CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013403	Burkholderia metallica strain FL-6-5-30-S1-D7 chromosome 2, complete sequence	0 crisprs	cas3,csa3,DinG	1
NZ_CP013401	Burkholderia metallica strain FL-6-5-30-S1-D7 chromosome 1, complete sequence	1 crisprs	csa3,cas3,DEDDh,DinG	3
NZ_CP013402	Burkholderia metallica strain FL-6-5-30-S1-D7 chromosome 3, complete sequence	0 crisprs	RT	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2435185 : 2490677

Escherichia_phage(60.0%)

holin,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069260660.1\|2435185_2436148_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069260661.1\|2436222_2438046_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_084636133.1\|2438137_2441758_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_069260662.1\|2441769_2443044_-	hypothetical protein	NA	NA	NA	NA
WP_069260663.1\|2443043_2443301_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_076606031.1\|2443395_2444334_-	hypothetical protein	NA	NA	NA	NA
WP_069260665.1\|2444333_2447342_-	hypothetical protein	NA	NA	NA	NA
WP_069260666.1\|2447347_2448361_-	hypothetical protein	NA	NA	NA	NA
WP_084636135.1\|2448360_2450706_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.5e-12	30.0
WP_069260668.1\|2451078_2452632_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_076606033.1\|2452680_2454027_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_069260670.1\|2454023_2454683_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069260671.1\|2454759_2455194_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_069260672.1\|2455379_2456054_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_069261227.1\|2456084_2456942_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069261228.1\|2457131_2458205_+	alkene reductase	NA	NA	NA	NA
WP_069261229.1\|2458337_2458664_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069260673.1\|2458736_2459177_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_069260674.1\|2459173_2459806_-	sarcosine oxidase subunit gamma	NA	NA	NA	NA
WP_069260675.1\|2459795_2462807_-	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_069260676.1\|2462803_2463103_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_006480591.1\|2463117_2464362_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_069260677.1\|2464377_2465763_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_069260678.1\|2466091_2467165_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_069260679.1\|2467424_2468129_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_069260680.1\|2468178_2469069_+	NAD-binding protein	A0A077SLF7	Escherichia_phage	6.3e-81	59.8
WP_069260681.1\|2469088_2470408_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.1e-88	46.0
WP_069260682.1\|2470404_2471043_+	aldolase	A0A077SK32	Escherichia_phage	1.3e-38	46.7
WP_069260683.1\|2471157_2472483_+	MFS transporter	NA	NA	NA	NA
WP_069260684.1\|2472546_2473323_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_069260685.1\|2473351_2474323_+	SDR family oxidoreductase	A0A2C9DSV6	Western_grey_kangaroopox_virus	9.6e-06	30.7
WP_069260686.1\|2474370_2475459_-	hypothetical protein	NA	NA	NA	NA
WP_069261230.1\|2475455_2476586_-	glycosyltransferase	NA	NA	NA	NA
WP_157126883.1\|2476687_2477263_-	hypothetical protein	NA	NA	NA	NA
WP_069260688.1\|2477330_2477990_+	response regulator	NA	NA	NA	NA
WP_069260689.1\|2477986_2479441_+	sensor histidine kinase	NA	NA	NA	NA
WP_069260690.1\|2479511_2480039_+	cytochrome b	NA	NA	NA	NA
WP_069261231.1\|2480306_2480582_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_069260691.1\|2480662_2481007_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_069260692.1\|2481249_2481939_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	NA	NA	NA
WP_069260693.1\|2481964_2482921_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069260694.1\|2483001_2483400_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_069260695.1\|2483620_2483890_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_069261232.1\|2483964_2485113_+	sialidase	NA	NA	NA	NA
WP_069260696.1\|2485182_2486115_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069261233.1\|2486263_2486689_+	PACE efflux transporter	NA	NA	NA	NA
WP_069260697.1\|2486698_2487325_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_069260698.1\|2487621_2488569_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011354068.1\|2488673_2489672_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_069260699.1\|2489780_2490677_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013401

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013401_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013401_1

1148138-1148239

Orphan

Consensus_repeat	Method
TGCCGGAGCGACCGGTGCGGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013401_1

>merge|NZ_CP013401|1|1148138-1148239|CRISPRCasFinder
TGCCGGAGCGACCGGTGCGGGCGCCGGTGCCGGCGACACGCCGAACAGCCCCTTCAGCCAGCCGATGAAGCCGCCGCTTGCCGGCGCGACCGGTGCGGGCGC

>NZ_CP013401|1|1|1148138-1148239|CRISPRCasFinder
TGCCGGAGCGACCGGTGCGGGCGC	CGGTGCCGGCGACACGCCGAACAGCCCCTTCAGCCAGCCGATGAAGCCGCCGCT
TGCCGGCGCGACCGGTGCGGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013401.1\|WP_069256143.1\|1156383_1157490_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP013401.1\|WP_069256133.1\|1143428_1144727_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP013401.1\|WP_069256135.1\|1145483_1146596_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP013401.1\|WP_069256139.1\|1152292_1152694_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|225057
NZ_CP013401.1\|WP_069256137.1\|1150626_1151631_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NZ_CP013401.1\|WP_069256144.1\|1157490_1158480_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP013401.1\|WP_069256128.1\|1136570_1137770_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_CP013401.1\|WP_006401288.1\|1143113_1143389_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013401.1\|WP_069256132.1\|1142631_1143117_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013401.1\|WP_069257963.1\|1140076_1141066_+\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NZ_CP013401.1\|WP_069256129.1\|1137857_1138520_+\|lactate-utilization-protein-C	unknown	unknown	gnl\|CDD\|224473
NZ_CP013401.1\|WP_069256140.1\|1152706_1153699_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132934
NZ_CP013401.1\|WP_006051932.1\|1156074_1156254_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NZ_CP013401.1\|WP_069256138.1\|1151636_1152296_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319835
NZ_CP013401.1\|WP_069256130.1\|1138563_1139994_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|379910
NZ_CP013401.1\|WP_069256142.1\|1155340_1155976_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NZ_CP013401.1\|WP_069256131.1\|1141062_1142541_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|224241
NZ_CP013401.1\|WP_011544932.1\|1153758_1154481_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|381176
NZ_CP013401.1\|WP_069256141.1\|1154477_1155110_-\|septum-formation-protein-Maf	unknown	unknown	gnl\|CDD\|235009
NZ_CP013401.1\|WP_069256134.1\|1144839_1145457_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725

Protein	Function_ID	Function_description	E-value
NZ_CP013401.1\|WP_069256143.1\|1156383_1157490_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	0
NZ_CP013401.1\|WP_069256133.1\|1143428_1144727_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.30324e-158
NZ_CP013401.1\|WP_069256135.1\|1145483_1146596_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	1.34174e-172
NZ_CP013401.1\|WP_069256139.1\|1152292_1152694_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|225057	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only].	5.39134e-16
NZ_CP013401.1\|WP_069256137.1\|1150626_1151631_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	2.61874e-125
NZ_CP013401.1\|WP_069256144.1\|1157490_1158480_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NZ_CP013401.1\|WP_069256128.1\|1136570_1137770_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_CP013401.1\|WP_069256132.1\|1142631_1143117_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.30235e-17
NZ_CP013401.1\|WP_069257963.1\|1140076_1141066_+\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	4.1413e-160
NZ_CP013401.1\|WP_069256129.1\|1137857_1138520_+\|lactate-utilization-protein-C	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	6.6894e-42
NZ_CP013401.1\|WP_069256140.1\|1152706_1153699_+\|S49-family-peptidase	gnl\|CDD\|132934	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain.	1.0034e-81
NZ_CP013401.1\|WP_006051932.1\|1156074_1156254_+\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	2.00344e-23
NZ_CP013401.1\|WP_069256138.1\|1151636_1152296_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319835	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.30442e-70
NZ_CP013401.1\|WP_069256130.1\|1138563_1139994_+\|sodium:proton-antiporter	gnl\|CDD\|379910	pfam16980, CitMHS_2, Putative citrate transport. CitMHS is a family of putative citrate transporters, belonging to the Na+/H+ antiporter NhaD-like permease superfamily.	0
NZ_CP013401.1\|WP_069256142.1\|1155340_1155976_+\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	1.89758e-26
NZ_CP013401.1\|WP_069256131.1\|1141062_1142541_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|224241	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only].	1.59284e-102
NZ_CP013401.1\|WP_011544932.1\|1153758_1154481_-\|SAM-dependent-methyltransferase	gnl\|CDD\|381176	cd11649, RsmI_like, uncharacterized subfamily of the tetrapyrrole methylase family similar to Ribosomal RNA small subunit methyltransferase I (RsmI). RsmI, also known as rRNA (cytidine-2'-O-)-methyltransferase, is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	1.10943e-136
NZ_CP013401.1\|WP_069256141.1\|1154477_1155110_-\|septum-formation-protein-Maf	gnl\|CDD\|235009	PRK02141, PRK02141, Maf-like protein; Reviewed.	3.11163e-128
NZ_CP013401.1\|WP_069256134.1\|1144839_1145457_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.21475e-87

>NZ_CP013401.1|WP_069256135.1|1145483_1146596_-|GTP-3',8-cyclase-MoaA
MSRRIIPLADVSGMPDVSGVAHAPDGTLADTFARPLRDLRISVTDRCNFRCVYCMPRAVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKRMNDAEFASADVLDGIFAAQAAGLAPVKVNMVVKRGTNDSEILPMAERFRGTGVILRFIEYMDVGTSNGWNMTEVLPSADVVARIAEHFPLVPLDPHTAAETAQRWGYADGSGEIGVISSVTQAFCGDCTRARLSTEGKLYLCLFASTGHDLRALVRGGASDAEIATAIARIWQARTDRYSQLRGSASADALPDGGGKRVEMSYIGG
>NZ_CP013401.1|WP_069256134.1|1144839_1145457_-|molybdenum-cofactor-guanylyltransferase-MobA
MPASTPPSIAGLLLAGGRATRMDGVDKGLQLLDGTPLALHVLRRLSPQVDETLISANRHADRYAELGAPFDARIVADETPDFPGPLAGLLAGMRAARAPLVACSPCDTPYLPADLVARLLAALDTRQADIAMAVTVDARQARSPQPTFALLRTSLADDLAARLAAGDRKVRAWYARHKTVEVEFRDERAFYNANSWQELAALARR
>NZ_CP013401.1|WP_069256133.1|1143428_1144727_-|molybdopterin-molybdotransferase-MoeA
MITQSSSASRSAPDSDAPLSLADAQALACRFAVPVDACATVALRDALDRVLAADVNAPFDIPAYDNSAMDGYAFDGSAGTHAAPPADVALTIAGTALAGHPFDGAVTAGSCVRIMTGAPMPAGCDTVIPQERVRVDGDTIHFAAHDIARGANCRKAGEDLARGACALAAGRILRPSDLGLLASFGFSEVAVRRRVRVAVFSTGDELREPGAPFGRGTLYDSNRGMLIAMLERLHVDAIDLGIVRDDPAALETALRDAVAAQADAVITSGGVSVGEADFTRDVMATLGDVTFASLALRPGRPLACGTLARPADGAGHTLFFGLPGNPVASAVTFYAIVRPALLTLAGAQAQPPAMYTALSTHALKTRTGRTDYLRGIATRAADGHWHVAPAGSQSSASLSGLSAANCFIVLGHDTAAVDAGTPVDILPFDGLI
>NZ_CP013401.1|WP_006401288.1|1143113_1143389_-|hypothetical-protein
MKKQISSIAAGQTAKALILVYLTFSVPIVLLGILVAYVRYGMVELSTILSALLLNAILGFVLLWIACHAYNWVASRFGGIEIVLSDPPEEA
>NZ_CP013401.1|WP_069256132.1|1142631_1143117_-|GNAT-family-N-acetyltransferase
MSGTPLIRAAEARDVGAILALMRELAEFEKLTDLFVATQADLADALFGEHPAAEARVAEQDGAIVAYALFFHNYSTFLGRRGLYLEDLYVQPSQRGTGLGTAMLRHLAALAVERRCGRFEWSVLDWNQPAIDFYEKMGATVLPDWRIVRVTGDALDTLAGQ
>NZ_CP013401.1|WP_069256131.1|1141062_1142541_+|DNA-recombination-protein-RmuC
MTMTLLLAAVVVLAVALAVAIVVLVRGGGRHDDTAVLGDQIADAAHAQARAVERLERELRGEIVESARGSRTELAGSFSQLQQMLAAQLTSVATVQNNQIEGFAQQLGKLVAGNAQQFDAMRESLQRQAQQARDEQTGALRLFGDTLHRQLTQLTEANDRRIGEVRATLEQRLKEIETNNAAKLEEMRRTVDEKLHATLEQRLGESFKLVSDRLEQVHRGLGEMQTLAAGVGDLKKVLTNVKTRGTWGEVQLEALLEQMLTPEQYAKNVATVPKSSERVEFAIRLPGRDAGTRDAPPVWLPIDAKFPREDYERLIDAQERADAVAVEEAARALEARVRLEARTIAEKYVSPPHTTDFALLFLPTEGLYAEILRRPGLTDLLQRDYRVTVAGPTTLTALLNSLQMGFRTLAIEQRSSEVWQVLGAVKTEFGKFGDVLARTKAQLETVTRSIESAEQRTRVMSRKLKQVEALPGDTAAGLLGAEGADGADADDA
>NZ_CP013401.1|WP_069257963.1|1140076_1141066_+|D-glycerate-dehydrogenase
MQKILVARPIFPDVIERLKQYFDVDWNNGDALAPDALAARLADKDGALTAGDPVGAAALAAAPRLRVVANMAVGYNNFDIAAFNAANVLGTNTPDVLNESTADFGWALMMAAARRIAESEHWLRAGHWQKWAYDGFLGSDIYGSTLGVIGMGRIGQALARRARGFGMQVIYHNRSRVAPEIEAELNAEYVPKDALLARADHVVLVLPYTKENHHTIGAAELARMKPTATLTNIARGGIVDDAALAAALRDGTIAAAGLDVYEGEPTVHPALLEVPNVVLTPHIASATEKTRRAMANLAADNLIAALGEGPRAGQPPNPINPDVIGKPRA
>NZ_CP013401.1|WP_069256130.1|1138563_1139994_+|sodium:proton-antiporter
MKRHAAWAGMASGVALGAVPALASAATLDGATLSALWGIPFAGILLSIALFPLVAPVFWHHHFGKIAAGWAIVFLIPFGFAFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGSPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRANDNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFALDTYFYRKGGEERPATLDPTPDSARLSIDGKINFVLLAAVIGLVLMSGVWKPDVTFDVWGTHVALQNLVRDVALAVVTLASLALTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGADGAFAQIVHLVTGPDGKPIDAMYFWATGILSSFLDNAPTYLVFFNLAGGDAQSLMTTGASTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVKMPSFFAYLGWALVVLIPVFLLTSWLFFTA
>NZ_CP013401.1|WP_069256129.1|1137857_1138520_+|lactate-utilization-protein-C
MDTSAARRQILARIRAAQARAAEPDAAERDGVADYLARHPQGPRPPAPADLVAAFVDEAARLSTTVDEVATLADAPAAAARYLSAQGLPMQAVAWRTLADLDWAGAGLSVECRKPRDGDLVGLTGCFCATAETGSLVLLSGPDTYASAGLLPETHIALVPASRIVAGHEDAFALIRSERGELPRAVNFVSGPSRTGDIEQTIVLGAHGPYRVHVIVVRGA
>NZ_CP013401.1|WP_069256128.1|1136570_1137770_+|nicotinate-phosphoribosyltransferase
MIITSLLDTDLYKFTMMQVVLHHFPAASVEYRFRCRTPGVDLVPYIDEIRDEVRGLCALRFSDVELDYLRRMRFIKSDFVDFLALFHLNEKYISITPSPKGNGEIDIEITGPWLHTILFEIPVLAIVNEVYFRNTQREPDYREGRERLREKIKLLGAEPEFADCKIADYGTRRRFSKVWHEEVALTLRDGLGPQFAGTSNVLYAMKHGITPLGTMAHEYLQACQALGPRLRDSQIYGFEMWAKEYRGDLGIALSDVYGMDAFLNDFDMYFCKLFDGARHDSGDPFDWGERMLRHYEMNRCDPRTKVLVFSDALDIPKVMQLYERFRGRCKLAFGVGTNLTNDLGYVPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGIAQPVEEDASK
>NZ_CP013401.1|WP_069256137.1|1150626_1151631_+|RluA-family-pseudouridine-synthase
MNELGKISQNSLASGQVSMIEIDENSAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRVDAQYRLAHGDVVRVPPVRVAAADLARADTPVVPPANFNVLYEDDAMLVIDKPAGVAVHGGSGVAFGVIEQMRQARPRAKFLELVHRLDRETSGILMLAKKRTALVGLHEQIRENRMDKRYFACAHGEWQPDWGRRRAVKAPLFKYSTPEGERRVRVQDDGLPSHTVFNLIDRWPEYALVEAELKTGRTHQIRVHLAHLGLPIAGDAKYGDFALNKALARANAQPSLKRMFLHAYRLRLAHPLTGEALQFDAPLPDECRRFLDQLSALRDTA
>NZ_CP013401.1|WP_069256138.1|1151636_1152296_+|HAD-IA-family-hydrolase
MARQQFDLIVFDWDGTLMDSTAHIAHSIQAACRDLGLPTPSDEASRYVIGLGLRDALQITAPTLDPSDYSRLAERYRYHYLLDDQRIELFAGVRELLAELRDTGYLLAVATGKGRVGLNRVLDQSKLTSLFDATRCADETFSKPHPAMLHELSRELGQDLARTVMIGDTTHDLQMAASAGAAGVGVAYGAHTAEALAALAPRFVAPDVDALAAWLREHA
>NZ_CP013401.1|WP_069256139.1|1152292_1152694_+|Rieske-2Fe-2S-domain-containing-protein
MSAAPDAVRVCASDALADGGAGVRVDATLRGEQAVVFFVRYEGRAYGYLNRCAHVPMELDWAEGQFFESSGLYLMCATHGAIYEPNTGKCVGGPCRGGRLRPVEVDERDTSDGRAVFWVPDADLRPAVSATTD
>NZ_CP013401.1|WP_069256140.1|1152706_1153699_+|S49-family-peptidase
MADQPNSPQSSSLPDSREPNWERAALERIALAAVKEQRAARRWKIFFRFAFLGVFVLLAFALIDFSSDAKFTSSGRHTALVTIDGEIAAGVSANADDIITALDAAFDDDGTAGVVLRINSPGGSPVQAGMVYDEIRRLRAKHPDTPLYVVVTDMCASGGYYIASAADKIFVDKASIVGSIGVLMDGFGFTGLMGKLGVERRLHTSGENKGFYDPFSPETPKMDAHAQALLDQVHAQFIKAVKDGRGKRLHETPDMFSGLFWTGEKSVELGLADGYGTTDTVARDVLKAPDLVDYTVKESLTNRVARKFGAAVGSAAMKALTAGGASVSLR
>NZ_CP013401.1|WP_011544932.1|1153758_1154481_-|SAM-dependent-methyltransferase
MTAGTLYLVPNTLGEGDESMLAAVLPAAVQARAGTLGYYIGENAKTTRAFLKKIGTTRPIQEIEISELNVNTPAGAIDRLLAPVLAGADAGLVSEAGCPAVADPGALLVRRAHERGVKVVPLVGPSSILLALMASGLNGQSFAFNGYLPVDAAARAKRLRELEQLSRKARQTQIFIETPYRNHAMLDTLVATCAPSTQICVAADLTLATETIASRTVADWKKAPAPNLHKRPAIFLLLAN
>NZ_CP013401.1|WP_069256141.1|1154477_1155110_-|septum-formation-protein-Maf
MPDTVCRPPRLILASSSRYRRALLERLGIPFDVVSPDLDETPHDGETPAATALRLAGAKARAVAATIDAPDGVLVIGSDQVATFDGLQIGKPGTHARALAQLVSMQGREVEFHSALCLYDSRTDDAQVEDVVTHVRFRSLPEAELDAYLHAETPYDVAGSAKSEGLGIALLDAIDSNDPTALVGLPLIALTRMLRAAGYPLFATTRGDRA
>NZ_CP013401.1|WP_069256142.1|1155340_1155976_+|DUF177-domain-containing-protein
MNTSSGKPAAALDPHAVDLFEFARSGRQAAGAVRLSQLPRMLNEVPADAPDRDTVFTWQAEGFTQKELQDDGADGQQPYLRLAVHGHAWLVCQRCMTPYDQTFDVDMTYRVVATEEEAEEFPLDDDEADVIVGSRQFDLVDLIEEELLLSLPLVPKHEVCPAVHESLVSGASGPAEETDDTSDEAGDEGKRPNPFAALEALKKDGDGTKKH
>NZ_CP013401.1|WP_006051932.1|1156074_1156254_+|50S-ribosomal-protein-L32
MAVQQNKKSPSKRGMHRSHDFLTAAPLAVEPSTGEVHLRHHVSPNGYYRGKKVVKTKND
>NZ_CP013401.1|WP_069256143.1|1156383_1157490_+|phosphate-acyltransferase-PlsX
MTVKLTIDCMGGDHGPSVTVPAAVKFVRAHPDAHLMLVGIESAIRAQLKKLKALDDPALTIVPATEVVAMDDPVEVALRKKKDSSMRVALNHVKEGAAQACISAGNTGALMAVSRYVLKTLPGIERPAIAFALPNPTGYTMMLDLGANVDCEPQHLLQFAEMGHALVAALEGKERPTIGLLNIGEEMIKGNETIKRAGELLRASTLNFRGNVEGNDIYKGTVDVIVCDGFVGNVALKTSEGLAQMLSDIIREEFGRSLMSKLMALLALPVLMRFKKRVDHRQYNGAALLGLKSLVIKSHGSADAYAFEWAIKRGYDAVKNGVLERLARAMADNSVSLGEGEHDSGGAGHASPAAGPHAEPSAAQSSKA
>NZ_CP013401.1|WP_069256144.1|1157490_1158480_+|ketoacyl-ACP-synthase-III
MAQSTLYSRVLGTGSYLPPDRVTNQQLTDRLAKDGIETSDEWIVARTGIHARHFAAPDVTTSDLALEASRRAIEAAGIDPQSIDLIIVATSTPDFVFPSTACLLQNKLGIKNGGAAFDVQAVCSGFAYAMATADSFIRSGQHRTALVIGAETFSRILDFKDRTTCVLFGDGAGAVILSASEEPGVLGSALHADGSYSHILCTPGNVNRGVIEGSAFLYMDGQAVFKLAVNVLEKVAIEALAKANLAPEQIDWLIPHQANIRIMTSTCRKLGLPQERMVVTVDQHGNTSAASIPLALDTAVRDGRIQRGQHVLIEGVGGGFTWGASVFRY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

403263 : 454328

uncultured_Caudovirales_phage(60.0%)

tail,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069255591.1\|403263_403791_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	9.7e-21	52.0
WP_069255592.1\|404190_404925_-	response regulator transcription factor	NA	NA	NA	NA
WP_084635993.1\|404926_406012_-	histidine kinase	NA	NA	NA	NA
WP_069255593.1\|406428_406968_+	hypothetical protein	NA	NA	NA	NA
WP_069255594.1\|407329_407533_+	hypothetical protein	NA	NA	NA	NA
WP_069255595.1\|407592_408393_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_069255596.1\|408766_411940_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.0e-56	28.2
WP_069255597.1\|416577_416853_+	hypothetical protein	NA	NA	NA	NA
WP_157126706.1\|419923_421144_+	sugar-binding protein	A0A2H4JFP5	uncultured_Caudovirales_phage	5.9e-45	50.8
WP_157126707.1\|421243_421588_+	hypothetical protein	NA	NA	NA	NA
WP_069255600.1\|421875_422193_+	hypothetical protein	NA	NA	NA	NA
WP_069255601.1\|422274_423057_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069255602.1\|423053_424400_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_069255603.1\|424502_425114_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_069255604.1\|425485_426115_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_006484395.1\|426159_426675_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_059499710.1\|426690_428181_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006477093.1\|428251_428755_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_021161818.1\|428818_429304_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_069255605.1\|429381_431217_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_069255606.1\|431180_432281_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069255607.1\|432325_434995_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	8.5e-89	31.6
WP_069255608.1\|435037_436159_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_069255609.1\|436281_438960_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.6e-50	25.0
WP_157126708.1\|438961_440395_+	hypothetical protein	NA	NA	NA	NA
WP_157126709.1\|440396_441143_+	hypothetical protein	NA	NA	NA	NA
WP_076605855.1\|441186_442017_+	hypothetical protein	NA	NA	NA	NA
WP_069255612.1\|442221_443085_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_069255613.1\|443261_444095_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_069255614.1\|444307_445144_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_084636032.1\|445457_445973_-	hypothetical protein	NA	NA	NA	NA
WP_069255616.1\|446166_447141_-	OmpA family protein	NA	NA	NA	NA
WP_069255617.1\|447145_448135_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_069255618.1\|448131_452076_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_069255619.1\|452377_453223_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_069255620.1\|453344_454328_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

1713196 : 1727228

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069256537.1\|1713196_1713529_-	DNA-binding protein	A9YWU9	Burkholderia_phage	8.0e-13	62.3
WP_069256538.1\|1713525_1714017_-	hypothetical protein	Q6JII8	Burkholderia_virus	1.8e-29	61.3
WP_157126729.1\|1714009_1714162_-	hypothetical protein	NA	NA	NA	NA
WP_076605945.1\|1715693_1716629_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	4.2e-99	56.6
WP_069257991.1\|1716710_1717355_-	recombinase	K7ZRM9	Xanthomonas_citri_phage	2.8e-14	29.9
WP_069256541.1\|1717341_1718361_-	hypothetical protein	A9DEN8	Yersinia_phage	1.4e-60	53.0
WP_167375366.1\|1718357_1718525_-	hypothetical protein	NA	NA	NA	NA
WP_069256542.1\|1718521_1718887_-	hypothetical protein	A0A0H5AWA3	Pseudomonas_phage	5.9e-25	57.7
WP_069256543.1\|1719002_1719284_-	hypothetical protein	A0A1B0VMD8	Pseudomonas_phage	1.0e-13	50.6
WP_157126731.1\|1719280_1719697_-	hypothetical protein	Q3HQW8	Burkholderia_phage	9.4e-19	75.0
WP_069256544.1\|1719693_1719969_-	hypothetical protein	NA	NA	NA	NA
WP_157126732.1\|1720017_1720164_-	hypothetical protein	NA	NA	NA	NA
WP_167375367.1\|1720192_1720351_-	hypothetical protein	NA	NA	NA	NA
WP_076605897.1\|1720347_1720590_-	hypothetical protein	A0A291LA56	Bordetella_phage	3.0e-25	64.6
WP_069256545.1\|1720763_1721165_-	hypothetical protein	NA	NA	NA	NA
WP_069256546.1\|1721166_1721382_-	hypothetical protein	NA	NA	NA	NA
WP_084636014.1\|1721935_1722613_-	LexA family transcriptional regulator	A0A1I9KG86	Aeromonas_phage	6.6e-30	36.5
WP_069256547.1\|1722722_1722941_+	hypothetical protein	NA	NA	NA	NA
WP_069256548.1\|1723049_1723421_+	hypothetical protein	A9YWX9	Burkholderia_phage	7.0e-58	87.7
WP_069256549.1\|1723417_1723627_+	hypothetical protein	A9YWY0	Burkholderia_phage	1.1e-15	63.3
WP_157126733.1\|1723696_1724236_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_157126734.1\|1724285_1725182_+	hypothetical protein	U6C6J3	Ralstonia_phage	3.9e-46	77.0
WP_069256553.1\|1725183_1725930_+	hypothetical protein	U6C6D0	Ralstonia_phage	1.0e-52	49.6
WP_076605898.1\|1725926_1726211_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_069256554.1\|1726204_1726696_+	hypothetical protein	NA	NA	NA	NA
WP_157126735.1\|1726692_1726980_+	hypothetical protein	NA	NA	NA	NA
WP_069256555.1\|1726976_1727228_+	hypothetical protein	E5FFF4	Burkholderia_phage	8.4e-15	54.3

DBSCAN-SWA_3

1744853 : 1751385

Burkholderia_virus(37.5%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069256573.1\|1744853_1746326_+	hypothetical protein	Q9G0D8	Ralstonia_phage	1.8e-24	57.1
WP_157126740.1\|1746327_1746522_+	hypothetical protein	NA	NA	NA	NA
WP_069257995.1\|1746514_1746850_+\|holin	holin	Q6J1Q7	Burkholderia_virus	1.6e-40	79.3
WP_069256574.1\|1746851_1747121_+\|holin	holin	Q6J1Q6	Burkholderia_virus	2.8e-24	61.8
WP_069256575.1\|1747113_1747533_+	glycoside hydrolase family protein	A0A1Q1PW74	Pseudoalteromonas_phage	5.5e-27	47.4
WP_069256576.1\|1747529_1748009_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	3.5e-62	86.6
WP_069256577.1\|1748038_1748296_-	hypothetical protein	NA	NA	NA	NA
WP_069256578.1\|1748379_1749030_+	hypothetical protein	C7BGE4	Burkholderia_phage	7.8e-113	90.0
WP_076605948.1\|1749596_1750175_-	hypothetical protein	A0A2H4N7D9	Pectobacterium_phage	2.1e-29	51.0
WP_069256579.1\|1750869_1751385_+	GNAT family N-acetyltransferase	A0A1B2IA70	Erwinia_phage	5.6e-05	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013403

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013401

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection