NA	NA	NA
WP_069221862.1\|383163_383412_+	hypothetical protein	NA	NA	NA	NA
WP_069221863.1\|383408_383804_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_021164205.1\|383853_384651_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.9e-32	36.1
WP_059719456.1\|386325_387450_+	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_014722334.1\|387906_388707_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_069221865.1\|389021_392204_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.4e-59	29.2
WP_080484188.1\|396444_397713_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.5e-40	43.9
WP_140995563.1\|398209_398602_+	hypothetical protein	NA	NA	NA	NA
WP_081336065.1\|398611_399103_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_081336066.1\|399166_399340_+	hypothetical protein	NA	NA	NA	NA
WP_155769755.1\|399336_399573_+	hypothetical protein	NA	NA	NA	NA
WP_059702034.1\|400225_400543_+	hypothetical protein	NA	NA	NA	NA
WP_011883100.1\|400635_401418_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011883101.1\|401414_402761_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011883102.1\|402863_403475_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_059548943.1\|403849_404485_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045578566.1\|404539_405055_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011883105.1\|405070_406561_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011883106.1\|406631_407135_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011883107.1\|407197_407683_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059548941.1\|407760_409596_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011883109.1\|409559_410660_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

700179 : 709293

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883357.1\|700179_702132_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	7.0e-149	50.1
WP_011883359.1\|702388_703525_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.2e-22	27.2
WP_069221927.1\|703529_705494_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	3.8e-54	36.0
WP_014722488.1\|705611_706427_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.7e-35	32.5
WP_014722489.1\|706474_707161_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	3.6e-07	29.5
WP_011883368.1\|707157_707700_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_059702757.1\|707733_709293_-	polynucleotide adenylyltransferase PcnB	A0A1B0V011	Roseobacter_phage	1.7e-17	27.6

DBSCAN-SWA_3

976070 : 984508

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883830.1\|976070_977471_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.5e-76	37.9
WP_155623574.1\|977478_978429_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.2e-16	28.5
WP_011883833.1\|978492_979485_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	5.9e-27	30.9
WP_069221998.1\|979558_979909_+	competence protein ComE	NA	NA	NA	NA
WP_059455975.1\|980112_981015_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	6.3e-52	39.5
WP_059459106.1\|981096_982320_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_059550919.1\|982490_983414_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	1.0e-41	35.2
WP_155769761.1\|983536_984508_-	alpha/beta fold hydrolase	A7XCB7	Tanapox_virus	5.6e-22	28.1

DBSCAN-SWA_4

1268346 : 1302902

Ralstonia_phage(20.59%)

plate,head,tail,integrase,transposase

attL 1260304:1260320|attR 1310907:1310923

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1260304:1260320	attL	NA	NA	NA	NA
WP_069222090.1\|1268346_1269141_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	1.3e-104	66.3
WP_069222091.1\|1269278_1269716_-	hypothetical protein	A0A1L7N100	Ralstonia_phage	3.2e-25	43.5
WP_034193255.1\|1269720_1270299_-	hypothetical protein	NA	NA	NA	NA
WP_069222092.1\|1270301_1271822_-	hypothetical protein	A0A291LA09	Bordetella_phage	7.2e-16	37.6
WP_069222093.1\|1271824_1272394_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	7.3e-30	38.6
WP_069222094.1\|1272390_1273458_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	1.1e-63	42.5
WP_034193258.1\|1273457_1273808_-	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	2.7e-35	68.1
WP_034193259.1\|1273870_1274488_-\|plate	phage baseplate assembly protein	A0A0M3LPA3	Mannheimia_phage	2.4e-34	42.3
WP_034193260.1\|1274471_1275611_-\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.7e-78	42.0
WP_155769766.1\|1275594_1277079_-	multidrug DMT transporter permease	A0A2H4JGT4	uncultured_Caudovirales_phage	3.8e-38	26.8
WP_081336088.1\|1277014_1279504_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	1.5e-50	30.7
WP_034193262.1\|1279656_1280031_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_034193263.1\|1280027_1280402_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	4.5e-28	52.5
WP_034193264.1\|1280420_1281851_-\|tail	tail sheath protein	B7SDP8	Haemophilus_phage	1.2e-92	45.2
WP_034193265.1\|1281867_1282101_-	hypothetical protein	A0A0M3LQM9	Mannheimia_phage	1.9e-05	55.6
WP_034193333.1\|1282097_1282814_-	DUF1834 family protein	NA	NA	NA	NA
WP_034193266.1\|1282825_1283251_-	DUF1320 domain-containing protein	A0A1X9SGZ3	Bradyrhizobium_phage	1.9e-14	37.2
WP_034193267.1\|1283254_1283659_-	hypothetical protein	NA	NA	NA	NA
WP_034193268.1\|1283779_1284697_-\|head	head protein	A0A2H4J778	uncultured_Caudovirales_phage	4.1e-115	66.9
WP_034193269.1\|1284712_1285117_-	hypothetical protein	A0A2H4IZH5	uncultured_Caudovirales_phage	3.2e-32	58.1
WP_034193270.1\|1285116_1286226_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	3.8e-67	44.5
WP_034193271.1\|1286568_1286922_-	hypothetical protein	NA	NA	NA	NA
WP_034193272.1\|1286954_1287530_-	hypothetical protein	L7P7T2	Pseudomonas_phage	1.3e-07	33.3
WP_034193273.1\|1287633_1288947_-\|head	head morphogenesis protein	Q6QIB9	Burkholderia_phage	2.0e-59	46.9
WP_034193274.1\|1288933_1290550_-	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	6.4e-148	51.7
WP_069222097.1\|1290563_1291187_-	hypothetical protein	A0A2D1GNP7	Pseudomonas_phage	3.5e-70	62.0
WP_034193278.1\|1291390_1291678_-	hypothetical protein	NA	NA	NA	NA
WP_034193279.1\|1291661_1291901_-	conjugal transfer protein TraR	A0A0M4UVB2	Ralstonia_phage	9.8e-13	60.0
WP_034193280.1\|1291903_1292512_-	hypothetical protein	Q6QIC6	Burkholderia_phage	1.0e-18	40.5
WP_034193281.1\|1292501_1292738_-	hypothetical protein	A0A0M4UKB4	Ralstonia_phage	7.2e-08	55.1
WP_034193282.1\|1292724_1293249_-	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	7.9e-39	51.2
WP_034193283.1\|1293422_1293857_-	hypothetical protein	A0A0M3LRS6	Mannheimia_phage	3.7e-10	31.0
WP_051974414.1\|1293853_1294270_-	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	3.6e-26	45.3
WP_034193285.1\|1294336_1294795_-	hypothetical protein	NA	NA	NA	NA
WP_034193286.1\|1294804_1295422_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.2e-62	55.6
WP_069222099.1\|1295414_1296038_-	hypothetical protein	B5TA84	Burkholderia_phage	5.7e-28	45.1
WP_034193287.1\|1296037_1296652_-	hypothetical protein	NA	NA	NA	NA
WP_034193288.1\|1296711_1297020_-	hypothetical protein	NA	NA	NA	NA
WP_131929052.1\|1297016_1297319_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_034193290.1\|1297332_1297959_-	helix-turn-helix domain-containing protein	A0A0M3VI82	Ralstonia_phage	1.4e-18	50.0
WP_131929046.1\|1297951_1298182_-	hypothetical protein	NA	NA	NA	NA
WP_034193292.1\|1298192_1298936_-	ATP-binding protein	L7P7S2	Pseudomonas_phage	7.9e-85	68.5
WP_051974416.1\|1298954_1301069_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A076FSV9	Pseudomonas_phage	1.1e-187	50.9
WP_034193293.1\|1301134_1301617_-	hypothetical protein	NA	NA	NA	NA
WP_072465388.1\|1301678_1301996_-	transcriptional regulator	A0A2P9JZG5	Alteromonadaceae_phage	5.8e-13	41.2
WP_034193294.1\|1302158_1302902_+	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	4.0e-28	36.8
1310907:1310923	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013394_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013394_1

1745535-1745672

Orphan

Consensus_repeat	Method
TCGATGACGGATTCGATG	CRT

3 spacers

The CRISPR arrays of NZ_CP013394_1

>merge|NZ_CP013394|1|1745535-1745672|CRT
TCGATGACGGATTCGATGACGGATTCGATGACGGATTCGATGACGGATTCGATGACGGATTCGATGACGGATTCGATGGCGGTTTCGATGACGGATTCGATGGCGGATTCGATGGCGGATTCGATGGCGGATTCGTTC

>NZ_CP013394|1|1|1745535-1745672|CRT
TCGATGACGGATTCGATG	ACGGATTCGATGACGGAT
TCGATGACGGATTCGATG	ACGGATTCGATGACGGATTCGATGGCGGTT
TCGATGACGGATTCGATG	GCGGATTCGATGGCGGAT
TCGATGGCGGATTCGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013394.1\|WP_069223557.1\|1729668_1743225_+\|LWXIA-domain-containing-protein	unknown	unknown	gnl\|CDD\|333742
NZ_CP013394.1\|WP_069223278.1\|1728624_1729419_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP013394.1\|WP_059456034.1\|1750381_1751122_-\|YscK-family-type-III-secretion-system-sorting-platform-protein	unknown	unknown	gnl\|CDD\|284089
NZ_CP013394.1\|WP_059458161.1\|1746744_1747554_-\|EscT/YscT/HrcT-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|130468
NZ_CP013394.1\|WP_011882593.1\|1722850_1723312_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP013394.1\|WP_069223282.1\|1751118_1752012_-\|EscJ/YscJ/HrcJ-family-type-III-secretion-inner-membrane-ring-protein	unknown	unknown	gnl\|CDD\|274190
NZ_CP013394.1\|WP_059458160.1\|1743336_1745304_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|132152
NZ_CP013394.1\|WP_059577219.1\|1723314_1725525_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP013394.1\|WP_069223277.1\|1726777_1727950_+\|YscQ/HrcQ-family-type-III-secretion-apparatus-protein	unknown	unknown	gnl\|CDD\|274196
NZ_CP013394.1\|WP_046423887.1\|1752064_1752550_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP013394.1\|WP_069223558.1\|1753023_1754448_-\|EscD/YscD/HrpQ-family-type-III-secretion-system-inner-membrane-ring-protein	unknown	unknown	gnl\|CDD\|274166
NZ_CP013394.1\|WP_011882609.1\|1752674_1752884_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013394.1\|WP_059458163.1\|1748394_1749786_-\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|224079
NZ_CP013394.1\|WP_059456044.1\|1721744_1722671_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP013394.1\|WP_059456041.1\|1727953_1728628_+\|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|237210
NZ_CP013394.1\|WP_069223279.1\|1745690_1746719_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	unknown	unknown	gnl\|CDD\|376521
NZ_CP013394.1\|WP_045577818.1\|1725886_1726285_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
NZ_CP013394.1\|WP_069223280.1\|1747547_1748402_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP013394.1\|WP_069223281.1\|1749782_1750400_-\|HrpE/YscL-family-type-III-secretion-apparatus-protein	unknown	unknown	gnl\|CDD\|180763
NZ_CP013394.1\|WP_081057859.1\|1719954_1720209_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013394.1\|WP_069223557.1\|1729668_1743225_+\|LWXIA-domain-containing-protein	gnl\|CDD\|333742	NF012230, LWXIA_domain, LWXIA domain-containing protein. This domain occurs exclusively at the C-terminus of a set of long proteins (average length 4000 residues), and is separated form the rest of the protein sequence by a Pro and Ser-rich spacer region of poorly conserved, low-complexity sequence. This domain is named for its most conserved motif, LWxIA. Some but not all sequences in the seed alignment score well locally to the LysM domain model of PF01476, which may have a general peptidoglycan binding function.	1.59506e-31
NZ_CP013394.1\|WP_069223278.1\|1728624_1729419_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	3.89567e-81
NZ_CP013394.1\|WP_059456034.1\|1750381_1751122_-\|YscK-family-type-III-secretion-system-sorting-platform-protein	gnl\|CDD\|284089	pfam06578, YscK, YOP proteins translocation protein K (YscK). This family consists of several YscK proteins. The function of this protein is unknown but it belongs to an operon involved in the secretion of Yop proteins across bacterial membranes.	9.52288e-05
NZ_CP013394.1\|WP_059458161.1\|1746744_1747554_-\|EscT/YscT/HrcT-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|130468	TIGR01401, Secretion_system_apparatus_protein_SsaT, type III secretion protein SpaR/YscT/HrcT. This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.76437e-48
NZ_CP013394.1\|WP_011882593.1\|1722850_1723312_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	2.40848e-80
NZ_CP013394.1\|WP_069223282.1\|1751118_1752012_-\|EscJ/YscJ/HrcJ-family-type-III-secretion-inner-membrane-ring-protein	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	7.14716e-86
NZ_CP013394.1\|WP_059458160.1\|1743336_1745304_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|132152	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.	3.56073e-174
NZ_CP013394.1\|WP_059577219.1\|1723314_1725525_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	2.64267e-147
NZ_CP013394.1\|WP_069223277.1\|1726777_1727950_+\|YscQ/HrcQ-family-type-III-secretion-apparatus-protein	gnl\|CDD\|274196	TIGR02551, translocation_protein_Q, type III secretion system apparatus protein YscQ/HrcQ. Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.31956e-18
NZ_CP013394.1\|WP_046423887.1\|1752064_1752550_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00357823
NZ_CP013394.1\|WP_069223558.1\|1753023_1754448_-\|EscD/YscD/HrpQ-family-type-III-secretion-system-inner-membrane-ring-protein	gnl\|CDD\|274166	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.82349e-75
NZ_CP013394.1\|WP_059458163.1\|1748394_1749786_-\|FliI/YscN-family-ATPase	gnl\|CDD\|224079	COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP013394.1\|WP_059456044.1\|1721744_1722671_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	1.48165e-57
NZ_CP013394.1\|WP_059456041.1\|1727953_1728628_+\|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|237210	PRK12797, PRK12797, type III secretion system protein YscR; Provisional.	1.78635e-103
NZ_CP013394.1\|WP_069223279.1\|1745690_1746719_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	gnl\|CDD\|376521	pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.	2.12399e-103
NZ_CP013394.1\|WP_045577818.1\|1725886_1726285_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	1.26489e-25
NZ_CP013394.1\|WP_069223280.1\|1747547_1748402_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000143487
NZ_CP013394.1\|WP_069223281.1\|1749782_1750400_-\|HrpE/YscL-family-type-III-secretion-apparatus-protein	gnl\|CDD\|180763	PRK06937, PRK06937, HrpE/YscL family type III secretion apparatus protein.	9.02107e-31

>NZ_CP013394.1|WP_059458160.1|1743336_1745304_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGIDGFLNSVAFDEETARGTLARMTASLAHRGPDGQGMWVDPEAGIALGHRRLAIVDLSVQGRQPMASACGRYVLVFNGEIYNHRELRAELERTGRAPAWRGRSDSEVLVAAIAAWGVDATLRRATGMFAFALWNRASRVLTLARDRIGEKPLYYGRIGDALVFASELKALRGYPGFDGAVDRDALCLYLRQSSVPAPHTIYRGISKLPPGTFIQFEHARDTPRVRAYWTLEQAIEAGRERPFDGNADDAVGQLDAVLRQAVARQMEADVPLGAFLSGGIDSSAIVALMQAQSAKPVDTFTIGFHEAGYDEAGYAKAVARHLGTRHTELYVTADHALAVVPKLPSIYDEPFSDASQIPTFLVSELTRRHVKVSLSGDGGDELFGGYTRYFLTPRLWRKLHRVPAAVRARIAAALHALRPDHADQLAAVAQGAWGGVDARDGASRIGDRLHKLGHVMTAESRIGLYRLLMSAVHHPERLALAGQEPPTPLDTVSAWPAHLSFAEQAMAIDTLTYLPTDILAKVDRAAMAVGLETRMPFLDHHVVEFAWRLPAAVRLPQGQPKALLRRLLDQYVPRALIDRPKQGFCAPVDHWLRGALRDWAEALLEPSRLRAEGFFDAAAVERLWRQHLTGRMNWQHQLWTVLMFQAWLEGQRAA
>NZ_CP013394.1|WP_069223557.1|1729668_1743225_+|LWXIA-domain-containing-protein
MLSIDGLGLGVNWQRFLSETLNPVVAPPPPPPKQDDPAAGPANPTVTPPIPVTASLATDPAKPTNAEIQSATALIQSMAAQYTAPPPDITVENDKTTAVQKAIQGAQTKYDNASQALQGAQNVLHLANRDPESTPAERKSAQADYAKARAAADDAQRELNVTTDAGYMILYGEQANADMPAGMKLDDSGKVTDPGDAQHAADQQLKTLIAAFPDHPDDPNWAPQASDCKNPLQIRLYDDWQNASAKAAVGASKYYADVANSNLAYTQFQSYLADPDYKAALDAGVGRLNDALQPLELQVTLPDAPASQDAAQQAVTAAAKDATYANAAYGAASDSLTLTNAQERYDAAKGKLGPTVIVPNAVSDAKAALARAQTAANTSGGYLQMLSAQNQVDTLQANYADKQRASTAWHKANPHAMIKDPQVDLDLGDAYAKLDQAKQQASIAHDGFVVAYGATLAQQYDDQASHLDAQVKAQSVFTKPTLQTPLLSPSLSTANSVPNLPASSLSTAASAAPNSAPGLPSALPLAAPTLPGSTGAPSLPTSPLLDSPFLLPQSAGPSAARTGPTMLDVKRMQITAGAIRAADARLSDSVNERATQVALSQARIHQTEVKSTLESVQKKYDDWAAANPPPVRFRYVAGDDMIPAPSAPRPNLYQSQLDKAKADVTQADNAVQRLQLLSETSHQQVLMDQFDAGLDERLRYADPNSDAYKDYQSAQHDFYEAHRSELSNTLLDAAGASTNNGATIAFGKLTDNEQRNLIGVALGMQPDVQSGASAGDGSDPVTPMKDDVARFTNKDKLSTINSVRDQLLKVGGGATTQVSVLPMVYAAKDAGMTTSALFKVSGKDGTQYVDETASTYDDINDYIDNNELSKDGTVDIATGHNADGTLQLVSKAAHHESGFDSFMNTLTSTGLNIGMMVGGMALEGLGTLLDGTVVGAVVGVPLNLLGAGMMYTAIGATVTSAGLDLANRADHGRSINPFTDAGARMDFINLVPMGAAGAAKLAGTKLFTRTVTALTRTPKVASVLAGGTKATAVVTGLGAGFEAFGEAGYDYFVTGDKKAAGEELKSGLTNVALMAAGGLKERVVTSVRTGTGRPIPIRGADGKTVSVDSQTIGRILNKGDAASLAAGRTRVTLDGEAVTVSPDGTLRVGDKILTYEDQPIRVLDRTSRNALPAGKFVVLGEDGKLSVVSASDKSWTNGTRIDSVTDTGERLSFGDGGGMSTTPKVVAKTPLELLDRTLQQARDEYAAARDEQAPRSLAQAAEQGETASAANDARSTRRTSQERARVDAQRDEAAAEHATDANLDRRSADAQALRYRPLDADASPGTGARTTPAAARPRIDVRVVDLTGAKPAARAATADPAGIAVPRGPSAEPLEVGGRTLYIVRDGDAPHSASPAAARTPKLDEPIVVIAGEHDAQLAPELANRWDKPVYAATPEALDADGQLRADARTLRFDPAPDGVALAGDAEAAPHASPARAPGDAPVIVLAGKRGPNEPALPRPAATPRPLKALDGRFSAPNRVLVLVKPERSAAPERAPAHGETAPPRERAGGGAARPVSHHDVAHAYDADLVAAHPEITEAAPPEAAASGPGWFTRMQMRFGGAPVPDTVLALASQSATLVTQLRMLNDGGWRVKVGKRGGGSHIDVRKRVMTIDGALQEPGSITYTLASEARQAVEAMAGALDLDYGSRSRFTRKALEAEARAQINAFEARYEIALSTGVDIAEHAQLPDAIAREGVDWHGPTSDYTGTVARLAENFADAPVAARDAQTYREFYDDVWARQKRRGGVPRRMPAPRMQPADGQDGSTPAGRQQLDARTAWSYAHAVLESPFGERPAPDAATLQARRDGYMSTFADGDVLVLHADTLPDGTLLVDGKPVSAHEYALAMAPWPTLRQADTIVLSAGQRGYEAAARLANVWQRAVYAPPEHAVGADATVHDTRMFHRFDPAPAAPHALGELAADADGVHLAGDRASRIDIDGNVGELLGAGARKTAFALGDDAALATVDRSPKPPGAPQEPLTPEAQRAADEQLVRDEQRALAQLEQWRIRTVRLDGPFRALGDRVSALSLPLGVFHSDEFASGRLPPAVARAAIQNVLKTREVLEQHEVGFDLQGIFTRSGDFLVCDPGPILNTYAAHTLSLSRLFEIEKGIHRWIEQHGVDALDSALDPARDATRDATPLADDAFVQKPSVITRVRMRVGGAPLPAEVSALAQRSGTLAAQLRMLDANGWRVRVGKRGGGSRIDTKHRRVTIDGAAAGPGWMTYVLAHETQHAVDAIEGTLGLDYSGRGRFTRTALEAEARAQLNAFEARYEIRMASGIDIAANVRLPDALQAEADAWPAARGDAGALARLADAFAQAPVSGARGKTYTAFYGDAYDRGPGRRARAMPAPETRAARDGDGERDAPTTMREIQAQRAAWSQAHAERDASPFGASGAPPVDTLALLRDGRVLLDMGQRIAIVPADTLRDGTLLGPDGQPVGPHEFTLLNAPPSDYGYTTILAARHANEGGAAQLANLWQRAIYTVHPDAIGADGMPTDLSAMNRYVPASYRQPSLGELSVDSAHGTLHLDGAPGRPVDPADYLGPVLGSGAYKTVFDGGAGQALGVYRDGSIDGLADAYEAVELEQGGLKTLSEVYELPTSTTDGPFSVVNRVGVVLKPSAQLSSVDVEFDIGLPAVVSSRGLTDLARIRRVTQDHHLLYDFQVLFGRNGDVMLHDPGEVLPHGDPHGTVLARIDEVAAKIHSGLRHGRIKLAHPAFDEAGAYAPRRGAIAHVVMTFRGIVLRMQAHALARRSPTLRAQLRLARADGWKVKLGAPGGGQYVDAARRRIVLDGNTRRAGTLVFALAHEAQHSVDLATDTLGLDRSGHDAYVKSLLLAEARAQLNAYRVRAEILAAGGPDVAAHVQLPPTLARAAEHAFASGEPAALDALADAFGEIRTSLPGTPTYRALYGEQARAELAGEPAPLTLAAPATGRGGGRRGGARSGRNALDSAEMTRARAWLDARGMRTLKRVDGAEAASLRALVRQTGTDTVLLITRAGKITPAAVPEVVATARIDANGAIAQPKFVGGKLAPDEQQSLAAALDPAHDAADPAQAAAARAGFAFHASPVSLKQLQALGGMAKIEYAGDGKVVEFTRRGRVSSRYVDAIGALADAKHYRSAHKALGAAGRTDTIYAIDRTTGELRGHATYDAASGSWNYHEKAPLAQTRIGERPLRDAYPRRAQVRVRPHGKPHGVPLTRARRHGVSFVVSSIDPAMLEQVGNRFDAPKPPKADKPDRLPRPGLRYLGQLGITKTLNAPRRVALLTRNRTAALLGRARTGAALPAAGAAAANVPLFDRNLLPSGKHAALDFSGHNAVHLLSAAEFGALDAGKHHIYVYDTSDPLTHRLDTPQGVLVPDAKGKLTWHDWQNPGAPGVPLESSPIGAGPYGADTHLLLTELTPAELADHARGTRLAALNRRVEYLDGIAKDTSPSTFASLRNWASDAARETRSARKALKKEIKAATKAAKRQGLPEPAYPELKLRPYQPSLVSTTLVEWKRLYGDGNVPDLFAHLERIDALAKHERDSRLPPLELTDATATTPPPATMADAAAWRGTGLPLYVARDWSGGGARYAPVPFSRRAQRGLSTAAATDRALRRAVLGAGDAVRNRLVPMSRAYRLSDDPAEFVAQTRRHGGVMPVVTIPIDPHTLNATRGAKHDPEFVGDVKSIGDQRKAKIDYWEGTITGENGKVMHLDDLTRENLHRWLDAASEAGFLLRLEMAPARALVSAADYRHLAGTNDGYHHHARLGALLESWAAEHEGEPAPHVMVTFHGWDAVPEPVPGAGHLELLDSLLDRPTLEWVHVGLSYATHGADFIANQELTTALAKRLVERAVDEYAQPDGLDAPRSKLARLHGTDALTRVFERVDRDTLADQHQMLLAEIERIGRDKGLTPAQIAELRQRLYEGNTTRLLHRARYATAKFATDAWHADPSRAPSEKSRERKFNEAWLKDVGARLRAPQQDTTRVDGSTVAAGLEPWREVVRRPALMVDASLPVSESRLISAQAADYVKPGDPLAAFAELNALRLQQMERSWSVLSWKNVLSGLVGIGAGIAVHHIGLTPTDYKQAANATFVGVRTGRLVQALHQDTLRALQSGDPRLFNHVIDRFINGLNNQLSAHRMDEAQRRASLVRLAGEGRAKINLQLELHGRNALSADKTVEYTKLLANDMIQQMQGVLAGTSIQQLHHGNPRRFLGKVGRTAAIAGYASLGEMSLHTLLQDPSLVPLLGTTGAVLGLTYTGLVQASAFTHLSIERRSRFVRFIDTASDLASIAGGYIAPFVGAAATIHTNLPTAIASLSSATLLALARADTHFPNLTKRVTGKMPTILLLAPIGIYVGNWVYTAVSGGSSSGNNGNNNTQPSNGTTHHGSAPSAPSAPGLPSAPAVPPLPPSGTHAHVAPAAPPTTPTTPQTPAAAQPYIVVAGDSLWVIADRHRQSLLDAAHVSRADQQGLTRDQQDARALTEILQLNPSVAGDPNQLSVGAPLNLG
>NZ_CP013394.1|WP_069223278.1|1728624_1729419_+|lytic-transglycosylase-domain-containing-protein
MNARALRCVAAGLYALAALMLACSGLSVRDARAAGSAAAFTQLARACAPNVDPDTLAALVRTESGFNPYAISVVGGHLTRQPASLDEARATASELAARGFSYSVGLAQVNERNFAKYGLDDATMFEPCRNLRAGGAILTECFARSSNTGRSPQAALRAALSCYYSGNFTTGFSSGYVSRVVASARRNAREGGVEPIPVVRDVPPPARQRRMDAVATTPPERARRLPSAAAAADAPSCHARPVVMMCRGLPASQAKRLCVRCLDQ
>NZ_CP013394.1|WP_059456041.1|1727953_1728628_+|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein
MGNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDAAGQFSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSYRVAGAG
>NZ_CP013394.1|WP_069223277.1|1726777_1727950_+|YscQ/HrcQ-family-type-III-secretion-apparatus-protein
MPALPLTNADTGDAANRAPAAAPAAAQTGAAVPPAPVAVPLDASPYLPRLSAAAARGLSHAYGAPAAVPVTLGEHAYEVRWRVAAEPAADAHAYRFVVGPATGTLWLDPLAETEWLGDAADPAVPAVIRAALLADLAAPLAAVLQAATRQRVELLPPPASVPAWRTAPAALRFELRRADGAWRCHGALLFDAPDALAVFFAQPAPARPAPHAAYASLPVPLVFEIGRTELTTAELADVVGGDIIAIERWRAHEQNLLCVGRVPATPAWEITGRPSGTRLTVERIREMPLEPTRTDTPPATAQDAPPDDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVVTLTQPAPRER
>NZ_CP013394.1|WP_045577818.1|1725886_1726285_+|winged-helix-turn-helix-transcriptional-regulator
MDCKYLYIDNIKINFVRRTIEIDDKVVDVTPREFDVVEFLLDNMNKIVPRQAIQEAVWGRELGVSSRTLDTHISRIRSKLQLDHDKNLRIIPIYAVGYRLVLFGAAMTHVERHDAAPILRAAPQPVLTADYA
>NZ_CP013394.1|WP_059577219.1|1723314_1725525_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTIELDNAGSVRASRRTFLKTAGAAAAVSLTIGFEWAGLGRRALAATPPAADFAPNAFLRITPDGAVTVIAKHVEMGQGAYTGIATIVAEELDADWSSVRVESAPADAKRYANLAFGTIQGTGGSSAMANSWQQLREAGGKARAMLVSAAAARWQVPAGELSTAGSVVTHAKSGRTAAYGSLVADAAKLPVPDHVTLKQPADFKLIGHRIPRVDASAKSNGTAQFTLDTTFPGMRVALLQRPPRFGATVKSFDATAAKAVPGVVAVVQVPNGVAVVATGFWAAKQGRDALKIDWDETHAEKRGSDEIMREYRQLAAKPGVSARKDGDADAAIAGAARKLSATYEFPYLAHAPMEPLDAVVKLTADGCEIWAGDQFQTIDQGNAAKVAGLEPEQVRIHTLYAGGSFGRRANAWSDYVVEAVSIAKALGADGTPVKLQWTREDDIQGGFYRPMYFHKLDAGLTADGRLVGWRHRIVGQSILAGTPFAAFMVKNGIDATSVEGAANLPYAVPNVSVELTTTKIGLPVLWWRVVGSSHTAYAVEAFIDEAAHAAGKDPYLFRRDLLAKEPRMRAVLELAAQKAGWDPAQPLPKGRGRGIAVAEAFKSYVAQVAEVSVDADGNVKVERIVCAVDCGIAINPDIVAAQMEGGIGFGLGAALHSAITLKDGRVEQRNFDGYHVLRMAEMPKVEVHIVPSAQAPTGVGEPGVAPVGPAVANAIFAATGKRHYVLPFDSAGGAKA
>NZ_CP013394.1|WP_011882593.1|1722850_1723312_+|(2Fe-2S)-binding-protein
MPTTFVLNGKSVTLDADPSMPVLWAIREHAGLTGTKFGCGMAQCGACTIHLEGQAVRSCVLPLAGIAGKQVTTIEGLQSKPAQAVQAAWVKLQVPQCGYCQSGQIMSATALLEQNPKPTDADIDAAMNGNLCRCATYARIRAAIHDAAATLGA
>NZ_CP013394.1|WP_059456044.1|1721744_1722671_-|AraC-family-transcriptional-regulator
MDMTDIAASRESGRRELASLIGRFAPADGSHATAVPALMLHRHTRAVDLGCGVSRAALVIAAQGAKRVVVAGQAYEYDAQHCLITSIDLPILSRVTQASPDVPYLCLSLTLDLQRIVELAAEMRLPEPEAGPEGEGIAVAELTPPLLDAALRLLRLLDTPADIPVIAPLIEKELLYRLMTSGQGARLRHMAVAGSHTHRIARAIEWIRDHYAEPMRVETLAQAVNMSVSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLRQGGDVGSVAATVGYESASQFSREYSRLFGAPPMRDVGHLRSKELLGT
>NZ_CP013394.1|WP_081057859.1|1719954_1720209_-|hypothetical-protein
MLSRCRNYAAIFSGRAFAFGKSGRAVSLAGNGEPHAGARRRPISNDARRTIRNDAFVSRVRDSVYSGGFTGAQAGIQNNKSQGQ
>NZ_CP013394.1|WP_069223279.1|1745690_1746719_-|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein
MAEKNQQPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGVGTLFARLQALFRLVFDAAGAADPAARLAVLVDGAARDWALLSAQIVAAGLLAGLLAGFVQVGGVMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLVATLGWLIVESLDPSVQSGFTRPVSILALIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDPHIAAKRRQLAREAQFAALPDRIGYASVVVYSPRVAVALYYGGIGSLPWVLARGEGEAAERIVRLARDALRPTLANVGLAHALYETTPENGTIQQQHFREVAQLLKWATGA
>NZ_CP013394.1|WP_059458161.1|1746744_1747554_-|EscT/YscT/HrcT-family-type-III-secretion-system-export-apparatus-protein
MLDQAANFNDIAGTLRPLLYVMPRLLPIMLIVPVFNEQIITGLVRNGIAVVIAAFVAPAIDPAQVASLPFLMWCLLVAKEAVVGLLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVALALFVTAGGLQVLVQLFAQSYAWWPIGSFGPDLSSMLQTFVVRQTDTIFEWMVKLAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALLSPDSGLMALLRALFAAHGGA
>NZ_CP013394.1|WP_069223280.1|1747547_1748402_-|hypothetical-protein
MSEADDRIVLATLARLRRVREMRSQIARVAAARQQGIAAQSRRALDAAQAQLAQQVAAKAAIQARLAEDVREARALQNAAADTRTFDRHIGVANASVSEAAHVHRDHEATLADLQRAARKAKAAEDKLDKAGEKALHARAARVEREADEVADAHAVRRFATAGVWVAGGADGHAARKEPEMTAAFDAEMVGGAAEAGGDVGDVGDVGDGADAADADNADNADNADNADNADNADNADNADNADNAGDAADTPDTPDTAAASARPSPHLDDTAPAPAPVPTERRC
>NZ_CP013394.1|WP_059458163.1|1748394_1749786_-|FliI/YscN-family-ATPase
MNAPLDEPRPFGGGSSDDGDGAPFDGGRLVGDLDAGLAFFSPVSVQGRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFAVGDALFGRVLDGLGRPLDDLGPVTGAAWVSTQQDPPNPLARKLIDTPFPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGARGSITALYTVLVEGDEESDPIAEEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQEIELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASHEDVRFDALLAKLTRLANDHV
>NZ_CP013394.1|WP_069223281.1|1749782_1750400_-|HrpE/YscL-family-type-III-secretion-apparatus-protein
MGLAFLITSDNLQLLSERKVLKEREYAALLDASSVIATARDEAARIVADAQREFDRRQAAGYDEGMRRAQREHAAQAYTQALAAARTMESMKDAMADIVVKAVRAIVGEMSTQTLYEAALARIAPLVRDEAFLIVRVAPGRQDEMRDALDRAFAGQSNRQRIRIVEDAQLERHACTVETPSGRIDASLDLQIDALRQAIRRDVPR
>NZ_CP013394.1|WP_059456034.1|1750381_1751122_-|YscK-family-type-III-secretion-system-sorting-platform-protein
MSEVHAASPGAAPDAVPLPWLQPLGAPPAARRAAFHALVCEFNLRPDRYLHVTRVPAAWPARYRSPDAFGPAGRRLLARHLLDAHGVAGRYDFDVANPCARLALLPGAALEQLAAYAGLLLHRGWLRDALNVRRIRAEVAAKLGGDALELALERAPEFGALADTLEPWRADPAALPAVIRARGARLLADFIGVAGDAVGVRARLKFNRACDDEAPYWLNRAQRDQFGELLFLFLIPERLASWDWLF
>NZ_CP013394.1|WP_069223282.1|1751118_1752012_-|EscJ/YscJ/HrcJ-family-type-III-secretion-inner-membrane-ring-protein
MTTIDSTPRMHAWRSRAARALLAGLLALLAGCQKELYSGLSERDANQMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGLPKPSYASLGELFQKQGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLFLQPAAARATRVDGIGSAVSDLLRLRSPLGWLVFALILLTGAVIALSAARRGMFGARVAALVGTPRGVAGGNAAGAGAAQTGSGLRTPDGARDGA
>NZ_CP013394.1|WP_046423887.1|1752064_1752550_-|hypothetical-protein
MSVTGVGAAPPGAAALAGAAQQAGTASDPAQVRQFDALMQPGAAGGSSPSAAGVAMSRAPADAAPAVQMTPATPAQANHASLVERLRTYGNDLDTRYANIDKHRAEMLTSMADNRRDPLMTMVQAMDFQWTATTTISEYQLSLSVAQAANGFTHTVLKTQE
>NZ_CP013394.1|WP_011882609.1|1752674_1752884_-|hypothetical-protein
MGNSTGSVSNTGDVQKQADDLTKTQLELTKINFQVQQSTATFETSNAVTAQEGTANAQVAQHLSSAGRA
>NZ_CP013394.1|WP_069223558.1|1753023_1754448_-|EscD/YscD/HrpQ-family-type-III-secretion-system-inner-membrane-ring-protein
MSTTIIEPHGDGPLPGGAAGGAAGVAGAGGAGGAAAALASPWNLCFLSGPMYGRTMSLARGANWVGTAADCEVILPDREIGAKQVCLQVGALAVTVQNHGGEGAAPVLFNDAPIGAGRRSMTPQDVVTVGSIKLGIARHAQASVAVPDDADAPHAAHDAAWLAWLTGGLRRLGGRRLVIVLAALWTGVLLGALGYGFVAWSGRLPWQHESVLARTHRLQQMLHAYPELAVAPRDDGVIVSGYVADPAARERVAQIVAGVDNAALGNIYVVSDLVATAQTYFSDTPLTVAYLGRGRIELTGAAQRAQIEPRIRNYMKDARPALEVVDHVRDADAGAPRTATTLGGVAGIPEITTVFAGDGDQRYIETVDGSRYFEGARLKEGPTVVSIGPDEVVFERNGQRITMPLGAPPASAPERVPAPPVAPLASGAAAGVAQPVPGPTLLPEAPATPPTTPAVAPAGAAKDAAKEATKEAAH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	129674-129703	4	0.867
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	698489-698518	4	0.867
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2064127-2064156	4	0.867
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	974735-974764	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1337831-1337860	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1337798-1337827	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1336603-1336632	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1336640-1336669	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1336640-1336669	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1130711-1130740	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1336629-1336658	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1244903-1244932	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1336629-1336658	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1337796-1337825	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1336640-1336669	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1336651-1336680	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1336629-1336658	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	902856-902885	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	907202-907231	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1229058-1229087	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	628131-628160	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	907191-907220	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	940259-940288	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	799914-799943	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	940259-940288	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	799937-799966	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	940259-940288	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	940259-940288	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	940259-940288	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	799937-799966	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	836065-836094	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	816756-816785	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	870992-871021	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	907874-907903	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	799937-799966	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	799937-799966	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	799937-799966	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	940261-940290	7	0.767
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NC_015179	Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence	9083-9112	8	0.733
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NC_015187	Acidiphilium multivorum AIU301 plasmid pACMV2, complete sequence	20651-20680	8	0.733
NZ_CP013394_1	1.2\|1745589\|30\|NZ_CP013394\|CRT	1745589-1745618	30	NC_009467	Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence	22821-22850	8	0.733

1. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 4, identity: 0.867

acggattcgatgacggattcgatggcggtt	CRISPR spacer
acgggttcgatgacgggttcgatggccggt	Protospacer
****.***********.********* * *

2. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.867

acggattcgatgacggattcgatggcggtt	CRISPR spacer
accgattcgatgaccgattcgatggctgat	Protospacer
** *********** *********** * *

3. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.867

acggattcgatgacggattcgatggcggtt	CRISPR spacer
accgattcgatgaccgattcgatggctgat	Protospacer
** *********** *********** * *

4. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

5. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

6. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

7. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

8. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

9. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

10. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

11. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

12. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

13. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

14. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

15. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

16. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

17. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

18. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

19. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

20. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

21. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

22. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

23. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

24. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

25. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

26. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

27. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

28. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

29. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

30. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

31. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

32. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

33. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

34. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

35. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

36. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

37. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

38. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

acggattcgatgacggattcgatggcggtt	CRISPR spacer
ccggattcgatgaccggttcgatggtgcgg	Protospacer
 ************* *.********.*

39. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NC_015179 (Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence) position: , mismatch: 8, identity: 0.733

acggattcgatgacggattcgatggcggtt	CRISPR spacer
atgtggccgatgacgggttcgatggcggcg	Protospacer
*.* . .*********.***********.

40. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NC_015187 (Acidiphilium multivorum AIU301 plasmid pACMV2, complete sequence) position: , mismatch: 8, identity: 0.733

acggattcgatgacggattcgatggcggtt	CRISPR spacer
atgtggccgatgacgggttcgatggcggcg	Protospacer
*.* . .*********.***********.

41. spacer 1.2|1745589|30|NZ_CP013394|CRT matches to NC_009467 (Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence) position: , mismatch: 8, identity: 0.733

acggattcgatgacggattcgatggcggtt	CRISPR spacer
atgtggccgatgacgggttcgatggcggcg	Protospacer
*.* . .*********.***********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1491339 : 1517471

uncultured_virus(100.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069223173.1\|1491339_1492356_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069223174.1\|1492418_1494233_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_069223175.1\|1494249_1497813_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_069223176.1\|1497814_1498975_-	hypothetical protein	NA	NA	NA	NA
WP_069223177.1\|1499009_1499219_-	hypothetical protein	NA	NA	NA	NA
WP_081336121.1\|1499399_1500494_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_155769839.1\|1500563_1501181_-	hypothetical protein	NA	NA	NA	NA
WP_069223178.1\|1501213_1503367_-	flagellar hook-length control protein FliK	NA	NA	NA	NA
WP_069223179.1\|1503379_1505926_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_155769840.1\|1506116_1507538_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_069223180.1\|1507594_1508941_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_069223181.1\|1508937_1509600_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069223182.1\|1509612_1510044_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059703735.1\|1510280_1511468_-	porin	NA	NA	NA	NA
WP_155769841.1\|1511625_1512075_+	hypothetical protein	NA	NA	NA	NA
WP_069223183.1\|1512227_1513610_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_069223184.1\|1513636_1514404_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_069223185.1\|1514400_1515135_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_069223186.1\|1515140_1515944_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_081336199.1\|1516202_1517471_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.0e-39	43.9

DBSCAN-SWA_2

1579929 : 1693880

109

Burkholderia_phage(38.1%)

plate,transposase,terminase,portal,head,capsid,integrase,protease,holin,tail

attL 1624738:1624757|attR 1680709:1680728

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059464014.1\|1579929_1581381_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_069223208.1\|1582335_1583334_-	quinone oxidoreductase	NA	NA	NA	NA
WP_069223209.1\|1583459_1584593_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069223210.1\|1584689_1585250_+	N-acetyltransferase	NA	NA	NA	NA
WP_069223211.1\|1585259_1586126_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_059720111.1\|1586249_1587230_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046425365.1\|1587423_1588386_-	agmatinase	NA	NA	NA	NA
WP_069223212.1\|1588733_1589405_+	lysoplasmalogenase	NA	NA	NA	NA
WP_069223213.1\|1589653_1591246_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_069223214.1\|1591267_1592206_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_059454528.1\|1592202_1593108_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_059460214.1\|1593112_1593976_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_059703890.1\|1594151_1595045_+	urea transporter	NA	NA	NA	NA
WP_059703891.1\|1595350_1600192_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_059461394.1\|1600213_1601071_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_069223215.1\|1601407_1602241_-	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_059498268.1\|1602341_1603034_-	hypothetical protein	NA	NA	NA	NA
WP_069223216.1\|1603323_1604805_-	amidase	NA	NA	NA	NA
WP_059560483.1\|1605189_1605648_-	pseudoazurin	NA	NA	NA	NA
WP_069223217.1\|1605705_1607931_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_059703897.1\|1608744_1609179_+	universal stress protein	NA	NA	NA	NA
WP_059454538.1\|1609813_1610062_+	hypothetical protein	NA	NA	NA	NA
WP_069223218.1\|1610578_1611865_+	divalent metal cation transporter	NA	NA	NA	NA
WP_069223219.1\|1611959_1613195_+	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_059454539.1\|1613348_1613750_-	DNA-binding protein	NA	NA	NA	NA
WP_069223220.1\|1613845_1614868_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_069223221.1\|1614881_1616549_-	hydroxylamine reductase	NA	NA	NA	NA
WP_059577491.1\|1616734_1616962_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_043292475.1\|1618818_1619025_-	hypothetical protein	NA	NA	NA	NA
WP_069223222.1\|1619356_1619956_-	alpha-ketoglutarate-dependent dioxygenase AlkB	A0A2K9L4C1	Tupanvirus	1.1e-20	33.7
WP_059498201.1\|1620215_1621364_-	metallophosphoesterase	NA	NA	NA	NA
WP_069223223.1\|1621367_1621568_+	hypothetical protein	NA	NA	NA	NA
WP_069223543.1\|1621905_1622613_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	3.8e-12	38.8
WP_059454546.1\|1622688_1623408_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_059454547.1\|1623481_1623925_+	DUF4902 domain-containing protein	NA	NA	NA	NA
WP_059577423.1\|1624134_1624743_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
1624738:1624757	attL	NA	NA	NA	NA
WP_069223224.1\|1624823_1625570_+	hypothetical protein	NA	NA	NA	NA
WP_069223225.1\|1625790_1626660_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_081336172.1\|1626659_1627007_-	VgrG protein	NA	NA	NA	NA
WP_081336206.1\|1627238_1628291_-	acyltransferase	NA	NA	NA	NA
WP_069223226.1\|1629069_1629972_+	HNH endonuclease	NA	NA	NA	NA
WP_155626228.1\|1630163_1635065_+	hypothetical protein	NA	NA	NA	NA
WP_069223228.1\|1635143_1635626_-	DUF2514 family protein	C7BGD9	Burkholderia_phage	2.3e-37	58.1
WP_069223229.1\|1635622_1636117_-	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	1.1e-74	83.5
WP_059461369.1\|1636119_1636404_-\|holin	holin	C7BGD7	Burkholderia_phage	5.0e-40	92.6
WP_069223230.1\|1636507_1636942_-	hypothetical protein	A0A0A1I628	Burkholderia_phage	3.0e-12	33.8
WP_069223231.1\|1636951_1637977_-	hypothetical protein	R4JJY3	Burkholderia_phage	1.3e-32	49.1
WP_069223232.1\|1637979_1638579_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.4e-52	50.5
WP_069223233.1\|1638569_1639616_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-86	49.0
WP_069223234.1\|1639587_1640016_-	hypothetical protein	B5TK74	Pseudomonas_phage	6.9e-25	48.5
WP_069223235.1\|1640012_1640591_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.0e-32	50.7
WP_081336173.1\|1640587_1641703_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	4.8e-102	55.0
WP_069223236.1\|1641703_1642942_-	hypothetical protein	B5TK71	Pseudomonas_phage	3.6e-82	39.8
WP_069223237.1\|1642949_1644887_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	3.2e-117	53.1
WP_059463077.1\|1645020_1645317_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.6e-20	51.0
WP_059474076.1\|1645307_1645655_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	2.9e-29	52.2
WP_069223238.1\|1645724_1647221_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.7e-150	55.0
WP_069223547.1\|1647217_1647436_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	6.9e-05	59.5
WP_069223239.1\|1647444_1648035_-	hypothetical protein	B5TK65	Pseudomonas_phage	1.8e-36	43.9
WP_069223240.1\|1648042_1648504_-	hypothetical protein	NA	NA	NA	NA
WP_069223548.1\|1648493_1648829_-\|head	phage head closure protein	Q8HAC9	Salmonella_phage	2.2e-18	46.7
WP_069223241.1\|1648828_1649323_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_069223242.1\|1649319_1649589_-	hypothetical protein	NA	NA	NA	NA
WP_081336174.1\|1649656_1650943_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	2.5e-94	44.6
WP_069223243.1\|1651008_1651944_-	S49 family peptidase	F8QZT1	Wolbachia_phage	6.3e-47	43.0
WP_081055117.1\|1651940_1653191_-\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	1.6e-66	38.6
WP_059474086.1\|1653194_1654862_-\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	7.3e-131	44.6
WP_059474087.1\|1654858_1655380_-\|terminase	phage terminase small subunit P27 family	A0A1B0RXI5	Streptococcus_phage	3.2e-16	29.9
WP_081336175.1\|1655447_1655861_-	HNH endonuclease	C7BGG5	Burkholderia_phage	1.6e-34	59.0
WP_069223245.1\|1655998_1656397_-	hypothetical protein	C7BGG3	Burkholderia_phage	1.3e-65	94.7
WP_069223551.1\|1656407_1657448_-	helix-turn-helix domain-containing protein	C7BGG2	Burkholderia_phage	5.2e-159	83.2
WP_069223246.1\|1657492_1658860_-	replicative DNA helicase	C7BGG1	Burkholderia_phage	1.1e-249	98.9
WP_069223247.1\|1658887_1659394_-	hypothetical protein	C7BGG0	Burkholderia_phage	5.4e-85	97.6
WP_069223248.1\|1659483_1659684_+	hypothetical protein	C7BGF9	Burkholderia_phage	4.5e-35	98.5
WP_081336176.1\|1659864_1660104_-	Cro/Cl family transcriptional regulator	C7BGF8	Burkholderia_phage	2.1e-39	98.7
WP_081336177.1\|1660189_1660591_+	hypothetical protein	C7BGF7	Burkholderia_phage	3.0e-70	98.5
WP_069223249.1\|1661402_1661609_+	hypothetical protein	C7BGF3	Burkholderia_phage	3.2e-28	97.1
WP_081336178.1\|1661730_1662555_+	hypothetical protein	C7BGF1	Burkholderia_phage	8.0e-147	97.4
WP_081055114.1\|1662579_1662855_+	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	5.2e-42	92.2
WP_155769844.1\|1662926_1664102_-	hypothetical protein	NA	NA	NA	NA
WP_155769845.1\|1664403_1665642_-	hypothetical protein	NA	NA	NA	NA
WP_069223252.1\|1666174_1667449_-\|integrase	site-specific integrase	C7BGE7	Burkholderia_phage	2.4e-246	98.1
WP_011882540.1\|1667670_1668321_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.5e-42	47.6
WP_059548059.1\|1668497_1668959_+	CBS domain-containing protein	NA	NA	NA	NA
WP_059604953.1\|1669110_1669440_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_011882544.1\|1669949_1670348_+	elongation factor GreAB	NA	NA	NA	NA
WP_011882545.1\|1670546_1671635_-	porin	NA	NA	NA	NA
WP_081336179.1\|1672248_1672632_+	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA
WP_155769846.1\|1672876_1673086_-	hypothetical protein	NA	NA	NA	NA
WP_069223254.1\|1673082_1674834_-	gamma-glutamyltransferase	NA	NA	NA	NA
WP_059604963.1\|1675193_1676072_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_014725322.1\|1676102_1677449_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.2e-32	39.0
WP_069223255.1\|1677460_1679215_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_059577563.1\|1679851_1680991_+	patatin-like phospholipase family protein	NA	NA	NA	NA
1680709:1680728	attR	NA	NA	NA	NA
WP_059456122.1\|1681049_1681754_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_069223256.1\|1681873_1682773_+	transcriptional regulator GcvA	NA	NA	NA	NA
WP_011882554.1\|1682920_1683229_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069223257.1\|1683298_1684360_+	alkene reductase	NA	NA	NA	NA
WP_069223258.1\|1684372_1684900_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011882557.1\|1684986_1685598_+	LysE family translocator	NA	NA	NA	NA
WP_069223259.1\|1685867_1686233_-	transcriptional regulator	A0A222YXG1	Escherichia_phage	2.9e-32	56.8
WP_059456116.1\|1686237_1686540_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.2e-18	49.5
WP_069223260.1\|1686647_1687604_+	dienelactone hydrolase	NA	NA	NA	NA
WP_155769847.1\|1687600_1688515_-	phosphatidylinositol-specific phospholipase C domain-containing protein	NA	NA	NA	NA
WP_069223553.1\|1688521_1689544_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_069223261.1\|1689553_1690414_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_081336180.1\|1690410_1691319_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_069223262.1\|1691315_1692554_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_069223263.1\|1693001_1693880_-\|protease	metalloprotease	A0A1I9SA48	Rhodococcus_phage	7.2e-37	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013393

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection