CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013456	Burkholderia vietnamiensis strain MSMB608WGS chromosome 3, complete sequence	1 crisprs	PD-DExK,csa3,RT	3
NZ_CP013453	Burkholderia vietnamiensis strain MSMB608WGS chromosome 1, complete sequence	0 crisprs	cas3,RT,DEDDh,csa3,WYL,DinG	4
NZ_CP013455	Burkholderia vietnamiensis strain MSMB608WGS chromosome 2, complete sequence	0 crisprs	DEDDh,cas3,csa3,DinG	0
NZ_CP013454	Burkholderia vietnamiensis strain MSMB608WGS plasmid pMSMB608, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013456_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013456_1

487332-487419

Orphan

Consensus_repeat	Method
CGCATCGCCGTCGCGGGTCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013456_1

>merge|NZ_CP013456|1|487332-487419|CRISPRCasFinder
CGCATCGCCGTCGCGGGTCGGGCTTCGCGTGGTCAACGTCAGTCCCTCAGCACCATGAATTGCTCCGCATCGCCGTCGCAGGTCGGGC

>NZ_CP013456|1|1|487332-487419|CRISPRCasFinder
CGCATCGCCGTCGCGGGTCGGGC	TTCGCGTGGTCAACGTCAGTCCCTCAGCACCATGAATTGCTC
CGCATCGCCGTCGCAGGTCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013456.1\|WP_014725812.1\|489351_490029_-\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|129246
NZ_CP013456.1\|WP_059897273.1\|484166_485204_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
NZ_CP013456.1\|WP_045579643.1\|489010_489361_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP013456.1\|WP_045579641.1\|497523_497784_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP013456.1\|WP_011880077.1\|480540_481617_-\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
NZ_CP013456.1\|WP_069224868.1\|495632_497243_+\|carbamoyltransferase	unknown	unknown	gnl\|CDD\|225103
NZ_CP013456.1\|WP_011880071.1\|485568_486822_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225798
NZ_CP013456.1\|WP_045579644.1\|487599_488463_-\|hydrogenase-expression/formation-protein	unknown	unknown	gnl\|CDD\|377409
NZ_CP013456.1\|WP_059457503.1\|481613_482750_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP013456.1\|WP_011880080.1\|476417_477875_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|380187
NZ_CP013456.1\|WP_011880075.1\|482746_483004_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP013456.1\|WP_045579943.1\|494533_495601_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP013456.1\|WP_011880064.1\|490036_490747_-\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	unknown	unknown	gnl\|CDD\|273985
NZ_CP013456.1\|WP_034192889.1\|492779_493853_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP013456.1\|WP_011880067.1\|488480_489014_-\|hydrogenase	unknown	unknown	gnl\|CDD\|239263
NZ_CP013456.1\|WP_069224867.1\|482994_484170_-\|hydrogenase-maturation-protein-HypF	unknown	unknown	gnl\|CDD\|223146
NZ_CP013456.1\|WP_069224866.1\|478917_480420_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013456.1\|WP_011880063.1\|490865_492722_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057
NZ_CP013456.1\|WP_011880072.1\|485233_485581_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NZ_CP013456.1\|WP_011880079.1\|477883_478921_-\|NADH-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|224654

Protein	Function_ID	Function_description	E-value
NZ_CP013456.1\|WP_014725812.1\|489351_490029_-\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|129246	TIGR00140, Hydrogenase_expression/formation_protein_HupD, hydrogenase expression/formation protein. valid names: hupD, hynC, hoxM. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease. [Protein fate, Protein modification and repair].	4.13993e-68
NZ_CP013456.1\|WP_059897273.1\|484166_485204_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	4.70353e-128
NZ_CP013456.1\|WP_045579643.1\|489010_489361_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	7.79732e-22
NZ_CP013456.1\|WP_045579641.1\|497523_497784_+\|IS3-family-transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000220764
NZ_CP013456.1\|WP_011880077.1\|480540_481617_-\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	9.76796e-174
NZ_CP013456.1\|WP_069224868.1\|495632_497243_+\|carbamoyltransferase	gnl\|CDD\|225103	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones].	9.79781e-132
NZ_CP013456.1\|WP_011880071.1\|485568_486822_-\|hypothetical-protein	gnl\|CDD\|225798	COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion].	8.21225e-05
NZ_CP013456.1\|WP_045579644.1\|487599_488463_-\|hydrogenase-expression/formation-protein	gnl\|CDD\|377409	pfam04809, HupH_C, HupH hydrogenase expression protein, C-terminal conserved region. This family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown.	1.15477e-48
NZ_CP013456.1\|WP_059457503.1\|481613_482750_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP013456.1\|WP_011880080.1\|476417_477875_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	5.6028e-128
NZ_CP013456.1\|WP_011880075.1\|482746_483004_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	5.78658e-32
NZ_CP013456.1\|WP_045579943.1\|494533_495601_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	1.12068e-126
NZ_CP013456.1\|WP_011880064.1\|490036_490747_-\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	gnl\|CDD\|273985	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.	6.27348e-76
NZ_CP013456.1\|WP_034192889.1\|492779_493853_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	0
NZ_CP013456.1\|WP_011880067.1\|488480_489014_-\|hydrogenase	gnl\|CDD\|239263	cd02965, HyaE, HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.	1.19404e-47
NZ_CP013456.1\|WP_069224867.1\|482994_484170_-\|hydrogenase-maturation-protein-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	9.25733e-77
NZ_CP013456.1\|WP_069224866.1\|478917_480420_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.83106e-149
NZ_CP013456.1\|WP_011880063.1\|490865_492722_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0
NZ_CP013456.1\|WP_011880072.1\|485233_485581_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	3.26172e-39
NZ_CP013456.1\|WP_011880079.1\|477883_478921_-\|NADH-ubiquinone-oxidoreductase	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.62496e-67

>NZ_CP013456.1|WP_011880071.1|485568_486822_-|hypothetical-protein
MTGVASTSEDTSGFAALAGRYVVRPGRSPSIDGGRPPLAGLLLAGQPAALAAPRLSAVFSLCGRAHALCAELAVTAAGAYANAGGAAGDCGGKGDADGNVDRNGAGDDHDASRGEGERDGEDARSATLARETIAEHLRRIWLDWPARLVGGAPCALPDVRAAGTREWIERHVLGEPADGWLARWDQDPRACLSAWTARATSFPASLLLHCRTVADALRMPPRALRIDGADRARLRRIGAAIAGDPRFAQRPEQDGAPAETGVWTRCGDPHAAAYDSAWLRLGARVAELARLAAGGPAAFALRSGALALAPGEALAWCETARGVLIHWVRLVPGDAARVADYRVASPTEWNFHPDGTLAHALARVDVRPDGGGDAGLAARVGALMGAFDPCIAYALETAAPVRRDDDHTNGNRSTCMK
>NZ_CP013456.1|WP_011880072.1|485233_485581_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEVSLAGGVLAAVEAAAARERFARVNVLRLEVGRLAGVEVDALRFALDAMAPGTCLAGARIEIAEPPGRAWCLNCHCDVPLAARGEPCGRCGGYWLQPNGGTELRIVDMLVDDA
>NZ_CP013456.1|WP_059897273.1|484166_485204_-|hydrogenase-nickel-incorporation-protein-HypB
MCVVCGCDSPDGAHRDRHDAHHAHHDAQAHVRADAASGDLHYGLGPAGVTVHGLDQGRTVRIEQDVLGENDRHAAHNRRHFAAHGVRALNLVSSPGSGKTTLLCATIAALRARAPALPIAVIEGDQQTANDAERIRAAGAPAIQVNTGKGCHLDAAMVAAAYERLPLHAHGHDHGHAHGHGHEHHHHDHDHHHPHDAHASSERRGAAQQPDSVLFIENVGNLVCPALWDLGEDAKVAILSVTEGEDKPLKYPDMFAAARLMIVNKTDLLPYVQFDVERCIEYARRINPALDVICVSATTGDGIDAWLDWVLRTGDAHDPLAARIGELEAELAALRAQQRRAGDAA
>NZ_CP013456.1|WP_069224867.1|482994_484170_-|hydrogenase-maturation-protein-HypF
MTLRRERLPRAWGADTVLATGAWLKNAACVYVDGDVYWSPLHGDLDDPRHCVALEASVASLVDAARQAGRPVRAIAHDLHPDFHSSRLAVEWSERLGVPAIAVQHHHAHIGAVAAEHGLAEPVVGLALDGVGLGTDGAAWGGELLEVAPDGWRRLGHLTPLALPGGDVAAREPWRMAAAALHTLGRADEIEARLGGDVGTRAARTIGTMLARGLNCPPSTGAGRWFDAAAGLLGICRHQRTEAEAAIALERHAADYLRDHPEPDTDGLWRIADDGELDLRPLLVRVLELADAGASAQGAALFHLALADALAAWAAAVAHGRAVLLGGGCFANRLLSARLRAALDARGVRSCAPSSVPCGDAGLALGQAWVAAHTLTSGAVRATSEGVSTCV
>NZ_CP013456.1|WP_011880075.1|482746_483004_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPARVVELRDADMGVVDLGGVRKTISLALVPDARLGEYVIVHVGYALGRIDPDEAERTLALFGELAHAAGDGDVHPSGAPQ
>NZ_CP013456.1|WP_059457503.1|481613_482750_-|hydrogenase-formation-protein-HypD
MKYIDEFRDRALAERISARIQAEAQPGTRYHFMEFCGGHTHAISRYGVTDLLPANVRMIHGPGCPVCVLPVGRIDLAVQLALERGVIVCTYGDTMRVPASGGMSLMRAKAHGADIRMVYSPLDALKIARLNPDREVVFFAIGFETTTPPTALIVRDAAAAGVDNFSVLCCHVLTPAAITHLLAAPAVAADAVPLDGFIGPAHVSIVIGSAPYEGFARDYRKPVVIAGFEPLDVMQAILMLIRQVNDGRAEVENEFSRAVTRAGNAAAQALMDDVFEARESFEWRGLGEVPASALRIRAKYARHDAEARYGLVYRPVADHRKCECGAILRGLKQPRDCSLFGTVCTPENPMGSCMVSSEGACAAHYSYGRFKDIPLVPA
>NZ_CP013456.1|WP_011880077.1|480540_481617_-|hydrogenase-expression/formation-protein-HypE
MSSTPTPRTKPAYVRPLNFRDGRIDMGHGAGGRASAQLIRELFVAAFDNEWLRQGNDQAAFAPPATAPGERVVMATDAHVVSPLFFPGGDIGSLAVHGTVNDVAMSGARPLYLAASFIIEEGFALADLKRIVESMANASRECGVPIVTGDTKVVERGKGDGVFITTTGVGVVPAGIRIDGALARPGDAVLLSGTIGEHGVAIMSTREALEFDVEISSDSAALHTLVASMLAAVPGVRVLRDPTRGGLATTLNEIASQSGVGMLIREDAIPVLPQVDAACELLGLDPLYVANEGKLVAVCAAEDAPALLAAMRAHPLGAHAVQIGEVTEDAHGFVQVETKFGGRRIADWLSGEQLPRIC
>NZ_CP013456.1|WP_069224866.1|478917_480420_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MSSPLPVHPSTDPEPDPAPLRRPPTVLVVDDELRAQETIRRVLDEEFEVLAASSADEARAILQQQPVAVILCDQRMPGRTGVEFLSEVRETWPDTVRIIVSGYTDSEDIVAGINQAGIHRFVLKPWMPDHLLHTVRQAAEAQSLQQDMHRLDLELRNSVPLLRQRSHEKLAQVQNTLGFDAIVRAPGSPLDPICKLASKLARYDLSILILGESGTGKEMLARAIHYASPRAAGPFVVENCAAVADTLLESELFGHKRGAFTGAVHDHAGLFQRANGGTIFLDEIGDTSLAFQVRLLRVLQEGEVRPVGATRAVPVDVRVIAATHRDLEREVEAGRFREDLYYRIATATLALPPLRERSGDLVPIAHRLLQAIAEHESRPAGLDFARDALAVLLGYAWPGNIRELRNEIYRAVALSDDDLIRADAFSPKVLRGQSGPAARGPEAQIASAGTLQERLDAMETMLIKEALLRHRWNKTRAASELGLSRAGLRQKMQRFGLEKK
>NZ_CP013456.1|WP_011880079.1|477883_478921_-|NADH-ubiquinone-oxidoreductase
MSVDTRAPDGTGAFNVLWLQSGGCGGCNMSLLCADTPDFSGMLSRAGIRLLWHPSLSLETGADARDVLLACLDGTVELHALCVEGAMLRGPNGTGRFHVLAGTGVPMIDWVARLASVAHYTVAIGTCAAYGGITAAGANPADACGLQYDGDQPGGLLGAAYRSRSGFPVVNVAGCPTHPDWVVETLSALSMSLLDPAALDTLGRPRFYADQLVHHGCTRNEFYEYKASAVRPSDLGCMMEHMGCKGTQAHADCNTRLWNGDGSCTRGGYACINCTEPGFEEPGHAFHRTPNVAGIPIGLPSDMPKAWFVALASLSKAATPKRVRENATADHLKVAPAVRSRPRNK
>NZ_CP013456.1|WP_011880080.1|476417_477875_-|nickel-dependent-hydrogenase-large-subunit
MSRLVIGPFNRVEGDLEVRIEVVDGRVSDAHVNATMFRGFEQILLDRDPLDALVYVPRICGICSVSQGVAAARALADLAGVTPAPNGQIATNLMLAAENLADHLSHFYLFFMPDFVRPVYAARAWHAEAVSRFTPYQGERHRASLAARQRWLRLMGTLGGKWPHTGSIQPGGSARAIDNAERIRLLGFIGEFRQFLEEVLFDAPLEEIAQLDSEAALAAWRARGERRGDLRFFLTLADDLGLDRLGAGPDLYLSYGAYPQPDGAHAFRGGVWDAQRKQADALDLDAITEDATHAWLDDAGGARHPFAGLTEPRADKPGAYTWNKAPRLNGAVLETGAIARQLADGHPLIADAVARCGGSVYTRVLARLLELARVVPMMEQWVRALAPGMPYCAAFALPDEGRAVGLNEAARGSLGHWLAVKDGRIANYQIIAPTSWNFSPRDAGGRPGALEAALIGAPVEPGETTPVAVQHIVRSFDPCMVCTVH
>NZ_CP013456.1|WP_045579644.1|487599_488463_-|hydrogenase-expression/formation-protein
MQMKTFPVPVVPFGPGSQPEGDAVLDYMPMPQAMHTFVAPSLPERADARALDVVRGILLTVLDALDACRRGEQPAPIDLTACDADALRILNAVLGEGEVSARIDTADAGSVLIQETVFAGVWRIAEDGPAGRAERIEVGGAPAALAAAAHAAAAPELPVSDTHPSGVMNAPAILTEVRDQVARWRAGAAPHVINLTLLPLSSEDGAFIDAVLGGGPVSVLSRGYGNCRIASTGVVHCWRIAYFNSQDTLILNTIEITNLPEIVQAAPEDIDDSHERLAQLIDWVEEA
>NZ_CP013456.1|WP_011880067.1|488480_489014_-|hydrogenase
MSETSGSVPGATQADAPNVPNVPNAAAAGQDCPAVVQRLIEQAHATFVDEHTLDGWLADGGECVVLLMGDPVRFPESLDVAAVLPELAHVAAVRFGRALRLAVATRAGENAIARRFGSLRWPALLWLRDGQYVTVLSGMMDWDDYVKCVADALAGPTTRAPSIGIPVNVAGGSSGCH
>NZ_CP013456.1|WP_045579643.1|489010_489361_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCIGLPMQVVEAQPGHAWCVGRGVRRRVDTALVGPCAPGDWLLVFLDAARERLDAARAAEIDATLALIESVMAGEGGAASPAAFALPSALGVDELNRLVGGPQRAAGSLAVPEESK
>NZ_CP013456.1|WP_014725812.1|489351_490029_-|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MDTSPQTIPSAQDGAAIVALGIGNVLWADEGFGVRCIEALQQRFECAPNVTLMDGGTQGLYLIQHVQAADFLLIFDAVDYGLAPGELKIVEDDEVPKFLGVRKMSLHQTGFQEVLMLAQLTGKYPRRVVLIGCQPEEIEDYGGSLRPCVKAALERALDAGVAYLREWGGAPLPRRTALRDDEAVTLHHLALARYEGERPSEADACRIGDERVLVRALAKEPPSCA
>NZ_CP013456.1|WP_011880064.1|490036_490747_-|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit
MTMQTQSRRGRAPDTVPAAKAIYVYEAPVRIWHWMNAASIAVLSITGYLIGSPLATQPGEASAHFLMGYIRFAHFAAAYLFAVGLAGRAYWALVGNHHAREMFWVPVFTRDYWLDVFGMLRYYMFLGPCPRQYSGHNPLSRFAMFFVFLTVSLFMVVTGFALYGEGAQAGSWQQRTFGWIRPLLGQSQGVHTWHHLGMWAILLFVILHVYAAIREDIMGRQSVVGSMISGYRTFKD
>NZ_CP013456.1|WP_011880063.1|490865_492722_-|nickel-dependent-hydrogenase-large-subunit
MTAYSTQGFQLDNSGRRIVVDPVTRIEGHMRVEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALASVRAVEDALDIRIPPNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVVSALKADPKLTSELQQRVSPSHPMSSPGYFRDIQTRLRKFVESGQLGPFMNGYWGNPAYLLPPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAINIDGDLAAGAPINMERLNFVRSLIDQAETFCRNVYVPDLLAIGTIYKARGWLHGGGLAATNVMDYGTYPLVNYDPSTNQMPGGAILNGDWDNILPVDARDPEQVQEFVTHSWYQYPDNDRGLHPWDGMTEPHYELGPNTKGTRTAIESVDESAKYSWVKAPRWRGHAMEVGPLARYILGYAHAKQGNPHGARIKEQIDAALQSVNQDMPKLLGLPETTLGAKQLLPTTIGRTLARALEAQYCAEMMSDDWQRLVDNIRNGDTSTANVEKWDPSTWPAEAKGVGTVAAPRGALGHWIKIKDGRIENYQCVVPSTWNGGPRDAKGQIGAFEASLMNTPMANPEQPVEILRSLHSFDPCMACSTHVMSEDGAEMTTVTVR
>NZ_CP013456.1|WP_034192889.1|492779_493853_-|hydrogenase-small-subunit
METFYEVMRRQGISRRSFLKFCSLTATSLGLGPAFMPRIVEAMETKPRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDLLMASAGHQAEAILEEVMTKYKGNYILAVEGNPPLNQDGMSCIIGGKPFVDQLRRVSKDAKAVISWGSCASWGCVQAAKPNPTQAVPIHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFDRVPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEAWDDDAARRGYCLYKVGCKGPTTYNACSTVRWNGGTSFPIQAGHGCIGCSEDGFWDKGSFYDRLTHINQFGVEANADKIGGTAAVVLGAAAAAHAAASAIQRVSSKRDRDGR
>NZ_CP013456.1|WP_045579943.1|494533_495601_+|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MTAPVLPGAGGRASGARGKLVLLLAALAAFNLAAWGWAVAVFGGQPTLMGACVLAYTFGLRHAVDADHIAAIDNVTRKLMHEGRRPLTVGLMFSLGHSTIVIVASAAIAAAAFGLRERLAAFHDIAGTIGTLVSTTFLLAIAVANLVTLHSVVRTLRRVKRGERYADAHADTAPHHHGFLARLLRPVLRMVTKSWHMYVLGALFGLGFDTATEIGVLGISATSAAHGMSAWSIMVFPALFTASMSLVDTADSMLMLGVYGWAFREPVRKLYYNVGITALSAAVALLIGCVEGFALLGDTFGIRGAFRDVVDALNAHLGALGYAIVVLCAASWLVCAAIYRFRRGSFAPLAEHDHG
>NZ_CP013456.1|WP_069224868.1|495632_497243_+|carbamoyltransferase
MSHRIPPAHADGVLGVQTGPAPNTGAAWVATAAGARRIAHAGQERFDRIKQSRAYPAAAVDACRIALDLPADARPSLVACVDTGQAAPLPPYVDTVPQLRVEHALCHAAAAYYCSPFDEAAILVVDGHRHEQGATPSSHSVWIGWNGRIEPVMCSASCGIGALYEAVTVAIGFGAHETGKTMGLAPYGDDAAAPDLGGRLDGLAVDYGARCDADGARLFGLSPLAGATDDESLAARATLARAAQRECERAMLHLARAVREMTGMRRLCLAGEVSLNGRANDLVWRDAGFDAVFAGPAGADCGTSLGAALWGYHGVQGVPFRPGPFSPYGGRPYGDADVDAALAALPDRARYRDTRGTIDELAERTAALLAAGQCVALHAGRAEMGPRALGNRSLLMSPAHADARDRMNLRVKRREAFRPFAPCVPVEDAARYFELDTPSPYMLRICAVRPQWRARIAAITHVDGTARPQTVSPQDNPHLHRLLRAFERVAGIPVLLNTSFNVAGEPLVETPADALRGFARNDIDALWIGDRLLEKR
>NZ_CP013456.1|WP_045579641.1|497523_497784_+|IS3-family-transposase
MALAAVKGEQTLAELAQQFDVHPNQITEWKRQLQERAADVFGAAGPASNESPVDVKTLHAKIGQLTLENHFLSGALGKAGLLSAKR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

236539 : 245414

uncultured_Caudovirales_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009693514.1\|236539_237034_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.7e-25	43.2
WP_012210994.1\|237051_237546_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.5e-28	47.1
WP_012210993.1\|237609_238683_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_009693509.1\|238684_239917_+	MFS transporter	NA	NA	NA	NA
WP_009693508.1\|239913_240336_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.6e-53	71.4
WP_012211085.1\|240313_241051_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.0e-100	75.5
WP_012211084.1\|241590_241986_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.4e-11	42.1
WP_007182917.1\|242247_243240_-\|transposase	IS5-like element ISBmu23 family transposase	E5E3P6	Burkholderia_phage	1.3e-186	100.0
WP_009693503.1\|243351_244746_-	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.6e-17	24.7
WP_012211083.1\|244742_245414_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-29	34.7

DBSCAN-SWA_2

267971 : 316164

Bacillus_virus(16.67%)

integrase,transposase,capsid

attL 264607:264621|attR 311267:311281

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
264607:264621	attL	NA	NA	NA	NA
WP_012464984.1\|267971_269156_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_009692939.1\|269152_269290_-	hypothetical protein	NA	NA	NA	NA
WP_081333458.1\|271012_271216_-	hypothetical protein	NA	NA	NA	NA
WP_081333445.1\|276230_276518_-	hypothetical protein	NA	NA	NA	NA
WP_069224835.1\|276562_277681_+	sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	2.8e-57	36.4
WP_069224837.1\|278428_278725_-	hypothetical protein	NA	NA	NA	NA
WP_081333446.1\|279241_280042_-	cytochrome c4	NA	NA	NA	NA
WP_069224838.1\|280038_281664_-	b(o/a)3-type cytochrome-c oxidase subunit 1	NA	NA	NA	NA
WP_069224839.1\|281653_282241_-	cytochrome C oxidase subunit II	NA	NA	NA	NA
WP_144410677.1\|282251_282413_-	cytochrome c oxidase subunit 2A	NA	NA	NA	NA
WP_069224907.1\|282461_283733_-	cytochrome c	NA	NA	NA	NA
WP_080938714.1\|283801_284509_-	c-type cytochrome	NA	NA	NA	NA
WP_081333459.1\|285392_286031_+	response regulator transcription factor	NA	NA	NA	NA
WP_059990578.1\|286647_286947_-	H-NS histone family protein	NA	NA	NA	NA
WP_081333448.1\|287196_288498_-	DUF3443 family protein	NA	NA	NA	NA
WP_069224908.1\|288517_289846_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_155768327.1\|290005_290224_-	hypothetical protein	NA	NA	NA	NA
WP_081333449.1\|290532_292581_-	hypothetical protein	NA	NA	NA	NA
WP_069224909.1\|293289_294510_-	diguanylate cyclase	G3MA91	Bacillus_virus	2.2e-15	30.9
WP_106919332.1\|295347_296467_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.1e-49	39.9
WP_081333450.1\|296846_298589_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	9.1e-23	33.7
WP_081333451.1\|298809_299061_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_081333460.1\|299089_299572_-	hypothetical protein	NA	NA	NA	NA
WP_081333452.1\|299627_302510_-	glycoside hydrolase family 104 protein	A0A2P0PAW6	Pectobacterium_phage	1.6e-11	34.8
WP_069224846.1\|302568_305076_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.7e-06	48.9
WP_106919332.1\|305587_306708_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.1e-49	39.9
WP_081062286.1\|307364_307655_+	hypothetical protein	NA	NA	NA	NA
WP_069224911.1\|307772_308741_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.3e-59	43.3
WP_081333453.1\|308737_308938_+	hypothetical protein	NA	NA	NA	NA
WP_069224847.1\|309008_310004_+	endonuclease	A6XMH8	Bacillus_virus	6.0e-56	40.1
WP_059462273.1\|310015_310231_+	hypothetical protein	A0A1X9SH96	Bradyrhizobium_phage	2.9e-08	43.9
WP_069224848.1\|310283_311198_+\|capsid	phage capsid protein	NA	NA	NA	NA
WP_069224849.1\|311194_312286_+	hypothetical protein	NA	NA	NA	NA
311267:311281	attR	NA	NA	NA	NA
WP_045578667.1\|312380_313178_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	7.5e-33	37.2
WP_011880242.1\|313170_314676_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	5.4e-16	30.8
WP_085954470.1\|315347_316164_+\|transposase	IS5-like element ISBcen20 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

333144 : 379345

Escherichia_phage(25.0%)

integrase,transposase,protease

attL 373726:373741|attR 380328:380343

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007182917.1\|333144_334137_+\|transposase	IS5-like element ISBmu23 family transposase	E5E3P6	Burkholderia_phage	1.3e-186	100.0
WP_069224913.1\|334333_335962_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011880259.1\|336219_336570_+	hypothetical protein	NA	NA	NA	NA
WP_059890401.1\|336609_337557_-\|transposase	IS5-like element ISBvi6 family transposase	A0A1V0E8E1	Vibrio_phage	2.1e-58	43.3
WP_011880257.1\|337643_338423_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_011880256.1\|338423_339602_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_011880255.1\|339613_340555_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_012464895.1\|340563_340758_-	hypothetical protein	NA	NA	NA	NA
WP_011880254.1\|340805_343034_-	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_081061566.1\|343158_344685_-	TolC family protein	NA	NA	NA	NA
WP_011880252.1\|344692_345820_-	ABC transporter permease	NA	NA	NA	NA
WP_011880251.1\|345822_348651_-	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	1.6e-24	32.2
WP_011880250.1\|348654_349653_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_134206856.1\|349656_350010_-	hypothetical protein	NA	NA	NA	NA
WP_011880249.1\|350450_351482_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_043292645.1\|351525_352389_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011880246.1\|352809_353988_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_105772918.1\|354044_354641_-	hypothetical protein	NA	NA	NA	NA
WP_011880244.1\|354774_355524_-	acetoacetyl-CoA reductase	A0A0K0KVL6	Prochlorococcus_phage	7.4e-06	26.1
WP_011880243.1\|355525_355978_-	hypothetical protein	NA	NA	NA	NA
WP_060081749.1\|356276_357074_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.4e-33	37.2
WP_011880242.1\|357066_358572_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	5.4e-16	30.8
WP_011880217.1\|359081_359420_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011880216.1\|359445_359862_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_105784261.1\|360640_360940_+	hypothetical protein	NA	NA	NA	NA
WP_011880212.1\|364188_364554_+	hypothetical protein	NA	NA	NA	NA
WP_106919343.1\|365607_366425_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_126221109.1\|366583_367147_+	hypothetical protein	NA	NA	NA	NA
WP_155768328.1\|367149_367821_+	hypothetical protein	NA	NA	NA	NA
WP_106919311.1\|367747_368984_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2
WP_155768329.1\|369041_369968_+	hypothetical protein	NA	NA	NA	NA
WP_081333292.1\|369865_371899_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_069224914.1\|372025_374125_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	4.0e-41	28.2
373726:373741	attL	NA	NA	NA	NA
WP_059475418.1\|374136_375555_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_126221193.1\|375586_377020_+	TolC family protein	NA	NA	NA	NA
WP_126221107.1\|377146_377551_+	hypothetical protein	NA	NA	NA	NA
WP_046424735.1\|377647_379345_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
380328:380343	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013453

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

383582 : 425138

uncultured_Caudovirales_phage(22.22%)

transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883070.1\|383582_384089_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.1e-21	52.0
WP_045577841.1\|384375_385173_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.4e-32	36.1
WP_069224376.1\|385165_386671_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_059460822.1\|386762_387266_-	hypothetical protein	NA	NA	NA	NA
WP_059460821.1\|387262_388168_-	hypothetical protein	NA	NA	NA	NA
WP_059460820.1\|388257_389253_-	endonuclease	A6XMH8	Bacillus_virus	1.3e-53	41.4
WP_059460819.1\|389325_390291_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	7.7e-56	41.5
WP_081055531.1\|390373_390700_-	hypothetical protein	NA	NA	NA	NA
WP_059460817.1\|390943_393367_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.3e-71	37.1
WP_081055530.1\|393357_394557_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_059460815.1\|394566_397653_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.0e-53	28.4
WP_081055529.1\|397649_398378_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_081055528.1\|398461_400297_+	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	2.6e-28	32.6
WP_059460813.1\|400293_401427_+	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_155416771.1\|402109_402763_-	hypothetical protein	NA	NA	NA	NA
WP_059735598.1\|403133_403934_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_131753411.1\|403959_404256_-	hypothetical protein	NA	NA	NA	NA
WP_059990730.1\|404248_407428_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.4e-59	27.4
WP_069224005.1\|407478_412131_+	sugar-binding protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.6e-45	48.4
WP_011883097.1\|412130_412460_+	hypothetical protein	NA	NA	NA	NA
WP_059606722.1\|413809_415045_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_060042722.1\|415772_416090_+	hypothetical protein	NA	NA	NA	NA
WP_011883100.1\|416182_416965_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011883101.1\|416961_418308_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011883102.1\|418410_419022_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011883103.1\|419391_420027_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011883104.1\|420081_420597_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011883105.1\|420612_422103_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011883106.1\|422173_422677_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011883107.1\|422739_423225_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_059463913.1\|423302_425138_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

713057 : 722242

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883357.1\|713057_715010_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	7.0e-149	50.1
WP_011883359.1\|715266_716403_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.2e-22	27.2
WP_069224029.1\|716407_718444_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	2.6e-53	35.0
WP_011883363.1\|718560_719376_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.2e-35	32.5
WP_014722489.1\|719423_720110_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	3.6e-07	29.5
WP_011883368.1\|720106_720649_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_014722490.1\|720682_722242_-	polynucleotide adenylyltransferase PcnB	A0A1B0V011	Roseobacter_phage	1.7e-17	27.6

DBSCAN-SWA_3

998488 : 1006945

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011883830.1\|998488_999889_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.5e-76	37.9
WP_011883831.1\|999896_1000847_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	2.6e-16	28.5
WP_011883833.1\|1000910_1001903_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	5.9e-27	30.9
WP_011883835.1\|1001976_1002324_+	competence protein ComE	NA	NA	NA	NA
WP_011883837.1\|1002529_1003432_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.8e-52	39.9
WP_059461223.1\|1003531_1004755_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_011883840.1\|1004925_1005849_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	1.3e-41	35.2
WP_106919312.1\|1005973_1006945_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.9e-22	28.1

DBSCAN-SWA_4

1537245 : 1633753

124

Burkholderia_phage(56.79%)

tail,portal,protease,integrase,head,capsid,terminase,holin,plate,tRNA

attL 1528654:1528671|attR 1604146:1604163

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1528654:1528671	attL	NA	NA	NA	NA
WP_014722964.1\|1537245_1538010_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_011884676.1\|1538021_1538567_-	NUDIX hydrolase	NA	NA	NA	NA
WP_046427114.1\|1539017_1539515_+	heme-degrading domain-containing protein	NA	NA	NA	NA
WP_011884680.1\|1539518_1539857_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_059460542.1\|1539887_1541048_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_014722967.1\|1541167_1541596_-	hypothetical protein	NA	NA	NA	NA
WP_106919338.1\|1541602_1541872_+	hypothetical protein	NA	NA	NA	NA
WP_069224100.1\|1541937_1543095_+	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_059460543.1\|1543111_1543921_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_045579138.1\|1543917_1544883_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.5e-30	38.1
WP_006400187.1\|1544938_1545154_+	transporter	NA	NA	NA	NA
WP_011884695.1\|1545297_1545495_+	hypothetical protein	NA	NA	NA	NA
WP_011884697.1\|1545550_1545805_+	hypothetical protein	NA	NA	NA	NA
WP_069224101.1\|1546467_1547964_+	AAA family ATPase	NA	NA	NA	NA
WP_069224102.1\|1548100_1549357_-	hypothetical protein	NA	NA	NA	NA
WP_069224397.1\|1549575_1549836_-	Pyocin activator protein PrtN	I6NSR8	Burkholderia_phage	2.4e-25	64.6
WP_081333375.1\|1549927_1550917_-	chromosome partitioning protein ParB	Q6UYL1	Burkholderia_phage	2.7e-24	32.3
WP_069224103.1\|1551458_1551665_-	hypothetical protein	C7BGF3	Burkholderia_phage	2.5e-17	70.6
WP_155768254.1\|1551803_1552046_-	hypothetical protein	NA	NA	NA	NA
WP_069224105.1\|1552581_1553046_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069224106.1\|1553114_1553333_+	hypothetical protein	NA	NA	NA	NA
WP_069224108.1\|1554426_1555794_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	9.6e-145	59.5
WP_069224109.1\|1555842_1556841_+	hypothetical protein	C7BGG2	Burkholderia_phage	5.3e-84	49.7
WP_069224110.1\|1556854_1557259_+	hypothetical protein	C7BGG3	Burkholderia_phage	5.0e-33	54.5
WP_069224111.1\|1557400_1557772_+	HNH endonuclease	C7BGG5	Burkholderia_phage	3.0e-45	69.7
WP_069224112.1\|1557991_1558495_+	hypothetical protein	C7BGG6	Burkholderia_phage	6.8e-72	79.1
WP_069224113.1\|1558539_1560210_+\|terminase	terminase large subunit	C7BGG7	Burkholderia_phage	1.1e-259	76.9
WP_069224114.1\|1560206_1561508_+\|portal	phage portal protein	C7BGG8	Burkholderia_phage	7.9e-157	63.3
WP_069224115.1\|1561473_1562247_+\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	1.1e-78	67.3
WP_069224116.1\|1562315_1563566_+\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	2.4e-150	65.2
WP_069224117.1\|1563627_1564212_+	hypothetical protein	C7BGH1	Burkholderia_phage	1.5e-46	50.8
WP_069224118.1\|1564208_1564538_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_069224119.1\|1564527_1564986_+	hypothetical protein	U5P416	Shigella_phage	2.5e-09	33.3
WP_069224120.1\|1564995_1565577_+	hypothetical protein	B5TK65	Pseudomonas_phage	1.8e-44	46.6
WP_069224121.1\|1565569_1565773_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.6e-08	52.7
WP_069224122.1\|1565769_1567269_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	6.4e-150	55.2
WP_069224123.1\|1567336_1567684_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.3e-29	56.5
WP_069224124.1\|1567680_1567980_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_069224125.1\|1568103_1569942_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.3e-117	51.2
WP_069224126.1\|1569942_1571229_+	hypothetical protein	M1FPN5	Enterobacteria_phage	1.0e-47	31.9
WP_069224127.1\|1571232_1572345_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	5.1e-104	53.8
WP_069224398.1\|1572374_1572896_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.0e-31	67.6
WP_069224128.1\|1572892_1573297_+	hypothetical protein	B5TK74	Pseudomonas_phage	3.7e-28	52.4
WP_069224129.1\|1573286_1574339_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.4e-87	52.0
WP_069224130.1\|1574326_1574929_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.0e-53	51.0
WP_069224131.1\|1574938_1575718_+	hypothetical protein	A0A0A8J8U5	Ralstonia_phage	2.4e-47	47.3
WP_069224132.1\|1576233_1576596_+	hypothetical protein	NA	NA	NA	NA
WP_069224133.1\|1576758_1577043_+\|holin	holin	C7BGD7	Burkholderia_phage	2.7e-33	77.7
WP_069224134.1\|1577048_1577285_+	hypothetical protein	NA	NA	NA	NA
WP_069224135.1\|1577277_1577775_+	lysozyme	Q3HQU9	Burkholderia_phage	3.9e-64	72.7
WP_069224136.1\|1577836_1578322_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	1.5e-28	47.2
WP_069224137.1\|1578430_1579174_-	hypothetical protein	NA	NA	NA	NA
WP_155768255.1\|1579309_1580335_+	acyltransferase family protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	1.7e-13	24.7
WP_069224138.1\|1580228_1580654_-	hypothetical protein	NA	NA	NA	NA
WP_069224139.1\|1580880_1581954_-\|integrase	site-specific integrase	I6NSG1	Burkholderia_phage	1.8e-114	56.4
WP_081333378.1\|1582075_1583116_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_155625310.1\|1583265_1583988_+	hypothetical protein	NA	NA	NA	NA
WP_081056199.1\|1583984_1584929_+	DNA-processing protein DprA	S6BFL3	Thermus_phage	3.9e-20	33.3
WP_069224141.1\|1584972_1586094_-	hypothetical protein	NA	NA	NA	NA
WP_069224142.1\|1586096_1586336_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_069224399.1\|1586332_1587016_-	hypothetical protein	Q5QF30	Pseudomonas_virus	1.3e-36	42.7
WP_069224143.1\|1587015_1588068_-	phage Gp37/Gp68 family protein	Q8W6R4	Burkholderia_virus	5.3e-119	62.9
WP_069224144.1\|1588064_1588625_-	hypothetical protein	NA	NA	NA	NA
WP_059476049.1\|1588713_1588932_+	hypothetical protein	NA	NA	NA	NA
WP_155768256.1\|1588928_1589369_-	hypothetical protein	NA	NA	NA	NA
WP_069224146.1\|1589365_1589608_-	hypothetical protein	A9YWV3	Burkholderia_phage	6.4e-12	51.2
WP_069224147.1\|1591040_1592807_-	AAA family ATPase	J7HXJ7	Pseudomonas_phage	3.6e-75	37.0
WP_069224148.1\|1592803_1593685_-	cell division protein FtsK	J7I0T4	Pseudomonas_phage	8.9e-35	33.6
WP_069224149.1\|1593715_1594915_-	hypothetical protein	J7HXB6	Pseudomonas_phage	1.7e-65	55.0
WP_069224150.1\|1594926_1595736_-	hypothetical protein	J7HXJ4	Pseudomonas_phage	9.8e-89	59.8
WP_043296352.1\|1595732_1596032_-	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	4.2e-45	89.9
WP_043296355.1\|1596587_1596833_-	hypothetical protein	NA	NA	NA	NA
WP_069224151.1\|1596829_1597180_-	hypothetical protein	NA	NA	NA	NA
WP_060122992.1\|1597176_1597404_-	hypothetical protein	I6NVM7	Burkholderia_virus	2.5e-05	43.8
WP_069224152.1\|1597452_1597869_-	hypothetical protein	NA	NA	NA	NA
WP_155768257.1\|1598695_1599076_-	helix-turn-helix domain-containing protein	A9YWX7	Burkholderia_phage	3.0e-48	83.9
WP_081333379.1\|1599124_1599436_+	hypothetical protein	A9YWX8	Burkholderia_phage	5.9e-50	90.3
WP_069224154.1\|1599552_1599927_+	hypothetical protein	A9YWX9	Burkholderia_phage	5.0e-64	94.4
WP_081333380.1\|1599923_1600148_+	hypothetical protein	A9YWY0	Burkholderia_phage	1.6e-33	89.2
WP_069224155.1\|1600141_1600369_+	hypothetical protein	NA	NA	NA	NA
WP_069224156.1\|1600365_1601235_+	hypothetical protein	A9YWY3	Burkholderia_phage	1.2e-145	88.6
WP_069224157.1\|1601231_1602317_+	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	1.9e-140	66.5
WP_069224158.1\|1602313_1603288_+	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	4.6e-149	78.3
WP_069224401.1\|1603977_1604394_+	hypothetical protein	NA	NA	NA	NA
1604146:1604163	attR	NA	NA	NA	NA
WP_059990207.1\|1604390_1604651_+	hypothetical protein	NA	NA	NA	NA
WP_069224159.1\|1604814_1605285_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	7.7e-78	94.9
WP_069224160.1\|1605296_1605623_+	hypothetical protein	A9YWZ0	Burkholderia_phage	1.1e-43	90.7
WP_069224161.1\|1605619_1606213_+	DNA-binding protein	A9YWZ1	Burkholderia_phage	2.2e-101	93.7
WP_069224162.1\|1606320_1606764_-	hypothetical protein	NA	NA	NA	NA
WP_069224163.1\|1606869_1607535_+	hypothetical protein	A9YWZ4	Burkholderia_phage	2.4e-109	89.8
WP_069224164.1\|1607553_1608033_+	DUF2280 domain-containing protein	A9YWZ5	Burkholderia_phage	4.2e-55	75.7
WP_069224165.1\|1607983_1609537_+\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	4.6e-111	45.2
WP_069224166.1\|1609557_1611024_+	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	1.5e-265	95.4
WP_069224167.1\|1611020_1611776_+\|head	phage head morphogenesis protein	A9YWZ8	Burkholderia_phage	8.5e-135	97.2
WP_081333381.1\|1611777_1612071_+	ammonia monooxygenase	A9YWZ9	Burkholderia_phage	3.1e-53	93.8
WP_069224168.1\|1612242_1613700_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	4.7e-206	88.2
WP_069224169.1\|1613709_1614216_+	hypothetical protein	NA	NA	NA	NA
WP_069224170.1\|1614285_1615377_+	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	7.6e-153	93.7
WP_069224402.1\|1615387_1615855_+	hypothetical protein	A9YX24	Burkholderia_phage	1.2e-27	90.1
WP_069224171.1\|1615918_1616302_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	1.4e-61	94.5
WP_069224172.1\|1616330_1616813_+	hypothetical protein	A9YX26	Burkholderia_phage	1.0e-69	87.4
WP_069224173.1\|1616874_1617246_+	hypothetical protein	A9YX28	Burkholderia_phage	1.4e-61	91.9
WP_069224174.1\|1617250_1617841_+	hypothetical protein	A9YX29	Burkholderia_phage	6.2e-101	92.3
WP_069224175.1\|1617850_1619326_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	7.5e-111	47.1
WP_059602255.1\|1619341_1619782_+	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	6.4e-42	59.6
WP_069224176.1\|1619784_1620351_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	4.8e-18	34.6
WP_069224177.1\|1620534_1622484_+	glucosaminidase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	5.7e-42	37.5
WP_081333383.1\|1622480_1623056_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.4e-19	36.3
WP_069224178.1\|1623055_1623373_+	hypothetical protein	NA	NA	NA	NA
WP_069224179.1\|1623369_1624338_+	hypothetical protein	A9YX04	Burkholderia_phage	1.6e-154	93.8
WP_069224180.1\|1624334_1624712_-	hypothetical protein	A9YX05	Burkholderia_phage	8.4e-59	89.6
WP_069224181.1\|1624715_1625465_+	hypothetical protein	A9YX06	Burkholderia_phage	5.1e-124	91.6
WP_069224182.1\|1625472_1625826_+	hypothetical protein	A9YX11	Burkholderia_phage	3.6e-56	94.0
WP_069224183.1\|1625822_1627004_+	hypothetical protein	A9YX12	Burkholderia_phage	3.7e-201	94.4
WP_069224184.1\|1627003_1627666_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	3.1e-109	85.5
WP_069224185.1\|1627730_1628729_+	hypothetical protein	A9YX14	Burkholderia_phage	3.0e-71	40.9
WP_069224186.1\|1628893_1630099_-	acyltransferase	A0A166XZF2	Gordonia_phage	9.7e-08	25.7
WP_081333384.1\|1630129_1630894_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_059475787.1\|1630989_1631172_+	hypothetical protein	NA	NA	NA	NA
WP_059475788.1\|1631164_1631662_+	lysozyme	Q3HQU9	Burkholderia_phage	5.8e-84	92.7
WP_059475789.1\|1631658_1632207_+	hypothetical protein	NA	NA	NA	NA
WP_069224188.1\|1632203_1632683_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	1.0e-16	39.4
WP_069224189.1\|1632652_1632979_-	hypothetical protein	NA	NA	NA	NA
WP_069224190.1\|1633060_1633753_+	hypothetical protein	Q8W6R8	Burkholderia_virus	8.4e-97	71.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50101 : 89201

Burkholderia_virus(27.27%)

integrase,transposase

attL 40760:40775|attR 77381:77396

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
40760:40775	attL	NA	NA	NA	NA
WP_046429295.1\|50101_51625_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.0e-150	53.0
WP_007182909.1\|51637_52405_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.9e-71	53.8
WP_069224440.1\|52414_52960_-	hypothetical protein	NA	NA	NA	NA
WP_069224441.1\|53036_53960_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_059475131.1\|54178_54562_-	DUF2471 family protein	NA	NA	NA	NA
WP_043292978.1\|54668_54968_-	H-NS histone family protein	F8TUP5	EBPR_podovirus	1.8e-08	42.2
WP_069224442.1\|55072_58219_-	error-prone DNA polymerase	A0A1B1PA77	Streptomyces_phage	1.3e-91	27.8
WP_045577565.1\|58225_59686_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_069224443.1\|59624_60341_-	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA
WP_069224475.1\|60762_61074_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081333408.1\|61524_61752_+	transcriptional regulator	NA	NA	NA	NA
WP_155768284.1\|61978_62638_+	hypothetical protein	NA	NA	NA	NA
WP_069224445.1\|62654_62876_+	hypothetical protein	NA	NA	NA	NA
WP_155768285.1\|62906_63383_+	hypothetical protein	NA	NA	NA	NA
WP_155768286.1\|63445_63817_+	hypothetical protein	NA	NA	NA	NA
WP_155768287.1\|64146_64302_-	hypothetical protein	NA	NA	NA	NA
WP_069224446.1\|64304_64964_+	hypothetical protein	NA	NA	NA	NA
WP_069224447.1\|65004_65295_+	hypothetical protein	NA	NA	NA	NA
WP_069224448.1\|65447_65828_+	hypothetical protein	NA	NA	NA	NA
WP_069224449.1\|65846_66380_+	hypothetical protein	NA	NA	NA	NA
WP_155768288.1\|66396_66963_+	hypothetical protein	NA	NA	NA	NA
WP_046427006.1\|67309_68794_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_155768289.1\|69252_69558_-	hypothetical protein	NA	NA	NA	NA
WP_155754076.1\|69708_69900_-	hypothetical protein	NA	NA	NA	NA
WP_059896615.1\|69910_70213_-	hypothetical protein	NA	NA	NA	NA
WP_059896617.1\|70285_70504_-	hypothetical protein	NA	NA	NA	NA
WP_155768290.1\|70530_71442_-	hypothetical protein	NA	NA	NA	NA
WP_155626257.1\|72061_72334_-	hypothetical protein	NA	NA	NA	NA
WP_140993524.1\|72348_72534_-	hypothetical protein	NA	NA	NA	NA
WP_069224454.1\|72557_72941_-	hypothetical protein	NA	NA	NA	NA
WP_069224455.1\|72962_73223_-	hypothetical protein	NA	NA	NA	NA
WP_069224456.1\|73233_73590_-	hypothetical protein	NA	NA	NA	NA
WP_155768291.1\|73606_73912_-	hypothetical protein	NA	NA	NA	NA
WP_155768292.1\|74045_74309_-	hypothetical protein	NA	NA	NA	NA
WP_069224457.1\|74357_74789_-	hypothetical protein	NA	NA	NA	NA
WP_155768293.1\|74840_75119_-	hypothetical protein	NA	NA	NA	NA
WP_105819029.1\|75425_76663_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.4e-156	94.7
WP_155768294.1\|77019_77193_-	hypothetical protein	NA	NA	NA	NA
WP_069224459.1\|77908_78235_+	H-NS histone family protein	NA	NA	NA	NA
77381:77396	attR	NA	NA	NA	NA
WP_059463558.1\|78365_79277_+	DUF159 family protein	NA	NA	NA	NA
WP_059459182.1\|80025_81111_-	DUF3396 domain-containing protein	E5E3X8	Burkholderia_phage	4.1e-106	53.0
WP_059459141.1\|81116_81881_-	VRR-NUC domain-containing protein	E5E3X9	Burkholderia_phage	3.6e-40	47.6
WP_069224461.1\|81877_82408_-	PAAR domain-containing protein	A4JX23	Burkholderia_virus	9.7e-53	62.6
WP_059623654.1\|83942_84962_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_069224462.1\|85390_86518_-	HAMP domain-containing histidine kinase	A0A1B0VMK3	Pseudomonas_phage	9.2e-61	37.2
WP_069224463.1\|86763_87237_-	cupin domain-containing protein	NA	NA	NA	NA
WP_155768295.1\|87548_87818_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.5e-06	39.1
WP_106919311.1\|87963_89201_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.1e-160	98.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013456

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013453

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection