CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP013445	Burkholderia ubonensis strain MSMB1189WGS chromosome 3, complete sequence	0 crisprs	NA	0	0	0
NZ_CP013446	Burkholderia ubonensis strain MSMB1189WGS chromosome 1, complete sequence	0 crisprs	csa3,cas3,Cas14u_CAS-V,DEDDh,RT,DinG,PD-DExK	0	0	5
NZ_CP013447	Burkholderia ubonensis strain MSMB1189WGS chromosome 2, complete sequence	2 crisprs	Cas14u_CAS-V,cas3,csa3,DinG,PD-DExK	2	2	4

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

190250 : 221842

Burkholderia_phage(74.19%)

plate,tail,holin,integrase,transposase

attL 183670:183689|attR 197459:197478

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
183670:183689	attL	NA	NA	NA	NA
WP_060092462.1\|190250_191276_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_059530884.1\|191574_192456_-	cytochrome c5 family protein	NA	NA	NA	NA
WP_069269774.1\|192835_193912_-\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	3.5e-174	85.5
WP_080403289.1\|193779_194229_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080413459.1\|194238_194598_-	hypothetical protein	NA	NA	NA	NA
WP_069269775.1\|194594_197387_-	hypothetical protein	E5E3N5	Burkholderia_phage	0.0e+00	92.5
WP_059586359.1\|197390_197654_-	hypothetical protein	E5E3N6	Burkholderia_phage	1.5e-17	63.9
197459:197478	attR	NA	NA	NA	NA
WP_010095912.1\|197856_198105_-	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	5.9e-37	91.5
WP_010095910.1\|198229_198445_-	hypothetical protein	E5E3U1	Burkholderia_phage	2.0e-20	81.4
WP_155123057.1\|198571_199027_+	transcriptional regulator	E5E3U2	Burkholderia_phage	5.4e-44	62.9
WP_060106460.1\|199396_199693_+	hypothetical protein	E5E3U3	Burkholderia_phage	2.7e-12	50.5
WP_060106462.1\|199824_200904_-	phage late control D family protein	K4PAY4	Burkholderia_phage	1.3e-133	72.7
WP_059530902.1\|200900_201356_-\|tail	phage tail protein	K4NXK5	Burkholderia_phage	6.8e-39	62.0
WP_069269776.1\|201385_203938_-	hypothetical protein	A4JWS3	Burkholderia_virus	1.7e-150	46.9
WP_010095898.1\|203953_204067_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	1.8e-09	81.1
WP_059897886.1\|204075_204459_-\|tail	phage tail assembly protein	A4JWS5	Burkholderia_virus	7.8e-28	64.8
WP_010095894.1\|204528_205032_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	4.8e-70	74.3
WP_069269777.1\|205066_206239_-\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	1.0e-187	82.5
WP_069269778.1\|206298_206928_-\|tail	tail assembly chaperone	E5E3V1	Burkholderia_phage	1.1e-90	85.8
WP_060199750.1\|206943_208443_-	hypothetical protein	E5FFH1	Burkholderia_phage	2.1e-129	53.0
WP_060199748.1\|208449_208992_-\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	7.3e-72	72.6
WP_060199746.1\|208984_209899_-\|plate	baseplate assembly protein	E5FFH3	Burkholderia_phage	2.0e-122	73.9
WP_059609406.1\|209895_210258_-\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	5.4e-39	66.7
WP_042586752.1\|210254_210938_-\|plate	phage baseplate assembly protein V	E5E3V6	Burkholderia_phage	1.2e-76	67.3
WP_155123058.1\|210942_211350_-	hypothetical protein	NA	NA	NA	NA
WP_069269780.1\|211569_212148_-	hypothetical protein	NA	NA	NA	NA
WP_069269781.1\|212151_213075_-	hypothetical protein	A4JWL8	Burkholderia_virus	5.7e-24	33.6
WP_059717646.1\|213071_213638_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	5.9e-40	58.0
WP_069269782.1\|213630_214542_-\|plate	baseplate assembly protein	E5FFH3	Burkholderia_phage	2.2e-73	49.2
WP_069269783.1\|214538_214994_-\|tail	phage tail protein	E5E3V9	Burkholderia_phage	8.9e-31	55.7
WP_010095869.1\|214986_215157_-	hypothetical protein	K4PAX1	Burkholderia_phage	1.4e-10	61.5
WP_060265275.1\|215110_215551_-	protein lysB	K4NXJ2	Burkholderia_phage	1.2e-16	45.9
WP_059955887.1\|215547_216378_-	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	2.5e-95	67.7
WP_045566864.1\|216381_216648_-\|holin	phage holin family protein	E5E3W3	Burkholderia_phage	1.6e-24	66.3
WP_010095861.1\|216649_216994_-	membrane protein	A4JWU2	Burkholderia_virus	6.7e-39	79.6
WP_042586759.1\|217009_217216_-\|tail	tail protein	E5E3W5	Burkholderia_phage	1.1e-20	72.1
WP_069270644.1\|217638_218109_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_059955892.1\|218298_219873_+	TIGR04222 domain-containing membrane protein	NA	NA	NA	NA
WP_069269785.1\|220171_221842_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.8e-21	33.2

DBSCAN-SWA_2

446993 : 489801

uncultured_Caudovirales_phage(42.86%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042582960.1\|446993_447503_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.2e-20	48.6
WP_059592487.1\|447668_447950_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_059592488.1\|447953_448271_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	6.9e-14	46.9
WP_080485625.1\|448501_448807_-	hypothetical protein	NA	NA	NA	NA
WP_059808466.1\|448880_449222_-	helix-turn-helix transcriptional regulator	Q0H244	Geobacillus_phage	2.8e-05	40.5
WP_155123062.1\|449677_450253_-	hypothetical protein	NA	NA	NA	NA
WP_060138940.1\|450534_452406_-	hypothetical protein	NA	NA	NA	NA
WP_069269831.1\|453058_453610_+	hypothetical protein	NA	NA	NA	NA
WP_069269832.1\|453683_454235_+	hypothetical protein	NA	NA	NA	NA
WP_029226620.1\|454437_454689_+	hypothetical protein	NA	NA	NA	NA
WP_059879975.1\|455072_455276_+	hypothetical protein	NA	NA	NA	NA
WP_045566772.1\|455370_456171_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_069269833.1\|456481_459640_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-54	27.8
WP_069269834.1\|464276_464888_+	hypothetical protein	NA	NA	NA	NA
WP_155123136.1\|468070_469414_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_155123137.1\|469368_470010_+	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	5.5e-26	64.0
WP_155123063.1\|469924_470440_+	hypothetical protein	NA	NA	NA	NA
WP_155123064.1\|471400_471829_+	hypothetical protein	NA	NA	NA	NA
WP_069272334.1\|471866_472196_+	hypothetical protein	NA	NA	NA	NA
WP_059958899.1\|472254_472494_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_080409491.1\|472567_472909_-	helix-turn-helix transcriptional regulator	Q0H244	Geobacillus_phage	9.7e-06	35.4
WP_155123065.1\|473132_473336_+	hypothetical protein	NA	NA	NA	NA
WP_059808492.1\|473425_473689_+	hypothetical protein	NA	NA	NA	NA
WP_063802372.1\|473757_473943_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_059808498.1\|473994_474177_+	hypothetical protein	NA	NA	NA	NA
WP_155123066.1\|474187_474478_+	hypothetical protein	NA	NA	NA	NA
WP_059822949.1\|474650_476480_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.8e-13	43.9
WP_069269835.1\|476625_476949_+	hypothetical protein	NA	NA	NA	NA
WP_059705640.1\|476997_477588_+	hypothetical protein	NA	NA	NA	NA
WP_071751899.1\|478143_478557_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_060094388.1\|478942_479335_+	hypothetical protein	NA	NA	NA	NA
WP_059740816.1\|479351_479729_+	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_069269836.1\|479786_480566_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_059716606.1\|480562_481909_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_059536587.1\|482011_482623_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_059672524.1\|482997_483639_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_059716608.1\|483682_484210_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_059536578.1\|484225_485716_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_010096526.1\|485784_486288_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_069269837.1\|486350_486836_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_069269838.1\|486901_488737_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_069269839.1\|488700_489801_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_3

1982425 : 2047061

Hokovirus(12.5%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060093842.1\|1982425_1983463_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_071733294.1\|1983833_1984163_-	hypothetical protein	NA	NA	NA	NA
WP_059611737.1\|1985022_1985262_-	hypothetical protein	NA	NA	NA	NA
WP_010101057.1\|1985717_1986008_+	glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_010113445.1\|1986042_1986312_+	glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_006024228.1\|1986350_1986617_+	glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_006024227.1\|1986676_1986949_+	glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_010101052.1\|1987037_1987229_+	hypothetical protein	NA	NA	NA	NA
WP_059611736.1\|1987234_1987768_+	hypothetical protein	NA	NA	NA	NA
WP_059469335.1\|1987817_1988165_+	hypothetical protein	NA	NA	NA	NA
WP_059627205.1\|1988208_1989309_+	hypothetical protein	NA	NA	NA	NA
WP_059469337.1\|1989305_1989623_+	hypothetical protein	NA	NA	NA	NA
WP_059627204.1\|1989619_1989985_+	hypothetical protein	NA	NA	NA	NA
WP_059761010.1\|1990202_1992122_+	hypothetical protein	NA	NA	NA	NA
WP_059627208.1\|1992175_1992832_+	DUF1906 domain-containing protein	NA	NA	NA	NA
WP_059627203.1\|1992882_1993566_+	DUF1906 domain-containing protein	NA	NA	NA	NA
WP_059760898.1\|1993576_1995148_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_059611721.1\|1995617_1996340_+	response regulator transcription factor	NA	NA	NA	NA
WP_059760896.1\|1996303_1998508_-	response regulator	A0A1V0SGX0	Hokovirus	7.9e-40	31.1
WP_069270214.1\|1998590_1999613_+\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	2.0e-38	31.8
WP_155123104.1\|2000098_2001278_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-54	40.4
WP_155123105.1\|2001705_2002523_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_042584123.1\|2002730_2004323_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	5.3e-54	27.3
WP_069270217.1\|2004489_2006736_-	AsmA family protein	NA	NA	NA	NA
WP_069270218.1\|2006898_2007597_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	9.9e-05	24.1
WP_069270219.1\|2007593_2008397_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_069270220.1\|2008414_2008885_-	hypothetical protein	NA	NA	NA	NA
WP_059486546.1\|2009017_2009569_-	hypothetical protein	NA	NA	NA	NA
WP_059918605.1\|2009726_2010743_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_069270221.1\|2010868_2011822_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069270222.1\|2012049_2012895_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_069270223.1\|2012967_2014164_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_059476913.1\|2014278_2014845_-	hypothetical protein	NA	NA	NA	NA
WP_069270224.1\|2014864_2016055_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA
WP_069270225.1\|2016120_2017047_-	sugar kinase	NA	NA	NA	NA
WP_059527439.1\|2017050_2018412_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_069270691.1\|2018698_2020399_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_080485655.1\|2020668_2022033_+	insulinase family protein	NA	NA	NA	NA
WP_060226569.1\|2022029_2023376_+	insulinase family protein	NA	NA	NA	NA
WP_155123106.1\|2023834_2024146_+	hypothetical protein	NA	NA	NA	NA
WP_080414511.1\|2024503_2024743_+	hypothetical protein	NA	NA	NA	NA
WP_010092275.1\|2025130_2025694_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
WP_059527430.1\|2025814_2026555_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_069270693.1\|2026660_2027842_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_069270226.1\|2027941_2029807_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_059644909.1\|2030174_2031014_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_059630039.1\|2031020_2032226_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_042584142.1\|2032267_2033092_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_069270227.1\|2033160_2035407_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	2.8e-77	29.5
WP_010092269.1\|2035462_2035678_-	YdcH family protein	NA	NA	NA	NA
WP_059867106.1\|2035756_2036515_-	hypothetical protein	NA	NA	NA	NA
WP_069270228.1\|2036680_2039008_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_042584146.1\|2039102_2041022_-	potassium transporter Kup	A7J6G4	Paramecium_bursaria_Chlorella_virus	5.8e-79	32.7
WP_059478987.1\|2041278_2041869_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_042584148.1\|2041875_2043222_-	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	6.9e-71	36.8
WP_059713604.1\|2043335_2044484_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_010092260.1\|2044581_2044773_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_059478998.1\|2044809_2045709_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_059958119.1\|2045723_2047061_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA

DBSCAN-SWA_4

2348513 : 2355624

Burkholderia_phage(33.33%)

integrase

attL 2339488:2339501|attR 2354282:2354295

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2339488:2339501	attL	NA	NA	NA	NA
WP_059527990.1\|2348513_2349305_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.6e-11	26.9
WP_069270700.1\|2349307_2351395_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.3e-12	32.8
WP_069270302.1\|2351968_2353207_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	3.8e-108	49.2
WP_069270303.1\|2353286_2354369_-	DUF3396 domain-containing protein	E5E3X8	Burkholderia_phage	1.1e-111	55.0
2354282:2354295	attR	NA	NA	NA	NA
WP_069270304.1\|2354374_2355106_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	7.1e-62	51.7
WP_069270305.1\|2355102_2355624_-	PAAR domain-containing protein	E5E3Y0	Burkholderia_phage	4.0e-43	54.4

DBSCAN-SWA_5

3620307 : 3650257

Staphylococcus_phage(25.0%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060092462.1\|3620307_3621333_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_042586555.1\|3621448_3622636_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.2e-122	61.0
WP_042586556.1\|3622902_3623787_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA
WP_059587760.1\|3623808_3624111_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_155123133.1\|3624148_3624289_-	hypothetical protein	NA	NA	NA	NA
WP_059625899.1\|3624422_3624689_-	Killer protein	NA	NA	NA	NA
WP_045567010.1\|3625057_3625927_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_059477238.1\|3625961_3626684_+	DUF484 family protein	NA	NA	NA	NA
WP_059717320.1\|3626692_3627613_+	tyrosine recombinase XerC	A0A166YH27	Gordonia_phage	1.0e-12	31.3
WP_060137886.1\|3627692_3628901_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_071732970.1\|3628982_3630137_+	GTP-binding protein	NA	NA	NA	NA
WP_010090354.1\|3630612_3631029_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_042586564.1\|3631249_3631786_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_059876474.1\|3631796_3633140_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.0e-42	29.2
WP_069270612.1\|3633233_3635312_-	hypothetical protein	NA	NA	NA	NA
WP_060154315.1\|3635558_3636677_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010090351.1\|3636820_3637363_-	response regulator transcription factor	NA	NA	NA	NA
WP_059717325.1\|3637398_3638772_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_010090349.1\|3638860_3639085_-	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_010090348.1\|3639403_3640303_+	acetylglutamate kinase	NA	NA	NA	NA
WP_060154314.1\|3640299_3641094_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_060154313.1\|3641060_3641738_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_069270613.1\|3641779_3644452_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	3.9e-73	31.0
WP_155123134.1\|3644528_3644849_+	hypothetical protein	NA	NA	NA	NA
WP_080485683.1\|3644938_3645964_+	TagK domain-containing protein	NA	NA	NA	NA
WP_069270614.1\|3645944_3646805_+	ImpE protein superfamily protein	NA	NA	NA	NA
WP_059538683.1\|3646788_3647310_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_069270615.1\|3647311_3649192_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059538665.1\|3649195_3650257_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013447

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013447_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013447_1

569453-569734

Orphan

Consensus_repeat	Method
GGANGACGTACCCGAGGA	CRT

6 spacers

The CRISPR arrays of NZ_CP013447_1

>merge|NZ_CP013447|1|569453-569734|CRT
GCCTGAGGTGCCCGAGGACGTGCCTGAGGACGTACCGGAAGACGTACCCGAGGACGTACCCGAGGACGTGCCGGAAGATGTGCCGGAAGATGTGCCGGAGGACGTACCCGAGGACGTGCCGGAGGACGTACCCGAAGACGTGCCGGAGGACGTACCCGAAGACGTGCCGGAAGACGTGCCGGAGGACGTACCCGAGGACGTACCCGAGGATGTGCCCGAGGACGTACCGGAAGACGTACCCGAGGATGTGCCGGAGGACGTACCCGAGGACGTACCCGAGGA

>NZ_CP013447|1|1|569453-569734|CRT
GCCTGAGGTGCCCGAGGA	CGTGCCTGAGGACGTACC
GGAAGACGTACCCGAGGA	CGTACCCGAGGACGTGCCGGAAGATGTGCCGGAAGATGTGCC
GGAGGACGTACCCGAGGA	CGTGCCGGAGGACGTACCCGAAGACGTGCC
GGAGGACGTACCCGAAGA	CGTGCCGGAAGACGTGCC
GGAGGACGTACCCGAGGA	CGTACCCGAGGATGTGCCCGAGGACGTACC
GGAAGACGTACCCGAGGA	TGTGCCGGAGGACGTACC
CGAGGACGTACCCGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013447.1\|WP_080485718.1\|562143_562659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_059958811.1\|564963_565401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_069270930.1\|566790_568074_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP013447.1\|WP_069270935.1\|574518_576525_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372641
NZ_CP013447.1\|WP_059989864.1\|570808_571795_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP013447.1\|WP_060135314.1\|556779_557226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_069270929.1\|565419_566217_-\|histone-acetyltransferase	unknown	unknown	unknown
NZ_CP013447.1\|WP_059955573.1\|579208_580186_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|274926
NZ_CP013447.1\|WP_155123182.1\|563009_563636_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_069270932.1\|571823_573425_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP013447.1\|WP_069270934.1\|573858_574506_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013447.1\|WP_069270936.1\|577447_578404_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013447.1\|WP_069270928.1\|557902_562144_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP013447.1\|WP_155123183.1\|563726_564353_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP013447.1\|WP_059852824.1\|578530_579175_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198315
NZ_CP013447.1\|WP_042587169.1\|570373_570772_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
NZ_CP013447.1\|WP_060135311.1\|557413_557887_+\|DUF1795-domain-containing-protein	unknown	unknown	gnl\|CDD\|370123
NZ_CP013447.1\|WP_059805076.1\|576987_577260_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP013447.1\|WP_155123184.1\|564442_564826_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP013447.1\|WP_069270933.1\|573421_573769_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235628

Protein	Function_ID	Function_description	E-value
NZ_CP013447.1\|WP_069270930.1\|566790_568074_-\|hypothetical-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	0.00621174
NZ_CP013447.1\|WP_069270935.1\|574518_576525_-\|hypothetical-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	7.45851e-15
NZ_CP013447.1\|WP_059989864.1\|570808_571795_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.0951e-27
NZ_CP013447.1\|WP_059955573.1\|579208_580186_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	2.22338e-20
NZ_CP013447.1\|WP_069270932.1\|571823_573425_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.38237e-135
NZ_CP013447.1\|WP_069270934.1\|573858_574506_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.20883e-09
NZ_CP013447.1\|WP_069270936.1\|577447_578404_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.88504e-69
NZ_CP013447.1\|WP_069270928.1\|557902_562144_+\|hypothetical-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	8.50766e-36
NZ_CP013447.1\|WP_155123183.1\|563726_564353_+\|hypothetical-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	0.00012838
NZ_CP013447.1\|WP_059852824.1\|578530_579175_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|198315	cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	1.01249e-47
NZ_CP013447.1\|WP_042587169.1\|570373_570772_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	6.66345e-39
NZ_CP013447.1\|WP_060135311.1\|557413_557887_+\|DUF1795-domain-containing-protein	gnl\|CDD\|370123	pfam08786, DcrB, DcrB. DcrB is a bacterial protein required for phages C1 and C6 adsorption. It may be involved in the opening or formation of diffusion channels in the outer membrane. Structurally, it consist of an antiparallel beta sheet with some alpha helical regions.	4.51107e-44
NZ_CP013447.1\|WP_059805076.1\|576987_577260_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.47328e-10
NZ_CP013447.1\|WP_155123184.1\|564442_564826_+\|hypothetical-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	0.000222877
NZ_CP013447.1\|WP_069270933.1\|573421_573769_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235628	PRK05855, PRK05855, SDR family oxidoreductase.	5.70767e-16

>NZ_CP013447.1|WP_069270930.1|566790_568074_-|hypothetical-protein
MNSTLEGISAVQDRPPHSATPLRAGLLGITAGLFALWITRDQPALDGATRAVIASLAIIGTIALHELFISRVYLRPSAGLSRQAVRPLSAARVAVRLGALASVYAGIGMLYWLLPEYHGAFYLPFWSLLRALAPYVIVAAPIYFAWMDRHQRETDDAYLLWGRFLFRGEQPASWRPVREMLAGWMVKAFFLPLMTVYLSKDADHLSASLANAMHAPMSLALFVFMYDLSFTMDLMFGTVGYLCTFRVLDSHVRTVEPTTLGWLAALICYQPFWSLISDNYIRYEGSMFWDNWLLCAPAIRVAWGATIIALLLCYALSTISFGLRFSNLTNRGIITSGPYRFTKHPAYITKNLSYWMISVPFVEPLGWQVALAHCAALVAVNLIYFLRAKTEERHLMRDPDYRAYAAWIAEHGLFARIRRVFGQQQAG
>NZ_CP013447.1|WP_069270929.1|565419_566217_-|histone-acetyltransferase
MRIDVQHCQNSIDDELDTLHARLHQPGHRLHGLPAVALGASGLIVRHREADGEYFLYVEDPATRQLAGYTVFNRLPEIPRRADRYLRAPHSKFRASFQRKGLATTLYRWGLDAGLCLISGARQSVGAARLWTMLAREYRHGFVDIEGRELRYLGECVSDDVHGALHTRRLLLGTGWTMGEFAEVVGMTDGPAIAHDRSVRTSARWPEWPVRVPPNGDAPDARSIVPGASTIVAKQSGAASRRQAGPGHDCRAFQTESPIRLRKDT
>NZ_CP013447.1|WP_059958811.1|564963_565401_+|hypothetical-protein
MPLLLLRNFDCAREVLQYATDHGPKALVTHDPARQPDRGYFTVVDGHYYGVFASATGPVAFRDAQQWMLCENQVLTEMKLLPDGRKRFVVTIRNERVLDVVYQPSGIVVDNWSDDERMIDFFAWLRDGMSSGALGQFVSFYTLSA
>NZ_CP013447.1|WP_155123184.1|564442_564826_+|hypothetical-protein
MRADIFVPTVSVDEQVRFYVKELRLFVVSQDYGMGEILLRHIDCPSFCLQLQPNRSPSGDWPIFCMTTEDCRSEFARLSVVAFQKGGLVPDAGAGAQPYEYPLGQTISLRDASGNLFLITEWHPSAL
>NZ_CP013447.1|WP_155123183.1|563726_564353_+|hypothetical-protein
MALLLLRSFDRTTEILRNEVDGRSQALAASDSAQLLSRGYFTSADGRLDTCRRVGQRVDAVIAAQAATADAAVRLEARVPAMSGAELKNIVFVPSKSTEESVEFYVNELALFEVADDLGRGNVFLRYIRSEDFYLMLSLELGVREGDAPIFSVWVDDCFGEYNRLKGFDFKSGAEILSNPGFVEWPLGKFLKIRDPAGNVFDLSEWYV
>NZ_CP013447.1|WP_155123182.1|563009_563636_+|hypothetical-protein
MDARFYVVQYRQGEFGCPHFLSGAVNRDEWEWSMYVGDPFSVAVEHDYIYQLADSKDSVDFDFYGSQTNFVSEQFLQVCDAMKVRYRAIPLRITCDGKDVGDKRYSIFLPAERAALLDRSSSEFLEDRDMESGEIAENNLFPGTPMYSWIKRFVPRDDCTSALFRSVEIMELVCNEKFKEAAERAVLKGIEFIPIDSNYIYDPWGEAS
>NZ_CP013447.1|WP_080485718.1|562143_562659_+|hypothetical-protein
MLLDSVKIDVDFNGIVIFSYPDLMNFFADPVVNGQNILSDFTQTDLGDKVVDGGVVLPIINIDDGGYLVRFFEGDPESSVRRRVVFSDSGYVLKIDGDLYIADAAVFWDWGEYLGWTKVAIPRGYYSVKIEGVQHISDDGSVGSIGYDVIVNRVEDLPKRTAQIRQDSRVS
>NZ_CP013447.1|WP_069270928.1|557902_562144_+|hypothetical-protein
MFEAARVTDPIEHTSALAGFLIGAVIGVALIAAVAFATFTCGFGVALLAGLVAGVGAGAILSLGEAIGKMFSSPSGAIVTGSANVFINGKPAAYATLSGTACDKHNPVPLVAQGSTNVFINGRPAARKDDKITCGAAIGDGSHDTFIHGGTETYLPVDDEVPPWLRTTVDWAFALAGLVGGLAGLVKAAGGLSRAVLPCAAKFIGGFVLGEAVGRYVAGPAINRAIGGMFGNPVDVTTGRKILLAESETDYVIPAPLPVAIRRFYSSGLDHVGTLGRGWVLPWDLRLQARDGRLWYTDAQGRESGFPLVRNGQSSFSESEQRYLTCTPDGRYVLHDVGETYYDFGRLDPDTDRIAWVRRIEDQAGQWTQFERDSQGRVREILTCGGIQAVLDYEAVHGRLATVTLVHGDERRLAVAYGYDDNGQMASVTDANGAVVRRFAYADGLMTSHTNALGFVSSYKWAAIGGQPRVVATQTSEGEHWTFEYDLDARESRVRHLDGRSARWRYDAQFQVVECTDLDGAQYRIEYNDAGRPIAFMLPGERKVALEYDDAGRIVAETDPLGRTTRTRYDGNSLRPVEITAPDGGVWQAEYDRQGRLLLSRDPLGRINRYEYPDGLTSQPAAHVDARGGRKALAWNRLGQLVAYTDCSGKTTRSEFDAFGLPVATENALGQRVSYAMRPTGEPVRIAYPDGSEESFEYDAAGLVVRHVGLGGRIRQSIRNARGQLREAIDPAGRRLVYRYDAEGRLFELLNDHARYAFAYDAGGRLLSETRPDGVKRRFAYDDAGGLRELTIVGAADDANRRDAQAVRVLRFERDLMGNLTAQHTPTDVTRYERDAGDRLLAVERTPTDAGVALGIEPDAVRFEYDKGGRLIAEHGVNGTVGYALDELDNVSTLSLPHEQTLQMLRYGSGHVHQIRCGDQVVSDFERDDLHREILRTQGRLVERSGYDLLGRKLWQAAGLSPETTGRMRGQLWRNYGYDAAGELTEMSDSLRGSTQYSYDPAGRLMRQYRTADRHLEEFAWDAAGNLLDDGQRRSRGYVEGNRLRMWQDLRFAYDAFGNLATKQQGPNRTQRFGYDGQDRLIAVRTEDASGVVEARFEYDPLGRRTAKTETCFDHRGVELRAERKRFVWEGLRLAQEIRETGVSSYVYSPDAPYTPAARVDAVIADAVAAVAIDEAKHAARVYHFHTDLVGAPLEVTDEAGEVAWAGRYSAWGKVDAGDRQLAAPRIEQPLRYAGQYADDSTGLHYNTFRFYDPDVGRFVNQDPIGLGGGNNLYAYVPNPVSWIDPLGWMPWPWNPNGMGHHLIPRGKANSIGLDALGTERNTPTFFPDPYEAGMHEELHRAIKGDVGKLQGPWTGTAEELFEATSKGLDSVSHIKGDLRIPATGEVLATNVTPKQAHAKLVDWFKSKKGGGC
>NZ_CP013447.1|WP_060135311.1|557413_557887_+|DUF1795-domain-containing-protein
MTDPDNRIRIHEGSITLPDGFEDRTTNLFVPADPANQPNLSVARDWLKDGETLAPYVDRQLALLKSRLQGHKLIARQAERLGPDDHRALAGERIDASHRNGTRVVFQRQAAFIVAPGRVLIFTASSARAFNDELDASWRTWLDGYRPADETGEAGLA
>NZ_CP013447.1|WP_060135314.1|556779_557226_+|hypothetical-protein
MTQSTMTLWQAIDALALQVPFSKAKVEHALSTRLTATDEEGNDVFQFFKSTPVTLTDGVVIKNVDLRVKRQGAHPGFMVLELGGPCVGLDAVRARYSHLEITDVPRGRSLEEATTHSAQLPWGQLSFGFEERNPACLATVSFKPKKQD
>NZ_CP013447.1|WP_042587169.1|570373_570772_+|4-carboxymuconolactone-decarboxylase
MSEQDKEQGKARRIDVMGEAFVERAMRDLDGFSRPLQDWLNEHAWGSTWQRGGIDLKTRSLCTCAMLAALGRGTELKGHVRGALNNGASLVEIREVLLHSALYAGAPAAVEAFRNAREVISELGLTLPDSED
>NZ_CP013447.1|WP_059989864.1|570808_571795_-|alpha/beta-fold-hydrolase
MSHTIHLIQQALIAVAAVCAALAAFTWYIAHRVTRAFRPEGRFVDIGGDRIHYVEYGSGPPIVFVHGLAGQLRNFAYLPLQQLAERHRVILIDRPGAGHSLRGARSQANIFAQARTIAAFIDALQLDKPVLVGHSLGGAISLAVGLNHPEHVSRLALIAPLSHLEAEPPGPFRPLLIPSKLVRRFVSWTFAIPLTILTGRKAVRAVFAPEAVPNDFPVKGGGLLGLRPRSFYATASDLIAVPGDLPAMERRYAELALPVDVLYGRDDRILNWRSHGEALAQKSPRVRLRVVDGGHMLPVTIPGATAEWLAEVAAAPLEAHAPVAQAGR
>NZ_CP013447.1|WP_069270932.1|571823_573425_-|NAD(P)/FAD-dependent-oxidoreductase
MTPTTTDRRAAPPAFDRHASAGGTRRDGADLDVLIVGAGLSGIGAAYHLQQRCPFARVAILEARDAIGGTWDLFRYPGVRSDSDMFTLGYSFRPWHGDKAISDGQTILDYIRDTARTYGIDKTIRYRHKVVGADWDSNRARWTVRVERGGGSDAPAETLALTCRFLYMCSGYYDYDAGYLPDWPGKDTFGGDLVHPQHWPKNLSYADRRVIVIGSGATAVTLVPSMAAEARHVTMLQRSPTYIVSLPARDRIANALRRMLPARLAHRLVRVKNVLLTMYLYNLARRKPEATKKLIIRAAGKQLGPDFDVATHLTPRYKPWDQRVCLVPNGDLFKAIRAGRASIVTDEIERFTPTGLRLKSGQRLDADVIVTATGLKVKMLGGAQVTVDGSAIDLSQTVSYKGMMYSDVPNLASSFGYTNASWTLKAELIARYVCRLLNHMRAHDYDTCVPRLAPGDLGNVPAVNLSSGYIQRAAGILPKQGEKKPWKFHQNYVLDLASLKFSTLADSAMRFERRAKPDACAASVPQPALDTRA
>NZ_CP013447.1|WP_069270933.1|573421_573769_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKGFSGKVAAITGAGSGMGRSLAVELARRGCEVALSDVNDVGLAGTAAACSRYGVRVTTQRLDVADARRLDRIARVLGAAYQLLMIRHVRRARTRNLQRAHAPGARPTPPTKDLA
>NZ_CP013447.1|WP_069270934.1|573858_574506_+|TetR/AcrR-family-transcriptional-regulator
MSNSGMEKVLKTQKRGRAYGGVAPEVRAAERRDTLIRAATRVFGTVGFRKATVRSICQEAKLNDRYFYAAFDSTEDLLRCTYLHHAEQLRDAVAQAVAARGGDLDARVDAGLAAFFAFLRDPCAARVLLLEVMGVSLDTDATYQRVLVEFGKLIMAIGGRGEAVAGPERTEQWLIGLALVGAMTNVGTAWLLTEYRDPEAQMIASCRKVLLGTLG
>NZ_CP013447.1|WP_069270935.1|574518_576525_-|hypothetical-protein
MATEEYPVEVQSDFLEKMTRAKPISALSELVWNAFDADAKNVDISFEYNDLDTLDTIIVKDDGEGIPRAEAAGFFRSLGGSWKKSRTQTSGGRFLHGQEGRGRFKAFALGSDAEWAVVYKRDGKFWSYTIRMSALDIRHVRISDETKAKDATDTGVTLTIRNALKDFRTFTTEDGREELTEVFALYLADYEDTKIVLDGRAIDPGSAITDKKSFPLSDIEIDGKAYWARLQVVEWKSAGNRALYLCNQQRFPLVQVDRRFHIGQFQFSGYLHSPYFDQAQMEGTVDLAEMQPAVLSTIAEAQQTIKDHFRSRAAKEARTVVEEWKDEEVYPFSGDPATAVEKVERQVFDIVAVNIARHLPDFRTTQSKTKAFQLRMLRQAIERSPEDLQVILDEVLRLPKRQQEELAQLLRNTSLSSIIGAAKVVSDRLKFLSGLEAVLFDPEPKKRLKERTQLHRIIADNCWLFGEEFALSVDDQSLTMALVEHKKLLGSEVVIDEPVKHISQMRGIIDLMLSRATKQHRANQLTHLVVELKAPKVKIGSDEVTQIQGYAFSVMSDPRFDKVGVTWNFWVISDTLDRYTEHLVQDETGVILSKPNVNIYAKTWAQVLDENRARLKFFQDHLNVQVDREASLQYLQERYAAYLEGVFEESNDATAPVAEEDTAGTTSE
>NZ_CP013447.1|WP_059805076.1|576987_577260_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKFPTRVKPISYLKSHAAEIVKEISESREPMLITQNGDAKLVVMDVKSYEEREVTLALLKLLALGNREIEQGHFRAVEDVFTELDEDGER
>NZ_CP013447.1|WP_069270936.1|577447_578404_-|LysR-family-transcriptional-regulator
MADLRDVNLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLAVTDAGRAFYDACRDIMRATESALNAVSSETGPLRGTLRVSAPIDYGAQVVAPAIVALRDAHPALDVELIANDRLVDLVADNIDVAIRIGRLADSNYRAVQLGEYEKWPVASPAFVARWGLPRDPAALAALPFVMLSTLPRPQTFELESARGGKASVRCTAHVVSNTATACRAIALAGGGFGLLTDFSIADDVAAGRLVRLLPGWRSPPAGIHAIFPSTRLPSPKVRAFIEAMREKIGAAPVRATRGRSTKSKRASG
>NZ_CP013447.1|WP_059852824.1|578530_579175_+|glutathione-S-transferase-family-protein
MPVAEKPSVPIRVYSFPLSGHAHRVRLFLSLLGVPFEVVDVDLAAGEQRRPAFLALNPFGQVPVIDDGGVVLSDSNAILVYLAKRYGDAHWLPDDPAGAAAVQRWLSLAAGPIAAGPAAARLVTVFGAPLDHEQAKRIAVRLFDAIDAEFAKQPFAAGARPTIADIAAYTYIAHAPEGGVSLDPYPHLRAWLARVEALPGFVGMPPTRAGLLAA
>NZ_CP013447.1|WP_059955573.1|579208_580186_+|pyridoxamine-5'-phosphate-oxidase
MTAPTVAPPGWELDVSPFHAGELAVQQRVGVADAASAVGLRGIRRFMPDQHRAFFAQLPFFVLGGVDPEGQPWATLRTGAPGFATSPDAHTLRIAGDTLPGDPLADAWRPGAPLGGLGIQFDTRRRNRVNGVVQAVDGSNALTVAVEQSFGNCAKYIQSRTPVFDPRGDAAPPRLERSARLSDADRALLAQADTFFVASANLSAEAGAARGVDVSHRGGMPGFVRVDDDATLTTPDFSGNRLFNTLGNLLLDPRAGLLFVDFERGDLVHVAARAEIVWDGPLVASFEGAQRVVRYRVQEVRRGVAVMPFRWSPVEWAPQFRVRLA

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Crispr_ID: NZ_CP013447_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013447_2

2620087-2620182

Orphan

Consensus_repeat	Method
CGACACGCCGCCGTTGATCGTGCC	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NZ_CP013447_2

>merge|NZ_CP013447|2|2620087-2620182|CRISPRCasFinder
CGACACGCCGCCGTTGATCGTGCCCGAGTTGGTAAACGTATTGCCCTGCCCGGGCGTGCCGTTCGAGCCGAACGACACGCGGCCGTTGATCGTGCC

>NZ_CP013447|2|1|2620087-2620182|CRISPRCasFinder
CGACACGCCGCCGTTGATCGTGCC	CGAGTTGGTAAACGTATTGCCCTGCCCGGGCGTGCCGTTCGAGCCGAA
CGACACGCGGCCGTTGATCGTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013447.1\|WP_080426150.1\|2626961_2627366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_059534758.1\|2621537_2622572_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP013447.1\|WP_059718684.1\|2605369_2606230_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP013447.1\|WP_059803331.1\|2627551_2627932_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_059481569.1\|2613620_2615840_-\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
NZ_CP013447.1\|WP_069271557.1\|2625256_2626387_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP013447.1\|WP_060020247.1\|2606885_2607932_+\|DUF1016-domain-containing-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_CP013447.1\|WP_059957870.1\|2629519_2630434_+\|glutaminase	unknown	unknown	gnl\|CDD\|234880
NZ_CP013447.1\|WP_069271556.1\|2622829_2625220_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|132844
NZ_CP013447.1\|WP_045563773.1\|2604383_2605244_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|379346
NZ_CP013447.1\|WP_069271554.1\|2611864_2612755_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176176
NZ_CP013447.1\|WP_155123305.1\|2630561_2632013_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_060020242.1\|2608684_2610055_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182388
NZ_CP013447.1\|WP_059534748.1\|2608025_2608688_+\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP013447.1\|WP_059803335.1\|2628576_2629296_-\|response-regulator	unknown	unknown	gnl\|CDD\|236738
NZ_CP013447.1\|WP_059957868.1\|2627937_2628294_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_010089816.1\|2613262_2613514_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013447.1\|WP_042588373.1\|2606285_2606639_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP013447.1\|WP_069271553.1\|2610856_2611750_-\|PenA-family-class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP013447.1\|WP_155123271.1\|2629311_2629473_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013447.1\|WP_059534758.1\|2621537_2622572_-\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	4.127e-158
NZ_CP013447.1\|WP_059718684.1\|2605369_2606230_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.21014e-48
NZ_CP013447.1\|WP_059803335.1\|2628576_2629296_-\|response-regulator	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	3.012e-83
NZ_CP013447.1\|WP_059481569.1\|2613620_2615840_-\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	6.3602e-119
NZ_CP013447.1\|WP_069271557.1\|2625256_2626387_-\|sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	1.37853e-70
NZ_CP013447.1\|WP_060020247.1\|2606885_2607932_+\|DUF1016-domain-containing-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	6.34878e-94
NZ_CP013447.1\|WP_059957870.1\|2629519_2630434_+\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP013447.1\|WP_069271556.1\|2622829_2625220_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	1.38063e-57
NZ_CP013447.1\|WP_045563773.1\|2604383_2605244_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|379346	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold.	7.80034e-85
NZ_CP013447.1\|WP_069271554.1\|2611864_2612755_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176176	cd08487, PBP2_BlaA, The C-terminal substrate-binding domain of LysR-type trnascriptional regulator BlaA which involved in control of the beta-lactamase gene expression; contains the type 2 periplasmic binding fold. This CD represents the C-terminal substrate binding domain of LysR-type transcriptional regulator, BlaA, that involved in control of the expression of beta-lactamase genes, blaA and blaB. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. The blaA gene is located just upstream of blaB in the opposite direction and regulates the expression of the blaB. BlaA also negatively auto-regulates the expression of its own gene, blaA. BlaA (a constitutive class A penicllinase) belongs to the LysR family of transcriptional regulators, whereas BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin binding protein but it does not act as a beta-lactamase. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.19286e-118
NZ_CP013447.1\|WP_060020242.1\|2608684_2610055_+\|HAMP-domain-containing-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.68164e-63
NZ_CP013447.1\|WP_059534748.1\|2608025_2608688_+\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	1.44003e-84
NZ_CP013447.1\|WP_042588373.1\|2606285_2606639_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	1.95735e-25
NZ_CP013447.1\|WP_069271553.1\|2610856_2611750_-\|PenA-family-class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	8.65253e-75

>NZ_CP013447.1|WP_059481569.1|2613620_2615840_-|amylo-alpha-1,6-glucosidase
MPNHADETTTRAPQVAPVPPTQASGPAFIAPEADPQADARNNQYVLKAGDAFVVSDALGDVSGHDDGLFVDDMRVLSKWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGRETPEGVIHIERMRVLANNVLYEALTLTNYGASEAEVPLSVSFAADFKDMFEVRGTHRARRGTIAQPRIDAGAVRLRYDGLDRVERAVTLNFSPAPDALSVDRADYRLTIAAQACVSIYLSVEATVGAARGETPGCGRAALRTALVAVHRAMRARRATMARVRTGNPLFNAWLDRSLADLGLLTTQLDTGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAAHQARETSAFRDAEPGKIMHEFRKSEMAATGEVPFALYYGGVDTTPLFVVLAGAYVEHTGDDALIDELWPALERAIQWVSDKCDRNPYGLLDYQRTSERGLANQGWKDSHDSVFHADGRFPDGPIALVEVQAYACAAFDAMSACSQRRGHAADATRYALRARTLREQVEALFWMPDANFYGIALDGHGELCRVLASNAGHLLAFGLPDPARGAAVADALGSTLFQTGWGVRTLAAGQPRFNPMAYHNGSVWPHDNALAARGLARYGDKAAVLNLLRSLFEAAVSFEMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGVSVDAARHEVRVERPALPEGVDWLRIDDLRVGDDSVSLTFRRVDGQVVAAAEPGRVKVVAVL
>NZ_CP013447.1|WP_010089816.1|2613262_2613514_-|hypothetical-protein
MTTDKRPDDGEQKLEHLEAAVNHLHESIESQRIAVGAAKGILFSLIETLGALIGDPDLPEHARSGYEALRNKARDLRGSLDKH
>NZ_CP013447.1|WP_069271554.1|2611864_2612755_+|LysR-family-transcriptional-regulator
MSKLRPHLPLNALRAFESSARHLNFTRAGLELSVTQAAVSQQVRALEERLGCMLFTRLPRGLGLTDEGRALLPVLSDAFSRIETVLKQFDGGRFHEVLSIGVVGTFALGWLMPRLKRFGDVHPFVELRLRTNNNVVDLAAEGLDFAIRFGVGNWPATRNERLLDAPLTALCAPEIAARVTQPGDLANETQLRSYRTDEWLGWFAAAQLEPWPVNGPVFDSSRLMVEAAMQGAGVALAPACMFTRELQLGLLARPFDIDVQAGGYWLTSLKSKPLTPAMTLFRDWIASEAAGAAPVE
>NZ_CP013447.1|WP_069271553.1|2610856_2611750_-|PenA-family-class-A-beta-lactamase
MTYSSQRRTLLLAAATAPLALTLSACASPLANASSMGAATSLAELERAAGGRLGVHALDTATGRRVQHRADERFPFCSTFKAILIAAVLAESVARPALFTQRVTYRQADLLEWSPVTEKHVDTGMTVGELCEATAQYSDNAAANLLMKLLGGPAAVTAFARSIGDDTFWLDRWEPELNTALPGDARDTTTPAAMAASLRALALGDALPAPQRAQFAQWLRGNKTGDKRIRAGVPTGWQVGDKTGTGDYGTTNDIGVLWPPARGPIVLTVYYTQARADAKGKDDVIAAATRIAIAALG
>NZ_CP013447.1|WP_060020242.1|2608684_2610055_+|HAMP-domain-containing-protein
MTGLRRALMRWSGASLRRRLLFWLLPAACVIGLLASAGTYWGALRELDDLLDDQMRSMTKQIVVGPNGELSFSGDARGKHRFKVDDPDAVLLQVWRNGTLVYSTDRDLTLPPPAQAGIASVDVGGQSWRTYVTERGGTTIRVAQARHARWEAIAGIAVHLLWPVLSMLPVLAIGLWFGIGAGLRPLRLIAAGLKRRNANNLEPVDVASMPNEVRPLAEAINDLLARLDRSFTLQRHFIADAAHELRTPIMGLSIQSQLLRRAATPDESERILAQIHAGTTRLGHLAEQLLTLARIEPDAQTAAFAPVDLAALCRAVVADRARVADAHRVDLGAIGASPVTVAGNADTLRVLLNNLVDNAIRYAGDGACIDVSARVDGATPVLEVSDDGPGIPEAERADVWERFYRGAGAQAATSSGSGLGLSIVKRIAEQHRATVTLGTSAGGRGLTVTVRFNAPA
>NZ_CP013447.1|WP_059534748.1|2608025_2608688_+|response-regulator
MRVLLVEDDPLIGSGLEHGLKQEGFAVDWVKDGDAASLALRTTGYGLLLLDLGLPNRDGLSVLAALRRRDETLPAIVITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHAGRAQTTLAVGPLRLDPVKHLVWLDDAEVTLSPKEFVLLHELMREPGAVISREQFEERLYSWGEEIESNAVQVHIHNLRKKLGHDMIRTVRGVGYRIGDAA
>NZ_CP013447.1|WP_060020247.1|2606885_2607932_+|DUF1016-domain-containing-protein
MTDTLSAGPWGDDYRSWLTDLKQRVEHARQRAAASANRELVTLYWQIGRDILERQQRRGWGAKVIDQLARDLKDAFPDMRGFSPRNLKYMRALAQAWPAPEFVQQAVAQLPWSHVVTLLDKLKDPATRDWYAGKSLEHGWSRNVLAMQIDTQAHTRAGSAVTNFDARLPPPQSDLAREALKDPYVFDFLGLTEDAQERDIEQALTRHITRFLLELGAGFAFVGRQYRLEVGGDEFFIDLLFYHLKLRCYVVVELKATPFRPDYAGQLNFYLSAVDAQLRAPEDQPTIGLLLCRERNRLVAEYALRGMANPMGVAEYQLLRQIPKSLESGLPSIDRIEAELRPDLPEVE
>NZ_CP013447.1|WP_042588373.1|2606285_2606639_-|NirD/YgiW/YdeI-family-stress-tolerance-protein
MKQLARILTIALAALPAAVYAQYTGPSALTTTTVKELLANGKDDQHVQLQGRIVKHVGGEDYEFADATGTIRVEIDDKLWAGGQPVSDKSEVKLTGEFERKWSGRVKVDADRIDVVR
>NZ_CP013447.1|WP_059718684.1|2605369_2606230_-|MurR/RpiR-family-transcriptional-regulator
MAANFDELASRIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKVAQRAQVQPASLVRLAQQFGFPGWNELRDLCVARVRTRPEPLTQRARSLVRPDAKASLAHDLLTAQQHNLAATAAQNAQALAEAAKLIRKASHVHVAGFRSCYPVAFGLVYGYRLFRPTVSLLAGVAGSLEMELRSIAKHSATVIVSFAPYSAEATRVAQAARAQGSRIVAITDSAVSPIALHADAQLIFTHDSPSFFPSLVAAHALAEALVAQLLALEGSDAIAALERAEAELHAKGAYVV
>NZ_CP013447.1|WP_045563773.1|2604383_2605244_-|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MTHPDLQSRHAHAFRALHAQPGAFILPNPWDAGTARLLAMAGFHALATTSAGYAYARGLPDNAVGRDAMLAHIAEIVAAGGLPVSADLENGFGDAPETVAETIRLAAGAGAVGGSIEDATGRPDAPIYPHDAAVERIAAAVAAARALPFPFTLTARCENYLHGRRDLADTIARLVAYRDAGADVLYAPGLADPDEIAELTRAVDAPVNVVMGLQGVSLSVDALAALGVKRVSVGSALARAALGAFLRGATEMMRDGTFSFANAAIPSRQLDRWFAAENNLPLSFES
>NZ_CP013447.1|WP_059534758.1|2621537_2622572_-|rod-shape-determining-protein
MSTPLFGKLFAHPVAIDPGTATTRIYTHDRGVVLNQPSVICYRKPGGAVARQTLEAVGERAKALLGREPIHLEAVRPLQHGVIADAHAAEQMIRHFIDMSRTRSRFGRRVEVALCVPSSATAVERHALSEAALAAGAASVTLVDEALAAAFGAGLPVTDAIGSLVVDIGGGTTEVAVVALGGVVYREAIRIGGEQFDAAIISHVRALYGVQLGEQTAEHVKKTIGTASAGVPRETMRVVGRSAVDGLPRTIELSNHDVADALAAPLNAVVSAVKRTLENAPPELVTDIADGGIVLTGGGSLLANLGKRLRDETGLAARVADDPLTCAVRGAAAAMGRVPMRAAA
>NZ_CP013447.1|WP_069271556.1|2622829_2625220_+|BamA/TamA-family-outer-membrane-protein
MTAPDSYRWREVRRLGPMLAALWCCAAIAQPAPAAGASAAPDAAALPNTSHACRPDGGPDGRPAVGLVLSGGGARGYAHLGVLKVLEDNRIPIDCIAATSMGAVVGGLYASGMAAAEMQKRLSETNLADIAFDATERADLPQSRREDERLYANGATLGFSGKGVKAPAGIVQGNRLQALLADWTAAVPINQPFDKLPIPYRAIATDLQTGQMVVLDHGSLPLAIRASMAMPGLFAPAEINDRALVDGGLVRNLPVDSARQMGADVVIAVDIGSQLRPLDALASPADVAQQMVGILIRQNVAAQRKQLAPQDVLLTPELGTLTFTDFQKANEAIAAGAAAATAALPRLKRYALTPEQYAAYRAAHTQPQPPAIRITDIEIRTSGGVPQRVVRDALHVKPGDTYDPKAVSRDLLSLTTGGSFESVTQQVVSNGDGNRLVIDAREKYWGPNFLLFGLGMSSSSTDQGGFRLHVGYRRPWLTESGLEFRTDATVGSDLNAVHVELRQPLSVKYGDYIAPYAEYQRRYANLYDDTGDVKVTQYMVQTARAGIDFGVPIGRLGDFRIGLAYTHSHGSPTYNLPLQLLDPDVTGQTALLFPSYSADALSARARLVIDQLDDPMFPRKGYFAEFRVERSLMSRNGASSDTVDTRTTDAPYTELYGKLMVAQQYGRHSISAGVEGGKSVGGTNLINAFNFTLGGFQHLAAYAADQLNGDSLVYGQMTYMNQLATFSSSPVKALFIGASAEVGNVWAGGARIGGGALKQSYTFFTSLTTAFGPLYMGVALAPGGRRNIYLQLGRTY
>NZ_CP013447.1|WP_069271557.1|2625256_2626387_-|sensor-histidine-kinase
MIKRPAAHPDAPRLSPLRYVRWRWMHFRRAWTDTRADRIPNWSRLYVRTYLHLLGLVLLTALVPALALCVVLSPRLVWHAFDALPGDVWLVLAFVFAAPALAAYRWMRPVWSDLVMVRERAIDFTGGRFNTRARESHSVIIGPLARTLNALAMRMERLIAAQRDLTNGISHELRTPLARVRFALEILREPGSAAEYESALDGIAQDVTELDELIDMSLTYARLEYSSLQSNLEPTALAAWLEHQVNDAALLYPEKTIETRIAIATDVRVEMDRRLMSYAMRNLLRNASKYARSRIVVGIAIDHGNIGVYVEDDGPGVPESERERIFEAFVRLDRRTGGYGLGLAITRQVLQAHNGRIAVVDPAELGGARFEISWPA
>NZ_CP013447.1|WP_080426150.1|2626961_2627366_+|hypothetical-protein
MKLINRNFLLAAVLLSASNLASALDDRLVGNWQGQRDKDGKCSYMSWTMKRSLDGKFEIAFYKNPEKTQLLNEERGQWETKGDKISLITEGVPTPDVYTYTFTDNDTVHLSAIERDPSVDCMADYEFTDHRVKP
>NZ_CP013447.1|WP_059803331.1|2627551_2627932_-|hypothetical-protein
MSIRKTVALLVAAALSCFIGYAVIVSTLLHVETLRQLDRLVSFGYLSFVDSLEIGDADGPADFFFGGVGLVLLGSLLLTKIPSVERIARGVACALFLFLASCLVYACLHSRVGEVPDYLRSAPTAK
>NZ_CP013447.1|WP_059957868.1|2627937_2628294_-|hypothetical-protein
MKLKEAMIAMVLMLVACYIGAGAPPLELLLKPSVVLDGLALKSGTWHYRNREDYAAPASEFLASRFYTLIIATLCAVCGVAVATVRVTWKRLAFLIAVAVALQFVFCYAKMRAFYFPW
>NZ_CP013447.1|WP_059803335.1|2628576_2629296_-|response-regulator
MSFRILLVEDDTRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSIRPDLVILDVNLPGKDGFEICREARKQYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRTPARAADSSAPQPERYTFGKFSIDRTGRTVMLPDGSAPDLTSAEFDLLWALVCHAGEVVSRDDLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFSKHAWGGDE
>NZ_CP013447.1|WP_155123271.1|2629311_2629473_-|hypothetical-protein
MEPFRREFVKRHAPPVGLCALIFRNKKVRIRQAQYHAVRFGCRTLSVPAPLPC
>NZ_CP013447.1|WP_059957870.1|2629519_2630434_+|glutaminase
MNYQPILERIHTELAPWIGQGRVADYIPELAKVPADKFGMAVVTLDGNVYTVGDARERFSIQSISKLFACTLAFQLLGDALWDRVGREPSGNAFNSLVQLETERGKPRNPFINAGALVVTDVLCRRFVKAETALVEFVRRLIGATDIDYNSRVALSELQHAERNRAMAHFMASFGNMQMPPETVVDAYCRQCAIEMNCVELARAALFLANGGVAPVTGERIVDSSSAKRLSALMLTCGTYDAAGDFVYRVGLPAKSGVGGGIVAVLPGEMAVCVWAPGLDANGNSLAGTRALEWLTTYSGRSIF
>NZ_CP013447.1|WP_155123305.1|2630561_2632013_-|hypothetical-protein
MLHSFFYPATLKAFEAVIKTDPQCAIAYWGLAMAQPPNPLVPPFDEAALKRGSDAVEKGLALGPKTERERDWLLAAEAFYKDYDKIPQSQRTSAYEHAMARLTQKYPGDSEAAIFYALALNEAAPPSDKTYANQLKAAAILEKIYREQPDHPGIAHYLIHSYDYSPLAQRGLPFADKYAQIAPAAPHAVHMPSHIYSMLGMWAASVRSNEAALKVMREEAARSWPGATHPSAPHSWDFMEYAYLQLGQDARARQVRDDADAATKFPFDRLVTYTGLEAIPARYALERGAWQEAAALEPRGSRWPQAEAITYFARALGCARGGKADMAQTNIDMLTQLRAKLEQSGQPYWAEQVQVQILAASAWLAHAQGKDDDALKQMRAAADLEDGSEKNVAMENRLYPMREQLGEMLLDLKRPADALKEYEASMQATPNRLRGLYGAATAADLAQERQKAKLYYGKLVVLTRDADTNRPEVRQAKLYLDQH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	NZ_CP013447.1	569723-569752	1	0.967
NZ_CP013447_1	1.6\|569699\|18\|NZ_CP013447\|CRT	569699-569716	18	NZ_CP013447.1	569735-569752	1	0.944

1. spacer 1.5|569651|30|NZ_CP013447|CRT matches to position: 569723-569752, mismatch: 1, identity: 0.967

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
cgtacccgaggatgtgccagaggacgtacc	Protospacer
****************** ***********

2. spacer 1.6|569699|18|NZ_CP013447|CRT matches to position: 569735-569752, mismatch: 1, identity: 0.944

tgtgccggaggacgtacc	CRISPR spacer
tgtgccagaggacgtacc	Protospacer
******.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	37619-37648	5	0.833
NZ_CP013447_1	1.3\|569567\|30\|NZ_CP013447\|CRT	569567-569596	30	NZ_CP035496	Xylanimonas allomyrinae strain 2JSPR-7 plasmid unnamed1, complete sequence	1342-1371	7	0.767
NZ_CP013447_1	1.3\|569567\|30\|NZ_CP013447\|CRT	569567-569596	30	KT755656	Paenibacillus phage Tripp, complete genome	44084-44113	7	0.767
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	100870-100899	7	0.767
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	MT118288	Pseudomonas phage Epa4, complete genome	1928-1957	7	0.767
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	MH590592	Mycobacterium phage Ryadel, complete genome	16012-16041	7	0.767
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	NC_022971	Pseudomonas phage phiIBB-PAA2, complete genome	21093-21122	7	0.767
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	LN610578	Pseudomonas phage vB_PaeP_C2-10_Ab22, complete genome	20895-20924	7	0.767
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	NC_018582	Gordonia sp. KTR9 plasmid pGKT1, complete sequence	46318-46347	8	0.733
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	NZ_CP014514	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence	124583-124612	8	0.733
NZ_CP013447_1	1.5\|569651\|30\|NZ_CP013447\|CRT	569651-569680	30	MN428055	Gordonia phage Mcklovin, complete genome	4758-4787	8	0.733

1. spacer 1.5|569651|30|NZ_CP013447|CRT matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 5, identity: 0.833

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
cgtactcgcggatgtgcccgaggacgtcgt	Protospacer
*****.** ******************  .

2. spacer 1.3|569567|30|NZ_CP013447|CRT matches to NZ_CP035496 (Xylanimonas allomyrinae strain 2JSPR-7 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgtgccggaggacgtacccgaagacgtgcc	CRISPR spacer
ggtgatccaggacggacccgaagacgtgcg	Protospacer
 *** .  ****** **************

3. spacer 1.3|569567|30|NZ_CP013447|CRT matches to KT755656 (Paenibacillus phage Tripp, complete genome) position: , mismatch: 7, identity: 0.767

cgtgccggaggacgtacccgaagacgtgcc	CRISPR spacer
cgaaaaggaggacgtagccgaagaagtgcg	Protospacer
** .  ********** ******* ****

4. spacer 1.5|569651|30|NZ_CP013447|CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
gctgcgcgaggatctgcccgaggacgcact	Protospacer
  *.* ******* ************.**.

5. spacer 1.5|569651|30|NZ_CP013447|CRT matches to MT118288 (Pseudomonas phage Epa4, complete genome) position: , mismatch: 7, identity: 0.767

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
cttcaccgaggaagagcccgaggacgtatt	Protospacer
* *  ******* * *************..

6. spacer 1.5|569651|30|NZ_CP013447|CRT matches to MH590592 (Mycobacterium phage Ryadel, complete genome) position: , mismatch: 7, identity: 0.767

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
cggacccgaggaggtgcccgaggcccgcgc	Protospacer
** ********* ********** *    *

7. spacer 1.5|569651|30|NZ_CP013447|CRT matches to NC_022971 (Pseudomonas phage phiIBB-PAA2, complete genome) position: , mismatch: 7, identity: 0.767

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
cttcaccgaggaagagcccgaggacgtatt	Protospacer
* *  ******* * *************..

8. spacer 1.5|569651|30|NZ_CP013447|CRT matches to LN610578 (Pseudomonas phage vB_PaeP_C2-10_Ab22, complete genome) position: , mismatch: 7, identity: 0.767

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
cttcaccgaggaagagcccgaggacgtatt	Protospacer
* *  ******* * *************..

9. spacer 1.5|569651|30|NZ_CP013447|CRT matches to NC_018582 (Gordonia sp. KTR9 plasmid pGKT1, complete sequence) position: , mismatch: 8, identity: 0.733

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
ggtacccaaggatgtgcccgaggttctctt	Protospacer
 ******.*************** . * ..

10. spacer 1.5|569651|30|NZ_CP013447|CRT matches to NZ_CP014514 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
ctgcgccgaggaggggcccgaggacgtaga	Protospacer
*    ******* * *************

11. spacer 1.5|569651|30|NZ_CP013447|CRT matches to MN428055 (Gordonia phage Mcklovin, complete genome) position: , mismatch: 8, identity: 0.733

cgtacccgaggatgtgcccgaggacgtacc	CRISPR spacer
ctggtacgaggatgtgcccgacgacgaact	Protospacer
*  .. *************** **** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

680681 : 743844

Ralstonia_phage(20.0%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059975721.1\|680681_681113_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_060371273.1\|681125_681788_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069274070.1\|681784_683131_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_069270968.1\|683188_684577_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_069270969.1\|684838_687304_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.6e-20	23.1
WP_155123187.1\|687344_688334_+	hypothetical protein	NA	NA	NA	NA
WP_155123188.1\|688352_688613_+	hypothetical protein	NA	NA	NA	NA
WP_069274071.1\|688707_689511_+	hypothetical protein	NA	NA	NA	NA
WP_069270972.1\|689543_690704_+	hypothetical protein	NA	NA	NA	NA
WP_069270973.1\|690705_694251_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_069270974.1\|694267_696082_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059956095.1\|696180_697161_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069270975.1\|697207_697852_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_155123189.1\|697994_698426_-	hypothetical protein	NA	NA	NA	NA
WP_155123190.1\|698412_698613_+	hypothetical protein	NA	NA	NA	NA
WP_059955688.1\|698720_699152_-	hypothetical protein	NA	NA	NA	NA
WP_059956246.1\|701433_702294_+	hypothetical protein	NA	NA	NA	NA
WP_059532241.1\|702759_703143_+	avidin	NA	NA	NA	NA
WP_080485818.1\|703400_705218_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_069270977.1\|705263_707231_-	glycosyltransferase	M1HVH2	Acanthocystis_turfacea_Chlorella_virus	9.9e-26	26.6
WP_059724016.1\|707233_708571_-	hypothetical protein	NA	NA	NA	NA
WP_080405937.1\|708591_710070_-	multidrug transporter	NA	NA	NA	NA
WP_059554345.1\|710802_711207_+	TIGR02594 family protein	A0A249Y3Q7	Serratia_phage	2.8e-28	43.7
WP_059956264.1\|711235_712672_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_060227654.1\|712682_714257_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_069270978.1\|714288_715380_-	HlyD family secretion protein	NA	NA	NA	NA
WP_010098074.1\|715444_715876_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_069270979.1\|715925_716864_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059647429.1\|716965_717394_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_059841046.1\|717648_718896_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_059804844.1\|718888_719395_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_069270980.1\|719529_720639_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_060133856.1\|720716_722750_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_059715171.1\|722777_723182_-	DUF2471 domain-containing protein	NA	NA	NA	NA
WP_060156897.1\|724245_724725_+	DUF2844 domain-containing protein	NA	NA	NA	NA
WP_155123191.1\|724852_725713_+	hypothetical protein	NA	NA	NA	NA
WP_155123192.1\|725732_728975_+	hypothetical protein	NA	NA	NA	NA
WP_069270983.1\|729187_731314_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.3e-42	29.1
WP_060156902.1\|731329_732748_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_088502086.1\|732866_734195_+	TolC family protein	NA	NA	NA	NA
WP_069270984.1\|734320_735214_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059627484.1\|735301_736090_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_059481107.1\|736097_736523_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_069270985.1\|736519_739249_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-87	31.6
WP_006479553.1\|739386_739872_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_069270986.1\|739964_741713_-	OmpA family protein	NA	NA	NA	NA
WP_069270987.1\|741739_742495_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069270988.1\|742491_743844_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

1625798 : 1658479

Acanthocystis_turfacea_Chlorella_virus(33.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059673012.1\|1625798_1627169_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_060104739.1\|1627185_1628511_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_069271245.1\|1628513_1632140_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_155123232.1\|1632121_1632838_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_069271247.1\|1632858_1634949_+	protein kinase	M1I231	Acanthocystis_turfacea_Chlorella_virus	4.0e-09	27.7
WP_069271865.1\|1635004_1636051_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_059624538.1\|1636106_1636697_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_060123363.1\|1636689_1638198_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_069271248.1\|1638232_1638724_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_059549844.1\|1638742_1639291_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059954891.1\|1639295_1641182_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_080485824.1\|1641106_1642273_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069271249.1\|1642294_1644967_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.0e-69	29.9
WP_069271250.1\|1644963_1647237_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.1e-48	29.0
WP_155123233.1\|1647712_1649251_+	hypothetical protein	NA	NA	NA	NA
WP_059954901.1\|1649247_1653828_+	hypothetical protein	NA	NA	NA	NA
WP_059953880.1\|1653824_1654442_+	DUF1851 domain-containing protein	NA	NA	NA	NA
WP_080414766.1\|1654847_1655150_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_069271867.1\|1655351_1656836_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_059918601.1\|1657069_1658479_+\|transposase	ISNCY family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2261970 : 2327713

Leptospira_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059816594.1\|2261970_2262915_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_069271433.1\|2262993_2265468_-	c-type cytochrome	NA	NA	NA	NA
WP_059771135.1\|2265457_2265961_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_059860380.1\|2266087_2267245_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_059910810.1\|2267533_2268286_+	Asp/Glu racemase	NA	NA	NA	NA
WP_069271434.1\|2268316_2269147_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_069271435.1\|2269179_2270220_+	2,5-dihydroxypyridine 5,6-dioxygenase	NA	NA	NA	NA
WP_060050325.1\|2270236_2270884_+	isochorismatase family protein	NA	NA	NA	NA
WP_069271436.1\|2271017_2273300_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_010099627.1\|2273322_2273766_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069271437.1\|2274168_2275476_+	MFS transporter	NA	NA	NA	NA
WP_069271438.1\|2275852_2277193_-	APC family permease	NA	NA	NA	NA
WP_069271439.1\|2277323_2278169_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_069271440.1\|2278345_2279164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069271441.1\|2280301_2281306_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_069271442.1\|2281323_2282148_+	ABC transporter permease	NA	NA	NA	NA
WP_069271443.1\|2282158_2283055_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_069271444.1\|2283068_2284100_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-22	30.7
WP_069271893.1\|2284323_2285709_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_080485768.1\|2285705_2286698_-	polysaccharide deacetylase	NA	NA	NA	NA
WP_069271446.1\|2286610_2287483_-	polysaccharide deacetylase	NA	NA	NA	NA
WP_080430818.1\|2287490_2288324_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_069271447.1\|2288406_2289210_-	amino acid ABC transporter ATP-binding protein	M1HY76	Paramecium_bursaria_Chlorella_virus	5.3e-10	25.8
WP_069271448.1\|2289206_2290100_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_069271449.1\|2290093_2291527_-	argininosuccinate lyase	NA	NA	NA	NA
WP_069271450.1\|2291652_2292531_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.7e-15	27.1
WP_069271451.1\|2295401_2295797_+	hypothetical protein	NA	NA	NA	NA
WP_155123252.1\|2295861_2298171_+	LPS assembly protein LptD	NA	NA	NA	NA
WP_069271453.1\|2299461_2299977_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_069271454.1\|2300039_2301527_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_069271455.1\|2301579_2302794_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_069271456.1\|2302821_2304381_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_069271457.1\|2305303_2306470_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_080485769.1\|2306740_2307016_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_069271459.1\|2308426_2309818_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_155123253.1\|2310340_2310538_+	hypothetical protein	NA	NA	NA	NA
WP_080485770.1\|2310881_2311184_+	hypothetical protein	NA	NA	NA	NA
WP_069271461.1\|2311890_2312193_+	hypothetical protein	NA	NA	NA	NA
WP_155123254.1\|2312271_2313412_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-48	41.8
WP_080485771.1\|2313433_2313703_+	hypothetical protein	NA	NA	NA	NA
WP_069271462.1\|2313844_2314180_-\|transposase	transposase	NA	NA	NA	NA
WP_080485773.1\|2315251_2315899_+	LysE family transporter	NA	NA	NA	NA
WP_069271464.1\|2316229_2316721_-	hypothetical protein	NA	NA	NA	NA
WP_080485775.1\|2317456_2319769_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_080485776.1\|2320280_2320538_+\|transposase	transposase	NA	NA	NA	NA
WP_155123255.1\|2320537_2320873_+	hypothetical protein	NA	NA	NA	NA
WP_155123256.1\|2321065_2321356_+\|transposase	transposase	S5WIU1	Leptospira_phage	2.0e-07	49.0
WP_155123303.1\|2321273_2321726_-	lysine decarboxylase	NA	NA	NA	NA
WP_069271467.1\|2321787_2322618_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_069271468.1\|2322628_2323717_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_069271469.1\|2323743_2324787_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.7e-24	46.3
WP_069271470.1\|2324794_2325646_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_059807745.1\|2326690_2327713_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.2e-46	36.6

DBSCAN-SWA_4

3370121 : 3380451

Ralstonia_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069271779.1\|3370121_3372356_-	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	0.0e+00	83.0
WP_059898220.1\|3372352_3373117_-	hypothetical protein	A0A077KEQ4	Ralstonia_phage	1.5e-110	83.3
WP_069275242.1\|3373197_3374010_-	hypothetical protein	A0A077K9W3	Ralstonia_phage	1.9e-100	70.9
WP_080485809.1\|3374090_3374837_-	hypothetical protein	A0A077KEQ4	Ralstonia_phage	8.7e-100	75.2
WP_069271781.1\|3374929_3377593_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	0.0e+00	77.5
WP_080485844.1\|3378069_3379389_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_080485810.1\|3379476_3380451_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.2e-41	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013446

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013447

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection