CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013433	Burkholderia vietnamiensis strain AU1233 chromosome 1, complete sequence	2 crisprs	cas3,RT,csa3,DinG,DEDDh,WYL	0	1	11	0
NZ_CP013434	Burkholderia vietnamiensis strain AU1233 chromosome 2, complete sequence	1 crisprs	PD-DExK,RT	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013433_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013433_1

3541866-3541972

Orphan

Consensus_repeat	Method
GCACTGAAGCAGGTTCAGTGCCTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013433_1

>merge|NZ_CP013433|1|3541866-3541972|CRISPRCasFinder
GCACTGAAGCAGGTTCAGTGCCTCAAAAAACAGGGCGCAAAACAAAGGCACTGAACGACGTTCAGCAGCCTGTGGATAAAGGCACTGAAGCAGGTTCAGTGCATCAA

>NZ_CP013433|1|1|3541866-3541972|CRISPRCasFinder
GCACTGAAGCAGGTTCAGTGCCTCAA	AAAACAGGGCGCAAAACAAAGGCACTGAACGACGTTCAGCAGCCTGTGGATAAAG
GCACTGAAGCAGGTTCAGTGCATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013433.1\|WP_155772603.1\|3545732_3546260_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138
NZ_CP013433.1\|WP_069264889.1\|3542832_3543156_+\|DUF1064-domain-containing-protein	unknown	unknown	gnl\|CDD\|283910
NZ_CP013433.1\|WP_060122602.1\|3538146_3538455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_155772600.1\|3538804_3539377_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP013433.1\|WP_155772602.1\|3543750_3543894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264139.1\|3546266_3546458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_155772655.1\|3539495_3539696_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264119.1\|3540843_3541158_+\|DUF4406-domain-containing-protein	unknown	unknown	gnl\|CDD\|379581
NZ_CP013433.1\|WP_069264133.1\|3544890_3545091_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_155626108.1\|3539803_3540124_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP013433.1\|WP_081333218.1\|3544198_3544801_+\|DUF2829-domain-containing-protein	unknown	unknown	gnl\|CDD\|378590
NZ_CP013433.1\|WP_069264131.1\|3543893_3544142_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_155772601.1\|3543463_3543751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_172820431.1\|3545120_3545531_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264117.1\|3540556_3540832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264113.1\|3538566_3538854_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264115.1\|3540290_3540560_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP013433.1\|WP_069264121.1\|3541257_3541524_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264127.1\|3543155_3543449_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013433.1\|WP_069264111.1\|3537940_3538150_-\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP013433.1|WP_069264121.1|3541257_3541524_+|hypothetical-protein
MSVKILSWAIRVPVNEPIQKLVLLALADGVAPDSLKIALHYNQAEPGWDFGDALNWLFMEGLIKVEDERLYFFLGSRDGWEDRSGHTL
>NZ_CP013433.1|WP_069264119.1|3540843_3541158_+|DUF4406-domain-containing-protein
MRVYISGPMTGCVDHNRPAFRVTAARLRALGYEVVSPDELNPEGCGRDWLGCMRVDIKHLVDCDAIAMLEGWHSSRGAWLEYVIALTLGHAVFRAVDIVERMAA
>NZ_CP013433.1|WP_069264117.1|3540556_3540832_+|hypothetical-protein
MRRLLSYQIFERVSEIVDNAYQCEFENEPGGAGRVKVIMTDRTVEIPFHDADLFVGIDEFAARHLLPALLPDLTCLSCGACVRVGGQPCGH
>NZ_CP013433.1|WP_069264115.1|3540290_3540560_+|helix-turn-helix-domain-containing-protein
MSLHHENLAWEIELPSVKKIVLLAIARAAHLNNRECCPSVQHLAFKCGLSESAVRSGIEALVELGLLEVMKVPGKGRVYRVMLGVEQPA
>NZ_CP013433.1|WP_155626108.1|3539803_3540124_+|transcriptional-regulator
MRIIVDQSCVPVTERARKSHSLALQRISAKGQNTIATEIGVSPPTVSRFVSDDLERACQVLAAAGLKVVPVEMQCFPPRKVEMLLELARDHLSQLKSVDQLSWEDA
>NZ_CP013433.1|WP_155772655.1|3539495_3539696_+|hypothetical-protein
MDPNVVIDRLGGTSAVARICDIKPPSVHAWRTSGIPKPWLKFLRLAHPKVFEADWRPAAPNEQAVA
>NZ_CP013433.1|WP_155772600.1|3538804_3539377_-|hypothetical-protein
MDTWNNRLADAFEKSGYSMNKLAKEVGVSAPTFAAWIGAANIKPAQDITANNLFKVCRLLRVRPEWVLLNQPPRGVSDEIDSSDETVKGFATENGEALADMDRKSRVYLSSLASSACGKVPNEQLDEFIAELKAAIDKDRLTPHRFFLLRELLREGAETHGASIENQRIKTRGGHGRRDSTRGKTGTRDT
>NZ_CP013433.1|WP_069264113.1|3538566_3538854_-|hypothetical-protein
MADEIQHAEKPAPEIPDNVFEMEAYRNEKRRKTRGAQLPIERGRSGFDVEAHLFVNVCSDGETRFGVVGADGDNAICLLEPIFILGQQLVQLTDN
>NZ_CP013433.1|WP_060122602.1|3538146_3538455_-|hypothetical-protein
MAHGTAKQIDKSVAVTIDDRTFNGHYAYIQGGSFTLGTAFSGGQVATGNAIGVSATGNGNVLAQSADGHNLRCVFSFSGWSQSGAGTCLTDDNQLYDLQIAR
>NZ_CP013433.1|WP_069264111.1|3537940_3538150_-|hypothetical-protein
MNGREGFRRVAQAIMGIGWIWAALMCVAALTAFANGRSEIAFLWIISGAIGWGAAKATAWIIRGFVSPG
>NZ_CP013433.1|WP_069264889.1|3542832_3543156_+|DUF1064-domain-containing-protein
MQALGRLPVGRMNKTEAAYAELLAARVHVGEILEFKFESLKLRLADRTWYTPDFAVVLPDGAREIHEVKGRWADDARVKIKVAAELYPYYRFIAIRRVKGEWVREVF
>NZ_CP013433.1|WP_069264127.1|3543155_3543449_+|hypothetical-protein
MVARSNKREREHMGRIAGMECICCYLLGRKQQSKTDVHHVRVGHGGAQRAGDFCTVPLCHDDCHQGKNGVHGDQTYLRILKVTQIDLLNATLERLYG
>NZ_CP013433.1|WP_155772601.1|3543463_3543751_+|hypothetical-protein
MELQLRHLVFAKREPYEEFECVVVRLHKPVVYERGRPSFIHVDVDLPERYAALSSPRQRNADGTYRVEALLKHNRKSLAPFLASDASTLDVKGAN
>NZ_CP013433.1|WP_155772602.1|3543750_3543894_+|hypothetical-protein
MALIACIVWLTCNAGIGLLWIAGQILVIPGRVIVRIAARLSAALGGD
>NZ_CP013433.1|WP_069264131.1|3543893_3544142_+|hypothetical-protein
MAELHSLPLNGHASTNHDVAQHLREQADWIDAGEYKDVRNVFMVIETADGRLVRQTCGASCDRARAVGILTTAAARAATGDE
>NZ_CP013433.1|WP_081333218.1|3544198_3544801_+|DUF2829-domain-containing-protein
MAKFRKKPVTIDAITFDELVEHGKASGAPLTNGMPWSFTYNGHAITHECDDCYLIPTLEGTHHMTPADMLITGVKGEIYPCKLEIFEATYDAAAAAQAPTRAPTDNDIEAAARFDFGAALAWLKTGARVARAGWNGKGQFVYLVPAASYPVQTGAAKAHFGEGSLVPYNAYLALKGVDDTVSTWVPSVTDCLAEDWHVVK
>NZ_CP013433.1|WP_069264133.1|3544890_3545091_+|hypothetical-protein
MKRIAILLMLLLLGACDPYANNLSGNVKVNTIMAENGVPCVMAVGGGQGGLALSCDWGHQHQRVPN
>NZ_CP013433.1|WP_172820431.1|3545120_3545531_+|hypothetical-protein
MMDRIDELLLDWYEWSQGYNPGVDYQAFDSSTAQFRSSRQWMEYEELNEEVDWQLKKTVGKLVEPMIQKLDLRARVAINSAMRNFSVGASVWSSPRLSNGLDAGAEYWRAKTILCPQMIAAGLIQRDACKALESAL
>NZ_CP013433.1|WP_155772603.1|3545732_3546260_+|hypothetical-protein
MSDLNAAPSSTEPAADVAPMSPAELAALPDWVKNGQPPAPEAGTAAVGETAAAPAAAVPSDISATTFVAAAASGVTPAAGETGNVSAATAAPTTSTQPTSDASEQADASATGSSAVADAPAIVQEGTVSADSINLGAHLSRLDGILAELERKLALGIHTFAHEITAARDHLAKLL
>NZ_CP013433.1|WP_069264139.1|3546266_3546458_+|hypothetical-protein
MRTEATHVVCCPTSPNDGKRVRVISEHGYNPHTDAYERGWVEVELVDTGVCGSIERRFLAEVQ

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Crispr_ID: NZ_CP013433_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013433_2

3785657-3785729

Orphan

Consensus_repeat	Method
CTCTCGCCCCATGCTTCGCGGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013433_2

>merge|NZ_CP013433|2|3785657-3785729|CRISPRCasFinder
CTCTCGCCCCATGCTTCGCGGTCGGCGAGAGTTGGCGCTTCAGCGCTTGCTCTCACCCCATGCTTCGCGGTCG

>NZ_CP013433|2|2|3785657-3785729|CRISPRCasFinder
CTCTCGCCCCATGCTTCGCGGTCG	GCGAGAGTTGGCGCTTCAGCGCTTG
CTCTCACCCCATGCTTCGCGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013433.1\|WP_011884656.1\|3797895_3800379_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP013433.1\|WP_011884645.1\|3785881_3786700_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380065
NZ_CP013433.1\|WP_041493957.1\|3782609_3782891_+\|PXPV-repeat-protein	unknown	unknown	gnl\|CDD\|372309
NZ_CP013433.1\|WP_011884625.1\|3775163_3776156_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP013433.1\|WP_011884628.1\|3777037_3777367_+\|DUF3613-domain-containing-protein	unknown	unknown	gnl\|CDD\|289069
NZ_CP013433.1\|WP_059463911.1\|3777461_3779384_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NZ_CP013433.1\|WP_069264225.1\|3793835_3795389_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP013433.1\|WP_011884649.1\|3789059_3789686_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|378068
NZ_CP013433.1\|WP_011884637.1\|3781727_3782315_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|212463
NZ_CP013433.1\|WP_045579474.1\|3795375_3796623_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP013433.1\|WP_014722954.1\|3786916_3788137_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273324
NZ_CP013433.1\|WP_011884652.1\|3791732_3792677_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380544
NZ_CP013433.1\|WP_059454401.1\|3792759_3793797_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226633
NZ_CP013433.1\|WP_059476060.1\|3783856_3785611_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236359
NZ_CP013433.1\|WP_069264223.1\|3782921_3783827_-\|DUF1571-domain-containing-protein	unknown	unknown	gnl\|CDD\|377879
NZ_CP013433.1\|WP_045579475.1\|3788405_3788948_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP013433.1\|WP_011884635.1\|3780939_3781644_+\|DUF2968-domain-containing-protein	unknown	unknown	gnl\|CDD\|378583
NZ_CP013433.1\|WP_069264221.1\|3779493_3780885_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013433.1\|WP_059463903.1\|3776174_3777017_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP013433.1\|WP_011884651.1\|3789724_3791443_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732

Protein	Function_ID	Function_description	E-value
NZ_CP013433.1\|WP_011884656.1\|3797895_3800379_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP013433.1\|WP_011884645.1\|3785881_3786700_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380065	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in the Pseudomonas aeruginosa PsrA which regulates the fadBA5 beta-oxidation operon. Functional analysis of PsrA indicated its importance in regulating b-oxidative enzymes. It has also been suggested that PsrA, a member of the TetR family of repressors, could affect global gene expression including activation of rpoS.	1.14228e-22
NZ_CP013433.1\|WP_041493957.1\|3782609_3782891_+\|PXPV-repeat-protein	gnl\|CDD\|372309	pfam12778, PXPV, PXPV repeat (3 copies). This short repeat is found in multiple copies in a variety of Burkholderia proteins. The function of this region is unknown.	0.00458669
NZ_CP013433.1\|WP_011884625.1\|3775163_3776156_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	2.56766e-13
NZ_CP013433.1\|WP_011884628.1\|3777037_3777367_+\|DUF3613-domain-containing-protein	gnl\|CDD\|289069	pfam12266, DUF3613, Protein of unknown function (DUF3613). This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.	2.36803e-12
NZ_CP013433.1\|WP_059463911.1\|3777461_3779384_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	2.90911e-26
NZ_CP013433.1\|WP_069264225.1\|3793835_3795389_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP013433.1\|WP_011884649.1\|3789059_3789686_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|378068	pfam08857, ParBc_2, Putative ParB-like nuclease. This domain is probably distantly related to pfam02195. Suggesting these uncharacterized proteins have a nuclease function.	9.58383e-76
NZ_CP013433.1\|WP_011884637.1\|3781727_3782315_-\|RNA-chaperone-Hfq	gnl\|CDD\|212463	cd01716, Hfq, bacterial Hfq-like. Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotropic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.	2.34782e-30
NZ_CP013433.1\|WP_045579474.1\|3795375_3796623_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.94367e-43
NZ_CP013433.1\|WP_014722954.1\|3786916_3788137_-\|MFS-transporter	gnl\|CDD\|273324	TIGR00891, Carboxylic_acid_transporter_protein_homolog, putative sialic acid transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.10706e-108
NZ_CP013433.1\|WP_011884652.1\|3791732_3792677_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380544	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	3.40433e-132
NZ_CP013433.1\|WP_059454401.1\|3792759_3793797_-\|hypothetical-protein	gnl\|CDD\|226633	COG4158, COG4158, Predicted ABC-type sugar transport system, permease component [General function prediction only].	6.37858e-127
NZ_CP013433.1\|WP_059476060.1\|3783856_3785611_-\|AMP-binding-protein	gnl\|CDD\|236359	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD.	0
NZ_CP013433.1\|WP_069264223.1\|3782921_3783827_-\|DUF1571-domain-containing-protein	gnl\|CDD\|377879	pfam07608, DUF1571, Protein of unknown function (DUF1571). A family of paralogous proteins in Rhodopirellula baltica.	1.95936e-77
NZ_CP013433.1\|WP_045579475.1\|3788405_3788948_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.64694e-33
NZ_CP013433.1\|WP_011884635.1\|3780939_3781644_+\|DUF2968-domain-containing-protein	gnl\|CDD\|378583	pfam11180, DUF2968, Protein of unknown function (DUF2968). This family of proteins has no known function.	8.77535e-63
NZ_CP013433.1\|WP_069264221.1\|3779493_3780885_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	7.8276e-102
NZ_CP013433.1\|WP_059463903.1\|3776174_3777017_+\|pilus-assembly-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	4.47575e-19
NZ_CP013433.1\|WP_011884651.1\|3789724_3791443_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.25089e-115

>NZ_CP013433.1|WP_059476060.1|3783856_3785611_-|AMP-binding-protein
MSAPAATATAQLPPATDGIWYKSYPRGVPHEIDVAQYTSLVQFFDECTTRFAERVAYVSAGASMTYRTLAQKVDAFASYLQSIGVKPGDRVAIMLPNTFQYPVALFGTLKAGAIVVNVNPLYTARELAHQLKDSGAQTIVVFENFARTLQDALPDTQVKNIVVTALGDLLADGLNAKGHLINFVLKHVKKLVPPYNLPQAVRLRAALALGARTKPQPARVTRDDLAFLQYTGGTTGVAKGAMLTHGNLIANLLQAKAWIADQVSGDVETVLTPLPLYHIYSLTVNAFIFMGLGGRNILIANPRDMTMVMKIIRNETFTGITGINTLYNAFLDNEEFRKRDFSKLKLAMAGGMAMQRAVAERFEEVTGRPVVEGYGLTECSPIVTMNPVDLSDMAAFSGSVGLPAPSTQVRFRREDGTWAGIGEPGELCVRGPQVMRGYWQRPDETAKVLDADGWLGTGDIGVMDEHGFIRLIDRKKDMILVSGFNVYPNEIEEVLVMHPGISEAAAIGIPDEVHGERIKVFVVRRDPALTVDDVLAHCRKNLTGYKMPKSVEFRDALPQTNVGKILRRALRDEELAKLDAAKQR
>NZ_CP013433.1|WP_069264223.1|3782921_3783827_-|DUF1571-domain-containing-protein
MNPRTMRHAAHAAAAVACMLTLAPPHAQETAAARAPAATTLPAELDKVTHEPAAQQARWLCAAAQRGTLAQLDDATLTALFNALDPLAVPLYVGHGPNGYPSYQFTMARQERINGKWPDTPDRMLVKTTREPLRVYAKWLPGGTHAGQETIYDTTLRKDEMYGHLGGLLGKIPLWTALDGALARAQSNHQVKDLGTEFIANLYLSEARKYQEAGVQRPTHVEAKTIGGVRVVALTYETPTGRPQFYAKKEVLGLDLHAPYFRTVESYDNDGRIFERIVIETIAPATLDASAFDPKNPDYAF
>NZ_CP013433.1|WP_041493957.1|3782609_3782891_+|PXPV-repeat-protein
MNKRGLAVWIGGAALVASGSAMAGHVDLSVGIGVPVAPVYVEPAPVYVAPQPAVVAYPGYGYGYYGDDDDDGYRKWRKHYYKHWRKHHDDDDD
>NZ_CP013433.1|WP_011884637.1|3781727_3782315_-|RNA-chaperone-Hfq
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGGPRGPRPGGRPGGREGGGHSPYGSHGGSRESRGDGGYGSREPREGYGSREPREGYGSREPREGYGAPREPREGYGAPRESYGAPRDTSDAPGSSAPSDSRGGTGPVIVTRRRRIVPDGQ
>NZ_CP013433.1|WP_011884635.1|3780939_3781644_+|DUF2968-domain-containing-protein
MSHITGLGRACVLFAMMGGMQGVYAQGLAADAASAVQQASAPVAAIPALDPQVQSVQPQAGETTGQSTVDELQRQMQAHALTEMRTNYNGSYGASLLFNVKDGAYFVALFQQKAFWRVIKTHDDARAEAIYRDFSHQAARLAVNELRAAKLEAQKAQTDRQIQATQDRARRLQADLSIAHEQQAAVADHQKNVRDETAALQTQQAQLQGQLRALQKQVRALQREANAGLPSTAH
>NZ_CP013433.1|WP_069264221.1|3779493_3780885_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MRNTPAIAELDLYVWEGKADIVDRVARCMASFDVEVIRADNAEISPERAALRPSLAIISVTMIETGAAFLRDWQANIGMPVVWVGAARDHDASQYPPDYSHILPLDFTCAELRGMVGKLVTQLRAHAAETLQPSELVAHSESMQALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYRHGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRVGATTPIKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGAVDKIALFKSFVADVVGEARLAELSDLPYWLADAVADSYFPGNVRELRNLAERVGVTVRQTGGWDAARLQRLIAQARNSAQPVPAESAAEVFVDRSKWDMNERSRVIAALDANGWRRQDTAQQLGISRKVLWEKMRKYQIFDEEPETRESD
>NZ_CP013433.1|WP_059463911.1|3777461_3779384_+|hypothetical-protein
MAAIWLSVAVIVLSGIDIGRFYSERRHMQAAADLAALSSVMKASADSTCTAAKTAAQQVANPTANAVPSNATLSVTCGVWTAPQSSSGSALFTPTAGDPTAGQCGGLQAGTANGQSANAVCVTVSEPVIGFFRSGTTISASAIAKSTPTDTFTLSSSLASLNGGLANQLLQLLTGSPNALTLNAVDYQGLAQVNLKLAGILANLPVGSSTSVLNGTVTLGQLANAMIQAATQQNVASVKLNVLNAITAGLCSAGACGGPTIALNQLVSVATATGSSAVDASVNAFGLLSTALQVANGTNALSIPSIMVQTPTALAPLLNATVTGSVALTGMPPSTASGPPGPSNCGTSDCVTNTSTAQGNVFLNMSISLLSTCSNGSLVFPGGTCPSGKATPLAAVQLPVTAYVAPATAGLASVTCSANGTKSATVNVQTGLLAVYLGGSANTPINLKAPSGYTASGSATPITLVSVNLQSLLNLLNLGGLISGLTTLVDVLTLGALDLTEISVNINLTPGQLTIPVANQSPTPLVFTYPGTPSSPYTLSAGTDQLLSPTVQSALNSGLSVQLTANGGLLKLLGDVTTPILNVVLGPLLSALGSTLVPMLLQPVDSLLTSVTGLLGLSLGNAYVTNTPDSIKCGNPMLVQ
>NZ_CP013433.1|WP_011884628.1|3777037_3777367_+|DUF3613-domain-containing-protein
MNNNRHRNMWSGRHAALAAIACITLGPVGAHAQQQDAAPDASVVGRSTRDWLTLQAQNRAAAPTQPLLGDVASLVYQRYLDSFKNKIPESMSTQLGASGGMSGSGQGAQ
>NZ_CP013433.1|WP_059463903.1|3776174_3777017_+|pilus-assembly-protein
MKRIGRMAKQAGMATMALMLVACATKESGYGVGAQTERAALIQAADQKQAVPDTPGMYLGLIQRMQTQGLYYASLAHIDAYDKTYGVSPDTILLRADALRMTDQPAASAAAYAQLLKTPLAARGYRGLGLIAGAAGDFGRAVEALTQAADLAPTDASLLSDLAYAKLRNGDVVGARVPLMKAAELDQRNPKIVSNLALYLLAAGRTQDAQRLMNQQRMPAGIRKDISSDAAKIAAAARAQQRAVATPPVVSRRAATAPITPMANNVGYDQTVPLLQRFAQ
>NZ_CP013433.1|WP_011884625.1|3775163_3776156_+|type-II-secretion-system-F-family-protein
MTAAQIGSIALALGALGVLLLGMAALLRASAASRAERALADALERRMAALEAARTRTAPDDGAGTQQVARGRERIERMLSRLAAAGMRLLDTGFGKHIVAEEDRRLLEQCGYVDARTRGLFLSARLVCGITVPLLFAILASGRMKGGYWTIGMFAAFSVGFMLPKLYVQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAMLRDRIGRLTVKMTGVMVVTLLPALLIVTAGPGLLAVMRALAVHH
>NZ_CP013433.1|WP_011884645.1|3785881_3786700_-|TetR-family-transcriptional-regulator
MAVTQEGRPSTGRPSGTRPSGTRQSGGTKVRILDAAEDLFIEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAMLSRRLDQLNQERLGILDRFDAQLGTHITCEHVLGAMFIPALKASRDPERGGPAFLRLIGRAYTDPSPFVRNFLTAHYASVAGRFFDAFQRALPHLPRTELGWRLHFAIGALSGALAGAETESLIDEFSQRRTMNDVQMIARLSSLIVAALKAPMPDSAQLAIFAAVLDDAGASEALGMPSAAAAVDTAAAHSAG
>NZ_CP013433.1|WP_014722954.1|3786916_3788137_-|MFS-transporter
MSWTREQRNVTIAAYLGWTLDAFDFFLMVFVLKDIAAEFATTIPAVAFALTLTLAMRPLGALIFGRLADRFGRRPTLMVNIACYSLLELASGFAPSLTALLALRALFGVAMGGEWGVGSALTMETVPTHARGIVSGLLQAGYPSGYLLASVVFGLFYQYIGWRGMFMVGVLPALLVLYVRAHVPESPAWKQMEKRTRPSLAATFRHNWKLAIYAIVLMTAFNFFSHGTQDLYPTFLREQHHFDPHTVSWITIVLNLGAIVGGLSFGAISERIGRRRAIFIAALIALPVLPLWAFSSGPLALAAGAFLMQISVQGAWGVIPVHLNEISPDEIRATFPGFVYQLGNLLASGNATMQASLAVSHGNDYAFALALVAGIVAVAIAVLILFSRERRGIDMTQSVNTRTGAG
>NZ_CP013433.1|WP_045579475.1|3788405_3788948_+|GNAT-family-N-acetyltransferase
MAESPDPALPVLQTERLWLRPRVLADLDACIEMDRDREVTRYIAGPWHDPAEHRRFVTHRITRDYPAGLGYWSIFEKAAPDRFIGWVLLIPDYAGGARDVEIGWRLVRTAWGRGIASEAAAAVVRHAFDTVRLPRVIADIAAANTGSLNVAHKLGMRRVGVVDDGISYVRHRLERDDLRT
>NZ_CP013433.1|WP_011884649.1|3789059_3789686_+|chromosome-partitioning-protein-ParB
MALGNDVHLIPVRLDALRPTQMTVGYREVKAKRKHWKTLGKRARQAAIESHWFPAVLGPGGLHYITDHHHLGLALIEEGETRVNAMLLKDLSWLDDTIFWRIMEHNQWVHPFGPDGARREYAHLPQALTGLEDDPYRSLAGELRTAGGYAKDATPFSEFLWADYLRQHVSLDQIRKNFDKALDLSLRRAHDQDARYLPGWSGVIAVKP
>NZ_CP013433.1|WP_011884651.1|3789724_3791443_+|SulP-family-inorganic-anion-transporter
MTTTQTRPEAGPQRAEHFAALDAAAPSPPRRVGLDALAGLSIAGLLIPEAVAYAGLANLPPQAGLIALLSGLVIYALTGSSRFAIVSSTSSSAAVLAATVLSESGLALAAQLALAAALVTVTGVLFILSGAARLGGMSDFVARPVLRGFTFGLALTIVIKQLPKILAVSVRHGDAPHVVLELVRGAPQANLASVALGAAALALLFALGRRSRVPATLVVIVLSIVAGYLVDWQRYGIAVVGHIDFRHIEFGLPRLDRNAWMQTVELAFALMLILYAESYGSIRNFALKHGDSVSANRDLVAIGCANLVSGLLHGMPVGAGYSATAANEAAGAQSRFAGLWAAAVVALIVGLLLPQLARTPEPVLAAIVIFAVSHSLHPSIFRPYWVWHRDRLVVIAALLAVLVLGVLHGLLVAIGVNLLLTLRKLSEPNVSVLGRLRDGHDFVDVANHADAKPVPGVLIVRPEAQLFFANADRMLNRVRALMKDAPDAHTVMLSLEETPDVDGTTIESLRTFAAECAARGLRLAIVRLKAHALNALRRAADDTLRDDAMSELSVDESLQLLQARGRDGASGG
>NZ_CP013433.1|WP_011884652.1|3791732_3792677_-|ABC-transporter-substrate-binding-protein
MFKHQAALTAVACALAFGTAAAHAADKPLKSIGVTVGSLGNPYFVTIVKGAEARAKQINPNAKVTAVSADYDLNKQFTQIDNFISAHVDMILLNATDPKAIEPAVKKAQAAGITVVAVDVAAAGANATVQTNNVKAGELACDYLAKKLNGKGNVIIENGPQVSAVIDRVNGCKAVLAKNPGIKLLSSDQDGKGSREGGMNAMQGYLTRFPKLDGVFTINDPQAIGSDLAAKQLNRPNIVITSVDGAPDIEVALKSNTLVQASSSQDPWAMAQQAVNVGYGIMNGQKPANPMILIEPTLVTRDNVKGYKGWTSPR
>NZ_CP013433.1|WP_059454401.1|3792759_3793797_-|hypothetical-protein
MINQPKQRNLASAAAQPVATRTPLLRGADHRARMQSLLRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAASAVAALLASTIPGWGWLGVPIALAVGLAFGAINGGLISFLRLPPFIVTLGAMTAVRGVARLIGNDTTIFNPQLPFAFIGNGTLLGVPWLVVIACAVIALSWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQLFVYAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
>NZ_CP013433.1|WP_069264225.1|3793835_3795389_-|sugar-ABC-transporter-ATP-binding-protein
MSRSESPRPLLEMRGISKTFPAVRALDNVSLTVYPGEIHSLMGENGAGKSTLMKILSGAYRADAGGEILIDGQRIDVDGPLAARDAGVAVIYQELCLAPNLTVAENIYVGRELRRGNRRWGTIDRAAMARGCQDVLARLGAPFGPDTLVGTLSIAEQQLVEIARAVHTRARILVMDEPTTPLSSRETEHLFGLIRQLRGEGLAIIYISHRMAEIYELSDRVSVLRDGTYVGTLERAALSADRLVAMMVGRDISGFYKKEHAPYDPGHLLLSVRDIADDERVRGCSLDLHAGEVLGIAGLVGAGRTELARLIFGAEPRTRGEVKLGERTFGAHSPRDAIDAGLVYLTEDRKRQGLFLDMSVRDNINISVCNRDARLGTLDLARGAERARDAIASLSIRVPHANVNVGALSGGNQQKVLLSRLLETKPRVLILDEPTRGVDIGAKSEIYRIINELARAGVGVIVISSELPEIIGVADRVLVMREGEIAGELGGHTHTPITQEAIIALATGSQAELADAH
>NZ_CP013433.1|WP_045579474.1|3795375_3796623_-|ROK-family-protein
MRSPHIGQGSNSANVRRYNERLLLKTLRRAGSASKADLARLANMTGTAVGSIIASLADAKLIEFAGRTEGQRGQPASLIRLDPRGAFGIGVHLDRMRIETALVNFAGDVLGRRSHDTLLPPPAEVIEIVRHDIDAMQALLPAHERARLAGIGVAQPYNLGAWMRELGLAPDTFRAWEDVDFASDLGRTVSLPVFGENDGNAAAIAELFYGYGRQCDDFVYLFIGPAIGGGIAIDGDCLRGVTGNAGDIAVIPVLPSRLASAPPPRGPWDILLARASLHALVRHLRHHGETVESRADLEACIARGLPAVTEWIDDCVDALAPALRAVLCVVDAPVVVLDADTDAGLLDALTSRLRAALVATAPEARGTPTLVRGTFGADAGAIGAATLPMYFNFSPRAGILRGARIESQEVNHVAI
>NZ_CP013433.1|WP_011884656.1|3797895_3800379_+|ribonuclease-R
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKVRPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGFRLIVAIADVSHYVQPGNGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKALFAARQKRGAIDFDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHAGLYRVHAGPTPEKLENLRAFLRGMGLTLGGGEKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKAPEGFELNTALSPRARAMQQADDETRGRSRPNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVRVQVSRVDLDARKIDFRLVRDTPVKAPRPAPQAPAAGGNGNANANGSDRGGPRLRMLPAADEAAPRRKQAASAPTAAVKEARAARAAKKKGGAAAKTPAKKAHPRKKY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1079643-1079667	2	0.92
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1084323-1084347	2	0.92
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1040767-1040791	3	0.88
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	601904-601928	3	0.88
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	MT276994	Aeromonas phage AhyVDH1, complete genome	36940-36964	3	0.88
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP016458	Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence	121642-121666	4	0.84
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	445488-445512	4	0.84
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	445537-445561	4	0.84
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	445586-445610	4	0.84
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258746-1258770	5	0.8
NZ_CP013433_2	2.1\|3785681\|25\|NZ_CP013433\|CRISPRCasFinder	3785681-3785705	25	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263415-1263439	5	0.8

1. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 2, identity: 0.92

gcgagagttggcgcttcagcgcttg	CRISPR spacer
accagagttggcgcttcagcgcttg	Protospacer
.* **********************

2. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 2, identity: 0.92

gcgagagttggcgcttcagcgcttg	CRISPR spacer
accagagttggcgcttcagcgcttg	Protospacer
.* **********************

3. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 3, identity: 0.88

gcgagagttggcgcttcagcgcttg	CRISPR spacer
gcctgagttggcgcttcagcgctta	Protospacer
**  ********************.

4. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 3, identity: 0.88

gcgagagttggcgcttcagcgcttg	CRISPR spacer
gcctgagttggcgcttcagcgctta	Protospacer
**  ********************.

5. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to MT276994 (Aeromonas phage AhyVDH1, complete genome) position: , mismatch: 3, identity: 0.88

gcgagagttggcgcttcagcgcttg	CRISPR spacer
gggagagttggcgattcagctcttg	Protospacer
* *********** ****** ****

6. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP016458 (Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagagttggcgcttcagcgcttg	CRISPR spacer
cggagtgttggcgcttcagcgcctg	Protospacer
  *** ****************.**

7. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagagttggcgcttcagcgcttg	CRISPR spacer
acgagagttagcgctttagcgctta	Protospacer
.********.******.*******.

8. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagagttggcgcttcagcgcttg	CRISPR spacer
acgagagttagcgctttagcgctta	Protospacer
.********.******.*******.

9. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagagttggcgcttcagcgcttg	CRISPR spacer
acgagagttagcgctttagcgctta	Protospacer
.********.******.*******.

10. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 5, identity: 0.8

gcgagagttggcgcttcagcgcttg	CRISPR spacer
atcggagttggcgcttcagcgctta	Protospacer
.. .********************.

11. spacer 2.1|3785681|25|NZ_CP013433|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 5, identity: 0.8

gcgagagttggcgcttcagcgcttg	CRISPR spacer
atcggagttggcgcttcagcgctta	Protospacer
.. .********************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

351408 : 403013

uncultured_Mediterranean_phage(22.22%)

integrase,protease,transposase

attL 369396:369412|attR 411958:411974

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034194003.1\|351408_352122_+\|transposase	transposase	NA	NA	NA	NA
WP_011883035.1\|352413_357117_+	glutamate synthase subunit alpha	NA	NA	NA	NA
WP_014722301.1\|357202_358669_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_014722302.1\|358944_359187_+	hypothetical protein	NA	NA	NA	NA
WP_014722303.1\|359183_359738_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_069263220.1\|359850_361617_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_045578585.1\|362243_363395_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011883040.1\|363427_363625_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_011883041.1\|363663_364479_+	thiazole synthase	NA	NA	NA	NA
WP_069263222.1\|364475_365600_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_011883043.1\|365684_366506_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-21	28.9
WP_011883044.1\|366502_367270_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_059463947.1\|367294_367855_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_011883046.1\|367887_368835_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_011883047.1\|368959_369589_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
369396:369412	attL	NA	NA	NA	NA
WP_034193997.1\|369585_369861_+	STAS domain-containing protein	NA	NA	NA	NA
WP_069263224.1\|370052_370979_+	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	2.6e-21	32.4
WP_011883050.1\|370975_371731_+	ABC transporter permease	NA	NA	NA	NA
WP_059460389.1\|371782_372022_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_059560217.1\|372035_373385_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_011883052.1\|373381_374035_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_011883053.1\|374059_375376_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_011883054.1\|375495_376569_+	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_006765368.1\|376631_377219_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_011883055.1\|377281_377902_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_011883056.1\|377898_378540_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_011883057.1\|378703_379459_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_011883058.1\|379565_380339_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_011883059.1\|380338_380755_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_011883060.1\|380751_381117_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_011883061.1\|381198_381591_+	membrane protein	NA	NA	NA	NA
WP_011546602.1\|381619_381985_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_006751795.1\|382079_382310_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_014722313.1\|382336_382870_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_011883064.1\|382911_383694_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.1e-27	29.9
WP_011883065.1\|383839_385048_-	Do family serine endopeptidase	A0A1B1IRD3	uncultured_Mediterranean_phage	1.2e-10	33.6
WP_011883066.1\|385069_385816_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_011883067.1\|386035_386656_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_059475053.1\|386655_388038_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_011883069.1\|388059_388818_+	cytochrome c1	NA	NA	NA	NA
WP_006400565.1\|388912_389524_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_014722317.1\|389595_390102_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.1e-21	52.0
WP_069263226.1\|390393_391596_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.6e-106	49.9
WP_155772554.1\|391612_392458_+	hypothetical protein	NA	NA	NA	NA
WP_172820409.1\|392393_393674_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_172820410.1\|393900_395439_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_069263233.1\|395545_395836_-	hypothetical protein	NA	NA	NA	NA
WP_081333169.1\|395883_396156_-	hypothetical protein	NA	NA	NA	NA
WP_085954470.1\|396316_397134_-\|transposase	IS5-like element ISBcen20 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.1e-07	35.0
WP_069263237.1\|397517_397913_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_172820411.1\|397888_398245_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_106919311.1\|399354_400591_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_069263239.1\|401196_401448_-	hypothetical protein	NA	NA	NA	NA
WP_155121928.1\|401926_403013_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.2e-42	35.2
411958:411974	attR	NA	NA	NA	NA

DBSCAN-SWA_2

417132 : 455665

uncultured_Caudovirales_phage(25.0%)

capsid,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069263258.1\|417132_418050_-\|capsid	phage capsid protein	NA	NA	NA	NA
WP_069263259.1\|418100_419096_-	YqaJ viral recombinase family protein	A6XMH8	Bacillus_virus	1.6e-53	40.8
WP_069264797.1\|419169_420135_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.3e-58	42.5
WP_172820451.1\|420229_420562_-	hypothetical protein	NA	NA	NA	NA
WP_081333171.1\|421084_421540_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_172820413.1\|421860_422484_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_155772557.1\|422483_423194_+	hypothetical protein	NA	NA	NA	NA
WP_081333254.1\|423874_424027_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_081333173.1\|424036_424450_+	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	2.9e-36	53.2
WP_069263264.1\|424436_425630_+	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	1.4e-27	27.8
WP_069263265.1\|425806_428125_+	ATP-binding protein	NA	NA	NA	NA
WP_069263266.1\|428126_429800_+	DEAD/DEAH box helicase family protein	A0A1B0YC45	Lactobacillus_phage	1.2e-27	26.1
WP_069263268.1\|429796_430324_+	hypothetical protein	NA	NA	NA	NA
WP_069263270.1\|430345_431470_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_069264798.1\|431698_432466_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_155772558.1\|432818_433187_-	hypothetical protein	NA	NA	NA	NA
WP_148278539.1\|433238_433520_-	hypothetical protein	NA	NA	NA	NA
WP_011883093.1\|433841_434642_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_131753411.1\|434667_434964_-	hypothetical protein	NA	NA	NA	NA
WP_069263271.1\|434956_438136_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.9e-59	26.9
WP_069263272.1\|438186_442839_+	RHS domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.6e-45	48.4
WP_011883097.1\|442838_443168_+	hypothetical protein	NA	NA	NA	NA
WP_081333174.1\|443422_444691_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.5e-40	43.9
WP_059622951.1\|445230_445548_+	hypothetical protein	NA	NA	NA	NA
WP_011883100.1\|445640_446423_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011883101.1\|446419_447766_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_172820452.1\|447868_448468_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011883103.1\|448854_449490_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011883104.1\|449544_450060_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011883105.1\|450075_451566_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011883106.1\|451636_452140_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011883107.1\|452202_452688_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_014722341.1\|452765_454601_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059560417.1\|454564_455665_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_3

744675 : 753820

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883357.1\|744675_746628_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	7.0e-149	50.1
WP_011883359.1\|746884_748021_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.2e-22	27.2
WP_069263323.1\|748025_750053_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	2.6e-53	35.1
WP_014722488.1\|750144_750960_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.7e-35	32.5
WP_014722489.1\|751007_751694_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	3.6e-07	29.5
WP_069263325.1\|751690_752233_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_011883369.1\|752266_753820_-	polynucleotide adenylyltransferase PcnB	A0A1B0V011	Roseobacter_phage	1.7e-17	27.6

DBSCAN-SWA_4

953660 : 979329

Paenibacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106919311.1\|953660_954898_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_069263383.1\|954910_956242_-	hypothetical protein	NA	NA	NA	NA
WP_069264809.1\|956238_959055_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.4e-62	27.1
WP_155772561.1\|959722_960539_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.1e-07	35.0
WP_051392257.1\|960737_961199_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081333181.1\|961195_961744_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_155772562.1\|961772_962978_+	hypothetical protein	NA	NA	NA	NA
WP_069263386.1\|962961_963444_+	hypothetical protein	NA	NA	NA	NA
WP_069263388.1\|963445_964750_+	hypothetical protein	NA	NA	NA	NA
WP_085954470.1\|964688_965506_-\|transposase	IS5-like element ISBcen20 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.1e-07	35.0
WP_172820418.1\|965700_966375_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_069264812.1\|966549_968295_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_081333184.1\|968790_969093_+	H-NS histone family protein	NA	NA	NA	NA
WP_069263391.1\|970176_971376_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_060040214.1\|971372_971969_+	7-cyano-7-deazaguanine synthase	NA	NA	NA	NA
WP_155772563.1\|971955_972618_+	hypothetical protein	NA	NA	NA	NA
WP_155772564.1\|973740_973884_-	hypothetical protein	NA	NA	NA	NA
WP_085954470.1\|974429_975246_+\|transposase	IS5-like element ISBcen20 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.1e-07	35.0
WP_081333185.1\|975735_977988_+	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	NA	NA	NA
WP_155772565.1\|978095_979329_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	1.7e-103	64.2

DBSCAN-SWA_5

2619715 : 2676569

Bacillus_virus(16.67%)

integrase,holin,transposase

attL 2657834:2657850|attR 2685830:2685846

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069263861.1\|2619715_2620663_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011880823.1\|2620783_2621779_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011880824.1\|2621892_2622789_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_072465484.1\|2622781_2623879_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-27	33.8
WP_060042474.1\|2624549_2627963_+	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_069263863.1\|2627959_2629318_+	DUF3999 domain-containing protein	NA	NA	NA	NA
WP_011880828.1\|2629433_2629739_+	NIPSNAP family protein	NA	NA	NA	NA
WP_014724011.1\|2630027_2630678_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_006749916.1\|2630888_2631107_+	hypothetical protein	NA	NA	NA	NA
WP_014724012.1\|2631199_2632102_+	hypothetical protein	NA	NA	NA	NA
WP_155772653.1\|2633231_2642021_+	YadA-like family protein	NA	NA	NA	NA
WP_069263867.1\|2642115_2642796_+	OmpA family protein	NA	NA	NA	NA
WP_059561449.1\|2643106_2644252_+	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_034195520.1\|2644266_2645421_+	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_059462763.1\|2645446_2645914_+	DUF4019 domain-containing protein	NA	NA	NA	NA
WP_011880838.1\|2645935_2647072_+	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_046427460.1\|2647106_2649071_+	FkbM family methyltransferase	A0A291AUV0	Sinorhizobium_phage	2.4e-08	28.2
WP_011880840.1\|2649117_2649549_-	hypothetical protein	NA	NA	NA	NA
WP_011880841.1\|2649610_2650414_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011880842.1\|2651155_2652298_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_059462761.1\|2652567_2654568_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_046427440.1\|2654604_2655390_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_034195527.1\|2655409_2657017_-	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	2.7e-21	56.3
WP_011880846.1\|2657048_2658230_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
2657834:2657850	attL	NA	NA	NA	NA
WP_080938586.1\|2658400_2659147_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011880848.1\|2659217_2659706_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041494232.1\|2659902_2660982_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_011880850.1\|2660978_2661944_+	oxidoreductase	NA	NA	NA	NA
WP_069263869.1\|2662171_2664367_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	6.7e-07	30.8
WP_060092691.1\|2664395_2666318_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_034195533.1\|2666838_2667573_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_059669192.1\|2667626_2668238_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_106919311.1\|2668714_2669951_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_081333200.1\|2669948_2671304_-	kelch repeat-containing protein	NA	NA	NA	NA
WP_011880242.1\|2672481_2673987_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_069263164.1\|2674563_2675595_-\|integrase	site-specific integrase	A0A2R2ZGC4	Ralstonia_phage	9.2e-07	22.1
WP_069263160.1\|2675591_2676569_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2685830:2685846	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3056754 : 3063317

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059606890.1\|3056754_3057816_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.1e-87	47.3
WP_059606888.1\|3057827_3058721_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.6e-95	57.7
WP_059606886.1\|3058705_3059257_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.5e-51	54.7
WP_059739335.1\|3059249_3060149_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.2e-24	33.5
WP_059606882.1\|3060281_3061697_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.2e-57	30.8
WP_059606880.1\|3061698_3062517_+	ABC transporter permease	NA	NA	NA	NA
WP_059606904.1\|3062522_3063317_+	ABC transporter ATP-binding protein	Q66093	Chlorella_virus	4.6e-06	26.3

DBSCAN-SWA_7

3256944 : 3265401

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883830.1\|3256944_3258345_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.5e-76	37.9
WP_011883831.1\|3258352_3259303_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	2.6e-16	28.5
WP_059668160.1\|3259366_3260359_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	5.9e-27	30.9
WP_059462873.1\|3260432_3260780_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_046425224.1\|3260985_3261888_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	6.3e-52	39.5
WP_059462874.1\|3261987_3263211_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_011883840.1\|3263381_3264305_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	1.3e-41	35.2
WP_155624667.1\|3264429_3265401_-	alpha/beta fold hydrolase	A7XCB7	Tanapox_virus	1.1e-22	28.1

DBSCAN-SWA_8

3528826 : 3536538

Burkholderia_virus(42.86%)

integrase

attL 3528205:3528221|attR 3535495:3535511

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3528205:3528221	attL	NA	NA	NA	NA
WP_069264084.1\|3528826_3529912_-\|integrase	tyrosine-type recombinase/integrase	Q8W6R7	Burkholderia_virus	3.7e-184	84.7
WP_069264086.1\|3529911_3530142_-	DUF4224 domain-containing protein	Q6JIJ7	Burkholderia_virus	3.5e-15	51.3
WP_069264088.1\|3530138_3530828_-	hypothetical protein	Q5QF30	Pseudomonas_virus	4.8e-36	44.1
WP_069264090.1\|3530824_3531196_-	hypothetical protein	NA	NA	NA	NA
WP_069264092.1\|3531192_3531543_-	hypothetical protein	NA	NA	NA	NA
WP_069264094.1\|3531539_3532154_-	hypothetical protein	A0A0U1UNM2	Pseudomonas_phage	4.6e-22	56.0
WP_081333264.1\|3532164_3533226_-	RNA-directed DNA polymerase	H7BVN7	unidentified_phage	7.4e-44	34.9
WP_069264096.1\|3533485_3533863_-	four helix bundle protein	NA	NA	NA	NA
WP_069264098.1\|3533877_3534342_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_069264100.1\|3534372_3534726_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_069264102.1\|3534752_3535115_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_069264104.1\|3535302_3536160_-	DUF2303 family protein	R9TSA8	Rhizobium_phage	2.9e-22	31.3
3535495:3535511	attR	NA	NA	NA	NA
WP_059568110.1\|3536193_3536538_-	hypothetical protein	C5IHK2	Burkholderia_virus	1.1e-09	38.4

DBSCAN-SWA_9

3547038 : 3555283

Vibrio_phage(33.33%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069264144.1\|3547038_3548274_+\|terminase	PBSX family phage terminase large subunit	L7TKU1	Rhizobium_phage	2.3e-121	49.8
WP_069264146.1\|3548282_3550391_+	hypothetical protein	F8TUN9	EBPR_podovirus	3.8e-92	34.6
WP_069264149.1\|3550392_3550698_+	hypothetical protein	NA	NA	NA	NA
WP_069264150.1\|3550805_3551537_+	hypothetical protein	A8HNY6	Thalassomonas_phage	5.5e-06	36.0
WP_069264153.1\|3551545_3552754_+	hypothetical protein	A0A2I7RHI0	Vibrio_phage	3.0e-49	35.4
WP_069264155.1\|3552816_3553146_+	hypothetical protein	NA	NA	NA	NA
WP_069264158.1\|3553142_3553859_+	hypothetical protein	I3PUX2	Vibrio_phage	1.8e-17	30.6
WP_081333220.1\|3553858_3555283_+	hypothetical protein	A0A0E3JSB2	Rhodoferax_phage	2.2e-99	41.6

DBSCAN-SWA_10

3821306 : 3874407

Burkholderia_phage(62.26%)

tail,capsid,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069264234.1\|3821306_3821948_-	hypothetical protein	O03965	Myxococcus_phage	4.1e-29	37.7
WP_069264236.1\|3821944_3822142_-	hypothetical protein	NA	NA	NA	NA
WP_069264238.1\|3822138_3823188_-	phage Gp37/Gp68 family protein	Q8W6R4	Burkholderia_virus	1.0e-101	56.9
WP_081333224.1\|3823186_3823846_+	HNH endonuclease	A0A218KCC2	Bacillus_phage	1.3e-14	46.4
WP_155772607.1\|3823923_3824508_+	hypothetical protein	NA	NA	NA	NA
WP_069264246.1\|3824898_3825135_-	hypothetical protein	A9YWV8	Burkholderia_phage	2.9e-33	87.2
WP_069264248.1\|3825131_3825689_-	hypothetical protein	NA	NA	NA	NA
WP_155772608.1\|3825828_3826029_-	hypothetical protein	NA	NA	NA	NA
WP_069264250.1\|3826022_3826268_-	hypothetical protein	NA	NA	NA	NA
WP_155772609.1\|3826264_3827437_-	hypothetical protein	A6N3G8	Burkholderia_virus	1.0e-06	72.2
WP_069264254.1\|3827597_3829586_-	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.9e-165	57.2
WP_059701376.1\|3829752_3830088_+	hypothetical protein	NA	NA	NA	NA
WP_069264256.1\|3830257_3830878_+	hypothetical protein	NA	NA	NA	NA
WP_069264257.1\|3830991_3831615_-	1-pyrroline-5-carboxylate dehydrogenase	A9YX18	Burkholderia_phage	1.1e-20	94.4
WP_069264259.1\|3831611_3833378_-	AAA family ATPase	J7HXJ7	Pseudomonas_phage	3.4e-78	37.2
WP_069264261.1\|3833374_3834259_-	cell division protein FtsK	J7I0T4	Pseudomonas_phage	1.2e-34	33.5
WP_069264894.1\|3834289_3835492_-	hypothetical protein	A0A2I7RZ22	Vibrio_phage	6.5e-20	33.7
WP_069264263.1\|3835580_3836390_-	PD-(D/E)XK nuclease family protein	J7HXJ4	Pseudomonas_phage	8.0e-91	60.2
WP_069264265.1\|3836386_3836686_-	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	1.4e-40	81.8
WP_172820432.1\|3836781_3836925_-	hypothetical protein	A9YWW4	Burkholderia_phage	3.0e-09	67.4
WP_172820433.1\|3836921_3837071_-	hypothetical protein	A9YWW5	Burkholderia_phage	1.5e-08	63.8
WP_172820434.1\|3837067_3837244_-	hypothetical protein	A9YWW6	Burkholderia_phage	2.4e-16	72.4
WP_069264267.1\|3837243_3837489_-	hypothetical protein	NA	NA	NA	NA
WP_069264269.1\|3837485_3837836_-	hypothetical protein	NA	NA	NA	NA
WP_069264271.1\|3837832_3838060_-	hypothetical protein	I6NVM7	Burkholderia_virus	1.4e-05	45.0
WP_069264273.1\|3838108_3838525_-	hypothetical protein	NA	NA	NA	NA
WP_069264275.1\|3839117_3839948_-	hypothetical protein	NA	NA	NA	NA
WP_172820435.1\|3840619_3840967_-	helix-turn-helix domain-containing protein	A9YWX7	Burkholderia_phage	7.2e-57	97.4
WP_081333229.1\|3841051_3841363_+	helix-turn-helix domain-containing protein	A9YWX8	Burkholderia_phage	1.4e-43	80.4
WP_069264278.1\|3841479_3841854_+	hypothetical protein	A9YWX9	Burkholderia_phage	5.8e-52	80.6
WP_081333230.1\|3841850_3842072_+	hypothetical protein	A9YWY0	Burkholderia_phage	2.1e-30	83.8
WP_155772610.1\|3842113_3842905_-	hypothetical protein	NA	NA	NA	NA
WP_155772611.1\|3842958_3843117_+	hypothetical protein	A9YWY3	Burkholderia_phage	2.1e-08	81.2
WP_069264280.1\|3843113_3844352_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	9.2e-171	69.8
WP_059898338.1\|3844514_3844733_+	hypothetical protein	NA	NA	NA	NA
WP_069264282.1\|3844770_3845760_+	YdaU family protein	NA	NA	NA	NA
WP_155772612.1\|3845756_3845930_+	hypothetical protein	NA	NA	NA	NA
WP_069264284.1\|3845926_3846397_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	2.0e-73	89.7
WP_069264286.1\|3846408_3846735_+	hypothetical protein	A9YWZ0	Burkholderia_phage	2.1e-42	89.7
WP_069264288.1\|3846731_3847325_+	DNA-binding protein	A9YWZ1	Burkholderia_phage	4.8e-101	93.2
WP_069224162.1\|3847432_3847876_-	hypothetical protein	NA	NA	NA	NA
WP_069264290.1\|3847981_3848647_+	hypothetical protein	A9YWZ4	Burkholderia_phage	2.4e-109	89.8
WP_069224164.1\|3848665_3849145_+	DUF2280 domain-containing protein	A9YWZ5	Burkholderia_phage	4.2e-55	75.7
WP_069264293.1\|3849095_3850649_+\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.3e-110	45.2
WP_069264297.1\|3850669_3852136_+	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	2.2e-264	94.8
WP_069264299.1\|3852132_3852888_+\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	5.5e-134	97.2
WP_155754269.1\|3853046_3853208_+	hypothetical protein	NA	NA	NA	NA
WP_069264301.1\|3853209_3854670_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	1.2e-206	88.3
WP_069264303.1\|3854679_3855186_+	hypothetical protein	NA	NA	NA	NA
WP_069264305.1\|3855255_3856347_+	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	1.1e-162	96.3
WP_011881830.1\|3856348_3856816_+	hypothetical protein	A9YX24	Burkholderia_phage	2.6e-25	85.9
WP_069264307.1\|3856878_3857262_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	5.3e-61	94.5
WP_069264309.1\|3857290_3857773_+	hypothetical protein	A9YX26	Burkholderia_phage	2.5e-71	88.1
WP_069264311.1\|3857776_3858148_+	hypothetical protein	A9YX28	Burkholderia_phage	3.2e-63	94.3
WP_069264312.1\|3858152_3858743_+	hypothetical protein	A9YX29	Burkholderia_phage	7.4e-102	93.4
WP_069264313.1\|3858752_3860228_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.0e-112	47.9
WP_059602255.1\|3860243_3860684_+	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	6.4e-42	59.6
WP_069264315.1\|3860686_3861268_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	7.2e-17	32.6
WP_069264318.1\|3861451_3863431_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A2H4J9N7	uncultured_Caudovirales_phage	1.4e-40	31.5
WP_081333231.1\|3863427_3864003_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.8e-18	35.1
WP_069264320.1\|3864002_3864320_+	hypothetical protein	NA	NA	NA	NA
WP_069264321.1\|3864316_3865285_+	hypothetical protein	A9YX04	Burkholderia_phage	4.0e-145	88.6
WP_069264322.1\|3865281_3865659_-	hypothetical protein	A9YX05	Burkholderia_phage	5.8e-60	90.4
WP_069264323.1\|3865662_3866403_+	hypothetical protein	A9YX06	Burkholderia_phage	1.5e-120	87.8
WP_069264324.1\|3866410_3866764_+	hypothetical protein	A9YX11	Burkholderia_phage	7.3e-57	95.7
WP_069264326.1\|3866760_3867942_+\|plate	baseplate J/gp47 family protein	A9YX12	Burkholderia_phage	1.1e-200	93.9
WP_069264328.1\|3867941_3868604_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	3.8e-107	85.5
WP_069264330.1\|3868667_3870080_+	hypothetical protein	A9YX14	Burkholderia_phage	2.4e-13	28.2
WP_172820436.1\|3870128_3871133_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_069264334.1\|3871206_3871605_+\|tail	phage tail assembly chaperone	A0A291LAV4	Bordetella_phage	5.4e-08	37.8
WP_059475787.1\|3871664_3871847_+	hypothetical protein	NA	NA	NA	NA
WP_069264335.1\|3871839_3872337_+	lysozyme	Q3HQU9	Burkholderia_phage	3.2e-82	90.9
WP_069264336.1\|3872333_3872882_+	hypothetical protein	NA	NA	NA	NA
WP_069264339.1\|3872878_3873358_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	8.2e-27	47.1
WP_069224189.1\|3873327_3873654_-	hypothetical protein	NA	NA	NA	NA
WP_069264899.1\|3873735_3874407_+	SOS response-associated peptidase family protein	Q8W6R8	Burkholderia_virus	2.1e-97	72.5

DBSCAN-SWA_11

4016470 : 4104786

Burkholderia_phage(35.56%)

head,holin,protease,portal,capsid,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069264399.1\|4016470_4017277_-\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_046427002.1\|4017330_4018374_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	5.1e-13	29.1
WP_069264915.1\|4018666_4019632_-	bifunctional glyoxylate/hydroxypyruvate reductase B	M1I539	Acanthocystis_turfacea_Chlorella_virus	4.4e-19	27.7
WP_011884906.1\|4019637_4020918_-	MFS transporter	NA	NA	NA	NA
WP_069264401.1\|4021081_4022083_-	sugar kinase	NA	NA	NA	NA
WP_059568172.1\|4022111_4022876_-	xylose isomerase	NA	NA	NA	NA
WP_011884909.1\|4023142_4024036_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011884910.1\|4024146_4025220_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_014723072.1\|4025287_4027069_+	ClcB-like voltage-gated chloride channel protein	NA	NA	NA	NA
WP_011884912.1\|4027238_4027859_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014723073.1\|4028049_4029159_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011884914.1\|4029155_4032305_+	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	4.2e-10	18.4
WP_069264402.1\|4032307_4033891_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_011884917.1\|4034869_4036255_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_034193156.1\|4036504_4037389_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_069264404.1\|4037431_4039099_+	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_011884920.1\|4039117_4039924_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011884921.1\|4040064_4040886_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_041493835.1\|4040882_4041812_-	ABC transporter permease subunit	Q6GZ02	Mycoplasma_phage	1.1e-06	22.0
WP_011884923.1\|4041808_4042969_-	polyamine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.6e-23	34.3
WP_011884924.1\|4043055_4044150_-	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011884925.1\|4044658_4044862_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_069264406.1\|4045081_4045723_-	OmpW family protein	NA	NA	NA	NA
WP_011884927.1\|4045788_4046979_-	nitronate monooxygenase	NA	NA	NA	NA
WP_045579084.1\|4047102_4048539_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_011884929.1\|4048798_4049164_+	hypothetical protein	NA	NA	NA	NA
WP_011884930.1\|4049195_4049660_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_069264408.1\|4049793_4050840_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_069264410.1\|4051013_4052606_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	1.2e-53	26.5
WP_069224220.1\|4052734_4054996_-	AsmA family protein	NA	NA	NA	NA
WP_011884934.1\|4055148_4055850_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	7.6e-05	25.0
WP_011884935.1\|4055846_4056650_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_014723082.1\|4056833_4057385_-	hypothetical protein	NA	NA	NA	NA
WP_069264916.1\|4057552_4058569_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_014723084.1\|4058692_4059634_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014723085.1\|4059770_4060616_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_034193170.1\|4060700_4061885_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_059462604.1\|4061994_4062537_-	hypothetical protein	NA	NA	NA	NA
WP_011884942.1\|4062598_4063525_-	sugar kinase	NA	NA	NA	NA
WP_069264411.1\|4063528_4064914_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_069264918.1\|4064928_4066557_+	recombinase family protein	Q3HQV4	Burkholderia_phage	7.0e-203	66.1
WP_155772614.1\|4066582_4067356_+	hypothetical protein	NA	NA	NA	NA
WP_069264415.1\|4067407_4068079_-	SOS response-associated peptidase family protein	Q8W6R8	Burkholderia_virus	1.6e-97	72.2
WP_172820438.1\|4068244_4068412_+	hypothetical protein	NA	NA	NA	NA
WP_059495943.1\|4068455_4069292_-	hypothetical protein	Q3HQV2	Burkholderia_phage	1.2e-49	44.1
WP_069264919.1\|4069453_4070092_-	hypothetical protein	Q775E2	Bordetella_phage	6.2e-22	41.4
WP_069264416.1\|4070091_4070574_-	hypothetical protein	Q775E1	Bordetella_phage	2.7e-46	57.0
WP_069264417.1\|4070575_4070860_-\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	8.6e-32	78.3
WP_069264418.1\|4070923_4071238_-	hypothetical protein	NA	NA	NA	NA
WP_069264420.1\|4071278_4071992_-	hypothetical protein	A4JX18	Burkholderia_virus	1.0e-49	47.1
WP_172820439.1\|4071991_4072300_-	hypothetical protein	Q3HQU6	Burkholderia_phage	1.1e-21	51.0
WP_069264424.1\|4072299_4075692_-\|tail	phage tail protein	A4JX16	Burkholderia_virus	0.0e+00	64.0
WP_069264426.1\|4075693_4076269_-\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	3.6e-69	69.2
WP_069264428.1\|4076272_4077016_-	C40 family peptidase	A4JX14	Burkholderia_virus	1.5e-107	72.1
WP_069264430.1\|4077063_4077750_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	1.7e-94	73.8
WP_155772615.1\|4077755_4078847_-	hypothetical protein	NA	NA	NA	NA
WP_034193082.1\|4078843_4079185_-\|tail	phage tail protein	C7BGC9	Burkholderia_phage	5.1e-31	58.2
WP_069264434.1\|4079185_4082029_-\|tail	phage tail tape measure protein	Q6JIL8	Burkholderia_virus	1.3e-55	34.6
WP_081333235.1\|4082021_4082462_-	HK97 gp10 family phage protein	A0A1W6JP15	Morganella_phage	1.9e-09	34.0
WP_155770210.1\|4082454_4082688_-	hypothetical protein	NA	NA	NA	NA
WP_034193080.1\|4082747_4083170_-	hypothetical protein	NA	NA	NA	NA
WP_069264436.1\|4083209_4083848_-\|tail	phage tail protein	NA	NA	NA	NA
WP_060043783.1\|4083893_4084295_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_059895682.1\|4084287_4084617_-\|head	phage head closure protein	NA	NA	NA	NA
WP_069264438.1\|4084616_4085291_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_069264439.1\|4085294_4085573_-	hypothetical protein	NA	NA	NA	NA
WP_069264441.1\|4085636_4086893_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	8.3e-103	51.8
WP_172820440.1\|4086987_4087719_-\|protease	ATP-dependent Clp protease proteolytic subunit	C7BGG9	Burkholderia_phage	1.2e-48	55.3
WP_059461708.1\|4087727_4089086_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	2.5e-68	36.4
WP_059723478.1\|4089082_4090738_-\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	1.5e-232	71.6
WP_059495983.1\|4090741_4091224_-\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	7.5e-36	60.3
WP_051974407.1\|4091337_4091598_-	HNH endonuclease	NA	NA	NA	NA
WP_069264447.1\|4091679_4092027_-	hypothetical protein	A2I2Y8	Vibrio_virus	1.3e-29	63.2
WP_059461704.1\|4092133_4092712_-	hypothetical protein	Q3HR05	Burkholderia_phage	3.1e-20	35.4
WP_059461703.1\|4092766_4093012_-	hypothetical protein	Q3HR04	Burkholderia_phage	1.1e-11	46.9
WP_155632423.1\|4093008_4093323_-	hypothetical protein	NA	NA	NA	NA
WP_155772659.1\|4093307_4093745_-	DUF1364 family protein	Q6JIF7	Burkholderia_virus	3.2e-62	80.9
WP_059461701.1\|4093777_4094032_-	hypothetical protein	NA	NA	NA	NA
WP_069264451.1\|4094028_4094385_-	DUF4406 domain-containing protein	H2BD42	Pseudomonas_phage	6.1e-27	53.8
WP_034193065.1\|4094381_4094729_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_069264453.1\|4094728_4095292_-	DUF1064 domain-containing protein	A4JX56	Burkholderia_virus	9.7e-43	55.3
WP_069264924.1\|4095288_4096281_-	helix-turn-helix domain-containing protein	Q8W6P0	Burkholderia_virus	8.3e-106	66.2
WP_034193063.1\|4096292_4097114_-	ParB N-terminal domain-containing protein	Q6JIG3	Burkholderia_virus	9.4e-71	56.6
WP_155772616.1\|4097124_4097301_-	hypothetical protein	Q3HQZ4	Burkholderia_phage	7.2e-05	39.7
WP_069264455.1\|4097297_4097987_-	phage antirepressor KilAC domain-containing protein	A0A1V1FD44	Vibrio_phage	2.0e-42	44.0
WP_034193061.1\|4097987_4098434_-	phage regulatory CII family protein	Q3HQZ3	Burkholderia_phage	5.1e-63	77.7
WP_155623504.1\|4098565_4098733_-	hypothetical protein	NA	NA	NA	NA
WP_069264459.1\|4098734_4098965_-	hypothetical protein	NA	NA	NA	NA
WP_155772617.1\|4099191_4099461_-	hypothetical protein	NA	NA	NA	NA
WP_081333236.1\|4099462_4099759_-	helix-turn-helix domain-containing protein	C7BGF8	Burkholderia_phage	3.4e-31	86.5
WP_081333267.1\|4099844_4100246_+	hypothetical protein	C7BGF7	Burkholderia_phage	1.1e-45	70.7
WP_155772618.1\|4100652_4101534_-	hypothetical protein	A0A0R6PIN1	Moraxella_phage	6.4e-25	28.4
WP_155745021.1\|4101496_4101691_-	hypothetical protein	NA	NA	NA	NA
WP_059895642.1\|4102024_4102291_+	acyl carrier protein	A0A1P8VVJ5	Erythrobacter_phage	7.6e-06	39.4
WP_069264464.1\|4103087_4103768_-	hypothetical protein	A4JX33	Burkholderia_virus	1.1e-11	62.1
WP_069264466.1\|4103800_4104514_+	hypothetical protein	O03965	Myxococcus_phage	5.5e-51	45.2
WP_069264468.1\|4104510_4104786_+	hypothetical protein	Q3HQV5	Burkholderia_phage	9.2e-23	64.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013434_1

480658-480745

Orphan

Consensus_repeat	Method
CGCATCGCCGTCGCGGGTCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013434_1

>merge|NZ_CP013434|1|480658-480745|CRISPRCasFinder
CGCATCGCCGTCGCGGGTCGGGCTTCGCGTGGTCAACGTCAGTCCCTCAGCACCATGAATTGCTCCGCATCGCCGTCGCAGGTCGGGC

>NZ_CP013434|1|1|480658-480745|CRISPRCasFinder
CGCATCGCCGTCGCGGGTCGGGC	TTCGCGTGGTCAACGTCAGTCCCTCAGCACCATGAATTGCTC
CGCATCGCCGTCGCAGGTCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013434.1\|WP_069224867.1\|476320_477496_-\|hydrogenase-maturation-protein-HypF	unknown	unknown	gnl\|CDD\|223146
NZ_CP013434.1\|WP_011880072.1\|478559_478907_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NZ_CP013434.1\|WP_045579943.1\|487859_488927_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP013434.1\|WP_011880063.1\|484191_486048_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057
NZ_CP013434.1\|WP_045579644.1\|480925_481789_-\|hydrogenase-expression/formation-protein	unknown	unknown	gnl\|CDD\|377409
NZ_CP013434.1\|WP_069224868.1\|488958_490569_+\|carbamoyltransferase	unknown	unknown	gnl\|CDD\|225103
NZ_CP013434.1\|WP_011880077.1\|473866_474943_-\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
NZ_CP013434.1\|WP_014725812.1\|482677_483355_-\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|129246
NZ_CP013434.1\|WP_059457503.1\|474939_476076_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP013434.1\|WP_011880067.1\|481806_482340_-\|hydrogenase	unknown	unknown	gnl\|CDD\|239263
NZ_CP013434.1\|WP_045579647.1\|472243_473746_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013434.1\|WP_034192889.1\|486105_487179_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP013434.1\|WP_011880080.1\|469743_471201_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|380187
NZ_CP013434.1\|WP_011880064.1\|483362_484073_-\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	unknown	unknown	gnl\|CDD\|273985
NZ_CP013434.1\|WP_045579643.1\|482336_482687_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP013434.1\|WP_011880075.1\|476072_476330_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP013434.1\|WP_011880071.1\|478894_480148_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225798
NZ_CP013434.1\|WP_045579641.1\|490849_491110_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP013434.1\|WP_011880079.1\|471209_472247_-\|NADH-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|224654
NZ_CP013434.1\|WP_059897273.1\|477492_478530_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479

Protein	Function_ID	Function_description	E-value
NZ_CP013434.1\|WP_069224867.1\|476320_477496_-\|hydrogenase-maturation-protein-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	9.25733e-77
NZ_CP013434.1\|WP_011880072.1\|478559_478907_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	3.26172e-39
NZ_CP013434.1\|WP_045579943.1\|487859_488927_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	1.12068e-126
NZ_CP013434.1\|WP_011880063.1\|484191_486048_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0
NZ_CP013434.1\|WP_045579644.1\|480925_481789_-\|hydrogenase-expression/formation-protein	gnl\|CDD\|377409	pfam04809, HupH_C, HupH hydrogenase expression protein, C-terminal conserved region. This family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown.	1.15477e-48
NZ_CP013434.1\|WP_069224868.1\|488958_490569_+\|carbamoyltransferase	gnl\|CDD\|225103	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones].	9.79781e-132
NZ_CP013434.1\|WP_011880077.1\|473866_474943_-\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	9.76796e-174
NZ_CP013434.1\|WP_014725812.1\|482677_483355_-\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|129246	TIGR00140, Hydrogenase_expression/formation_protein_HupD, hydrogenase expression/formation protein. valid names: hupD, hynC, hoxM. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease. [Protein fate, Protein modification and repair].	4.13993e-68
NZ_CP013434.1\|WP_059457503.1\|474939_476076_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP013434.1\|WP_011880067.1\|481806_482340_-\|hydrogenase	gnl\|CDD\|239263	cd02965, HyaE, HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.	1.19404e-47
NZ_CP013434.1\|WP_045579647.1\|472243_473746_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.27058e-150
NZ_CP013434.1\|WP_034192889.1\|486105_487179_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	0
NZ_CP013434.1\|WP_011880080.1\|469743_471201_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	5.6028e-128
NZ_CP013434.1\|WP_011880064.1\|483362_484073_-\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	gnl\|CDD\|273985	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.	6.27348e-76
NZ_CP013434.1\|WP_045579643.1\|482336_482687_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	7.79732e-22
NZ_CP013434.1\|WP_011880075.1\|476072_476330_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	5.78658e-32
NZ_CP013434.1\|WP_011880071.1\|478894_480148_-\|hypothetical-protein	gnl\|CDD\|225798	COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion].	8.21225e-05
NZ_CP013434.1\|WP_045579641.1\|490849_491110_+\|IS3-family-transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000220764
NZ_CP013434.1\|WP_011880079.1\|471209_472247_-\|NADH-ubiquinone-oxidoreductase	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.62496e-67
NZ_CP013434.1\|WP_059897273.1\|477492_478530_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	4.70353e-128

>NZ_CP013434.1|WP_011880071.1|478894_480148_-|hypothetical-protein
MTGVASTSEDTSGFAALAGRYVVRPGRSPSIDGGRPPLAGLLLAGQPAALAAPRLSAVFSLCGRAHALCAELAVTAAGAYANAGGAAGDCGGKGDADGNVDRNGAGDDHDASRGEGERDGEDARSATLARETIAEHLRRIWLDWPARLVGGAPCALPDVRAAGTREWIERHVLGEPADGWLARWDQDPRACLSAWTARATSFPASLLLHCRTVADALRMPPRALRIDGADRARLRRIGAAIAGDPRFAQRPEQDGAPAETGVWTRCGDPHAAAYDSAWLRLGARVAELARLAAGGPAAFALRSGALALAPGEALAWCETARGVLIHWVRLVPGDAARVADYRVASPTEWNFHPDGTLAHALARVDVRPDGGGDAGLAARVGALMGAFDPCIAYALETAAPVRRDDDHTNGNRSTCMK
>NZ_CP013434.1|WP_011880072.1|478559_478907_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEVSLAGGVLAAVEAAAARERFARVNVLRLEVGRLAGVEVDALRFALDAMAPGTCLAGARIEIAEPPGRAWCLNCHCDVPLAARGEPCGRCGGYWLQPNGGTELRIVDMLVDDA
>NZ_CP013434.1|WP_059897273.1|477492_478530_-|hydrogenase-nickel-incorporation-protein-HypB
MCVVCGCDSPDGAHRDRHDAHHAHHDAQAHVRADAASGDLHYGLGPAGVTVHGLDQGRTVRIEQDVLGENDRHAAHNRRHFAAHGVRALNLVSSPGSGKTTLLCATIAALRARAPALPIAVIEGDQQTANDAERIRAAGAPAIQVNTGKGCHLDAAMVAAAYERLPLHAHGHDHGHAHGHGHEHHHHDHDHHHPHDAHASSERRGAAQQPDSVLFIENVGNLVCPALWDLGEDAKVAILSVTEGEDKPLKYPDMFAAARLMIVNKTDLLPYVQFDVERCIEYARRINPALDVICVSATTGDGIDAWLDWVLRTGDAHDPLAARIGELEAELAALRAQQRRAGDAA
>NZ_CP013434.1|WP_069224867.1|476320_477496_-|hydrogenase-maturation-protein-HypF
MTLRRERLPRAWGADTVLATGAWLKNAACVYVDGDVYWSPLHGDLDDPRHCVALEASVASLVDAARQAGRPVRAIAHDLHPDFHSSRLAVEWSERLGVPAIAVQHHHAHIGAVAAEHGLAEPVVGLALDGVGLGTDGAAWGGELLEVAPDGWRRLGHLTPLALPGGDVAAREPWRMAAAALHTLGRADEIEARLGGDVGTRAARTIGTMLARGLNCPPSTGAGRWFDAAAGLLGICRHQRTEAEAAIALERHAADYLRDHPEPDTDGLWRIADDGELDLRPLLVRVLELADAGASAQGAALFHLALADALAAWAAAVAHGRAVLLGGGCFANRLLSARLRAALDARGVRSCAPSSVPCGDAGLALGQAWVAAHTLTSGAVRATSEGVSTCV
>NZ_CP013434.1|WP_011880075.1|476072_476330_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPARVVELRDADMGVVDLGGVRKTISLALVPDARLGEYVIVHVGYALGRIDPDEAERTLALFGELAHAAGDGDVHPSGAPQ
>NZ_CP013434.1|WP_059457503.1|474939_476076_-|hydrogenase-formation-protein-HypD
MKYIDEFRDRALAERISARIQAEAQPGTRYHFMEFCGGHTHAISRYGVTDLLPANVRMIHGPGCPVCVLPVGRIDLAVQLALERGVIVCTYGDTMRVPASGGMSLMRAKAHGADIRMVYSPLDALKIARLNPDREVVFFAIGFETTTPPTALIVRDAAAAGVDNFSVLCCHVLTPAAITHLLAAPAVAADAVPLDGFIGPAHVSIVIGSAPYEGFARDYRKPVVIAGFEPLDVMQAILMLIRQVNDGRAEVENEFSRAVTRAGNAAAQALMDDVFEARESFEWRGLGEVPASALRIRAKYARHDAEARYGLVYRPVADHRKCECGAILRGLKQPRDCSLFGTVCTPENPMGSCMVSSEGACAAHYSYGRFKDIPLVPA
>NZ_CP013434.1|WP_011880077.1|473866_474943_-|hydrogenase-expression/formation-protein-HypE
MSSTPTPRTKPAYVRPLNFRDGRIDMGHGAGGRASAQLIRELFVAAFDNEWLRQGNDQAAFAPPATAPGERVVMATDAHVVSPLFFPGGDIGSLAVHGTVNDVAMSGARPLYLAASFIIEEGFALADLKRIVESMANASRECGVPIVTGDTKVVERGKGDGVFITTTGVGVVPAGIRIDGALARPGDAVLLSGTIGEHGVAIMSTREALEFDVEISSDSAALHTLVASMLAAVPGVRVLRDPTRGGLATTLNEIASQSGVGMLIREDAIPVLPQVDAACELLGLDPLYVANEGKLVAVCAAEDAPALLAAMRAHPLGAHAVQIGEVTEDAHGFVQVETKFGGRRIADWLSGEQLPRIC
>NZ_CP013434.1|WP_045579647.1|472243_473746_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MSSPLPVHPSTDPEPDPAPLRRPPTVLVVDDELRAQETIRRVLDEEFEVLTASSADEARAILQQQPVAVILCDQRMPGRTGVEFLSEVRETWPDTVRIIVSGYTDSEDIVAGINQAGIHRFVLKPWMPDHLLHTVRQAAEAQSLQQDMHRLDLELRNSVPLLRQRSHEKLAQVQNTLGFDAIVRAPGSPLDPICKLASKLARYDLSILILGESGTGKEMLARAIHYASPRAAGPFVVENCAAVADTLLESELFGHKRGAFTGAVHDHAGLFQRANGGTIFLDEIGDTSLAFQVRLLRVLQEGEVRPVGATRAVPVDVRVIAATHRDLEREVEAGRFREDLYYRIATATLALPPLRERSGDLVPIAHRLLQAIAEHESRPAGLDFARDALAVLLGYAWPGNIRELRNEIYRAVALSDDDLIRADAFSPKVLRGQSGPAARGPEAQIASAGTLQERLDAMETMLIKEALLRHRWNKTRAASELGLSRAGLRQKMQRFGLEKK
>NZ_CP013434.1|WP_011880079.1|471209_472247_-|NADH-ubiquinone-oxidoreductase
MSVDTRAPDGTGAFNVLWLQSGGCGGCNMSLLCADTPDFSGMLSRAGIRLLWHPSLSLETGADARDVLLACLDGTVELHALCVEGAMLRGPNGTGRFHVLAGTGVPMIDWVARLASVAHYTVAIGTCAAYGGITAAGANPADACGLQYDGDQPGGLLGAAYRSRSGFPVVNVAGCPTHPDWVVETLSALSMSLLDPAALDTLGRPRFYADQLVHHGCTRNEFYEYKASAVRPSDLGCMMEHMGCKGTQAHADCNTRLWNGDGSCTRGGYACINCTEPGFEEPGHAFHRTPNVAGIPIGLPSDMPKAWFVALASLSKAATPKRVRENATADHLKVAPAVRSRPRNK
>NZ_CP013434.1|WP_011880080.1|469743_471201_-|nickel-dependent-hydrogenase-large-subunit
MSRLVIGPFNRVEGDLEVRIEVVDGRVSDAHVNATMFRGFEQILLDRDPLDALVYVPRICGICSVSQGVAAARALADLAGVTPAPNGQIATNLMLAAENLADHLSHFYLFFMPDFVRPVYAARAWHAEAVSRFTPYQGERHRASLAARQRWLRLMGTLGGKWPHTGSIQPGGSARAIDNAERIRLLGFIGEFRQFLEEVLFDAPLEEIAQLDSEAALAAWRARGERRGDLRFFLTLADDLGLDRLGAGPDLYLSYGAYPQPDGAHAFRGGVWDAQRKQADALDLDAITEDATHAWLDDAGGARHPFAGLTEPRADKPGAYTWNKAPRLNGAVLETGAIARQLADGHPLIADAVARCGGSVYTRVLARLLELARVVPMMEQWVRALAPGMPYCAAFALPDEGRAVGLNEAARGSLGHWLAVKDGRIANYQIIAPTSWNFSPRDAGGRPGALEAALIGAPVEPGETTPVAVQHIVRSFDPCMVCTVH
>NZ_CP013434.1|WP_045579644.1|480925_481789_-|hydrogenase-expression/formation-protein
MQMKTFPVPVVPFGPGSQPEGDAVLDYMPMPQAMHTFVAPSLPERADARALDVVRGILLTVLDALDACRRGEQPAPIDLTACDADALRILNAVLGEGEVSARIDTADAGSVLIQETVFAGVWRIAEDGPAGRAERIEVGGAPAALAAAAHAAAAPELPVSDTHPSGVMNAPAILTEVRDQVARWRAGAAPHVINLTLLPLSSEDGAFIDAVLGGGPVSVLSRGYGNCRIASTGVVHCWRIAYFNSQDTLILNTIEITNLPEIVQAAPEDIDDSHERLAQLIDWVEEA
>NZ_CP013434.1|WP_011880067.1|481806_482340_-|hydrogenase
MSETSGSVPGATQADAPNVPNVPNAAAAGQDCPAVVQRLIEQAHATFVDEHTLDGWLADGGECVVLLMGDPVRFPESLDVAAVLPELAHVAAVRFGRALRLAVATRAGENAIARRFGSLRWPALLWLRDGQYVTVLSGMMDWDDYVKCVADALAGPTTRAPSIGIPVNVAGGSSGCH
>NZ_CP013434.1|WP_045579643.1|482336_482687_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCIGLPMQVVEAQPGHAWCVGRGVRRRVDTALVGPCAPGDWLLVFLDAARERLDAARAAEIDATLALIESVMAGEGGAASPAAFALPSALGVDELNRLVGGPQRAAGSLAVPEESK
>NZ_CP013434.1|WP_014725812.1|482677_483355_-|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MDTSPQTIPSAQDGAAIVALGIGNVLWADEGFGVRCIEALQQRFECAPNVTLMDGGTQGLYLIQHVQAADFLLIFDAVDYGLAPGELKIVEDDEVPKFLGVRKMSLHQTGFQEVLMLAQLTGKYPRRVVLIGCQPEEIEDYGGSLRPCVKAALERALDAGVAYLREWGGAPLPRRTALRDDEAVTLHHLALARYEGERPSEADACRIGDERVLVRALAKEPPSCA
>NZ_CP013434.1|WP_011880064.1|483362_484073_-|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit
MTMQTQSRRGRAPDTVPAAKAIYVYEAPVRIWHWMNAASIAVLSITGYLIGSPLATQPGEASAHFLMGYIRFAHFAAAYLFAVGLAGRAYWALVGNHHAREMFWVPVFTRDYWLDVFGMLRYYMFLGPCPRQYSGHNPLSRFAMFFVFLTVSLFMVVTGFALYGEGAQAGSWQQRTFGWIRPLLGQSQGVHTWHHLGMWAILLFVILHVYAAIREDIMGRQSVVGSMISGYRTFKD
>NZ_CP013434.1|WP_011880063.1|484191_486048_-|nickel-dependent-hydrogenase-large-subunit
MTAYSTQGFQLDNSGRRIVVDPVTRIEGHMRVEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALASVRAVEDALDIRIPPNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVVSALKADPKLTSELQQRVSPSHPMSSPGYFRDIQTRLRKFVESGQLGPFMNGYWGNPAYLLPPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAINIDGDLAAGAPINMERLNFVRSLIDQAETFCRNVYVPDLLAIGTIYKARGWLHGGGLAATNVMDYGTYPLVNYDPSTNQMPGGAILNGDWDNILPVDARDPEQVQEFVTHSWYQYPDNDRGLHPWDGMTEPHYELGPNTKGTRTAIESVDESAKYSWVKAPRWRGHAMEVGPLARYILGYAHAKQGNPHGARIKEQIDAALQSVNQDMPKLLGLPETTLGAKQLLPTTIGRTLARALEAQYCAEMMSDDWQRLVDNIRNGDTSTANVEKWDPSTWPAEAKGVGTVAAPRGALGHWIKIKDGRIENYQCVVPSTWNGGPRDAKGQIGAFEASLMNTPMANPEQPVEILRSLHSFDPCMACSTHVMSEDGAEMTTVTVR
>NZ_CP013434.1|WP_034192889.1|486105_487179_-|hydrogenase-small-subunit
METFYEVMRRQGISRRSFLKFCSLTATSLGLGPAFMPRIVEAMETKPRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDLLMASAGHQAEAILEEVMTKYKGNYILAVEGNPPLNQDGMSCIIGGKPFVDQLRRVSKDAKAVISWGSCASWGCVQAAKPNPTQAVPIHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFDRVPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEAWDDDAARRGYCLYKVGCKGPTTYNACSTVRWNGGTSFPIQAGHGCIGCSEDGFWDKGSFYDRLTHINQFGVEANADKIGGTAAVVLGAAAAAHAAASAIQRVSSKRDRDGR
>NZ_CP013434.1|WP_045579943.1|487859_488927_+|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MTAPVLPGAGGRASGARGKLVLLLAALAAFNLAAWGWAVAVFGGQPTLMGACVLAYTFGLRHAVDADHIAAIDNVTRKLMHEGRRPLTVGLMFSLGHSTIVIVASAAIAAAAFGLRERLAAFHDIAGTIGTLVSTTFLLAIAVANLVTLHSVVRTLRRVKRGERYADAHADTAPHHHGFLARLLRPVLRMVTKSWHMYVLGALFGLGFDTATEIGVLGISATSAAHGMSAWSIMVFPALFTASMSLVDTADSMLMLGVYGWAFREPVRKLYYNVGITALSAAVALLIGCVEGFALLGDTFGIRGAFRDVVDALNAHLGALGYAIVVLCAASWLVCAAIYRFRRGSFAPLAEHDHG
>NZ_CP013434.1|WP_069224868.1|488958_490569_+|carbamoyltransferase
MSHRIPPAHADGVLGVQTGPAPNTGAAWVATAAGARRIAHAGQERFDRIKQSRAYPAAAVDACRIALDLPADARPSLVACVDTGQAAPLPPYVDTVPQLRVEHALCHAAAAYYCSPFDEAAILVVDGHRHEQGATPSSHSVWIGWNGRIEPVMCSASCGIGALYEAVTVAIGFGAHETGKTMGLAPYGDDAAAPDLGGRLDGLAVDYGARCDADGARLFGLSPLAGATDDESLAARATLARAAQRECERAMLHLARAVREMTGMRRLCLAGEVSLNGRANDLVWRDAGFDAVFAGPAGADCGTSLGAALWGYHGVQGVPFRPGPFSPYGGRPYGDADVDAALAALPDRARYRDTRGTIDELAERTAALLAAGQCVALHAGRAEMGPRALGNRSLLMSPAHADARDRMNLRVKRREAFRPFAPCVPVEDAARYFELDTPSPYMLRICAVRPQWRARIAAITHVDGTARPQTVSPQDNPHLHRLLRAFERVAGIPVLLNTSFNVAGEPLVETPADALRGFARNDIDALWIGDRLLEKR
>NZ_CP013434.1|WP_045579641.1|490849_491110_+|IS3-family-transposase
MALAAVKGEQTLAELAQQFDVHPNQITEWKRQLQERAADVFGAAGPASNESPVDVKTLHAKIGQLTLENHFLSGALGKAGLLSAKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

183292 : 273280

uncultured_Caudovirales_phage(15.0%)

transposase,integrase,plate

attL 212716:212742|attR 250248:250274

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043291147.1\|183292_184498_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_034193888.1\|184814_186695_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_069264971.1\|186823_189823_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_045579752.1\|189822_190692_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_034193885.1\|190735_191179_+	hypothetical protein	NA	NA	NA	NA
WP_006482386.1\|191244_191703_+	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_045579751.1\|191724_195972_+	RHS domain-containing protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.2e-28	52.2
WP_081333279.1\|195981_196506_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_081333280.1\|196575_197001_+	RhsIA family immunity protein	NA	NA	NA	NA
WP_081333281.1\|197194_197797_+	hypothetical protein	NA	NA	NA	NA
WP_059475982.1\|199293_199758_+	hypothetical protein	NA	NA	NA	NA
WP_069264974.1\|199949_201488_+\|transposase	IS3-like element ISBmu11 family transposase	A0A1B1P773	Bacillus_phage	2.8e-44	35.2
WP_045579749.1\|203947_204769_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_045579748.1\|204752_205709_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_106919311.1\|207317_208555_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_081333162.1\|208553_209342_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_069263160.1\|209338_210316_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_069263164.1\|210312_211344_+\|integrase	site-specific integrase	A0A076YL28	Mesorhizobium_phage	4.3e-12	27.9
212716:212742	attL	NA	NA	NA	NA
WP_069224829.1\|212883_214407_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.9e-150	52.8
WP_059476177.1\|214419_215187_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.5e-70	53.3
WP_155625324.1\|215613_215778_+	hypothetical protein	NA	NA	NA	NA
WP_069224830.1\|216539_217583_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	2.3e-106	52.5
WP_172820468.1\|218018_218333_-	H-NS histone family protein	NA	NA	NA	NA
WP_126221127.1\|218610_219072_-	hypothetical protein	NA	NA	NA	NA
WP_126221126.1\|219119_219566_-	hypothetical protein	NA	NA	NA	NA
WP_155625382.1\|219579_219831_-	hypothetical protein	NA	NA	NA	NA
WP_069264976.1\|219864_220089_-	hypothetical protein	NA	NA	NA	NA
WP_081333285.1\|220130_220406_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_069264977.1\|220417_220738_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_069264979.1\|220731_220980_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_069264981.1\|221106_221778_-\|integrase	site-specific integrase	A0A1W6DWU1	Sphingobium_phage	3.1e-11	29.0
WP_045579170.1\|221941_222268_+	H-NS histone family protein	NA	NA	NA	NA
WP_069264983.1\|222398_223310_+	SOS response-associated peptidase family protein	NA	NA	NA	NA
WP_155772662.1\|223871_224213_-	hypothetical protein	NA	NA	NA	NA
WP_059896631.1\|224445_225447_-	hypothetical protein	NA	NA	NA	NA
WP_069265114.1\|225421_228130_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.0e-49	27.1
WP_155624630.1\|228411_228831_+	hypothetical protein	NA	NA	NA	NA
WP_059889025.1\|228911_229637_-	hypothetical protein	NA	NA	NA	NA
WP_059889026.1\|229767_230544_-	hypothetical protein	NA	NA	NA	NA
WP_059889027.1\|230574_230832_-	hypothetical protein	NA	NA	NA	NA
WP_155772663.1\|231372_231834_+	hypothetical protein	NA	NA	NA	NA
WP_081062961.1\|233360_233564_-	hypothetical protein	NA	NA	NA	NA
WP_069264987.1\|234099_235797_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-18	28.9
WP_045579527.1\|236007_237198_-	EAL domain-containing protein	NA	NA	NA	NA
WP_081062960.1\|239570_240080_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.5e-26	67.1
WP_011880233.1\|239963_240317_-	BON domain-containing protein	NA	NA	NA	NA
WP_069264988.1\|241050_242124_+	VIT1/CCC1 transporter family protein	NA	NA	NA	NA
WP_080938712.1\|242214_242637_+	DUF3331 domain-containing protein	NA	NA	NA	NA
WP_162486633.1\|242525_242828_-\|transposase	transposase	NA	NA	NA	NA
WP_081333301.1\|243797_244556_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_069264994.1\|244710_245559_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_069265118.1\|245800_246829_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_069264996.1\|246899_247730_-	oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.3e-08	24.9
WP_069264999.1\|248092_248563_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_081333286.1\|248660_249632_+	patatin-like phospholipase family protein	A0A141ZNL4	Faustovirus	4.3e-06	27.6
WP_155772664.1\|251025_251376_-	hypothetical protein	NA	NA	NA	NA
250248:250274	attR	NA	NA	NA	NA
WP_171026924.1\|251442_252640_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	3.9e-102	65.5
WP_155772665.1\|252996_253203_-	hypothetical protein	NA	NA	NA	NA
WP_081333287.1\|253446_253650_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069265002.1\|253683_253998_-	hypothetical protein	NA	NA	NA	NA
WP_069265003.1\|254506_254776_+	hypothetical protein	NA	NA	NA	NA
WP_069265123.1\|254930_255569_-	response regulator transcription factor	NA	NA	NA	NA
WP_069265004.1\|255919_257467_-	GGDEF domain-containing protein	A9J564	Pseudomonas_phage	9.9e-05	35.8
WP_069265006.1\|257991_259473_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.5e-15	34.7
WP_069265124.1\|259997_261071_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_069265126.1\|261369_262626_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_069265008.1\|262951_263869_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.9e-20	28.6
WP_069265009.1\|264016_264919_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011880273.1\|264963_267945_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.2e-80	26.6
WP_011880272.1\|268344_269400_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	2.6e-12	26.2
WP_080938715.1\|269904_270612_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_011880269.1\|271043_271256_+	hypothetical protein	NA	NA	NA	NA
WP_069263239.1\|271464_271716_+	hypothetical protein	NA	NA	NA	NA
WP_069264828.1\|271750_273280_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.7e-124	46.1

DBSCAN-SWA_2

276748 : 372671

Acinetobacter_phage(14.29%)

transposase,protease,integrase

attL 277042:277060|attR 373654:373669

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155772666.1\|276748_277922_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-72	47.5
277042:277060	attL	NA	NA	NA	NA
WP_081333288.1\|277885_278488_-	hemerythrin domain-containing protein	NA	NA	NA	NA
277042:277060	attL	NA	NA	NA	NA
WP_011880262.1\|278513_279713_-	NnrS family protein	NA	NA	NA	NA
WP_011880261.1\|279709_280222_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_011880260.1\|280668_282360_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_155772667.1\|282367_282610_-	hypothetical protein	NA	NA	NA	NA
WP_069265014.1\|282787_283903_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-29	37.6
WP_069227432.1\|283895_284783_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_069265016.1\|284850_286176_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_069265018.1\|286194_287088_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_069265020.1\|287092_288592_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_172820476.1\|288653_289373_-	FCD domain-containing protein	NA	NA	NA	NA
WP_069265024.1\|290013_291144_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_081333289.1\|291211_292441_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_069265026.1\|292499_293702_+	formaldehyde dehydrogenase, glutathione-independent	A0A2P1ELD9	Moumouvirus	1.9e-11	29.2
WP_081333290.1\|294156_294585_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_069265028.1\|294581_296534_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_069265030.1\|296530_298432_-	hypothetical protein	NA	NA	NA	NA
WP_081059964.1\|298842_299370_-	TniQ family protein	NA	NA	NA	NA
WP_009687734.1\|299347_300217_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_069265133.1\|300225_301854_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011880259.1\|302111_302462_+	hypothetical protein	NA	NA	NA	NA
WP_059890401.1\|302501_303449_-\|transposase	IS5-like element ISBvi6 family transposase	A0A1V0E8E1	Vibrio_phage	2.1e-58	43.3
WP_011880257.1\|303535_304315_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_011880256.1\|304315_305494_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_011880255.1\|305505_306447_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_012464895.1\|306455_306650_-	hypothetical protein	NA	NA	NA	NA
WP_011880254.1\|306697_308926_-	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_081061566.1\|309050_310577_-	TolC family protein	NA	NA	NA	NA
WP_011880252.1\|310584_311712_-	ABC transporter permease	NA	NA	NA	NA
WP_011880251.1\|311714_314543_-	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	1.6e-24	32.2
WP_011880250.1\|314546_315545_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
315362:315380	attR	NA	NA	NA	NA
WP_134206856.1\|315548_315902_-	hypothetical protein	NA	NA	NA	NA
315362:315380	attR	NA	NA	NA	NA
WP_011880249.1\|316342_317374_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_043292645.1\|317417_318281_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011880246.1\|318701_319880_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_105772918.1\|319936_320533_-	hypothetical protein	NA	NA	NA	NA
WP_011880244.1\|320666_321416_-	acetoacetyl-CoA reductase	A0A0K0KVL6	Prochlorococcus_phage	7.4e-06	26.1
WP_011880243.1\|321417_321870_-	hypothetical protein	NA	NA	NA	NA
WP_060081749.1\|322168_322966_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	4.4e-33	37.2
WP_011880242.1\|322958_324464_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	5.4e-16	30.8
WP_007182911.1\|325019_325820_-	cytochrome c4	NA	NA	NA	NA
WP_011880241.1\|325816_327442_-	b(o/a)3-type cytochrome-c oxidase subunit 1	NA	NA	NA	NA
WP_011880240.1\|327431_328019_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_007182914.1\|328029_328230_-	hypothetical protein	NA	NA	NA	NA
WP_007182915.1\|328239_329583_-	cytochrome c	NA	NA	NA	NA
WP_007182916.1\|329579_330287_-	c-type cytochrome	NA	NA	NA	NA
WP_011880238.1\|331174_331813_+	response regulator transcription factor	NA	NA	NA	NA
WP_011880236.1\|332472_332772_-	H-NS histone family protein	NA	NA	NA	NA
WP_012218130.1\|332873_333368_+	response regulator	NA	NA	NA	NA
WP_155121928.1\|333600_334687_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.2e-42	35.2
WP_081061553.1\|335009_335432_-	DUF3331 domain-containing protein	NA	NA	NA	NA
WP_011880234.1\|335524_336598_-	VIT1/CCC1 transporter family protein	NA	NA	NA	NA
WP_011880233.1\|337331_337685_+	BON domain-containing protein	NA	NA	NA	NA
WP_069265033.1\|338768_340250_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.1e-16	35.2
WP_011885805.1\|340311_340854_+\|transposase	transposase	NA	NA	NA	NA
WP_011880229.1\|340829_341111_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-08	32.1
WP_155625227.1\|342171_342988_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_155121863.1\|342997_344172_-\|transposase	IS3-like element ISBvi4 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-75	48.9
WP_011880225.1\|344538_345066_-	TniQ family protein	NA	NA	NA	NA
WP_011880224.1\|345043_345913_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_085954470.1\|346562_347379_+\|transposase	IS5-like element ISBcen20 family transposase	NA	NA	NA	NA
WP_043292639.1\|348852_349104_-	hypothetical protein	NA	NA	NA	NA
WP_011880221.1\|349299_349602_-	hypothetical protein	NA	NA	NA	NA
WP_011880220.1\|349633_350593_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011880219.1\|350589_351723_-	nucleotide-binding protein	NA	NA	NA	NA
WP_011880218.1\|351712_352120_-	hypothetical protein	NA	NA	NA	NA
WP_011880217.1\|352407_352746_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011880216.1\|352771_353188_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_105784261.1\|353966_354266_+	hypothetical protein	NA	NA	NA	NA
WP_011880212.1\|357514_357880_+	hypothetical protein	NA	NA	NA	NA
WP_155772669.1\|358483_358687_+	hypothetical protein	NA	NA	NA	NA
WP_106919343.1\|358933_359751_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_126221109.1\|359909_360473_+	hypothetical protein	NA	NA	NA	NA
WP_155768328.1\|360475_361147_+	hypothetical protein	NA	NA	NA	NA
WP_106919311.1\|361073_362310_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_155768329.1\|362367_363294_+	hypothetical protein	NA	NA	NA	NA
WP_081333292.1\|363191_365225_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_069224914.1\|365351_367451_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	4.0e-41	28.2
WP_059475418.1\|367462_368881_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_126221193.1\|368912_370346_+	TolC family protein	NA	NA	NA	NA
WP_126221107.1\|370472_370877_+	hypothetical protein	NA	NA	NA	NA
WP_046424735.1\|370973_372671_+\|integrase	site-specific integrase	NA	NA	NA	NA
373654:373669	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013433

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection