CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013440	Burkholderia vietnamiensis strain HI2297 chromosome 2, complete sequence	0 crisprs	csa3,DinG,cas3,RT,DEDDh	0	0	0	0
NZ_CP013441	Burkholderia vietnamiensis strain HI2297 chromosome 3, complete sequence	2 crisprs	PD-DExK,RT	2	2	3	1
NZ_CP013439	Burkholderia vietnamiensis strain HI2297 chromosome 1, complete sequence	2 crisprs	cas3,DEDDh,csa3,WYL,DinG	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013441_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013441_1

135535-135622

Orphan

Consensus_repeat	Method
GCCCGACCTGCGACGGCGATGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013441_1

>merge|NZ_CP013441|1|135535-135622|CRISPRCasFinder
GCCCGACCTGCGACGGCGATGCGGAGCAATTCATGGTGCTGAGGGACTGACGTTGACCACGCGAAGCCCGACCCGCGACGGCGATGCG

>NZ_CP013441|1|1|135535-135622|CRISPRCasFinder
GCCCGACCTGCGACGGCGATGCG	GAGCAATTCATGGTGCTGAGGGACTGACGTTGACCACGCGAA
GCCCGACCCGCGACGGCGATGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013441.1\|WP_045579643.1\|133592_133943_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP013441.1\|WP_011880067.1\|133939_134473_+\|hydrogenase	unknown	unknown	gnl\|CDD\|239263
NZ_CP013441.1\|WP_011880072.1\|137372_137720_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NZ_CP013441.1\|WP_011880076.1\|140203_141340_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP013441.1\|WP_080484346.1\|124886_125369_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP013441.1\|WP_011880080.1\|145078_146536_+\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|380187
NZ_CP013441.1\|WP_011880077.1\|141336_142413_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
NZ_CP013441.1\|WP_011880079.1\|144032_145070_+\|NADH-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|224654
NZ_CP013441.1\|WP_011880061.1\|127374_128442_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP013441.1\|WP_011880064.1\|132206_132917_+\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	unknown	unknown	gnl\|CDD\|273985
NZ_CP013441.1\|WP_011880073.1\|137749_138787_+\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
NZ_CP013441.1\|WP_011880071.1\|136131_137385_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225798
NZ_CP013441.1\|WP_034192889.1\|129100_130174_+\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP013441.1\|WP_011880075.1\|139949_140207_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP013441.1\|WP_011880063.1\|130231_132088_+\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057
NZ_CP013441.1\|WP_011880068.1\|134490_135354_+\|hydrogenase-expression/formation-protein	unknown	unknown	gnl\|CDD\|377409
NZ_CP013441.1\|WP_011880074.1\|138783_139959_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223146
NZ_CP013441.1\|WP_059475439.1\|142533_144036_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013441.1\|WP_046424893.1\|125732_127343_-\|carbamoyltransferase	unknown	unknown	gnl\|CDD\|225103
NZ_CP013441.1\|WP_014725812.1\|132924_133602_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|129246

Protein	Function_ID	Function_description	E-value
NZ_CP013441.1\|WP_045579643.1\|133592_133943_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	7.79732e-22
NZ_CP013441.1\|WP_011880067.1\|133939_134473_+\|hydrogenase	gnl\|CDD\|239263	cd02965, HyaE, HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.	1.19404e-47
NZ_CP013441.1\|WP_011880072.1\|137372_137720_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	3.26172e-39
NZ_CP013441.1\|WP_011880076.1\|140203_141340_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP013441.1\|WP_080484346.1\|124886_125369_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.59849e-05
NZ_CP013441.1\|WP_011880080.1\|145078_146536_+\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	5.6028e-128
NZ_CP013441.1\|WP_011880077.1\|141336_142413_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	9.76796e-174
NZ_CP013441.1\|WP_011880079.1\|144032_145070_+\|NADH-ubiquinone-oxidoreductase	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.62496e-67
NZ_CP013441.1\|WP_011880061.1\|127374_128442_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	1.0005e-127
NZ_CP013441.1\|WP_011880064.1\|132206_132917_+\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	gnl\|CDD\|273985	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.	6.27348e-76
NZ_CP013441.1\|WP_011880073.1\|137749_138787_+\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	3.54357e-128
NZ_CP013441.1\|WP_011880071.1\|136131_137385_+\|hypothetical-protein	gnl\|CDD\|225798	COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion].	8.21225e-05
NZ_CP013441.1\|WP_034192889.1\|129100_130174_+\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	0
NZ_CP013441.1\|WP_011880075.1\|139949_140207_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	5.78658e-32
NZ_CP013441.1\|WP_011880063.1\|130231_132088_+\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0
NZ_CP013441.1\|WP_011880068.1\|134490_135354_+\|hydrogenase-expression/formation-protein	gnl\|CDD\|377409	pfam04809, HupH_C, HupH hydrogenase expression protein, C-terminal conserved region. This family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown.	1.08896e-49
NZ_CP013441.1\|WP_011880074.1\|138783_139959_+\|hypothetical-protein	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	5.28621e-76
NZ_CP013441.1\|WP_059475439.1\|142533_144036_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.4706e-149
NZ_CP013441.1\|WP_046424893.1\|125732_127343_-\|carbamoyltransferase	gnl\|CDD\|225103	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones].	4.22664e-133
NZ_CP013441.1\|WP_014725812.1\|132924_133602_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|129246	TIGR00140, Hydrogenase_expression/formation_protein_HupD, hydrogenase expression/formation protein. valid names: hupD, hynC, hoxM. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease. [Protein fate, Protein modification and repair].	4.13993e-68

>NZ_CP013441.1|WP_011880068.1|134490_135354_+|hydrogenase-expression/formation-protein
MQMKTFPVPVVPFGPGSQPEGDAVLDYMPMPQAMHTFVAPSLPERADARALDVVRGILLTVLDALDACRRGEQPAPIDLTACDADALRILNAVLGEGEVSARIDTADAGSVLIQETVFAGVWRIAEDGPAGRAERIEVGGAPAALAAAAHAAAAPELPVSDTHPSGVMNAPAILTEVRDQVARWRAGAAPHVINLTLLPLSSEDGAFIDAVLGGGPVSVLSRGYGNCRIASTGVVHCWRIAYFNSQDTLILNTIEITDLPEIVQAAPEDIDDSHERLAQLIDWVEEA
>NZ_CP013441.1|WP_011880067.1|133939_134473_+|hydrogenase
MSETSGSVPGATQADAPNVPNVPNAAAAGQDCPAVVQRLIEQAHATFVDEHTLDGWLADGGECVVLLMGDPVRFPESLDVAAVLPELAHVAAVRFGRALRLAVATRAGENAIARRFGSLRWPALLWLRDGQYVTVLSGMMDWDDYVKCVADALAGPTTRAPSIGIPVNVAGGSSGCH
>NZ_CP013441.1|WP_045579643.1|133592_133943_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCIGLPMQVVEAQPGHAWCVGRGVRRRVDTALVGPCAPGDWLLVFLDAARERLDAARAAEIDATLALIESVMAGEGGAASPAAFALPSALGVDELNRLVGGPQRAAGSLAVPEESK
>NZ_CP013441.1|WP_014725812.1|132924_133602_+|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MDTSPQTIPSAQDGAAIVALGIGNVLWADEGFGVRCIEALQQRFECAPNVTLMDGGTQGLYLIQHVQAADFLLIFDAVDYGLAPGELKIVEDDEVPKFLGVRKMSLHQTGFQEVLMLAQLTGKYPRRVVLIGCQPEEIEDYGGSLRPCVKAALERALDAGVAYLREWGGAPLPRRTALRDDEAVTLHHLALARYEGERPSEADACRIGDERVLVRALAKEPPSCA
>NZ_CP013441.1|WP_011880064.1|132206_132917_+|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit
MTMQTQSRRGRAPDTVPAAKAIYVYEAPVRIWHWMNAASIAVLSITGYLIGSPLATQPGEASAHFLMGYIRFAHFAAAYLFAVGLAGRAYWALVGNHHAREMFWVPVFTRDYWLDVFGMLRYYMFLGPCPRQYSGHNPLSRFAMFFVFLTVSLFMVVTGFALYGEGAQAGSWQQRTFGWIRPLLGQSQGVHTWHHLGMWAILLFVILHVYAAIREDIMGRQSVVGSMISGYRTFKD
>NZ_CP013441.1|WP_011880063.1|130231_132088_+|nickel-dependent-hydrogenase-large-subunit
MTAYSTQGFQLDNSGRRIVVDPVTRIEGHMRVEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALASVRAVEDALDIRIPPNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVVSALKADPKLTSELQQRVSPSHPMSSPGYFRDIQTRLRKFVESGQLGPFMNGYWGNPAYLLPPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAINIDGDLAAGAPINMERLNFVRSLIDQAETFCRNVYVPDLLAIGTIYKARGWLHGGGLAATNVMDYGTYPLVNYDPSTNQMPGGAILNGDWDNILPVDARDPEQVQEFVTHSWYQYPDNDRGLHPWDGMTEPHYELGPNTKGTRTAIESVDESAKYSWVKAPRWRGHAMEVGPLARYILGYAHAKQGNPHGARIKEQIDAALQSVNQDMPKLLGLPETTLGAKQLLPTTIGRTLARALEAQYCAEMMSDDWQRLVDNIRNGDTSTANVEKWDPSTWPAEAKGVGTVAAPRGALGHWIKIKDGRIENYQCVVPSTWNGGPRDAKGQIGAFEASLMNTPMANPEQPVEILRSLHSFDPCMACSTHVMSEDGAEMTTVTVR
>NZ_CP013441.1|WP_034192889.1|129100_130174_+|hydrogenase-small-subunit
METFYEVMRRQGISRRSFLKFCSLTATSLGLGPAFMPRIVEAMETKPRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDLLMASAGHQAEAILEEVMTKYKGNYILAVEGNPPLNQDGMSCIIGGKPFVDQLRRVSKDAKAVISWGSCASWGCVQAAKPNPTQAVPIHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFDRVPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEAWDDDAARRGYCLYKVGCKGPTTYNACSTVRWNGGTSFPIQAGHGCIGCSEDGFWDKGSFYDRLTHINQFGVEANADKIGGTAAVVLGAAAAAHAAASAIQRVSSKRDRDGR
>NZ_CP013441.1|WP_011880061.1|127374_128442_-|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MTAPVPPGAGVRASGARGKLVLLLAALAAFNLAAWGWAVAVFGGQPTLMGACVLAYTFGLRHAVDADHIAAIDNVTRKLMHEGRRPLTVGLMFSLGHSTIVIVASAAIAAAAFGLRERLAAFHDIAGTIGTLVSTTFLLAIAVANLVTLHSVVRTLRRVKRGERYADAHADTALHHHGFLARLLRPVLRMVTKSWHMYVLGALFGLGFDTATEIGVLGISATSAAHGMSAWSIMVFPALFTASMSLVDTADSMLMLGVYGWAFREPVRKLYYNVGITALSAAVALLIGCVEGFALLGDTFGIRGAFRDVVDALNAHLGALGYAIVVLCAASWLVCAAIYRFRRGSFAPLAEHDHG
>NZ_CP013441.1|WP_046424893.1|125732_127343_-|carbamoyltransferase
MSHRIPPAPADGVLGVQTGPAPNTGAAWVATAAGARRIAHAGQERFDRIKQSRAYPAAAVDACRIALDLPADARPSLVACVDTGQAAPLPPYVDTVPQLRVEHALCHAAAAYYCSPFDEAAILVVDGHRREQGATPSSHSVWIGWNGRIEPVMRSASCGIGALYEAVTVAIGFGAHETGKTMGLAPYGDDAAAPDLGGRLDGLAVDYGARCDADGVRLFGLSPLAGATDDESLAARATLARAAQRECERAMLHLARAVREMTGMRRLCLAGEVSLNGRANDLVWRDAGFDAVFAGPAGADCGTSLGAALWGYHGVQGVPFRPGPVSPYGGRPYSDADVDAALAALPDRARYRDTRGTIDELAERTAALLAAGQCVALHAGRAEMGPRALGNRSLLMSPAHADARDRMNLRVKRREAFRPFAPCVPVEDAARYFELDTPSPYMLRICAVRPQWRARIAAITHVDGTARPQTVSPQDNPHLHRLLRAFERVAGIPVLLNTSFNVAGEPLVETPADALRGFARNDIDALWIGDRLLEKR
>NZ_CP013441.1|WP_080484346.1|124886_125369_-|IS3-family-transposase
METAVAGARCGCVRRSGPGIERIAGRCEDAACEDRPVDTGEPFFVRSARQGRTAERKAMIDRTHALPVSRQTRLVGIARSSVYYRPQPVSEVDRLLMRRIDEQHMEFPFSGARMLARLLRREGHEVGRRRVRTLMKRMGVEALCRDRKFCQLASVELLAE
>NZ_CP013441.1|WP_011880071.1|136131_137385_+|hypothetical-protein
MTGVASTSEDTSGFAALAGRYVVRPGRSPSIDGGRPPLAGLLLAGQPAALAAPRLSAVFSLCGRAHALCAELAVTAAGAYANAGGAAGDCGGKGDADGNVDRNGAGDDHDASRGEGERDGEDARSATLARETIAEHLRRIWLDWPARLVGGAPCALPDVRAAGTREWIERHVLGEPADGWLARWDQDPRACLSAWTARATSFPASLLLHCRTVADALRMPPRALRIDGADRARLRRIGAAIAGDPRFAQRPEQDGAPAETGVWTRCGDPHAAAYDSAWLRLGARVAELARLAAGGPAAFALRSGALALAPGEALAWCETARGVLIHWVRLVPGDAARVADYRVASPTEWNFHPDGTLAHALARVDVRPDGGGDAGLAARVGALMGAFDPCIAYALETAAPVRRDDDHTNGNRSTCMK
>NZ_CP013441.1|WP_011880072.1|137372_137720_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEVSLAGGVLAAVEAAAARERFARVNVLRLEVGRLAGVEVDALRFALDAMAPGTCLAGARIEIAEPPGRAWCLNCHCDVPLAARGEPCGRCGGYWLQPNGGTELRIVDMLVDDA
>NZ_CP013441.1|WP_011880073.1|137749_138787_+|hydrogenase-nickel-incorporation-protein-HypB
MCVVCGCDSPDGAHLDRHDAHHAHHDAQAHVRADAASGDLHYGLGPAGVTVHGLDQGRTVRIEQDVLGENDRHAAHNRRHFAAHGVRALNLVSSPGSGKTTLLCATIAALRARAPTLPIAVIEGDQQTANDAERIRAAGAPAIQVNTGKGCHLDAAMVAAAYERLPLHAHGHDHGHAHGHGHEHHHHDHDHHHPHDAHASSERRGAAQQPDSVLFIENVGNLVCPALWDLGEDAKVAILSVTEGEDKPLKYPDMFAAARLMIVNKTDLLPYVQFDVERCIEYARRINPALDVICVSATTGDGIDAWLDWVLRTGDARGPLAARIGELEAELAALRAQQRRAGDAA
>NZ_CP013441.1|WP_011880074.1|138783_139959_+|hypothetical-protein
MTLRRERLPRAWGADTVLATGAWLKNAACVYVDGDVYWSPLHGDLDDPRHCVALEASVASLVDAARQAGRPVRAIAHDLHPDFHSSRLAVEWSERLGVPAIAVQHHHAHIGAVAAEHGLAEPVVGLALDGVGLGTDGAAWGGELLEVAPDGWRRLGHLTPLALPGGDVAAREPWRMAAAALHTLGRADEIEARLGGDVGTRAARTIGTMLARGLNCPPSTGAGRWFDAAAGLLGVCRHQCTEAEAAIALERHAADYLRDHPEPDTDGLWRIADDGELDLRPLLVRVLELADAGASAHGAALFHLALADALAAWAAAAAHGRAVLLGGGCFANRLLSARLRAALDARGVRSCAPSSVPCGDAGLALGQAWVAAHTLTSGAVRATSEGVSTCV
>NZ_CP013441.1|WP_011880075.1|139949_140207_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPARVVELRDADMGVVDLGGVRKTISLALVPDARLGEYVIVHVGYALGRIDPDEAERTLALFGELAHAAGDGDVHPSGAPQ
>NZ_CP013441.1|WP_011880076.1|140203_141340_+|hydrogenase-formation-protein-HypD
MKYIDEFRDRALAERISARIQAEAQPGTRYHFMEFCGGHTHAISRYGVTDLLPDNVRMIHGPGCPVCVLPVGRIDLAVQLALERGVIVCTYGDTMRVPASGGMSLMRAKAHGADIRMVYSPLDALKIARLNPDREVVFFAIGFETTTPPTALIVRDAAAAGVDNFSVLCCHVLTPAAITHLLAAPAVAADAVPLDGFIGPAHVSIVIGSAPYEGFARDYRKPVVIAGFEPLDVMQAILMLIRQVNDGRAEVENEFSRAVTRAGNAAAQALMDDVFEARESFEWRGLGEVPASALRIRAKYARHDAEARYGLVYRPVADHRKCECGAILRGLKQPRDCSLFGTVCTPENPMGSCMVSSEGACAAHYSYGRFKDIPLVPA
>NZ_CP013441.1|WP_011880077.1|141336_142413_+|hydrogenase-expression/formation-protein-HypE
MSSTPTPRTKPAYVRPLNFRDGRIDMGHGAGGRASAQLIRELFVAAFDNEWLRQGNDQAAFAPPATAPGERVVMATDAHVVSPLFFPGGDIGSLAVHGTVNDVAMSGARPLYLAASFIIEEGFALADLKRIVESMANASRECGVPIVTGDTKVVERGKGDGVFITTTGVGVVPAGIRIDGALARPGDAVLLSGTIGEHGVAIMSTREALEFDVEISSDSAALHTLVASMLAAVPGVRVLRDPTRGGLATTLNEIASQSGVGMLIREDAIPVLPQVDAACELLGLDPLYVANEGKLVAVCAAEDAPALLAAMRAHPLGAHAVQIGEVTEDAHGFVQVETKFGGRRIADWLSGEQLPRIC
>NZ_CP013441.1|WP_059475439.1|142533_144036_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSSPLPVHPSTDPEPDPAPLRRPPTVLVVDDELRAQETIRRVLDEEFEVLTASSADEARAILQQQPVAVILCDQRMPGRTGVEFLSEVRETWPDTVRIIVSGYTDSEDIVAGINQAGIHRFVLKPWMPDHLLHTVRQAAEAQSLQQDMHRLDLELRNSVPLLRQRSHEKLAQVQNTLGFDAIVRAPGSPLDPICKLASKLARYDLSILILGESGTGKEMLARAIHYASPRAAGPFVVENCAAVADTLLESELFGHKRGAFTGAVHDHAGLFQRANGGTIFLDEIGDTSLAFQVRLLRVLQEGEVRPVGATRAVPVDVRVIAATHRDLEREVEAGRFREDLYYRIATATLALPPLRERSGDLVPIAHRLLQAIAEHESRPAGLDFARDALAVLLGYAWPGNIRELRNEIYRAVALSDDDLIRADAFSPKVLRGQSGPAARRPEAQIASAGTLQERLDAMETMLIKEALLRHRWNKTRAASELGLSRAGLRQKMQRFGLEKK
>NZ_CP013441.1|WP_011880079.1|144032_145070_+|NADH-ubiquinone-oxidoreductase
MSVDTRAPDGTGAFNVLWLQSGGCGGCNMSLLCADTPDFSGMLSRAGIRLLWHPSLSLETGADARDVLLACLDGTVELHALCVEGAMLRGPNGTGRFHVLAGTGVPMIDWVARLASVAHYTVAIGTCAAYGGITAAGANPADACGLQYDGDQPGGLLGAAYRSRSGFPVVNVAGCPTHPDWVVETLSALSMSLLDPAALDTLGRPRFYADQLVHHGCTRNEFYEYKASAVRPSDLGCMMEHMGCKGTQAHADCNTRLWNGDGSCTRGGYACINCTEPGFEEPGHAFHRTPNVAGIPIGLPSDMPKAWFVALASLSKAATPKRVRENATADHLKVAPAVRSRPRNK
>NZ_CP013441.1|WP_011880080.1|145078_146536_+|nickel-dependent-hydrogenase-large-subunit
MSRLVIGPFNRVEGDLEVRIEVVDGRVSDAHVNATMFRGFEQILLDRDPLDALVYVPRICGICSVSQGVAAARALADLAGVTPAPNGQIATNLMLAAENLADHLSHFYLFFMPDFVRPVYAARAWHAEAVSRFTPYQGERHRASLAARQRWLRLMGTLGGKWPHTGSIQPGGSARAIDNAERIRLLGFIGEFRQFLEEVLFDAPLEEIAQLDSEAALAAWRARGERRGDLRFFLTLADDLGLDRLGAGPDLYLSYGAYPQPDGAHAFRGGVWDAQRKQADALDLDAITEDATHAWLDDAGGARHPFAGLTEPRADKPGAYTWNKAPRLNGAVLETGAIARQLADGHPLIADAVARCGGSVYTRVLARLLELARVVPMMEQWVRALAPGMPYCAAFALPDEGRAVGLNEAARGSLGHWLAVKDGRIANYQIIAPTSWNFSPRDAGGRPGALEAALIGAPVEPGETTPVAVQHIVRSFDPCMVCTVH

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Crispr_ID: NZ_CP013441_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013441_2

322388-322638

Orphan

Consensus_repeat	Method
CCTCGACGTCGACGACGGCCAGCTCGCTGTCGACCGGCGTGAGCTCGCTCTCCACGGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013441_2

>merge|NZ_CP013441|2|322388-322638|PILER-CR
GCCCGTGGAGAGCGAACTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTGGAAGTCGACAGCGACGCCACATTGCTGTTCGTCGTGGAGAGGCCCGTGGAGAGCGAGCTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTCGAGGTCGACAGCGACGCAACGTTGCTGTTTGTCGTGGAGACGCCCGTCGAGAGCGAGCTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTCGAGG

>NZ_CP013441|2|1|322388-322638|PILER-CR
GCCCGTGGAGAGCGAACTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTGGAAG	TCGACAGCGACGCCACATTGCTGTTCGTCGTGGAGAGGCC
CGTGGAGAGCGAGCTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTCGAGGTCG	ACAGCGACGCAACGTTGCTGTTTGTCGTGGAGACGCC
CGTCGAGAGCGAGCTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTCGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013441.1\|WP_155121933.1\|328118_329492_+\|galactosyl-transferase-GMA12/MNN10-domain-protein	unknown	unknown	gnl\|CDD\|368535
NZ_CP013441.1\|WP_155121930.1\|307293_307530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013441.1\|WP_043292673.1\|338145_338967_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371541
NZ_CP013441.1\|WP_059461596.1\|337205_338162_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_CP013441.1\|WP_045579740.1\|314009_315143_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013441.1\|WP_155121863.1\|334837_336012_-\|IS3-like-element-ISBvi4-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP013441.1\|WP_155121932.1\|325723_326197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013441.1\|WP_106919390.1\|307650_309519_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP013441.1\|WP_059669413.1\|309563_309875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013441.1\|WP_045579741.1\|315331_316027_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP013441.1\|WP_059460898.1\|312268_312895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013441.1\|WP_059460897.1\|312891_314013_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013441.1\|WP_045579738.1\|311129_312272_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013441.1\|WP_052691595.1\|326241_326949_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP013441.1\|WP_106919380.1\|331613_331850_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP013441.1\|WP_045579745.1\|327451_328075_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP013441.1\|WP_059461598.1\|329464_330877_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP013441.1\|WP_069239529.1\|310273_311125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131971
NZ_CP013441.1\|WP_080484362.1\|332134_332977_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP013441.1\|WP_045579737.1\|309912_310260_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013441.1\|WP_043292673.1\|338145_338967_-\|hypothetical-protein	gnl\|CDD\|371541	pfam11459, AbiEi_3, Transcriptional regulator, AbiEi antitoxin, Type IV TA system. AbiEi_3 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.47282e-37
NZ_CP013441.1\|WP_059461596.1\|337205_338162_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	4.3496e-26
NZ_CP013441.1\|WP_045579740.1\|314009_315143_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	6.86669e-158
NZ_CP013441.1\|WP_155121863.1\|334837_336012_-\|IS3-like-element-ISBvi4-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.6293e-72
NZ_CP013441.1\|WP_106919390.1\|307650_309519_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.77308e-16
NZ_CP013441.1\|WP_155121933.1\|328118_329492_+\|galactosyl-transferase-GMA12/MNN10-domain-protein	gnl\|CDD\|368535	pfam05637, Glyco_transf_34, galactosyl transferase GMA12/MNN10 family. This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of C. elegans homologs where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.	1.82576e-05
NZ_CP013441.1\|WP_045579741.1\|315331_316027_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.05543e-40
NZ_CP013441.1\|WP_059460897.1\|312891_314013_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP013441.1\|WP_045579738.1\|311129_312272_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	1.03576e-173
NZ_CP013441.1\|WP_052691595.1\|326241_326949_-\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	1.54705e-24
NZ_CP013441.1\|WP_106919380.1\|331613_331850_-\|hypothetical-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	2.86078e-06
NZ_CP013441.1\|WP_045579745.1\|327451_328075_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.31421e-50
NZ_CP013441.1\|WP_059461598.1\|329464_330877_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.34797e-95
NZ_CP013441.1\|WP_069239529.1\|310273_311125_-\|hypothetical-protein	gnl\|CDD\|131971	TIGR02925, hypothetical_protein_Nmul_A0241, peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.	4.15571e-08
NZ_CP013441.1\|WP_080484362.1\|332134_332977_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.21081e-55

>NZ_CP013441.1|WP_045579741.1|315331_316027_-|OmpA-family-protein
MLQRTKVVLLSAAVLAGCSASGPTFNAYSLRLANGEQAYRVDCYGIFEGQGTCHKKAEEICGNQPVRALEDAAPLGSTSDGKPNTRILTFQCGVPSAPPPVVAPVPVPVPPPPPPPPAKVVLGGDANFDTAKWTLRPEARAKLDKLVSDASGATFALVTVKGYTDSRGSDAYNLNLSQHRAETVAAYLRDHGLQAQRYAAHGYGKADPVASNDTVEGRAKNRRVEIQLDQR
>NZ_CP013441.1|WP_045579740.1|314009_315143_-|DUF2827-domain-containing-protein
MRIGISILTHAGQNIWENGLGQNVFFLARLLRALPFVTDVVLLNCGDQTSVAANAQDGGQPLRLIPMREATECIDVAIEMGGGLDVEWLDYLRARGKRVVFFCCGQPYVGLIEPSVFKRSGYFTRANRCDAIWILSKDRDFAPMLRTLHRCPVIEVPYLWDPVFVEQRAAEIERAGLHFGYQARQEHERGLRVAIFEPNISVVKNCAIPLLVCEAAARAEPESVSRVHVLNSVQMQRHPTFEFLTRSLELARDNKLQLDQRHDFVGYMSQFANAVVSHQWHNDQNILYLDALYGDYPLIHNAPWIAELGYYYPDSDIEQGASQLVSAASDHDDQLSHYRHRSRAFLSALSSQTRANRIAYAQCLLHLVGRTAQEGAR
>NZ_CP013441.1|WP_059460897.1|312891_314013_-|DUF2827-domain-containing-protein
MSVTKRLKIGVTIFLRKGHQSIWENGIFQNCYFLAQLLQRSPLIDSVVLVNGGDGEPHEAQAFLEHSPAPVIDLETARMELDVVIELSAQLNPDWARAFCARGGHVIGMRVANDYVIDIERMMFDLPHGMLASGTPYSAIWTLPAFERSCASYYGAALRAPVRAMQHLWSPALLERTLASSGNEGFGYAPGRARWRLAILEPNICMVKTSHVPMLLADLAHRQDPSFIEHLRVFNTLHLKDDAQFAGFARSLDLVNHGRATFEPRVPIYEILNRQADAIVAHHWENAQNYVYYEALYGGYALIHNSAFLSGCGYRYADFDCEDGALALRRAFAEHDVDLVRYRDEARQFLATLDPLAESNVAQYGAAIAELYE
>NZ_CP013441.1|WP_059460898.1|312268_312895_-|hypothetical-protein
MSTAMKRHGLVRGVGPAIRASLVSAAVAASVLAHAQGLAGDGAATPTPTPTPPTSVATTPATVLGRAAHAIGIRRCAGAIDAVASRAFVNAQRQDVVLDWDRSNPDGAPFFSLSGIEYRESSAILSLTTSPALQGGCTILAERISSAPLACREVARAELTGYQAAALVRGVTVYVDPHHSRETVTLVEAPPSCVIVRRQVQFSWGVSR
>NZ_CP013441.1|WP_045579738.1|311129_312272_-|DUF2827-domain-containing-protein
MNGQQQRQHPRALRIGITIGLHNEAESLWVNGIKQNALYLMRVFQHSPLKHAVCLVNTTQVAITPQLPWDLTQFPVKPFEAAKDDLDVLVELGGQINEAQCKYLQSRGARVVSYCCGPEYVQMMEAMIFRRRMTDQVFINQCYDQVWVIPQVMETSAHFFQTLRRKPVHQVPFVWDPMCLDARTVNLPNGGQYRPHAGPKRLSIMEPNIDVMKFCLYPLLIAEQAYRRVGAQIAHVHVTNADWLALGSPEFIGVMQYLDLVREHKASFVGRYETPQFLSELTDVVISHQWGLALNYYYFDVCWNGYALVHNAQLCAGLGYFYQGNDVEAGARQLVTALTRHDEQWQDYRTRQREVIGGFLATNPKVVAQYDQLLAGLFRG
>NZ_CP013441.1|WP_069239529.1|310273_311125_-|hypothetical-protein
MKHRAYMAGWMLVGCLAAAMGRAAESSASAQVALPTGTVALVNDVPIVRGEVDDVLAKTHLPDSPEMREVAVRGLIGRELVRQAALGEGLDRAPTVAGLTGTTRVNAENRLYLERHLQVPAVTDAQVKSAYDAMVAEQGPREYQTRIIAVRDAASAAGVLEKLKAGVAFDEVARETSMDSTREAGGALPWVSFKTPPAEGKTMGVALPIAQEIARLQPGHVSSTPIAVAGQFVIVKLEASRPTQTPSYDVAAPGVRKFLEARGRNAAFERLVAGLAEHARIVR
>NZ_CP013441.1|WP_045579737.1|309912_310260_-|hypothetical-protein
MRSFDSTDRFVANVFGAGAMTCAMTMMVGLLEMVWPTMNRISGWQRLALTTVVTVAFVTLVYAMATGLAYRTRKRSWLHRDSGARRAARQGRVVGIVAGLLMGNAFVLWWGSPLP
>NZ_CP013441.1|WP_059669413.1|309563_309875_-|hypothetical-protein
MTDYTDRFVGNTLIGIALTIAIVVVGMGLLDDLAGHWIARAWTQFGVTFVVAGGLLFTQPLVSRRLHRHEVLSSPVDAAVWLGRSVGWLVGALMGAVLASQFN
>NZ_CP013441.1|WP_106919390.1|307650_309519_-|tetratricopeptide-repeat-protein
MESLTQVEDLLETGDLLGAQRALNHYRPRNDDAQAYTLMSQLLRLRGRADQARALLDVYCVHYPSTRAMEIERARVALSLGDLKAADEAFAHASVEDAFDEDWVQEWIEVSSQLGHHANAIRLALMRCQHKPGEATRWFALGLVYQRARMHQQAMDAYAEVAQRDPHAPMLHNNIGAAHLELKAYASAQHELGLALRLDPGNALAWTNLATAALKQGKLDDALVAVERACALAPNYPTALQTYSYVLKECQQWQAALHVAQRALSLEPSNASMMWSVAMLELLLGDYSNGWLHHEARWAGSPELRDVAPNLPMPRWQGEPLAGKTLFVWGEQGHGDVFQFVRFVPALAERVEREGGSLIYSGFQHLQTLLARSLHGVVDTVVPHDQAELPRADFHLPLASIPFMQGITPEQLPVRTNYLRANPAKLDAWRRRLQKASSALKVGLVWSGSRSHQRNALRSVPPQALAQVFASAQAIEWFSLQLDAAEDVAALRAGGMTLVDVSEELHSFDDTAAIIANLDLVITVCTSVAHLAAAMGRPTWVLLDVNPHWVWMTERRDSPWYPSVTLYRQADYGDWTPVLEQVVKDLSALAVKRGPVPDYSPKRTSKGNSNDASTTRRAREST
>NZ_CP013441.1|WP_155121930.1|307293_307530_-|hypothetical-protein
MSARDSRARGNIRHIARAWCDRMVRAARRLSTSRQLGLGVLLGFALGLIAMLVIVLQSAEPPVPRVVASPRGAAVRWR
>NZ_CP013441.1|WP_155121932.1|325723_326197_-|hypothetical-protein
MSAMARPTKWKPIPGKELNLAGEAGGDVLQALSDCLGRCGESAPSMDRAEDWLEGLRRCAHLLVALHLPEWVSQATQAYDAGLAQGFYGTASAIGVGMEECLPGTGSGNSHVPLREPESSGHSDDQTIENQVRELTKSLRVLGREHGDELRRWLGLG
>NZ_CP013441.1|WP_052691595.1|326241_326949_-|EAL-domain-containing-protein
MTDMRVAEQIWDAMRTHRIQLHFSRIHRADDPNDVLYRECLARIPVADGQWRAASALLPALTRLNLVSTFERYVLRRVIQFLRDHPDEIVGVNFQCDGFDSAWTAALLELEVETDVAKRLIVEVPETSHVSREFVQFIRRAGCRIAIDGYGVAYGMRADIAIGHPDIVKFDPSLLTEARQADAGLEQLSRLIRLASDVATEAVVLTGVRGPQDLSVAARAGAPWVQPARDEPGAP
>NZ_CP013441.1|WP_045579745.1|327451_328075_+|recombinase-family-protein
MKVGYARVSTDEQDLALQIDALHDARCDALFTDQGVSGAVFDRPGLDSALATLQPGDALVVWRLDRLGRSLSKLVELIERLNKRGVEFISLMESINTQSSGGVLVFHVLAALAEFEKRLISERTRAGLAAARARGQRLGRRHSLDPGQRQRALEMLQTCSLTEVAREFDVHTRTLKRLVQEHTASTESAEPIAPIDPSGETGGDRES
>NZ_CP013441.1|WP_155121933.1|328118_329492_+|galactosyl-transferase-GMA12/MNN10-domain-protein
MPTCFVLSFLAEHSPTSVANHRAYADSRGYPHYVVDACDGPRGPQALALHKYQTLLDRLHVCANDDVVLLLTESALIVGDYPIEPLVAGRDELLVRTTETLPQVNLQIWRNGAASRERLARVVARCRLGGEPFPGEPALFADAAAHDWYQPLANICVVMNSSPNVDPAWARTPTLAISLGTAEQSPPELLAVPRFRRVLAEHIQSCRTTGRPFFHFEPPAQPDPDERSTYDAGQPIALVTLYTPEIARYGAIAEHNLRQYCARHGYTLYVHRGMPQEVGLSGTGNWIKPWLLHAYLQHHSWVVWVDADVLIHAPAQRLEPLLADRTVLLARDIGQWPFNSGVMGFAQIPANLELLALLMQRIASLADRSSVYAGNGDQHYFIQTMRELGLLDETAILSPRILNTPWFFAEPDSFLVHYYGMWLEMRTLMMDYDERRRLAAQPVRIGSLPCAPSLPSC
>NZ_CP013441.1|WP_059461598.1|329464_330877_+|S41-family-peptidase
MRAFVAFLLITAAGLARADGLPADVRRSLEQAFNLIKQDYAGRVDDATLMTAAIKGMVADLDPHSQFFERAEFAKLQEHLNGGFAGVGLQVGLSDGALRVAAPVDESPAAHAGIQAGDLVTRIDDVPTPGLTLENAVKHLRGEAGTRVRLALMRPSEDRSWTVVLTRAFIRTPSVTMARPAPGYGYVRISSFGEQTVPELADRLRTLAIAEPRLRGLVLDLRDNGGGVLQDAVGVASAFVPENTLVATVVDRNPEKSHAYRTTYADYRRPAYAADPLAGIAPRFKTVPLVVLTNAQSQSVTEVFAAALQDTKRAVVMGQPTFGKGTIQVTGGLSDGAGLMLTVARYYTPTGRSIQNRGVIPDIVVDEHRSGSPIGLPPLREVDLANRLPNPLDPDDDASRAAHEREVVAQLRAIETQRTRGTRIGNQADAPARNSKSGDALLRQALNWLRRNAAMQAADQSVMVTPRAIE
>NZ_CP013441.1|WP_106919380.1|331613_331850_-|hypothetical-protein
MDRLLRQAGAQDCGRRRVIARVLLDERGHVQDVVLKHSCGDSELDARALDALREQRYGVTRTGKRAVRRWQEVAYPVD
>NZ_CP013441.1|WP_080484362.1|332134_332977_-|recombinase-family-protein
MRIGYARVSTEEQNLDLQIDALRGSGCESIYSDQGISGAKINRPGLAEALRVLKAGDTLVVWKLDRLGRSIRDLISVMSDLNRSGIRFVSLTELIDTESSTGRFTFHMIAALAEFERALISERTRAGLEAARRRGSRLGRPKALQNNEIWHARELLAAHSESVVARSLQVHPRTLSRSLKIGEAQERGSEAPEEQKLDRHVNQMKCMQSDRLELYNGLQINNTICMECTGMLIPLGSMLFLSRRIGAKNHAVRDGAAKKPLSGVTVRMAANCVASKLGRP
>NZ_CP013441.1|WP_155121863.1|334837_336012_-|IS3-like-element-ISBvi4-family-transposase
MNRIPRAVYTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWVRAAKAGKLKDVGRHQRPLTEMEAELAQVKRELAEVKMERDLPKKVRDVLREGVAVKYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA
>NZ_CP013441.1|WP_059461596.1|337205_338162_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MNTWLDHWDRRYTDRVRLLVEILPALAQEPRFALKGGTAINLFEHDLPRLSVDIDLAWLPVHDYAEDARLIAEALGRLADVLRARPLQLQVQLSAGEGAGVTRLVTSRGRARVQIETTPVMRGTVHPARNMVVRPRVEEAFGFASVQVLHFADLYAGKLAAALSRQHPRDLFDVGLLLEDERADQALWRTFLVYLTCSPKPAWEMLAPRVPADFAATFEAHFRGMTAEPVEAQVLLEIHERLLARVAGWLDEPSCAFLRSVEGERPDFDLIGLPHAAGLPAVRRKLLNLAQRTDAKRAADRGLLEEALTRIVGARSSR
>NZ_CP013441.1|WP_043292673.1|338145_338967_-|hypothetical-protein
MSEQNHGKLNLLLAELGDTSLVSSRWLRVRGYSNSLVARYVSSGWLVSPARGVYMRKSGRLQWEGVVRSMQVGEGMPLHVGGRFALSLQGHEHYLRLGDAGTITLYGAERPPAWIGKLPLTQCFEYLGKGPFDWPPMPFEAKTSATMLSEQGLAWHQAAPGADAFVCSTPERAMLELCADASDAALIYEVDALMQAMTTLRPQRVGVLLRHCRSIKAKRLFLALAERHRHAWLPHVPRDGIDLGRGKRALVPGGRLHSVYQITLPGDLDEHLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NZ_CP013441.1	319600-319639	0	1.0
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NZ_CP013441.1	319888-319927	0	1.0
NZ_CP013441_2	2.2\|322546\|37\|NZ_CP013441\|PILER-CR	322546-322582	37	NZ_CP013441.1	320467-320503	0	1.0
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NZ_CP013441.1	320272-320311	1	0.975
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NZ_CP013441.1	320623-320662	1	0.975
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NZ_CP013441.1	323689-323728	1	0.975
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NZ_CP013441.1	320368-320407	2	0.95

1. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to position: 319600-319639, mismatch: 0, identity: 1.0

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtggagag	Protospacer
****************************************

2. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to position: 319888-319927, mismatch: 0, identity: 1.0

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtggagag	Protospacer
****************************************

3. spacer 2.2|322546|37|NZ_CP013441|PILER-CR matches to position: 320467-320503, mismatch: 0, identity: 1.0

tcgacagcgacgcaacgttgctgtttgtcgtggagac	CRISPR spacer
tcgacagcgacgcaacgttgctgtttgtcgtggagac	Protospacer
*************************************

4. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to position: 320272-320311, mismatch: 1, identity: 0.975

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtcgagag	Protospacer
********************************** *****

5. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to position: 320623-320662, mismatch: 1, identity: 0.975

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtcgagag	Protospacer
********************************** *****

6. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to position: 323689-323728, mismatch: 1, identity: 0.975

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacaccacattgctgttcgtcgtggagag	Protospacer
**************.*************************

7. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to position: 320368-320407, mismatch: 2, identity: 0.95

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgcaacattgctgttcgtcgtcgagag	Protospacer
**************** ***************** *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013441_2	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	75901-75940	6	0.85
NZ_CP013441_2	2.2\|322546\|37\|NZ_CP013441\|PILER-CR	322546-322582	37	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	75904-75940	6	0.838
NZ_CP013441_2	2.2\|322546\|37\|NZ_CP013441\|PILER-CR	322546-322582	37	NZ_CP013412	Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence	115791-115827	6	0.838
NZ_CP013441_2	2.2\|322546\|37\|NZ_CP013441\|PILER-CR	322546-322582	37	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	6913-6949	6	0.838

1. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 6, identity: 0.85

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
cggtcgacagcgacgccacgttgctgttcgtcgtgctcag	Protospacer
 .*****************.***************   **

2. spacer 2.2|322546|37|NZ_CP013441|PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 6, identity: 0.838

tcgacagcgacgcaacgttgctgtttgtcgtggagac	CRISPR spacer
tcgacagcgacgccacgttgctgttcgtcgtgctcag	Protospacer
************* ***********.******   *

3. spacer 2.2|322546|37|NZ_CP013441|PILER-CR matches to NZ_CP013412 (Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence) position: , mismatch: 6, identity: 0.838

tcgacagcgacgcaacgttgctgtttgtcgtggagac	CRISPR spacer
tcgacagcgacgcgacgttgctgttggtcgtgctcag	Protospacer
*************.*********** ******   *

4. spacer 2.2|322546|37|NZ_CP013441|PILER-CR matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.838

tcgacagcgacgcaacgttgctgtttgtcgtggagac	CRISPR spacer
tcgacagcgacgcgacgttgctgttggtcgtgctcag	Protospacer
*************.*********** ******   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29604 : 66146

Synechococcus_phage(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081333277.1\|29604_29925_+\|transposase	transposase	NA	NA	NA	NA
WP_011880403.1\|30212_31376_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_059474828.1\|31777_33535_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_011880401.1\|33736_33958_-	hypothetical protein	NA	NA	NA	NA
WP_155625216.1\|34098_35139_-	TIGR00730 family Rossman fold protein	F4YCQ1	Synechococcus_phage	4.0e-10	39.8
WP_011880399.1\|35161_35497_-	cytochrome c	NA	NA	NA	NA
WP_059474829.1\|35516_36518_-	nitroreductase	NA	NA	NA	NA
WP_069246610.1\|36694_37684_+	zinc-dependent alcohol dehydrogenase family protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.3e-18	31.4
WP_011880396.1\|37809_38583_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_014726029.1\|38965_39613_-	response regulator transcription factor	NA	NA	NA	NA
WP_011880394.1\|40225_40696_+	universal stress protein	NA	NA	NA	NA
WP_014726026.1\|40756_41590_-	universal stress protein	NA	NA	NA	NA
WP_059474831.1\|41586_42090_-	universal stress protein	NA	NA	NA	NA
WP_059474832.1\|42159_43359_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_011880390.1\|43367_44207_-	universal stress protein	NA	NA	NA	NA
WP_011880389.1\|44395_44926_+	hypothetical protein	NA	NA	NA	NA
WP_011880388.1\|44915_45662_+	acetoacetyl-CoA reductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.2e-05	23.5
WP_011880387.1\|45795_47610_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011880386.1\|47629_48670_+	zinc-dependent alcohol dehydrogenase family protein	E3SJ82	Synechococcus_phage	2.1e-14	26.4
WP_059464014.1\|48907_50359_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_059474834.1\|50527_50713_+	barstar family protein	NA	NA	NA	NA
WP_069239470.1\|50764_52303_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.3e-44	35.2
WP_069239471.1\|52418_52637_+	hypothetical protein	NA	NA	NA	NA
WP_080484338.1\|52646_54479_+	LysM peptidoglycan-binding domain-containing protein	Q6A204	Oenococcus_phage	2.4e-05	36.5
WP_155121918.1\|54491_55097_+	hypothetical protein	NA	NA	NA	NA
WP_080484339.1\|55162_55420_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_155121919.1\|55688_55883_-	hypothetical protein	NA	NA	NA	NA
WP_043292613.1\|56659_57094_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011879997.1\|57203_57821_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_069239473.1\|58406_59318_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_080484340.1\|59341_60007_+	DsbA family protein	NA	NA	NA	NA
WP_105819029.1\|60528_61765_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.4e-156	94.7
WP_069239475.1\|62093_63908_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.8e-21	35.1
WP_046429363.1\|64059_64467_+\|transposase	transposase	NA	NA	NA	NA
WP_069239476.1\|64925_66146_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	9.5e-229	93.6

DBSCAN-SWA_2

243615 : 282674

Bacillus_phage(16.67%)

transposase,integrase

attL 250674:250733|attR 277812:278303

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046424735.1\|243615_245313_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_126221107.1\|245409_245814_-	hypothetical protein	NA	NA	NA	NA
WP_126221193.1\|245940_247374_-	TolC family protein	NA	NA	NA	NA
WP_059475418.1\|247405_248824_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_081335145.1\|248835_250731_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	5.7e-39	28.0
250674:250733	attL	NA	NA	NA	NA
WP_155121863.1\|250733_251907_+\|transposase	IS3-like element ISBvi4 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-75	48.9
WP_080484352.1\|252727_253402_-	response regulator transcription factor	NA	NA	NA	NA
WP_080938718.1\|253658_256727_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	2.4e-42	34.1
WP_045579201.1\|258028_258580_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_045579200.1\|258648_259368_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_081335146.1\|259541_261977_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_069246620.1\|262177_263191_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_080484355.1\|263997_264702_+	response regulator transcription factor	NA	NA	NA	NA
WP_069239518.1\|265021_266134_+	EAL domain-containing protein	NA	NA	NA	NA
WP_045579196.1\|267773_268517_-	carbonic anhydrase	NA	NA	NA	NA
WP_069239519.1\|269119_270199_-	linear amide C-N hydrolase	A0A2K9L5Y5	Tupanvirus	2.2e-19	28.9
WP_045579193.1\|270589_270898_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_045579192.1\|270894_271137_+	hypothetical protein	NA	NA	NA	NA
WP_045579191.1\|271723_273190_+	amidohydrolase family protein	NA	NA	NA	NA
WP_155121927.1\|273311_273485_+	hypothetical protein	NA	NA	NA	NA
WP_144410671.1\|273490_273688_+	hypothetical protein	NA	NA	NA	NA
WP_045579190.1\|273986_275624_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_069246621.1\|275853_277545_-\|integrase	tyrosine-type recombinase/integrase	A0A2K9VH72	Gordonia_phage	6.3e-05	30.9
WP_155121928.1\|278342_279430_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.2e-42	35.2
277812:278303	attR	NA	NA	NA	NA
WP_155121929.1\|280301_280694_+	hypothetical protein	NA	NA	NA	NA
WP_069239522.1\|281537_282674_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

288057 : 348751

Burkholderia_phage(16.67%)

transposase,integrase

attL 343951:343968|attR 361501:361518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069239522.1\|288057_289194_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_043291788.1\|289883_290876_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.1e-158	86.0
WP_080484358.1\|290850_291297_+	H-NS histone family protein	NA	NA	NA	NA
WP_059462162.1\|291732_292776_-	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	1.5e-105	52.2
WP_059460904.1\|293977_298363_-	hemagglutinin	NA	NA	NA	NA
WP_043291788.1\|299321_300314_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.1e-158	86.0
WP_045579729.1\|300984_301434_-	hypothetical protein	NA	NA	NA	NA
WP_059460903.1\|301542_302883_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_045579731.1\|303249_303945_-	aquaporin Z	NA	NA	NA	NA
WP_045579732.1\|304040_304553_-	OmpA family protein	NA	NA	NA	NA
WP_144410687.1\|304549_304819_-	hypothetical protein	NA	NA	NA	NA
WP_045579734.1\|304837_305419_-	hypothetical protein	NA	NA	NA	NA
WP_059460901.1\|305445_305775_-	H-NS histone family protein	NA	NA	NA	NA
WP_144410688.1\|305866_306061_-	hypothetical protein	NA	NA	NA	NA
WP_059669414.1\|306057_306813_-	class I SAM-dependent methyltransferase	A0A1V0S9B9	Catovirus	1.2e-35	39.5
WP_045579969.1\|306809_307250_-	hypothetical protein	NA	NA	NA	NA
WP_155121930.1\|307293_307530_-	hypothetical protein	NA	NA	NA	NA
WP_106919390.1\|307650_309519_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_059669413.1\|309563_309875_-	hypothetical protein	NA	NA	NA	NA
WP_045579737.1\|309912_310260_-	hypothetical protein	NA	NA	NA	NA
WP_069239529.1\|310273_311125_-	hypothetical protein	NA	NA	NA	NA
WP_045579738.1\|311129_312272_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_059460898.1\|312268_312895_-	hypothetical protein	NA	NA	NA	NA
WP_059460897.1\|312891_314013_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_045579740.1\|314009_315143_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_045579741.1\|315331_316027_-	OmpA family protein	G3M9Z1	Bacillus_virus	5.6e-08	33.7
WP_155770233.1\|316117_325621_-	hemagglutinin	NA	NA	NA	NA
WP_155121932.1\|325723_326197_-	hypothetical protein	NA	NA	NA	NA
WP_052691595.1\|326241_326949_-	EAL domain-containing protein	NA	NA	NA	NA
WP_045579745.1\|327451_328075_+	recombinase family protein	A0JC18	Ralstonia_phage	1.4e-34	41.4
WP_155121933.1\|328118_329492_+	galactosyl transferase GMA12/MNN10 domain protein	NA	NA	NA	NA
WP_059461598.1\|329464_330877_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	8.4e-19	27.0
WP_106919380.1\|331613_331850_-	hypothetical protein	NA	NA	NA	NA
WP_080484362.1\|332134_332977_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.4e-37	56.3
WP_155121863.1\|334837_336012_-\|transposase	IS3-like element ISBvi4 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-75	48.9
WP_059461596.1\|337205_338162_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_043292673.1\|338145_338967_-	hypothetical protein	NA	NA	NA	NA
WP_059461595.1\|340211_341384_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_059460485.1\|341464_343003_-\|transposase	IS3-like element ISBmu11 family transposase	A0A1B1P773	Bacillus_phage	2.8e-44	35.2
WP_155626177.1\|343100_344298_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	9.4e-104	65.9
343951:343968	attL	NA	NA	NA	NA
WP_155121934.1\|345334_345520_+	hypothetical protein	NA	NA	NA	NA
WP_155121935.1\|345576_346446_+	hypothetical protein	NA	NA	NA	NA
WP_155121936.1\|346577_347945_+	hypothetical protein	NA	NA	NA	NA
WP_059461600.1\|348124_348751_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SFL0	Streptococcus_phage	9.2e-10	28.4
361501:361518	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP013441.1|WP_106919380.1|331613_331850_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP013441.1|WP_106919380.1|331613_331850_-|hypothetical-protein

331613_331850_-

78 aa aa

HTH_Hin_like

Identity	Hit_domain_coverage
NA	NA

288057-348751

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP013441_2	Orphan	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	319600-319639	0
NZ_CP013441_2	Orphan	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	319888-319927	0
NZ_CP013441_2	Orphan	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	320272-320311	1
NZ_CP013441_2	Orphan	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	320623-320662	1
NZ_CP013441_2	Orphan	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	323689-323728	1
NZ_CP013441_2	Orphan	2.1\|322447\|40\|NZ_CP013441\|PILER-CR	322447-322486	40	320368-320407	2
NZ_CP013441_2	Orphan	2.2\|322546\|37\|NZ_CP013441\|PILER-CR	322546-322582	37	320467-320503	0

1. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 319600-319639, mismatch: 0

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtggagag	Protospacer
****************************************

2. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 319888-319927, mismatch: 0

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtggagag	Protospacer
****************************************

3. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 320272-320311, mismatch: 1

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtcgagag	Protospacer
********************************** *****

4. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 320623-320662, mismatch: 1

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgccacattgctgttcgtcgtcgagag	Protospacer
********************************** *****

5. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 323689-323728, mismatch: 1

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacaccacattgctgttcgtcgtggagag	Protospacer
**************.*************************

6. spacer 2.1|322447|40|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 320368-320407, mismatch: 2

aagtcgacagcgacgccacattgctgttcgtcgtggagag	CRISPR spacer
aagtcgacagcgacgcaacattgctgttcgtcgtcgagag	Protospacer
**************** ***************** *****

7. spacer 2.2|322546|37|NZ_CP013441|PILER-CR matches to NZ_CP013441 position: 320467-320503, mismatch: 0

tcgacagcgacgcaacgttgctgtttgtcgtggagac	CRISPR spacer
tcgacagcgacgcaacgttgctgtttgtcgtggagac	Protospacer
*************************************

2. NZ_CP013439

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013439_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013439_1

818905-819012

Orphan

Consensus_repeat	Method
GCGGTAACCCGGCCGGCGCATTGACCGGAGCACTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013439_1

>merge|NZ_CP013439|1|818905-819012|CRISPRCasFinder
GCGGTAACCCGGCCGGCGCATTGACCGGAGCACTCGGCACGGTGACCGGCGCATTGGGCAACGCTGGTGGCGGTAACCCGGCCGGCGCATTGACCGGCGCACTCGGCA

>NZ_CP013439|1|1|818905-819012|CRISPRCasFinder
GCGGTAACCCGGCCGGCGCATTGACCGGAGCACTCGGCA	CGGTGACCGGCGCATTGGGCAACGCTGGTG
GCGGTAACCCGGCCGGCGCATTGACCGGCGCACTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013439.1\|WP_060122187.1\|814678_816118_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP013439.1\|WP_011883496.1\|821526_822318_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP013439.1\|WP_004186709.1\|827556_827727_+\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_CP013439.1\|WP_011883504.1\|824645_826286_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP013439.1\|WP_011883481.1\|813604_814393_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP013439.1\|WP_011883469.1\|805748_806387_-\|2-hydroxychromene-2-carboxylate-isomerase	unknown	unknown	gnl\|CDD\|239320
NZ_CP013439.1\|WP_034194486.1\|817111_817759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225512
NZ_CP013439.1\|WP_004186661.1\|824305_824599_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP013439.1\|WP_059567237.1\|808383_808749_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NZ_CP013439.1\|WP_069246150.1\|811598_813434_+\|peptidase-S1	unknown	unknown	gnl\|CDD\|225490
NZ_CP013439.1\|WP_011883471.1\|806481_807915_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270238
NZ_CP013439.1\|WP_059462536.1\|816230_816965_-\|DsbA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239322
NZ_CP013439.1\|WP_014722546.1\|822765_823398_+\|membrane-protein	unknown	unknown	gnl\|CDD\|379924
NZ_CP013439.1\|WP_059462534.1\|820602_820962_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226765
NZ_CP013439.1\|WP_059462550.1\|822349_822769_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259885
NZ_CP013439.1\|WP_059622092.1\|808900_810991_+\|D-(-)-3-hydroxybutyrate-oligomer-hydrolase	unknown	unknown	gnl\|CDD\|313759
NZ_CP013439.1\|WP_059462533.1\|821011_821527_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP013439.1\|WP_069246149.1\|804734_805679_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NZ_CP013439.1\|WP_011883502.1\|823421_823931_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176866
NZ_CP013439.1\|WP_034194489.1\|826434_827301_-\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574

Protein	Function_ID	Function_description	E-value
NZ_CP013439.1\|WP_060122187.1\|814678_816118_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.40149e-66
NZ_CP013439.1\|WP_011883496.1\|821526_822318_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.02399e-20
NZ_CP013439.1\|WP_004186709.1\|827556_827727_+\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	1.12689e-20
NZ_CP013439.1\|WP_011883504.1\|824645_826286_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP013439.1\|WP_011883481.1\|813604_814393_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.54459e-25
NZ_CP013439.1\|WP_011883469.1\|805748_806387_-\|2-hydroxychromene-2-carboxylate-isomerase	gnl\|CDD\|239320	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).	2.98468e-43
NZ_CP013439.1\|WP_034194486.1\|817111_817759_-\|hypothetical-protein	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	1.11852e-70
NZ_CP013439.1\|WP_004186661.1\|824305_824599_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	2.59054e-54
NZ_CP013439.1\|WP_059567237.1\|808383_808749_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	1.79758e-10
NZ_CP013439.1\|WP_069246150.1\|811598_813434_+\|peptidase-S1	gnl\|CDD\|225490	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism].	2.03035e-126
NZ_CP013439.1\|WP_011883471.1\|806481_807915_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.03074e-30
NZ_CP013439.1\|WP_059462536.1\|816230_816965_-\|DsbA-family-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	2.16562e-83
NZ_CP013439.1\|WP_014722546.1\|822765_823398_+\|membrane-protein	gnl\|CDD\|379924	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein. This is likely to be a family of outer-membrane lipoprotein-sorting proteins.	5.76889e-06
NZ_CP013439.1\|WP_059462534.1\|820602_820962_+\|hypothetical-protein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	1.22135e-37
NZ_CP013439.1\|WP_059462550.1\|822349_822769_+\|hypothetical-protein	gnl\|CDD\|259885	cd04223, N2OR_C, The C-terminal cupredoxin domain of Nitrous-oxide reductase. Nitrous-oxide reductase participates in nitrogen metabolism and catalyzes the last step in dissimilatory nitrate reduction, the two-electron reduction of N2O to N2. It contains copper ions as cofactors in the form of a binuclear CuA center at the site of electron entry and a tetranuclear CuZ centre at the active site. The C-terminus of Nitrous-oxide reductase is a cupredoxin domain.	0.000192454
NZ_CP013439.1\|WP_059622092.1\|808900_810991_+\|D-(-)-3-hydroxybutyrate-oligomer-hydrolase	gnl\|CDD\|313759	pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH). D-(-)-3-hydroxybutyrate oligomer hydrolase (also known as 3HB-oligomer hydrolase) functions in the degradation of poly-3-hydroxybutyrate (PHB). It catalyzes the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers.	0
NZ_CP013439.1\|WP_059462533.1\|821011_821527_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	7.05017e-38
NZ_CP013439.1\|WP_069246149.1\|804734_805679_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.11893e-88
NZ_CP013439.1\|WP_011883502.1\|823421_823931_+\|polyketide-cyclase	gnl\|CDD\|176866	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	8.58257e-68
NZ_CP013439.1\|WP_034194489.1\|826434_827301_-\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.74787e-71

>NZ_CP013439.1|WP_034194486.1|817111_817759_-|hypothetical-protein
MRKKPSPVKDLLLSRYAPIADGIAALFFPYAEVVIHDLHDQTVLYLANNLSKREVGDDSALEEIDHSARERVIGPYEKLNWDGRRMRCVSNVLFDDEGRPAGMMCINFNIAVFDDVRATLDVFIKGAGIVAQPDELFRDDWQERINTFLHGWLRERQVGLNGLTREHRRELVEALYAEGAFRGKSAANYVANVLGMGRATVYKHLKHLKETQGDA
>NZ_CP013439.1|WP_059462536.1|816230_816965_-|DsbA-family-oxidoreductase
MTPLPAPPARPMLTVEIWSDLICPWCWIGKRRFDDALAAFPHAQHVDVVLRAFRLMPGQPVEPVEAMLAGKYRMSAAQVDQMLRQVTDAAASVGLRYDLPGTLVGDTLDAHRVVKLGQATGHAHALTERLYRAYLCEHGALFDHAALTDFAVEAGLERAAVEATLRSDAYRDEVEADVARAAQIGGRGVPLFVFGGRYAVSGAQPVDVFAQALERAWHDGASVAFHGDDAAACGPDGCELPPRA
>NZ_CP013439.1|WP_060122187.1|814678_816118_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MTHGIHGQQRWYALIVLCLGVLMIVLDSTIVNVALPSIGADLHFTGTALVWVVNAYLLTFGGFLLLGGRLGDLYGQRRMFLAGLVVFTLASLACGVAPSQTLLIAARAVQGFGGAVVSAVSLSLIMNLFTEPGERARAMGVYGFVCAGGGSLGVLLGGLLTSTLSWHWIFLVNLPIGIAVYAMCVALLPRVRVPADAARLDVAGALTVTASLMLAVYGIVGGNEAGWLSPQTVGLIGAALALLAAFIAIEARVAHPLMPLTLFAARNVALANVIGVLWAAAMFAWFFLSALYMQRVLGYGPLQVGLAFLPANLIMAAFSLGLSARIVMRCGIRGPIAAGLLIAACGLALFSRAPGDGGFVWHVLPGMTLLGIGAGVAFNPVLLAAMSDVEPADSGLASGIVNTAFMMGGALGLAVLASLAAARTETLAAARAASLDALNGGYHAAFAVGAAFAAAAGLLGLALRIRRQDAMPGVGPAVH
>NZ_CP013439.1|WP_011883481.1|813604_814393_-|sulfite-exporter-TauE/SafE-family-protein
MSLPHIDPLYSLSGLFVGILVGLTGVGGGSLMTPILVLLFGVHPATAVGTDLLYAAATKATGTLVHGLKGSVDWRITGRLAAGSVPAAAVTLWVLHTHGMNSPSTARTIQLVLGVALLLTSLALIFRPQLTALAARNPLAPSPARTLWSTVLTGAVLGVLVSMTSVGAGAIGVTVLLLLYPALATSRIVGSDIAHAVPLTLVAGMGHWLLGSVDWSMLLSLLLGSLPGIVIGSLLSARAPERLLRNLLAATLIAVGVRLVLA
>NZ_CP013439.1|WP_069246150.1|811598_813434_+|peptidase-S1
MTTRKSLKDGFALFGTTLSVPLAAAAAAALLVTGCGGDDGSGPSAATAAAATAANGSTSATTNATAAVPADQPYVDDDVYGTGPDDAVTDSAEGAAVVHRQVAIGGKTIQYTATTGHLTTIDPVTSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGSSSVYLLLGSFGPKRLQSSFPNFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSTAIAPAKNKDFWGTDQDARSIDRFIQRYLTKYSRWNSPKFLFGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGTFPTLAADAFYWKKTTLSPAPTDLDAYMAQARHYADNTLAPLAQKPNPQDGGFVNVRLNLNQRTAQQMGAYLGTDATTLIQTFGNPAALGNVPSSDDNPPYTFFLTLVPGTQIGQYDGRANFTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYIDTDLKYTSTSSFVDLNDQVFNNWDFSHTDPTGANKGGGNTLYTAGDLAATMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPTLKAQNLTIKNYPSGHMIYLNDASRTALKGDLGSFYDGILANRGALQRVLKLQARTLQMKQQQLQQQGQ
>NZ_CP013439.1|WP_059622092.1|808900_810991_+|D-(-)-3-hydroxybutyrate-oligomer-hydrolase
MDTHGWGSRILVGAALAALTMLGACNGDETAERNQLPVFVSGSVRTTAYDGASDDLLTAGLGKTGLASAAAPAFADPSRPTAAELRRVAIWSNYRALVDMSANGGYGRFWGPNVDLDGNDTLGEGKIAGTEYLAYADDGSGRKNVTLLVQVPASFDPAQPCIVTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAQELGSNTVTLIDGTLANAVLAGSASLFTANLTSGDLAAFNSRFPNRYAFKHAHSQQNPEHDWGRATLQSVEFAYWALNQQFAPLVDGSHRGVRYRAGDITTIAASVSNGGGAALAAAEQDTRRWITAVVVGEPQINVRMAPNAVVRESGRPVPSFGRPLADYATLANLLEPCAAASASLAGEPYLSALPLATTQSIRTQRCATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSSAADNLCNFSFATTNAATGAVAAPAASPMPAVFGLGNGVPPTAGINLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVEAVRVNANLQGKPAIIVQGRSDALVPVNHASRAYVAQNSISEGGRSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLKSGAPLPPSQVIRTVPRGGTPGAAPALTSANLPPISTAPGANAIAAGAGAIDVPL
>NZ_CP013439.1|WP_059567237.1|808383_808749_+|BON-domain-containing-protein
MKSIVLRALGVAAVAACLTGSVYAQSSDAAATEAPAAAASSPKAAAKTAKKANRKLGYAVRKAITKAGGVDVANLVVRSKGGAITLEGTVPDQAQIDKAEEAAKSVHGVTSVTNKLTVQQQ
>NZ_CP013439.1|WP_011883471.1|806481_807915_-|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MKPASPRPPRRILARFVAVSWRDLALSIGPTVLLAAAAVWLAVKLIQPAPPSTLVISAGPPGSTYWNAAQKYKAILAKNGITLDVEASEGSAQNLARLSDPNAPVDVGFVQSGIGSKERDEQLVSLGSIGYVPLAIMYRGAVVARLSDFKGKRLALGPQGSGARELSLALLKMNGIVPGGPTELLPIAGEDAATALLDGKIDAAFLSGDSTQIPVMSKLFRAPGVHVYSFTQAEAYARRFPYLTAITLPMGVYDLGRNLPASDIHTVAPTIELVARDTLHPALSDLLIEAAREVHGHATILQHAGEFPSAITRGFPLSDDAARYYKSGKSFLYRRLPFWVASLVDRLLVVVVPLIVVLIPGLRLVPSLYGWRVRSRIYRWYGALIALERRALGEHTADERVHLLEELDDIEEAVNRMKMPLAYAGQFYVLREHIGFVRERLSAHEPDAPARMSDASQPPAAAAPPTAETPRATPGSA
>NZ_CP013439.1|WP_011883469.1|805748_806387_-|2-hydroxychromene-2-carboxylate-isomerase
MTTGLDTAQPAWFYDFVSPFSYLLLEQHDKWPDVPFEPVAVALPDLQRHWGQRPSADVPAKRVFTYRHALFRAEQLGIRFKMPPAHPFDTDKALRLAIAMRADIGTVLEMFRFIWHDGNDPSTPAGFAALCERVGVGHGDELIEFEETSAQLRRNTDDAIALGVFGVPTFWMNQQLFWGEDALPMVLYCARTPNWLESGEVKRISTLPKGRA
>NZ_CP013439.1|WP_069246149.1|804734_805679_-|LysR-family-transcriptional-regulator
MEDDRTASLDIWLVRVLRTLLLERSVTQAALRLNQTQPAISTALRKLRETLNDPILVRGKSGMVPTEYGASLLGAASRALREVDFIATPHGDFEPSSARRTFRVAAPDYLNDFFMPTLIARFRDAAPHAHLEIDSLNPALDHAGALETGALDLVIGNWPKPDPRFARQDLFSDTIVCLMRAAHPLAHEPLTRDAYAAAAHVAPTPYTGDKRNAIEIGLARAQLTRRVVTTLPYFGIVPQVLLQADLIFTTTRRFATHYAQLLPLVVVEPPMPFPRIRSYLLTHPQPDRPTDIAWLCALMQSVSDELTAARVRKR
>NZ_CP013439.1|WP_059462534.1|820602_820962_+|hypothetical-protein
MKTMMVALALTAAIARPAAAEPPQVGDGKLVDEHRMTLYVFDHDAPGKSTCTGACVANWPPALADGYDHAAGPLTLVARDDGSKQWAYRGRPLYRWKMDRKAGDASGDGVGGMWHVARP
>NZ_CP013439.1|WP_059462533.1|821011_821527_+|sigma-70-family-RNA-polymerase-sigma-factor
MSYESDLLVWLPHLTRYARALTGERAWADDLVQDTLERALNRPPRDTANLRAWLLTLLRHRFIDQLRARHEIAVDDATAPWQTMAAPGGEIGGLVLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRVLLSGEPPTHGTAALRVIGKT
>NZ_CP013439.1|WP_011883496.1|821526_822318_+|anti-sigma-factor
MDDEPRTPSHDADETASAQLLSALLDGELSGPERREVLERLRSDPQSADRFAHYGAQRDALHALFPLPPAAPALFVQRRASRRHAAAYAFAGLAAGLLLSVALHAGWTAFGAAPAFAARADAAYAVYALDRDHPVEVGAHDAGDAARLTGWLSARLGRPVRAPALDEYGYALLGGRLLPGDAGPAAQLMYQRADGARVTLYMTAYDARRLAPRALSSQGRHTYFWSDRGIGYALSGDGDERRLRELAIDACGALGGPTDAWKG
>NZ_CP013439.1|WP_059462550.1|822349_822769_+|hypothetical-protein
MNPKILKLLTAGALAAGTALARADATVPTRVPVDADGVQRVTIVGGSYFFRPALVIVRADVPVELTVSAEPGVVPHSFEIDAPQAGIAVHTELATTPRTLRFTPTQPGRFAYYCTHRLLFLRSHRERGMAGVLVVEAAP
>NZ_CP013439.1|WP_014722546.1|822765_823398_+|membrane-protein
MIAALLAASLIGASMTADPVTVAHAHFEQVHSYRATIRSSARSGEHAEIHYAYLKPGFVRMDFVSPHHGAVLAYDPGDGKVRLRPFGEHVPPALTLSPANPLVRDHSGHRVDRSDVGELLRNVQALQQGGATVTEGEETIGGRAALRVTVTGAPAHAVDGVHRYRLWLDADDGFPLKVVSFADGDGEPLETVTLDDVEIDVAFPARFFAP
>NZ_CP013439.1|WP_011883502.1|823421_823931_+|polyketide-cyclase
MAEYRFSTTWRVDAPLAAVWDAIYQVDRWPEWWKGAVRTVELEPGDARGVGALQRYTWKGALPYRLTFDMRVLRVERPRVLAGRASGAIEGDGRWSFRGDGARTVVRYDWHIRTREPWMNWLAPVARPLFTWNHDVVMREGARGLARLLGTTVETDGRTFRPVAGCPDM
>NZ_CP013439.1|WP_004186661.1|824305_824599_+|co-chaperone-GroES
MNLRPLHDRVIVKRLDQETKTASGIVIPDAAAEKPDQGEVLAIGPGKRDDKGAPIALDVKVGDRVLFGKYAGQTVKVDGQELLVMREEDIMAVVNAK
>NZ_CP013439.1|WP_011883504.1|824645_826286_+|chaperonin-GroEL
MAAKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAASIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLTGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMGMDM
>NZ_CP013439.1|WP_034194489.1|826434_827301_-|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MPSNAPPIVLTFGLSDPTGGSGLQADLMTLASMGCHGVSVLTGYTVRDSAACEEVTGLDPDVVAAQARMLLEDMPVAAFKIGAATRAEVVSAIAEVVADYDGVPLVLAPDFTLDDEHVLAADDLRESIADLLAPQTTLLVADHATLIALAQPDGDAEAPNLDAAVSHLLSQGCEYILSSETGSHRLVNTLYGEEGQLREDMWDRSPHRLMGITDTLGAAIAALLANGQEPPEAVREAQEYLYQSVRDAFRPGMGAYLPDRFFWARSNEETDTPRATKVEPVPRTSHRH
>NZ_CP013439.1|WP_004186709.1|827556_827727_+|rubredoxin
MEYKSWMCLICGWIYDEEAGLPEEGIAPGTRWEDVPINWTCPECGARKEDFEMVQI

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Crispr_ID: NZ_CP013439_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013439_2

1549813-1549995

Orphan

Consensus_repeat	Method
CGT----------------------GACCGGCGCGAGCGGGCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013439_2

>merge|NZ_CP013439|2|1549813-1549995|PILER-CR
CGTGACCGGCGCGAGCGGACTCGACGATCCCCCCGATCCCGTTGCGCCGCCGACCGCGCCGGTGACAGTATTCAGCAAGCCCGTGACCGGCGCGAGCGGGTTTGCCCCGCTTGCGCCGCCCGTTGCTCCGCCGAGCGTGCCCGTGACCGTCGACACGAGATTGGTGAGCGGCGCGAGCGGGCT

>NZ_CP013439|2|1|1549813-1549995|PILER-CR
CGTGACCGGCGCGAGCGGACT	CGACGATCCCCCCGATCCCGTTGCGCCGCCGACCGCGCCGGTGACAGTATTCAGCAAGCC
CGTGACCGGCGCGAGCGGGTT	TGCCCCGCTTGCGCCGCCCGTTGCTCCGCCGAGCGTGCCCGTGACCGTCGACACGAGATT
GGTGAGCGGCGCGAGCGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013439.1\|WP_014722933.1\|1545496_1546594_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP013439.1\|WP_011884608.1\|1547250_1547712_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP013439.1\|WP_045579150.1\|1551101_1552691_-\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|374271
NZ_CP013439.1\|WP_011884617.1\|1555698_1557030_+\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP013439.1\|WP_034195570.1\|1558368_1559733_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP013439.1\|WP_106919339.1\|1546730_1547150_+\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP013439.1\|WP_011884619.1\|1557090_1558365_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|349765
NZ_CP013439.1\|WP_014722936.1\|1547878_1549564_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP013439.1\|WP_014722928.1\|1536639_1537131_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013439.1\|WP_014722941.1\|1553352_1553568_+\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_CP013439.1\|WP_059463905.1\|1553656_1554157_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227295
NZ_CP013439.1\|WP_011884602.1\|1539607_1542472_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP013439.1\|WP_069246218.1\|1554689_1555634_+\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NZ_CP013439.1\|WP_046422288.1\|1559725_1560712_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP013439.1\|WP_011884605.1\|1543966_1545397_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP013439.1\|WP_011884600.1\|1537465_1539292_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP013439.1\|WP_011884604.1\|1542607_1543885_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP013439.1\|WP_011884614.1\|1554153_1554597_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP013439.1\|WP_069246219.1\|1560716_1561709_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP013439.1\|WP_011884596.1\|1535046_1536552_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830

Protein	Function_ID	Function_description	E-value
NZ_CP013439.1\|WP_014722933.1\|1545496_1546594_+\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.32279e-174
NZ_CP013439.1\|WP_011884608.1\|1547250_1547712_-\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.07872e-40
NZ_CP013439.1\|WP_045579150.1\|1551101_1552691_-\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|374271	pfam15984, Collagen_mid, Bacterial collagen, middle region. Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.	8.17707e-30
NZ_CP013439.1\|WP_011884617.1\|1555698_1557030_+\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	2.44748e-102
NZ_CP013439.1\|WP_034195570.1\|1558368_1559733_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	2.06411e-158
NZ_CP013439.1\|WP_106919339.1\|1546730_1547150_+\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	9.73208e-26
NZ_CP013439.1\|WP_011884619.1\|1557090_1558365_+\|fimbrial-protein	gnl\|CDD\|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	2.13861e-78
NZ_CP013439.1\|WP_014722936.1\|1547878_1549564_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.76736e-71
NZ_CP013439.1\|WP_014722928.1\|1536639_1537131_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.55681e-24
NZ_CP013439.1\|WP_014722941.1\|1553352_1553568_+\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	9.05604e-15
NZ_CP013439.1\|WP_059463905.1\|1553656_1554157_+\|hypothetical-protein	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.01028e-14
NZ_CP013439.1\|WP_011884602.1\|1539607_1542472_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP013439.1\|WP_069246218.1\|1554689_1555634_+\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	7.49713e-48
NZ_CP013439.1\|WP_046422288.1\|1559725_1560712_+\|pilus-assembly-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	4.60523e-39
NZ_CP013439.1\|WP_011884605.1\|1543966_1545397_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP013439.1\|WP_011884600.1\|1537465_1539292_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP013439.1\|WP_011884604.1\|1542607_1543885_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP013439.1\|WP_011884614.1\|1554153_1554597_+\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	3.96398e-10
NZ_CP013439.1\|WP_069246219.1\|1560716_1561709_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	3.31479e-13
NZ_CP013439.1\|WP_011884596.1\|1535046_1536552_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	7.76271e-104

>NZ_CP013439.1|WP_014722936.1|1547878_1549564_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKSRLDSWMLLLAIAAAGGAHAQTRAAGNPLDSLPQINTPKQGPNVTVQVAPQAPQLQELLSRHLTPSTFQVEGVKSVPFDEISRRFTPLVGKDITIGQLIETANGVTKLYQERGYALSFAFVPAQTFENGVVRITVVEGYVSDVKVTGKPGAMESKIRAIAAHITADRPLRRATFERYVNTFGLLPGVSVKANVPPPQTTDGATTLELAVDRKAFNISTGIDFNHPGVQGLITATENGLTSFGEQLSISALVPPGRDKQTYVAFSGAVPVGSSGLVTRLDASTYRGKPTDNPGLPSTVERTVKNEKLGLSASYPLLLNNQRSLLGTVSGYASHNEDRYQNTITGNSIDTRSQVRVLQMQLDYTSVSAKQVQKLSVNVAKGFNILGASKSQNTTIGGNTTSADSPISLTFVRTGATFTQTNEWPFKIGTSVSLTGQYSPDSLPTSEQISFGSTRYALGYQPGETSGDSGWGASLEVNRAFTPGWTYMKSITPYIAYDMARVYLHTGTPSPSRLSSVGIGVRFTDNRYYSLDLNIAKPVGDAPVESASRSPRVNAAFSYQLN
>NZ_CP013439.1|WP_011884608.1|1547250_1547712_-|DUF2147-domain-containing-protein
MVQLTRPLRALAVAGALLACAAPTFAQADSPVGMWQTIDDSTHAPKALVQIAEDGDGSLSGKVVKGLGANDTPDRRCTACTDERKDQLIKGMTIIKAMKKDGDHWDGGNILDPENGKVYKCKMSLEDGGQKLVVRGYIGVSLLGRSQTWVRAQ
>NZ_CP013439.1|WP_106919339.1|1546730_1547150_+|transposase
MSMTPYRDLTDQEWRSIVPLLPEMKPRTELRGRPLANTRAVLNGVLWVIYSGATWSAMPRRYPSYQTCHRRFKAWHDTGTLMQVMSVLYGEAGVNLCNALSARMRKHCQPDAVAVPDAAVPAYVAHGKRAAADTMELAT
>NZ_CP013439.1|WP_014722933.1|1545496_1546594_+|cell-division-protein-ZapE
MNVNEYYTRELSTRGYQSDPAQRAAVDRLQRCFDEWVEYKGRRSNAFKKLINRPDLPRGVYMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRISKRYRLICFDEFHVSDIADAMILYRLLDRLFDNGVQFVMTSNYDPDDLYPDGLHRDRMLPAIALIKQKLDVLNVDAGVDYRQRTLAQVQMYHTPLGADADRELRRAFAKLAAVPDESPILHIEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSAAVPAEQLYVEGPMANEFARTVSRIVEMQSKEYLEAPRRIVDTSLT
>NZ_CP013439.1|WP_011884605.1|1543966_1545397_+|dihydrolipoyl-dehydrogenase
MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACIEKWKNPAGALKLGGTCLNVGCIPSKALLASSEEFENTSHHLADHGITVDGVKIDVAKMLGRKDAIVEKMTSGIEFLFKKNKITWLKGHGKFTGKTDAGVQIEVSGEGEAEVVTAKNVIIATGSKARHLPNIPVDNKIVSDNEGALRFDSVPKKLAVIGAGVIGLELGSVWRRLGADVTVLEALPAFLGAADEALAKEAAKLFKKQGLDIHLGVKIGDVKTTENGVSIAYTDKDGNAQTLDADRLIVSVGRVPNTDNLGLEAIGLKANERGFIDVDDHCRTAVPNVYAIGDVVRGPMLAHKAEDEGVLVAEVIDGQKPHIDYNCIPWVIYTYPEIAWVGKTEQQLKAEGREIKSGKFPFSINGRALGMNAPDGFVKMIADAKTDELLGVHVIGANASDLIAEAVVAMEFKAASEDIARICHPHPSMSEVMREAALAVDKRSLNS
>NZ_CP013439.1|WP_011884604.1|1542607_1543885_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MAIVEVKVPQLSESVSEATMLQWKKKPGEAVAQDEILIELETDKVVLEVPAPAAGVLAQVLQNDGDTVVADQVIATIDTEAKAGAAQAAAGAAEVQPAAAPAAAAPAAQPAAATASSSAAASPAAAKLLAEKGLSTGDVAGSGRDGRVTKGDALAAGSAPKAAPAAAPAKTAAAKPSLPEVKVPASATTWLNDRPEQRVPMSRLRARIAERLLESQQTNAILTTFNEVNMQPVMDLRAKYKDKFEKEHGVKLGFMSFFVKAAVHALKKFPLVNASIDGNDIVYHGYFDIGIAVGSPRGLVVPILRNADQLSLAEIEKKIAEFGQKAKDGKLSIEEMTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKERPVVENGQIVIRPINYLALSYDHRIIDGREAVLSLVAMKDALEDPARLLLDL
>NZ_CP013439.1|WP_011884602.1|1539607_1542472_+|2-oxoglutarate-dehydrogenase-E1-component
MSDVMKQFQLNSYLFGGNASYVEELYDAYLNNPASVPENWREYFDALQNVPATDGSNANDVAHYPIVESFAERAKANAFIPRESGSNLATARKQVHVQSLISAYRFLGSQWANLDPLKRRERPAIPELEPAFYDFSEGDLDQTYSASNLYFGFDQASLRDIVKGLRDTYCGTIGAEYMYISDPEQKRWWQERLESTRATPAFSADKKKHILNRLTAAEGLERYLHTKYVGQKRFSLEGGESFIAAMDEVVQHAGKSGVQEIIIGMAHRGRLNVLVNTLGKMPADLFAEFEGKHVDDLPAGDVKYHKGFSSDVSTEGGPVHLSLAFNPSHLEIVNPVVEGSAKARMDRRGDDDGLQVLPVQIHGDAAFAGQGVVMETLNLAQTRGYGTHGTLHIVINNQIGFTTSDPRDARSTLYCTDVVKMIEAPVLHVNGDDPEAVVLAIQIAIDYRMQFHKDVVIDIVCFRKLGHNEQDTPAVTQPLMYKKIAQHPGTRALYAEKLVQQGVITAEDADGYVKAYRKAMDDGHHTVDPVLSNYKSKYAVDWVPFLNRKWTDAADTAVPLAELKRLGERITTVPENFKVHPLVERVINDRRNMARGDQPLDWGMGEHLAFASLVASGYAVRLTGQDSGRGTFTHRHAVLHDQNRERWNDGTYVPLQNIAEGQAKFTVIDSVLSEEAVLGFEYGYSTAEPNTLVLWEAQFGDFVNGAQVVIDQFISSGEVKWGRVSGLTMLLPHGYEGQGPEHSSTRIERFLQLCADHNMQVVQPTTPAQIFHLLRRQMIRLFRKPLIIATPKSLLRHKEAVSDLSELAKGSFQPVLGETDGGIDPKKVKRVLACSGRVYYDLVAHRREAKANDVAIIRIEQLYPFAHKQFEAEMKKYEHATEVVWVQDEPQNQGPWFYVEHHLKEGMKEGQKLAYSGRPASASPAVGYYAKHYEQQKALIEGAFGRLKSTSIAK
>NZ_CP013439.1|WP_011884600.1|1537465_1539292_+|translational-GTPase-TypA
MTRALRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQIAERVMDSNDIEKERGITILAKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLKPIVVINKIDRPGARIDWVINQTFDLFDKLGATEEQLDFPIVYASGLNGYASLDPATREGDMRPLFEAILAHVPVRPADPEAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGPEGEVLNRKINQVLSFKGLERVQVESAEAGDIVLINGIEDVGIGATICAVDTPEALPMITVDEPTLTMNFLVNSSPLAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRREGYELAVSRPRVVMQEIDGVKHEPYELLTVDVEDEHQGGVMEELGRRKGEMLDMASDGRGRTRLEYRISARGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVFERRNGVLISQDDGAAVAYALWKLQDRGRMFVKPGDALYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPVQMSLEYAVEFIDDDELVEVTPQSIRLRKRFLKEHERRRASREGAVD
>NZ_CP013439.1|WP_014722928.1|1536639_1537131_-|MarR-family-transcriptional-regulator
MSDSPSQSPVSPLSSYQINDSVGYLMSRVKSVMTNLVTQRTQEELGITGTQASMLFMIAVGKCSTAAELAREYGIDASAVTRLLDRVEKRGLLSRVRSIEDRRVVRLELTDEGRALAERLPPVFRSVLDELLEGFTPEEVGFLKSMLRRILSNYCENAGNSIT
>NZ_CP013439.1|WP_011884596.1|1535046_1536552_-|efflux-transporter-outer-membrane-subunit
MKSSTLSVRAGSCRTAVAAAVAALALAGCANYIGIKSDKQIAPASQFESAQSLPAQGGQWPTLDWASQFGDPQLPKLIDEALQGNPSIAQAQARIAKASSYIESSRSNLMPKAEASYSWTRELYSSNALFPPPYGGQWYSENNVLASASWDLDLWGKNRERLHTAVSQEKAAEADMQQARITLASSVARTYNSLAQLYALRDIAQREITNRQTVGKITDGRVSAGLDTNVERQTARGNIATTQASLSDLDGQITTVRYQLAALLGKGPDRGLQIAAPVMNPSGTVALPGNLPADLVARRPDIVAARWQVEAAMHDVKEAKAEFFPDVNLAAGFGFDAFGWGKFLNFASRQAQFGPAIHLPIFDAGALRAQLKGRYADFDLSVANYNQTLIGALNDVATQVASIRAVDRQMDDAQRALDASTRAYDLAVIRYKAGLSPQLQVLTADSNRLASEQTVTNLKMRRRDMQLALIKALGGGFDATGTRLAAPDAEQQKTQTKQAAN
>NZ_CP013439.1|WP_045579150.1|1551101_1552691_-|collagen-like-triple-helix-repeat-containing-protein
MDIQVIPHGTLRTTMIAATVAAMLSLSACGGSGSISKGISGGSSSGGGDSISTSGGGTSGGTSGSTSGSTSGSTSGSTSGSTSGSTSGSTSGTTSGTSSGTSGTSGVSSNSVGTVLASSGNIVTGVGSTVSGLGTVIAGQSLPGVNPGTTQAAGGIVQSVGGAVTALGNGLGSGLGQLGATANPVGVTVASTGNVVNQLGGAVTQTGNLVTSLGSGPLAPLAPVTGAVGGLVTTVGNAVSGGGTTLSNVLSTGPVQQLTQTVSSAITPITTMVGQTTQTIGTATGLGAPVNTLLGTIGNGLNQGGALIASTGGNPITTGLGNTVSSAGNTVKSVGGLLAGSSGGATNPLAPLTGLVSTVTGTLGGATGGGSGPLAPVTGLVSTVTGALGGAAGGGSGPLAPVTGLVSTVTGALGGATGGSGGPLAPVTGLVSTVTGALGGAAGGGSGPLAPVTGLVSTVTGALGSATGGAAGSGPLAPVTGALSTVTSAAGAPALSGATGTVTNSGSGSNLLAPVTSLIGGLLGGTHGK
>NZ_CP013439.1|WP_014722941.1|1553352_1553568_+|Flp-family-type-IVb-pilin
MKALIKRFLKEETGVTAIEYGLIAGLVAVAIIAGVSSLGGNLNTMFTSIGSCVSSLGGASATVASACKLGS
>NZ_CP013439.1|WP_059463905.1|1553656_1554157_+|hypothetical-protein
MAYFISIGVFLAWAIFVAASDIRYRRIPNSLVFGGMAAAFASALCGASPFGIAPLHALLGMLVGMACLLPFFVARVMGAADVKVFAALGAWCGVHGLLWLWIAASLVACLHALAVLLLTRTPLRALRGRSAPTLALGRYRATPYGACLAIPAALWLVCVATAGGVR
>NZ_CP013439.1|WP_011884614.1|1554153_1554597_+|pilus-assembly-protein
MKRQGRPARYRRQRGATAVEFAIIFPLFFVICYAIICFGMIFVIQQSLTFAASEGARAALNYAPDLATRTSKAQSAAQTVVGWLNISAPSVTVQAPACKYDATLYCLSVTVSYSPRAWVTTMPFLGTIVTQPLTSTAVVQISQSLLQ
>NZ_CP013439.1|WP_069246218.1|1554689_1555634_+|Flp-pilus-assembly-protein-CpaB
MANNVTKIIAGLLIAIAVLLGFYAWMLGRSASHSVPAQPAVAANPAPVVIATRTLPAGQPIAADAVKLQAIASVPTGAVVDPATVVGRVPARDIPASAPITPDALVSGLAEDIQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGAMFDGEVSQTQARLLMSKVRVLSFGDATPERDSGSTTNGSNGQPSNARIAVLAVPTAQVDALTLGEATGRLTLALRNPRDDELAMQTVAVRTDNKLSPSALAAAGVSLQQLSGTQRNAAAANVNVPPLPSHLPPAVRSAAGATGSGGSIEVIRGGRSETVAY
>NZ_CP013439.1|WP_011884617.1|1555698_1557030_+|type-II-and-III-secretion-system-protein-family-protein
MKNTLTAFAMALWALTFASMASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTTNVMVWERGHDEPTVWNVEVVDAAAQAVLDASTPQVKAYGGTSVLRGTAGSLDAHERAVAVAKNMSPKGAVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYNGGSGPGTAAYIPTLGAPVASAFNLVVNAAGHGIFADLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVPSPQGLGSTAIQWKQYGVGLSLTPTVLSPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPATPGELAEQHDGPVWRSYLGGAASPDAAPGFSK
>NZ_CP013439.1|WP_011884619.1|1557090_1558365_+|fimbrial-protein
MNARIESLCEPAVTDYFVCASQKEAHVRWLADTLVSAGAVEAASLEPGVLAQRITGLNPALVFVDFSASSDAASIAVAAIRAAHPGLPIVALGSLAQPESTLAALRAGVRDFIDVSAPAEEALRTTRGLLSNVGEPASRHGKVVALLGARAGMGVSTLAANLAVWLQKHALGPGAKDQHGGSTPAGRQTALVDLGLPAGDGALFLNTRCEFHFIDAVQNLRRIDRTFVNTALTRHQSGVALTTLPPDLGGLRDVSYAACVGLLNRFRAFFDQQVVDLGGFSNRDFVTQIAASADEAWLVCDQGVASIVSAADLLTGLRDAGIDTDRVKLVVNQYDPALDLMPAQIAERLGLSLVGTLPARRVAIGHAANQGRLIVDAAERDPYVRALESLAVRLPGISGTAGASRAAPRLSALKRFIQPSSKRS
>NZ_CP013439.1|WP_034195570.1|1558368_1559733_+|CpaF-family-protein
MAHDIQFADGAAPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAIAEALTKELAGFGPIEDLLADPAVEDILINGYNDVYVSRHGMLAKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPIVSIRKFRKDPLKPSDLLGNGTYNEEIGALLEAAVEARCNVLVSGGTSSGKTSLLNALAFHIPEPERVVTIEDTAELSLNHPHVVRLESRPGGFDGSGVVTIRDLLRNTLRMRPDRIIVGEVRGGEVLEMLQAMNTGHDGSMGTVHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAIDFIVQIGRLSNGRRRILSITEVTGLSDNIIATQELYRYEARVTPEGEEVDHWESLGIHPHSPKLARFRQTLSGGAAGGGFGGGFGGGGFGRGGGFNV
>NZ_CP013439.1|WP_046422288.1|1559725_1560712_+|pilus-assembly-protein
MYSAMVWVLAVAMLCVASALMLWRHAETRRVRTDAKRFIDSRLEPGARAPAQPAAASAGARTASPSGVARGAMAEAFWVQWYASAAEYLANLVNRAGIEGARGKAIGALAVLLAIAGLATHRAGVLAGLAALVCGGAMFGVWLASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTSEEPLRGCLDHVSRMLRSGVEIDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLAFLAQVAGSLWLYRMARLR
>NZ_CP013439.1|WP_069246219.1|1560716_1561709_+|type-II-secretion-system-F-family-protein
MTAAQIGSIALALGALGVLLLGMAALLRASAASRAERALADALERRMAALEAARTRAAPDDGAGAQQVARGRERIERMLSRLAAAGMRLLDTGFGKHIVAEEDRRLLEQCGYVDARTRGLFLSARIVCGITVPLLFAILASGRMKGGYWTIGMFAAFSVGFMLPKLYVQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAMLRDRIGRLTVKMTGVMVVTLLPALLIVTAGPGLLAVMRALAVHH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	175761-175790	5	0.833
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1079785-1079814	5	0.833
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	223423-223452	5	0.833
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	223552-223581	5	0.833
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	786510-786539	8	0.733
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1386732-1386761	8	0.733
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	225944-225973	8	0.733
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	226529-226558	8	0.733
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	269207-269236	8	0.733
NZ_CP013439_1	1.1\|818944\|30\|NZ_CP013439\|CRISPRCasFinder	818944-818973	30	NZ_CP048428	Rhizobium daejeonense strain KACC 13094 plasmid unnamed4, complete sequence	45382-45411	9	0.7

1. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 5, identity: 0.833

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
cggtgaccggcgcatagggcaatgccgatt	Protospacer
*************** ******.**.*.*

2. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 5, identity: 0.833

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
cggtgaccggcgcatagggcaatgccgatt	Protospacer
*************** ******.**.*.*

3. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 5, identity: 0.833

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
cggtgaccggcgctctgggcaacgtcggcg	Protospacer
************* .*********..**.*

4. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 5, identity: 0.833

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
cggtgaccggcgctctgggcaacgtcggcg	Protospacer
************* .*********..**.*

5. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.733

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
gcgtgaccggcgctttgggcaacgcccaac	Protospacer
  *********** ***********. .

6. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.733

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
gcgtgaccggcgctttgggcaacgcccaac	Protospacer
  *********** ***********. .

7. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
cgctgaccggcggattgggcaacgacacgc	Protospacer
** ********* *********** ..

8. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
cgctgaccggcggattgggcaacgacacgc	Protospacer
** ********* *********** ..

9. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 8, identity: 0.733

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
gagcgaccggcgcattgcgcaacgccgcgc	Protospacer
 .*.************* *******.*

10. spacer 1.1|818944|30|NZ_CP013439|CRISPRCasFinder matches to NZ_CP048428 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

cggtgaccggcgcattgggcaacgctggtg	CRISPR spacer
gtacgctcggcgcattgggcaatgctggcc	Protospacer
  ..* .***************.*****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

409508 : 452831

Pseudomonas_phage(25.0%)

integrase,plate,protease,transposase

attL 407602:407619|attR 443724:443741

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
407602:407619	attL	NA	NA	NA	NA
WP_014722317.1\|409508_410015_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.1e-21	52.0
WP_069239089.1\|410284_411502_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.9e-89	43.0
WP_155121891.1\|412117_414997_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.0e-71	35.2
WP_069239087.1\|415109_415436_-	hypothetical protein	NA	NA	NA	NA
WP_009908645.1\|415445_415793_-	hypothetical protein	NA	NA	NA	NA
WP_006765346.1\|415785_415998_-	hypothetical protein	NA	NA	NA	NA
WP_069239086.1\|415990_416293_-	hypothetical protein	NA	NA	NA	NA
WP_111442231.1\|416285_416462_-	hypothetical protein	NA	NA	NA	NA
WP_069239085.1\|416822_417101_-	hypothetical protein	NA	NA	NA	NA
WP_080484275.1\|417097_417319_-	AlpA family phage regulatory protein	E5E3Y1	Burkholderia_phage	7.9e-09	55.8
WP_124259945.1\|417435_418227_-	hypothetical protein	NA	NA	NA	NA
WP_124259946.1\|418368_419832_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_124259947.1\|419828_420581_-	hypothetical protein	NA	NA	NA	NA
WP_069239083.1\|420897_421473_+	recombinase family protein	A0A219Y912	Aeromonas_phage	1.6e-24	42.6
WP_155121890.1\|421666_425185_+	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	8.8e-25	22.6
WP_124259949.1\|425351_425897_+	hypothetical protein	NA	NA	NA	NA
WP_069239080.1\|426182_427190_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_155121889.1\|427335_427590_-	hypothetical protein	NA	NA	NA	NA
WP_155121863.1\|427736_428910_+\|transposase	IS3-like element ISBvi4 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-75	48.9
WP_069239078.1\|429582_429933_+	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_124259951.1\|430768_431422_-	hypothetical protein	NA	NA	NA	NA
WP_069246124.1\|431792_432593_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_124259952.1\|432618_432909_-	hypothetical protein	NA	NA	NA	NA
WP_069246125.1\|432907_436087_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	8.4e-59	27.4
WP_059460809.1\|440753_441179_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_011883097.1\|441719_442049_+	hypothetical protein	NA	NA	NA	NA
WP_059606722.1\|443404_444640_-\|transposase	IS110 family transposase	NA	NA	NA	NA
443724:443741	attR	NA	NA	NA	NA
WP_014722338.1\|445373_445691_+	hypothetical protein	NA	NA	NA	NA
WP_011883100.1\|445783_446566_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011883101.1\|446562_447909_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011883102.1\|448011_448623_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011883103.1\|448997_449633_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011883104.1\|449687_450203_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011883105.1\|450218_451709_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011883106.1\|451779_452283_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011883107.1\|452345_452831_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

742495 : 751755

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883357.1\|742495_744448_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	7.0e-149	50.1
WP_011883359.1\|744704_745841_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.2e-22	27.2
WP_069246144.1\|745845_747963_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.2e-48	33.1
WP_014722488.1\|748079_748895_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.7e-35	32.5
WP_014722489.1\|748942_749629_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	3.6e-07	29.5
WP_034194455.1\|749625_750168_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_011883369.1\|750201_751755_-	polynucleotide adenylyltransferase PcnB	A0A1B0V011	Roseobacter_phage	1.7e-17	27.6

DBSCAN-SWA_3

1005566 : 1014005

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069246169.1\|1005566_1006967_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.3e-76	37.7
WP_011883831.1\|1006974_1007925_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	2.6e-16	28.5
WP_069246370.1\|1007988_1008981_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	5.9e-27	30.9
WP_034194143.1\|1009054_1009402_+	competence protein ComE	NA	NA	NA	NA
WP_011883837.1\|1009607_1010510_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.8e-52	39.9
WP_011883839.1\|1010591_1011815_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_069246170.1\|1011985_1012909_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	1.3e-41	35.2
WP_014722686.1\|1013033_1014005_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	8.6e-23	28.5

DBSCAN-SWA_4

1594547 : 1687218

103

Burkholderia_phage(28.57%)

protease,terminase,portal,head,tRNA,capsid,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034193042.1\|1594547_1595312_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_011884676.1\|1595323_1595869_-	NUDIX hydrolase	NA	NA	NA	NA
WP_046427114.1\|1596319_1596817_+	heme-degrading domain-containing protein	NA	NA	NA	NA
WP_011884680.1\|1596820_1597159_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_069246222.1\|1597189_1598350_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_014722967.1\|1598469_1598898_-	hypothetical protein	NA	NA	NA	NA
WP_155754033.1\|1598904_1599174_+	hypothetical protein	NA	NA	NA	NA
WP_069246223.1\|1599239_1600397_+	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_014722970.1\|1600413_1601223_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_014722971.1\|1601219_1602185_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.2e-30	38.5
WP_006400187.1\|1602240_1602456_+	transporter	NA	NA	NA	NA
WP_011884695.1\|1602599_1602797_+	hypothetical protein	NA	NA	NA	NA
WP_011884697.1\|1602852_1603107_+	hypothetical protein	NA	NA	NA	NA
WP_011884699.1\|1603195_1604230_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_069238800.1\|1604491_1605613_-	hypothetical protein	NA	NA	NA	NA
WP_155121860.1\|1605609_1605942_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_059723449.1\|1605854_1606562_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	7.1e-35	44.3
WP_155121859.1\|1606597_1606837_+	hypothetical protein	NA	NA	NA	NA
WP_069238798.1\|1606857_1607388_-	hypothetical protein	NA	NA	NA	NA
WP_069238795.1\|1610735_1611002_-	acyl carrier protein	A0A1P8VVJ5	Erythrobacter_phage	2.2e-05	37.9
WP_069239398.1\|1611324_1611828_-	hypothetical protein	NA	NA	NA	NA
WP_081335133.1\|1612100_1612916_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_131929090.1\|1613361_1613631_+	hypothetical protein	NA	NA	NA	NA
WP_069246224.1\|1613857_1614088_+	hypothetical protein	NA	NA	NA	NA
WP_155121858.1\|1614089_1614257_+	hypothetical protein	NA	NA	NA	NA
WP_034193061.1\|1614388_1614835_+	hypothetical protein	Q3HQZ3	Burkholderia_phage	5.1e-63	77.7
WP_069238792.1\|1614835_1615531_+	hypothetical protein	A0A1V1FD44	Vibrio_phage	3.8e-41	43.6
WP_155121857.1\|1615527_1615704_+	hypothetical protein	NA	NA	NA	NA
WP_069238791.1\|1615714_1616536_+	hypothetical protein	Q6JIG3	Burkholderia_virus	2.7e-70	56.2
WP_069239396.1\|1616547_1617540_+	helix-turn-helix domain-containing protein	Q8W6P0	Burkholderia_virus	4.4e-107	67.1
WP_155121907.1\|1617740_1618100_+	DUF1064 domain-containing protein	A4JX56	Burkholderia_virus	7.3e-28	57.7
WP_059495995.1\|1618099_1618447_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_069238788.1\|1618443_1618800_+	DUF4406 domain-containing protein	H2BD42	Pseudomonas_phage	4.7e-27	53.8
WP_059461701.1\|1618796_1619051_+	hypothetical protein	NA	NA	NA	NA
WP_155714834.1\|1619083_1619521_+	DUF1364 family protein	Q6JIF7	Burkholderia_virus	3.2e-62	80.9
WP_131929091.1\|1619505_1619820_+	hypothetical protein	NA	NA	NA	NA
WP_034193070.1\|1619816_1620062_+	hypothetical protein	Q3HR04	Burkholderia_phage	8.5e-12	46.9
WP_059461704.1\|1620116_1620695_+	hypothetical protein	Q3HR05	Burkholderia_phage	3.1e-20	35.4
WP_069238787.1\|1620801_1621149_+	hypothetical protein	A2I2Y8	Vibrio_virus	5.8e-30	63.2
WP_080484318.1\|1621230_1621491_+	HNH endonuclease	NA	NA	NA	NA
WP_059495983.1\|1621604_1622087_+\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	7.5e-36	60.3
WP_059723478.1\|1622090_1623746_+\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	1.5e-232	71.6
WP_059568126.1\|1623742_1625101_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	1.7e-53	36.3
WP_069238784.1\|1625094_1625841_+\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	1.2e-48	55.3
WP_059461710.1\|1625935_1627192_+\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	4.0e-105	53.4
WP_034193077.1\|1627255_1627534_+	hypothetical protein	NA	NA	NA	NA
WP_069238783.1\|1627537_1628212_+	hypothetical protein	NA	NA	NA	NA
WP_051974403.1\|1628208_1628541_+\|head	phage head closure protein	NA	NA	NA	NA
WP_051974404.1\|1628533_1628935_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_034193184.1\|1628980_1629619_+	hypothetical protein	NA	NA	NA	NA
WP_034193080.1\|1629658_1630081_+	hypothetical protein	NA	NA	NA	NA
WP_155770210.1\|1630140_1630374_+	hypothetical protein	NA	NA	NA	NA
WP_080484224.1\|1630366_1630807_+	hypothetical protein	A0A1W6JP15	Morganella_phage	6.4e-10	32.2
WP_155121855.1\|1630799_1633643_+\|tail	phage tail tape measure protein	Q6JIL8	Burkholderia_virus	3.9e-55	34.6
WP_069238781.1\|1633643_1633985_+\|tail	phage tail protein	C7BGC9	Burkholderia_phage	5.7e-30	57.3
WP_080484223.1\|1633981_1635472_+\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_059694698.1\|1635468_1636149_+\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	1.6e-95	73.6
WP_059694696.1\|1636195_1636939_+	C40 family peptidase	A4JX14	Burkholderia_virus	3.3e-107	72.1
WP_069238779.1\|1636942_1637518_+\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	7.2e-70	68.7
WP_069246226.1\|1637519_1640912_+\|tail	phage tail protein	A4JX16	Burkholderia_virus	0.0e+00	64.2
WP_080484221.1\|1641222_1641939_+	hypothetical protein	C7BGD6	Burkholderia_phage	7.9e-90	65.5
WP_034193187.1\|1641980_1642193_+\|holin	holin	Q3HQU8	Burkholderia_phage	2.0e-17	65.7
WP_069238777.1\|1642185_1642683_+	lysozyme	Q3HQU9	Burkholderia_phage	2.2e-75	83.6
WP_069246227.1\|1642682_1643171_+	DUF2514 family protein	Q3HQV1	Burkholderia_phage	8.3e-59	79.0
WP_059694685.1\|1643302_1644121_+	hypothetical protein	Q3HQV2	Burkholderia_phage	4.7e-46	43.2
WP_059461727.1\|1644217_1644472_-	hypothetical protein	NA	NA	NA	NA
WP_069246228.1\|1644550_1645237_+	hypothetical protein	Q8W6R8	Burkholderia_virus	7.5e-98	73.0
WP_080484219.1\|1645268_1646093_-	TIR domain-containing protein	K7PLZ9	Enterobacterial_phage	2.1e-62	58.4
WP_080484218.1\|1646866_1647784_-	hypothetical protein	NA	NA	NA	NA
WP_034193189.1\|1648242_1649682_+	PAS domain S-box protein	NA	NA	NA	NA
WP_011884706.1\|1649761_1650226_-	hypothetical protein	NA	NA	NA	NA
WP_014722976.1\|1650838_1651582_-	DUF695 domain-containing protein	NA	NA	NA	NA
WP_011884709.1\|1651702_1652011_+	hypothetical protein	NA	NA	NA	NA
WP_069246229.1\|1652281_1652755_+	VOC family protein	A0A2K9L1J4	Tupanvirus	9.0e-18	36.8
WP_011884713.1\|1652856_1653828_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_046427098.1\|1654056_1654272_+	hypothetical protein	NA	NA	NA	NA
WP_085954464.1\|1654432_1655122_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.6e-18	35.7
WP_046427095.1\|1655292_1656345_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA
WP_069246230.1\|1656848_1657988_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_011884723.1\|1657984_1659043_+	membrane protein	NA	NA	NA	NA
WP_085954482.1\|1659192_1659678_+	hypothetical protein	NA	NA	NA	NA
WP_046427088.1\|1659726_1660560_-	nodulation protein NodJ	NA	NA	NA	NA
WP_046427138.1\|1660566_1661481_-	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	8.4e-28	27.6
WP_011884727.1\|1661806_1662304_+	universal stress protein	NA	NA	NA	NA
WP_045579133.1\|1662415_1663123_-	DUF2939 domain-containing protein	NA	NA	NA	NA
WP_011884731.1\|1663152_1663491_-	hypothetical protein	NA	NA	NA	NA
WP_011884733.1\|1663517_1664165_-	transcriptional repressor LexA	F1C5A6	Cronobacter_phage	2.1e-09	42.3
WP_085954484.1\|1664483_1665467_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014722988.1\|1665613_1666501_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
WP_014722989.1\|1666497_1667445_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
WP_014722990.1\|1667458_1668517_+	sulfate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.9e-29	35.1
WP_011884743.1\|1668597_1669524_+	CysB family HTH-type transcriptional regulator	NA	NA	NA	NA
WP_014722991.1\|1670055_1671006_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011884749.1\|1671169_1672783_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-08	25.6
WP_011884751.1\|1672779_1673799_+	ABC transporter permease	NA	NA	NA	NA
WP_046427082.1\|1673834_1674866_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.8e-34	30.8
WP_034193103.1\|1674862_1675789_+	ribokinase	NA	NA	NA	NA
WP_069246376.1\|1676064_1677858_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-08	41.8
WP_011884759.1\|1678387_1680310_+	PrkA family serine protein kinase	NA	NA	NA	NA
WP_011884761.1\|1680435_1681704_+	YeaH/YhbH family protein	A0A219UQP6	Bacillus_phage	4.9e-10	38.1
WP_014722998.1\|1681700_1683380_+	SpoVR family protein	NA	NA	NA	NA
WP_011884766.1\|1683627_1684932_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.0
WP_069246377.1\|1685286_1687218_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_5

1974843 : 2035955

Burkholderia_virus(14.29%)

integrase,protease,transposase

attL 1975470:1975529|attR 2035946:2037267

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155121847.1\|1974843_1975197_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1975470:1975529	attL	NA	NA	NA	NA
WP_106919311.1\|1975519_1976756_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_155770212.1\|1976781_1977447_+	hypothetical protein	NA	NA	NA	NA
WP_069238691.1\|1977607_1977877_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_080484207.1\|1978090_1980316_+	hypothetical protein	A0A1B2AQ05	Phage_Wrath	1.2e-40	30.6
WP_155121845.1\|1980530_1980686_+	hypothetical protein	NA	NA	NA	NA
WP_060043247.1\|1980792_1981119_+	hypothetical protein	NA	NA	NA	NA
WP_069238688.1\|1981136_1981409_-	hypothetical protein	NA	NA	NA	NA
WP_069238687.1\|1982166_1982739_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_059463330.1\|1982959_1983799_-	TrmB family transcriptional regulator	NA	NA	NA	NA
WP_045579018.1\|1983916_1984282_+	RidA family protein	NA	NA	NA	NA
WP_155121844.1\|1984278_1985616_+	MFS transporter	NA	NA	NA	NA
WP_069238686.1\|1985709_1986255_+	aspartate carbamoyltransferase	NA	NA	NA	NA
WP_059461299.1\|1986451_1987843_-	hypothetical protein	NA	NA	NA	NA
WP_069238685.1\|1988067_1990335_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_069246383.1\|1991116_1993246_+	hypothetical protein	NA	NA	NA	NA
WP_011885057.1\|1993329_1994730_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.4e-18	31.4
WP_060081884.1\|1995042_1996221_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_059474451.1\|1996264_1996897_-	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L2K0	Tupanvirus	4.4e-20	36.0
WP_069246255.1\|1996942_1999027_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_069246256.1\|1999213_2000857_-	fatty-acid--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	2.2e-23	23.4
WP_046426917.1\|2001032_2002601_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	4.3e-56	31.7
WP_011885063.1\|2002639_2003071_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_014723160.1\|2003195_2003726_+	septation protein A	NA	NA	NA	NA
WP_069246257.1\|2003727_2004036_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_011885066.1\|2004054_2004837_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_046426919.1\|2004979_2005519_-	N-acetyltransferase	NA	NA	NA	NA
WP_069246258.1\|2005518_2009583_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	2.6e-222	91.9
WP_060121385.1\|2009909_2011211_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011885070.1\|2011264_2012803_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_034195347.1\|2012914_2014537_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_011885072.1\|2014601_2015315_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-32	41.1
WP_059734864.1\|2015313_2015991_+	arylesterase	NA	NA	NA	NA
WP_046426930.1\|2016149_2018084_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_011885075.1\|2018772_2021196_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.7e-224	53.2
WP_011885076.1\|2021393_2022665_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.5e-133	58.5
WP_011885077.1\|2022826_2023480_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.4e-53	54.9
WP_059568337.1\|2023620_2024967_-	trigger factor	NA	NA	NA	NA
WP_059463339.1\|2025392_2026538_+	glycerate kinase	NA	NA	NA	NA
WP_011885080.1\|2026600_2027053_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_069246259.1\|2027275_2028274_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_034195339.1\|2028624_2028855_+	membrane protein	NA	NA	NA	NA
WP_124259636.1\|2029089_2029275_+	hypothetical protein	NA	NA	NA	NA
WP_034195338.1\|2030886_2031123_+	hypothetical protein	NA	NA	NA	NA
WP_069238675.1\|2031196_2031394_+	hypothetical protein	NA	NA	NA	NA
WP_124259635.1\|2031413_2031629_-	hypothetical protein	NA	NA	NA	NA
WP_041493845.1\|2031726_2031990_-	hypothetical protein	NA	NA	NA	NA
WP_069238674.1\|2032021_2033197_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.9e-94	46.1
WP_155121843.1\|2033378_2034720_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.4e-71	51.4
WP_106919311.1\|2034717_2035955_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
2035946:2037267	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2875157 : 2919740

Acinetobacter_phage(40.0%)

integrase,protease,transposase

attL 2868550:2868567|attR 2925547:2925564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2868550:2868567	attL	NA	NA	NA	NA
WP_011886023.1\|2875157_2875919_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_034194787.1\|2876056_2876872_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_081056107.1\|2876988_2877339_-	hypothetical protein	NA	NA	NA	NA
WP_046424016.1\|2877383_2878100_-	3-oxoacyl-ACP reductase FabG	A0A0N9R355	Chrysochromulina_ericina_virus	1.2e-10	25.7
WP_011886027.1\|2878208_2878469_-	acyl carrier protein	NA	NA	NA	NA
WP_014723648.1\|2879072_2879717_+	membrane protein	NA	NA	NA	NA
WP_069246323.1\|2879769_2881548_+	AMP-binding protein	NA	NA	NA	NA
WP_014723650.1\|2881544_2882519_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_059897541.1\|2882548_2883211_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_069246324.1\|2883207_2885742_+	MMPL family transporter	NA	NA	NA	NA
WP_069246325.1\|2885738_2886632_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_046424018.1\|2886695_2887925_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_011886035.1\|2887921_2888740_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_014723655.1\|2888736_2889264_+	hotdog family protein	NA	NA	NA	NA
WP_011886037.1\|2889260_2889581_+	hypothetical protein	NA	NA	NA	NA
WP_011886038.1\|2889949_2890150_-	hypothetical protein	NA	NA	NA	NA
WP_069246326.1\|2890249_2890993_-	acetoacetyl-CoA reductase	NA	NA	NA	NA
WP_041493836.1\|2891219_2892401_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_011886040.1\|2892708_2893290_-	TIGR01841 family phasin	NA	NA	NA	NA
WP_011886041.1\|2893741_2894506_-	ParA family protein	NA	NA	NA	NA
WP_069239286.1\|2895184_2897371_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_069239285.1\|2897367_2899152_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_069239284.1\|2899572_2901228_-	hypothetical protein	NA	NA	NA	NA
WP_155121901.1\|2901499_2905198_-	hypothetical protein	NA	NA	NA	NA
WP_155121863.1\|2905229_2906403_+\|transposase	IS3-like element ISBvi4 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-75	48.9
WP_069239279.1\|2909100_2910171_-	hypothetical protein	NA	NA	NA	NA
WP_080484309.1\|2910315_2911302_-	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	5.4e-41	37.2
WP_069239278.1\|2911282_2911588_-	helix-turn-helix transcriptional regulator	E5E3S9	Burkholderia_phage	6.4e-17	46.9
WP_069239277.1\|2912878_2913169_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_155121863.1\|2913554_2914728_+\|transposase	IS3-like element ISBvi4 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-75	48.9
WP_069239276.1\|2914925_2916599_-\|integrase	integrase	NA	NA	NA	NA
WP_080484308.1\|2916921_2918544_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_069239275.1\|2918540_2919740_-\|integrase	site-specific integrase	NA	NA	NA	NA
2925547:2925564	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013441

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. NZ_CP013439

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection