CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP017021	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT15kb, complete sequence	0 crisprs	NA	0	0
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	0 crisprs	NA	0	7
NZ_CP017022	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT44kb, complete sequence	0 crisprs	NA	0	0
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,csa3	5	7

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017020_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017020_1

27338-27692

Orphan

Consensus_repeat	Method
CNTGGAAACGGTCAACGGC	CRT
TGGAAACGGTCAACGGC	PILER-CR
TGGAAACGGTCAATGGCAGCATC	CRISPRCasFinder

6 spacers

The CRISPR arrays of NZ_CP017020_1

>merge|NZ_CP017020|1|27338-27692|CRT,PILER-CR,CRISPRCasFinder
CGTCAGCAAGGTCAACGGCAAGATCAGCGCAGATGCCGGCAAGACCTATGGCGCCCTGGAAACGGTCAACGGCTCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAACGTGGAAACCGTCAACGGCGGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCGTGGAAACGGTCAACGGCTCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGCTGGAAACGGTCAATGGCAGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCGTGGAAACGGTCAACGGCAGCATCGGGCTGGTGGGAACCGAGCTCGGCAAGGGCATCGAGACGGTCAATGGCGACATC

>NZ_CP017020|1|1|27338-27686|CRT
CGTCAGCAAGGTCAACGGC	AAGATCAGCGCAGATGCCGGCAAGACCTATGGCGC
CCTGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAA
CGTGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGTGG
CGTGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGG
GCTGGAAACGGTCAATGGC	AGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGG
CGTGGAAACGGTCAACGGC	AGCATCGGGCTGGTGGGAACCGAGCTCGGCAAGGG
CATCGAGACGGTCAATGGC

>NZ_CP017020|1|1|27394-27575|PILER-CR
TGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAACG
TGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGC

>NZ_CP017020|1|1|27394-27692|CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATC	GAGATCGGTGCCGGTGCCCAAACCAAGAACG
TGGAAACCGTCAACGGCGGCATC	CGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGCTCGATC	ACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGCAGCATC	CTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCG
TGGAAACGGTCAACGGCAGCATC	GGGCTGGTGGGAACCGAGCTCGGCAAGGGCA
TCGAGACGGTCAATGGCGACATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017020.1\|WP_005912478.1\|32708_33761_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP017020.1\|WP_005912482.1\|38819_40301_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553
NZ_CP017020.1\|WP_005912480.1\|34528_35602_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP017020.1\|WP_005921837.1\|30198_30642_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP017020.1\|WP_005912466.1\|23087_24080_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP017020.1\|WP_003482177.1\|21966_22659_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP017020.1\|WP_005912472.1\|28090_29887_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP017020.1\|WP_005912457.1\|17327_17918_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398
NZ_CP017020.1\|WP_005912453.1\|14766_16227_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP017020.1\|WP_003482139.1\|35909_36968_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP017020.1\|WP_125825465.1\|37161_37698_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017020.1\|WP_005912459.1\|18128_19256_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP017020.1\|WP_005912476.1\|30936_32070_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP017020.1\|WP_005912484.1\|40432_44905_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP017020.1\|WP_003482171.1\|22767_23088_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP017020.1\|WP_005912463.1\|20407_21748_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP017020.1\|WP_005912468.1\|24245_25772_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP017020.1\|WP_005912461.1\|19436_20138_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP017020.1\|WP_005912470.1\|25876_27112_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP017020.1\|WP_125825466.1\|37694_38807_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017020.1\|WP_005912478.1\|32708_33761_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	5.33481e-60
NZ_CP017020.1\|WP_005912482.1\|38819_40301_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP017020.1\|WP_005912480.1\|34528_35602_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	3.38177e-59
NZ_CP017020.1\|WP_005921837.1\|30198_30642_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	4.7072e-05
NZ_CP017020.1\|WP_005912466.1\|23087_24080_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	3.63293e-144
NZ_CP017020.1\|WP_003482177.1\|21966_22659_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.19314e-25
NZ_CP017020.1\|WP_005912472.1\|28090_29887_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.52694e-122
NZ_CP017020.1\|WP_005912457.1\|17327_17918_+\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.00183523
NZ_CP017020.1\|WP_005912453.1\|14766_16227_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	4.62895e-152
NZ_CP017020.1\|WP_003482139.1\|35909_36968_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP017020.1\|WP_005912459.1\|18128_19256_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	2.13277e-23
NZ_CP017020.1\|WP_005912476.1\|30936_32070_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	6.17941e-58
NZ_CP017020.1\|WP_005912484.1\|40432_44905_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP017020.1\|WP_003482171.1\|22767_23088_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	1.29038e-51
NZ_CP017020.1\|WP_005912463.1\|20407_21748_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	3.51639e-135
NZ_CP017020.1\|WP_005912468.1\|24245_25772_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	5.76154e-128
NZ_CP017020.1\|WP_005912461.1\|19436_20138_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	7.91614e-07
NZ_CP017020.1\|WP_005912470.1\|25876_27112_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.19413e-91

>NZ_CP017020.1|WP_005912470.1|25876_27112_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSTLQQERAQLQRGLQNQRAQLAALLRAADQVGRNAPLKVLLSQDTVGDATRMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVVANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGATIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP017020.1|WP_005912468.1|24245_25772_-|PDZ-domain-containing-protein
MRVAVLSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVVLTIMRDKTPKPFDVTLQRETIRVASVRSKLLEPGFGYIRISTFQADTGADFQKNLKQLQAGGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRACIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLTPEPQPGDADVPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAANKTGAEPKPAAARPATTDKPRSAEPAGKAKPATTPPAPAEPVQPTTPTDKPAEPVN
>NZ_CP017020.1|WP_005912466.1|23087_24080_+|D-2-hydroxyacid-dehydrogenase-family-protein
MRIVVPDDYQGAVAQLPCLQQLQGHQVQVLGALDAELDARAACLADADALILIRERTRVDAALLQRLPRLKLISQTGRVGAHVDVAACTALGVAVAEGVGSPVAPAELTWALILSASRRLTDYQHALQQGRWQALGDPGLGRVLHGRTLGIWSYGRIGQRMAGFGRAFGMQVVVWGGEASCAQAARDGFAVAGSREDLFERSDVLSLHRRLTAQTRHDVTAQDLARMRADALLVNTSRAELIAPGALLAALDAGRPAQAALDVFEHEPVLDPRDPLLRHARVLATPHLGYVERDSYALYFDAAFDNVLAFAAGTPRNLVNPEVLATTQRV
>NZ_CP017020.1|WP_003482171.1|22767_23088_+|DUF1820-family-protein
MSKSLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP017020.1|WP_003482177.1|21966_22659_+|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP017020.1|WP_005912463.1|20407_21748_-|outer-membrane-protein-transport-protein
MSTASTLSRATLLAVGIAGVLAVGQAHGAAFQLKENSAKGLGRAFAGSGSAPDDASIIANNPAGMRQLDGRLFQADVSAISFSAKFQPDTATYANGAPVSGGNGGDAGMIAPVPAMYFHVPFGENDNMHLGTSLTVPFGFKTEYDRDWVGRYHGTKTELQAIDFNVAFSYDVNPYVSFGASVFAERLDIDLANAVDFGSVLAARRVPGFAPGNADGYSRIKGDSTEVGFTLGGLFSIDENTHIGFSYRSQVEHKITDGTADFTVPGSAAAVLSVAAPGTFVDTKGRATVKLPASATASFTHNVNEQWSIMADVTRTAWSKFDQVTVDFASNQPDSVLDFSYRDTTFASIGADYRLSDTVTLRGGLAYDRTPTTAEHRDVRVPDASRKWVSLGMSWRPSAQTEYNFGYTHLFTSDPTSDTRSATGDRLAGSYDVKGDVLAASINYKF
>NZ_CP017020.1|WP_005912461.1|19436_20138_-|2OG-Fe(II)-oxygenase
MSQPDFIQITDNAIAHEDCVAIVQRMRQSQQLHPGRIGGGVFPDLKHSRDLRISGMAEWAEVENRLQQAVFEGVLTYLRQYPQALISPLMLQVTTADGRPHRLVAEDIVQMSDQALGDLARTCLRPGAINLQWYTADQGGYPYWHCELYPRDANADTLHRHLLWTLYLKDDFAQGETEFLFQQRKARPRTGSLLIAPTAFTHTHRGNRPVGGDKFIATSWILFQSAQALYGGE
>NZ_CP017020.1|WP_005912459.1|18128_19256_-|PA0069-family-radical-SAM-protein
MQKNSFPSASAAAERDVRSSRTVIKGRGTAAYVPGRFSVTTAVEIDDGWGALDADGETAMRPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLRISRQCLEVLAEARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALHAAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLVQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTHFRPPRPDTPQLNLF
>NZ_CP017020.1|WP_005912457.1|17327_17918_+|hypothetical-protein
MRTFRIRGRRLGLRFRETVLLAGTLACSVLFVATQRQIGLLCYAVAPILLLAFFVLQADLVWRGHKTAGAAFIMAVAAWLTFSVLATYAFSGLVHTHNFLGTWLKALLGAGFFAVLFSLSVLLARKRSVSLYWYLAGSLAVVIAVAAVHPENSGDITVNCERGSCAAGIIAFWPGAFQAADGKRPISVVLPHSGGD
>NZ_CP017020.1|WP_005912453.1|14766_16227_-|cardiolipin-synthase
MLALAQGAWEWLATIPHLEALLLAAYVLYLLWIAGWIVLQKREPVATLSWVLSLAALPYLGLLIYYWLGPQKVKRQRLRRGRSRSGMESYSSVCPPDADCTELAKIAQSTTGLAPSSATEVHWLVDGAATYAAIIEAIRGARDHIHLEYYIFQPDHSGTAICAALMERARAGVKVRLLMDAIGSSAMTRRALRTLREAGVETAWFHPSQLLKPFKRPWLNLRTHRKVIVIDGRIGFTGGINVTDDENEQVRKQAYRDLHVRLQGHVVRSLQLVFLEDWLYATSQGRAAFHGQQLWPDDMPTRAQGTVDAQVLVSGPDSSWEAIHRLMVAAIHEAKHRVWLVTPYFVPGEAARMALTSAALGGLDVRLLVPRVSDSRLVTYAARSYFDELLEAGVRIYEYGPRMLHTKALLADDDVCIVGSANFDSRSFRLNFELSMLFRDQAVAAEMAGLIGTDLQQAQEVQFARHRPLWRSRLPEAFARLLSPLL
>NZ_CP017020.1|WP_005912472.1|28090_29887_+|M28-family-peptidase
MPRKILLCLAATLALAGCKREPADAPSAPAAQTPTDSAPSAPVSRHTFSPDMTTGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLTQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGERGDNIYNGAVDNATGVAGILEIADAFAHQDPKPTRSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQSGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAASAQPADATSRATQTNMAKPPR
>NZ_CP017020.1|WP_005921837.1|30198_30642_-|PepSY-domain-containing-protein
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEVTSMLTAKGYTKVHDLKFEHGVWTADARSGDGKDVDVRIDPVTGRVYGDQTTSKLSEADVRAALSTGGYSDVHDLKFKDGLWKADAKRNGQKVELHVDPEDGHVVSVEND
>NZ_CP017020.1|WP_005912476.1|30936_32070_-|glycoside-hydrolase-family-5-protein
MSAVCFSLRALLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEFASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTASGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALAFNSDNAVMFGLMNEPNNISASEWAGAAQAAIDAIRRTGANNLILVPGALSTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLAYMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQAALATRAPVAAAAARTSAASTSATSTSVARTAR
>NZ_CP017020.1|WP_005912478.1|32708_33761_-|glycoside-hydrolase-family-5-protein
MKSLTTRTRRPRCRALSLLLLALMPLAQAQSTSGLKYAGINLSGAEIKSSQKPGVLNIDYHYPAADEYAYFAGKHMNTVRLPILWERLQPKAGGELDPAQLALIRQAVANAKAANMYVIVDVHNYAKYYGHTIGSTKVPISTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWARAAQASIDTIRKTGANNLILVPGALWTGAHSWYSTVAGQSNAVAMASIRDPLNRYAIEAHQYLDADSSGTSGGCVSATIGVERLRSFTEWLRLNKKRGFLAEFGTGNTATCNLALNGMLGYMESNSDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP017020.1|WP_005912480.1|34528_35602_-|glycoside-hydrolase-family-5-protein
MFRTPPHFPRLRIAALALTLLAAGPLVQAKEPPGPRRETAGLKYVGVNLSGAEFNSRKKPGTLFKDYTYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGPLDQAQLGLIKKSLEAAKANKQSLILDLHNYATYNGKRIGTSDVPAGALADLWRRLALEFKDDKAVIFGLMNEPNGISAPDWANAAQGTINAIRKTGAKNLILVPGTAYTGAHSWRSTSYGVSNAKALEILKDPGNNLAFEAHQYLDKDYSGTKPVCTSDSVGQEKLQGFTSWLRENKQKGFLGEFATANNPVCDKALEGMLTYMEKNSDVWLGWTWWAAGAWWKPDYPFNVQPGKDGSDKPQMAILSKYARRAGK
>NZ_CP017020.1|WP_003482139.1|35909_36968_+|NAD(P)-dependent-alcohol-dehydrogenase
MSTAHAYAAQAADQPLAPFVFERRAPGPNDVQIDIAYCGVCHSDLHTARNEWHNTLYPSVPGHEIVGRVTAVGNAVTGFKVGDLAGVGCMVDSCRSCASCQEGEEQYCEAGFTGTYNGPMFGGGENTYGGYSDHIVVDQKYVLRITHSDNLAAVAPLLCAGITTYSPLAHWKVGPGQKVGVVGLGGLGHMAVKIAKAMGATVVLFTTSESKRADALRLGASEVVISKDEAQMAAQYNTLDFILNTVAAPHNLDPFLNALKRDGAMVLVGVPEQSHPSPAVFNLVMKRRTLAGSLIGGIRQTQEMLDFCAKHNIVSDIETIRADQINEAYERMLKSDVKYRFVIDMATLDKAA
>NZ_CP017020.1|WP_125825465.1|37161_37698_+|hypothetical-protein
MRQIDLEEVAPSLGSLTEEWGRAICQAAAHCMTERSHASGVELCSDGMGSPNFAVHWAPFKDAAKVEATWSDLQVAVEHGAYAIALATIDVEYGLKVVARSAKGTGFDFWVRDPAKPGILMQGAERVEVSGILSGTKSDVSGRLSEKIKQMNQSSYMGLPGHAVVVEFGRPLVKAAKT
>NZ_CP017020.1|WP_125825466.1|37694_38807_+|hypothetical-protein
MNVEASHSEAMRLYEQALSLRAQGDFSSFQENAVLALQQEKRAAYEYEKLSGDEPTRSVLFRSAATIAIEAGKYEEALELAGAGLARRGPIVSELVSLVKDAEFRRNLRANNQRISDETLRLSLDGCAVGFGFVPYQKFQHRIDALSKMIRRTFDRLDGVHFSDSVRSKETVKVFLGAPMAGSFAVDVRVGELQQTNFPWATGRVQTAEVLTEIVKGMRAFEDGNLSGLNNLIEDESYRRNFAELGRQIIPDGSDVTVVTLESNTRLHKRDVVRLKVSRKAMHTHTKINLQNLSKNAEIVGVLRGARQPDDDSSFVEVLDEEGKFHKIRVAEELMADIVRPLWDKRVIASIFKKGSHWELEHMAPAESAD
>NZ_CP017020.1|WP_005912482.1|38819_40301_-|FAD-dependent-oxidoreductase
MSRKQAFQFLDLPRTMPTRIPVELRTSGDWGELYGRFDKADAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQEDRIIEAAALCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTAFKMGWRPDLGNVQPSGHRVAVIGAGPAGLACADRLARAGIEAVVYDRYEQIGGLLQFGIPSFKLDKSVIGKRREILEGMGVQFRLGVEVGRDISIEQLLGEYDAVFLGTGAYRYTDGGLPGQDLKNVLPALPFLVQNSRIVSGNDPHGRPIAGWEDQLALPDLTGKRVVVLGGGDTGMDCVRSAIRLGAAKVTCAYRRDEASMPGSAREVANAREEGVRFLFNRQPLSIESGADDEAIGVTVVETKLGEPDASGRRNAVPVESSESLLEADVVIIAFGFSPTLPDWLASQGVDAGSNGRIVAPSDGNGRLPYQTSNPRLFAGGDCVRGADLVVTAVAEGRDAAGSIVQLLGVKAQVKEPAAA
>NZ_CP017020.1|WP_005912484.1|40432_44905_-|glutamate-synthase-large-subunit
MAPRTRQGLNDDGLYNSVRDERDACGFGMVAQLDDQPSRALVDTAIAALSRMTHRGGVAADGLTGDGCGLLIRKPDAFLRGLARDAGITLGTRYAAGVVFLPLDEADAARCRAELEAQLHSAGVHFRGWRVVPTDDSVCGQLARDTLPRIEQVFVDAGAEQTEDGFTLALFLARRRAEQALHAVEHFYVTTLSPNGISYKGMVLPDKLSTFYPDLQRSDMSSSAIVFHQRFSTNTLPRWPLAHPFRLLAHNGEINTIEGNRRWAQARSKVWQTPRFDIAQFDPVISMHGSDSQSLDNMLELLIAGGMDLLQALRILVPPATQSLEFKDADLAAFYEFYGLNTEPWDGPAGIVACDSRYAACMLDRNGLRPARWMLTSDRHFLVASEAGVWELPAERITRKGKLGPGEMMAIDLKRGDLLDSDAIDRINRARAPYKQWLQQGVTYLQTELIDPSLVEEPFSEQTLRSYHKLFQLSTEEVEQVLRPLAETEQEATGSMGDDTPMAVLSRQTRPLYDYFRQAFAQVTNPPIDPLREGIAMSLTTQLGKETNIFHAAAETVNHVILNSPVLSQRKLRQLLKMEQYVERNRLIDLSYSLEEGLKAGLERICQEVEAAARAGAVMLLLSDRYPVPDRPMAHALLATGAVHHHLCKVGLRCDVNLIIETGTARDPHHMACLLGVGATAVYPYLAYQTLFDLGRRGILQLSKGCEQSQIGRRYRKGIYKGLSKIISKMGICTIASYRGAQLFEIVGLDPDVVDLCFADTPARIGGVDLARLDTEARELTVRAWNDQLKPEVGGLLKYVHGGEYHMYNPDVVMTLQRATRTGDAGDWQKYVAAVHARPASTLRDLVQLKRADTPTPLDDVAPAEDVLRRFDSAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTEKRSKIKQVASGRFGVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPTALVSVKLVAHAGVGTIAAGVVKAGADLITVSGHDGGTGASPVSSIRYAGVPWELGVAESHQALVANDLRERTILQTDGGLKTGLDVVKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRAGYFTGLPERVEHFFRLLAEEVRQWLSYLGVRSLDEIVGRTDLLEQLDVSPRPGVKVDLSRLLTHAQYDGSHCAAQRLYESPDSLATQMDGLLADAIANKRGGDHRFLIHNTDRSIGARLSGAIARVHGNHGMSDAPLNLRFRGTAGQSFGAFNAGGLQLELEGEANDYVGKGMAGGRLVVRPPRGARFEARSTPIVGNTCLYGATGGELFAAGRAGERFAVRNSGALAVVEGAGDHCCEYMTDGVVLVLGKVGLNFGAGFTGGLAYVLDIERDFVDRYNHELIDIHRVSAEGFENHRQHLHTLISRHRELTGSIWAQQILDEFRDYIGKFWLVKPKAASIESLTESLRRAA

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Crispr_ID: NZ_CP017020_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017020_2

2661851-2661945

Orphan

Consensus_repeat	Method
CTGGCCGAAATGGATGCCGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017020_2

>merge|NZ_CP017020|2|2661851-2661945|CRISPRCasFinder
CTGGCCGAAATGGATGCCGACCCGGCGTTCGGAGCCGCACCCACCGCAGTGGACCTGATCACCGCAGATCTGCTGGCAGAAATGGATGCCGACCC

>NZ_CP017020|2|2|2661851-2661945|CRISPRCasFinder
CTGGCCGAAATGGATGCCGACCC	GGCGTTCGGAGCCGCACCCACCGCAGTGGACCTGATCACCGCAGATCTG
CTGGCAGAAATGGATGCCGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017020.1\|WP_033479517.1\|2637802_2638573_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_CP017020.1\|WP_015472058.1\|2649338_2650343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017020.1\|WP_005914941.1\|2654406_2657508_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP017020.1\|WP_005914936.1\|2663349_2665356_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP017020.1\|WP_125825496.1\|2668804_2669032_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017020.1\|WP_005914933.1\|2669268_2671446_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP017020.1\|WP_005914930.1\|2675379_2677752_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP017020.1\|WP_033481852.1\|2671517_2674307_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP017020.1\|WP_002806565.1\|2662950_2663316_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP017020.1\|WP_005914940.1\|2658766_2659507_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP017020.1\|WP_089504397.1\|2652668_2653756_+\|IS3-like-element-ISXac2-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017020.1\|WP_080659612.1\|2651079_2651571_-\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP017020.1\|WP_005914934.1\|2668204_2668738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017020.1\|WP_005914931.1\|2674604_2675366_+\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP017020.1\|WP_005914935.1\|2665594_2667886_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP017020.1\|WP_003489696.1\|2660489_2661272_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP017020.1\|WP_005914939.1\|2659513_2660488_+\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP017020.1\|WP_005916477.1\|2636142_2637435_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NZ_CP017020.1\|WP_089504397.1\|2647806_2648894_-\|IS3-like-element-ISXac2-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017020.1\|WP_003489692.1\|2662645_2662954_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202

Protein	Function_ID	Function_description	E-value
NZ_CP017020.1\|WP_033479517.1\|2637802_2638573_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	1.12299e-36
NZ_CP017020.1\|WP_005914941.1\|2654406_2657508_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP017020.1\|WP_005914936.1\|2663349_2665356_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP017020.1\|WP_005914933.1\|2669268_2671446_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.02599e-111
NZ_CP017020.1\|WP_033481852.1\|2671517_2674307_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.0276e-114
NZ_CP017020.1\|WP_089504397.1\|2647806_2648894_-\|IS3-like-element-ISXac2-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.66335e-30
NZ_CP017020.1\|WP_005914940.1\|2658766_2659507_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	6.78947e-148
NZ_CP017020.1\|WP_089504397.1\|2652668_2653756_+\|IS3-like-element-ISXac2-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.66335e-30
NZ_CP017020.1\|WP_080659612.1\|2651079_2651571_-\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	8.69035e-09
NZ_CP017020.1\|WP_005914930.1\|2675379_2677752_+\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.31926e-102
NZ_CP017020.1\|WP_005914931.1\|2674604_2675366_+\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	1.25339e-18
NZ_CP017020.1\|WP_005914935.1\|2665594_2667886_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.21464e-108
NZ_CP017020.1\|WP_003489696.1\|2660489_2661272_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.78125e-60
NZ_CP017020.1\|WP_005914939.1\|2659513_2660488_+\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	9.13778e-147
NZ_CP017020.1\|WP_005916477.1\|2636142_2637435_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	3.10037e-177
NZ_CP017020.1\|WP_002806565.1\|2662950_2663316_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.03477e-67
NZ_CP017020.1\|WP_003489692.1\|2662645_2662954_+\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	3.92342e-10

>NZ_CP017020.1|WP_003489696.1|2660489_2661272_+|ParA-family-protein
MRIWAIANQKGGVGKTTTTLALGRGLAALGHRVLLIDLDPHSSLTRAFGVAIDPPPRGVLDLFGTPPSDLASLAHESSIPGLSYVCAQAALATLERRSANQPGLGLALQNAMTRHAGQHDYILLDCPPTLGLLMINALAACDRVVVPTQAEPLALHGLASMVRTADMVQRSRRRELPVSILPTLFDRRTRAGTETLKEMQATYGPVVWEDAVPVDTRICNAAALTVPAVGGDYQGRGLSAYRRALEWVLADDAMRMEQAA
>NZ_CP017020.1|WP_005914939.1|2659513_2660488_+|flagellar-motor-protein-MotD
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQSLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKALAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLAAVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQGVQ
>NZ_CP017020.1|WP_005914940.1|2658766_2659507_+|flagellar-motor-protein
MDRLSVIGLVLAIVAIVGGSVLKGAGISSLWSPAAFVIVIVGTVAAILLHTSPAVFRRAFKILRWVIQPPASDRPQLVARIVEWSNIARRQGLLGLEDQLPRQDDAFLRKGLQMLVDGVEPEAMRNMLEIEVDNQERQDLAAAKVFEGMGIYAPTLGIIGAVLGLMAVMKNLADPAMLGHGIAAAFTATIYGIASANLLFLPVAAKLKSVIHCSTNEREMAIEGLIAIAQGENPRNIESKLAGYLH
>NZ_CP017020.1|WP_005914941.1|2654406_2657508_-|TonB-dependent-receptor
MNCTPFARNRSTLYAGIAIALFASAASTTVSAQQADGTPAPAGQAALQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPHSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLNASTESWQWYGRDEGGPAVDVNGNPSDFNANWWGGTGFWNQDGNYYTGFMMPTAVSLEAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQDSQTNTIKIPEWNIARYYGDGNWRGGRLLDGLQFDPSGTIVTGAAYSLRPGKTYYCSEAQAAATGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKAGRTWAKGGPELQFSLPIKPRLQNADGSWTNGNFASAWDLTGTPSMTFSPELMQKLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVFDSLQFGIKRRDGGIHRNTGNNYWVCPGTDPSDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRSEDNFVYNVDEEIYSTYLQLNFHTERLRGNVGVRVARTGQRADSTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLSDSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAASKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFQPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQPVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTSMPGSAKNQTNLTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQEFRSHLGDDTRARFYTGGYAGRLAYLGLTYKF
>NZ_CP017020.1|WP_089504397.1|2652668_2653756_+|IS3-like-element-ISXac2-family-transposase
MKKSRFTDSQIIAVLKQAQAGAPVPELCREHGISSATFYKWRSKFGGMDVSMVARMKELEEENRRLKKMYAEAQLSTDLLKEALGKKMVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGWNHKRVYRIYRELELNLRIKPKKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRLGIRVEHIQPGKPQQNAYVERYNRTIRYAWLARTLFDTIDQVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>NZ_CP017020.1|WP_080659612.1|2651079_2651571_-|DUF4238-domain-containing-protein
MITAHSEAVLTALPLADTVAPTFFLRGWTILEAPLGSSFVTTDAAMMLTSLARRPHRFGLGHGSPDALTLLPLSSGYAIATFGMGPTINRWRIDSQNVREINLSLTDHAQRFLFARDDRHAAAVSRAARMKENSWNQGSTSGDVALLCKVCFRLKLLFQPLYV
>NZ_CP017020.1|WP_015472058.1|2649338_2650343_-|hypothetical-protein
MNIKACALRPVLHQVMVGRMCLQVFLRRMLVAFAALACGHAFAQDSDIKISVEEIGKARVVRRSDAMHGFTLMVKSYQRLVRPKLLSIDALSMEDIHVVFDLSAELAFYSNLYKGGLDVSYLRDMSRAYAILSKNGRLTESDKFAMRETLEQYRDFRSAEIISGHRSDVILKTDGLGYVINPAPYRGNSSRPVLSFSSDSKKFEISEKKVSKEFQIIVLGGCHFASDAAARIDADDEISSAFEKANAIWIASSTTPLNVEDFSNWQSDHPRQKLVIAFSNLDWPGVRFDSIPTFHLFRRGHLVAVLTGWSSDEKSLNDLRSILAKNDFLLPRAD
>NZ_CP017020.1|WP_089504397.1|2647806_2648894_-|IS3-like-element-ISXac2-family-transposase
MKKSRFTDSQIIAVLKQAQAGAPVPELCREHGISSATFYKWRSKFGGMDVSMVARMKELEEENRRLKKMYAEAQLSTDLLKEALGKKMVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGWNHKRVYRIYRELELNLRIKPKKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRLGIRVEHIQPGKPQQNAYVERYNRTIRYAWLARTLFDTIDQVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>NZ_CP017020.1|WP_033479517.1|2637802_2638573_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MLLERKAPGCAAHGAVPGLRAHWQSALPCPTGEHLVAQVMDFASDQFSPDAFARCAIACPPAIVRSVRKRQAEYFFGRLAARHALYQQGLVTHPDTVQIATGDAREPVWPKTAAGSISHSHRLAISAVAPADRWRSIGIDLEHLASPDAQAALRATVVNASELALLKTLHDAGDLALDALLTLVFSAKESLFKASFAAVGRYFDFSAAQVTGVDVAAGYLQLRLCESLCPSLPAGHLCPVGFAWVDPQTVVTYRVW
>NZ_CP017020.1|WP_005916477.1|2636142_2637435_-|nucleotide-sugar-dehydrogenase
MSGTTLLGPAQGRIAVIGLGYVGLPLAVAFGEQRDTVGFDIDAQRVAQLRDGHDVTLELDDAELGAATHLRYSANAADLAGCRTFIVTVPTPIDSFEQPDLEPLRSATALIAAALKPGDLVIYESTVYPGTTEEVCVPLLEATSGLRFNHDFFCGYSPERVNPGDRQRRLRDIRKITSGSTADAADAVDALYTSIITAGTWRAPSMRVAEAAKVVENIQRDVNIALVNELALIFDKLGIDTLDVLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLMHKSESVGYHPDLIHTARQVNNRVGRHVAERVCGMLAMRGVALAQARVLVLGATFKENCPDLRNSRALELVQLLQAAGVQVDTCDPWADPAEALQHGGVRLSEMPEDGAYDAVVLAVAHAQYRDYDVERIAALGKPGAVVYDVKSVWPRAAVSDRL
>NZ_CP017020.1|WP_003489692.1|2662645_2662954_+|STAS-domain-containing-protein
MSTVTLGEDLGIETSADLKQKLAGFLTQDGDLVLDAGEVRRIHTASVQLLCAFVQSRRQAGLHTEFDGCNDTFRDAARLLGVTDALGLPASNDNLKSVENAA
>NZ_CP017020.1|WP_002806565.1|2662950_2663316_+|response-regulator
MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGISLIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG
>NZ_CP017020.1|WP_005914936.1|2663349_2665356_+|chemotaxis-protein-CheA
MSMDLQRFHATFFEESREGLDAMEAGLLSLEEGNRDPEIINSVFRAAHSIKGGAATFGFEAVAGLTHVLETLLDELRSNKRQLESNAVDAMLGSVDVLRALLREAEHGTPADPAAVKAVHTRLNAVLAGEAPTAAAVAKPKEEEPEAWHIGFTPAPSLFMSGNDPLRIIRELEHLGPLQIAARLERMPGFENIDPLEAYLAWDLGLIGKIPRSKIEDTFAWVVDDCELDIRPMAVPGPPPSLAVDAPAAAPVVAVAAAPTAVAEPAAAATPAKAAAAEAESSIRVSVDKVDALINLVGELVITQAMLKQVSTGLDPAHAEQLFAGLDLLERNTRDLQEAVIGVRMLPVDAVFRRFPRLVRDLSSRLGKQVRLRTIGESTELDKGLIEKIADPLVHLVRNSIDHGLEMPDARRASGKDETGTITLAASHQGGHIVIEVSDDGRGLNRAKILEKATERGIAVPDNPTDAQVWDLIFAPGFSTADAVTDLSGRGVGMDVVRRNIQGLGGEVQLESNAGSGTRVLIRLPLTLAILDGMTVSVAGETLILPLSYVLEALQPAPEDVRAMAGDGRVLRVRGEYLPILSLTNYYGFGGQQSSKESLVVVVEGDGQKIALEVDELLGQQQVVVKNIENNYRRIPGVSGATILGDGRVSLIVDIGGLVRSLKVPQAA
>NZ_CP017020.1|WP_005914935.1|2665594_2667886_+|methyl-accepting-chemotaxis-protein
MNWFRNLAVARKLAVAFSFTALITLSLGGFALARMQSSAHLLREIGTVWAPAVQQLSEMRALLGEFRTYELAQLAHADDPKAVQNYFERMDKARADVATAQDAYAKTTTAGRQTELYDEVKLKLSDYYKANAALSAAVRAGDLVTANRVSDEQSRPARRDLFAKLVELTKFNVAHMDSEIAQAEATYRRSVHVMLVAMALFVLLAAFSGWFIARSIAGPLGRATRVASAIAQGKLDNAIHVDSRDEAGQLLHSMEGMQRQLQAVLAAQSEMAKRHDAGQISYRMEHDAFPGDYGTMVRDTNSLVGSHIAVKMKLAQIMSHYAIGDFSQDMDRLPGEKAVLSSTMDTVKANLSAMNGEIKLLAQAAANGDFSVRGDTQRFQYDFQAMVESLNQLMATADANLSSLSKLLQAIAAGDLTERMQGQFNGVFAQMRDDANATTAQLADIVGRIQHATLSINTAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAATVASQGGSVVAQVVTTMSGIEVSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVSKVAEGSVLVDRAGKTMADIVASVQRVTDIMGEISAASQEQSAGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLSDAVSIFKVQQVAAVAPAAKRPAPLRLAAAKPGATKPTTTKRAPAPAGVAAKATATATPRPVTATAANGDASWQEF
>NZ_CP017020.1|WP_005914934.1|2668204_2668738_+|hypothetical-protein
MHTANSNRSARTVLGCVFTVALLAAGVSLPPSFAAPAAPVSVLLDNVPVTALQSLAVDLAQLRDDQRAQLAARHDAARIDAYDERLGNLHQRIARHAGYFQATAPQGEQARKFALVQQQLGKYLAQHRQANRALHEGDLQYAQALSVGHSGDTRHVLWTELQSLQQSVASANVAQRN
>NZ_CP017020.1|WP_125825496.1|2668804_2669032_-|hypothetical-protein
MIADGARNGGGCTIGEHRTAHICLTKSSGNVVEALRMQHRASSSVHGVTRSGRQPGVLCRRFADYLGRTRRDGSA
>NZ_CP017020.1|WP_005914933.1|2669268_2671446_+|methyl-accepting-chemotaxis-protein
MTLKTTVAKTLANVPLKRKFFAQTALVALGIIALAVIAARMQYVDLTDTRRDGLKSQIEMAIAVVNGYAERAEKGEIDVETAKKSALHTLSTMRARGGVDYIYVTDQTPTMLMHPTRPDLVGKPLSDVLSPDGKRVFPAFVTAAQAGGGYVDYAWAKPGQKDPVQKTSYAALYKPWGWVIGTGVYLDDTQSQALVFTGIVAIAGGALVLINLLVGWMIGNSILEPVSRALAAIKGVARGDLSVRTAEHGTDEIGQMLKATDEMVHTLERFSAQTKVMVHMHAGDDVTHRMPTDFPGVYGELATGINTMIFEHLDAIVDAIGILNEYAQGDLSRNAARLPGTRAVLHEAMDAAKASLLAINTEIKRLAQAAANGDFSQRGDATRFKHDSARMINDLNAMMEVSDRNLGKLSELLASLAEGDLTARLDGQYHGVFARMRDDANATATQLAGIVGRIQQAASSITGSASEIAAGNNDLSQRTEQQAASLEETAASMEELTSTVKQNAESARQANQLAIGAASVASQGGQVVSQVVDTMSGIQTSSRKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVGKVSEGSLLVDQAGKTMAEIVSSVQRVTDIMSEISAASQEQSAGIEQVNLTVTQMDESTQQNAALVEEATAAANAMQQQAQQLDEAVSSFRIVAAASNQFGYAGARAPTRVALAAH
>NZ_CP017020.1|WP_033481852.1|2671517_2674307_+|HAMP-domain-containing-protein
MTSPSTHSPFSGRLAYRLMFGTAVIASLCFGLTAAITYWQSSRALSASAQATMQNAARYQAEQIGSDLGQALTTGQSLATTLLVQRANDGISRDSAAAVVHDQLLDHPEWVGMGTLWEPQAFDGKDSAFANATGHDATGRFMTYWGRSDQTLVREPLTDYETPGLGDWNLKPRALLRQTVAEPYDYKIGGKTVLMTTLSTPILQDGKYLGAVTVDVALAALQQRLGALRPMQDGYVELLSPAGVVLASHDTTRIGKQVTDARHRTMLEAIKAGKDALDFTPDADGAVSAYVPLQIGKAQERFALGVVVPYATIMQQAHHLLWTILAVGLGSALVLSVALFALLRRQVVRPLEAAAHVADAIASGKLDNQITVQRQDEVGRLMGAMQRMQSDLRERIERDAQVANENLRIRTALEHSEMEVLLADEQHNAVFITQALHTSFKQGEPAFHAKGQTGFSADAVVGKPMDYVFGNDSEGTARTQRLRQLQSTSTERYRFGPVTLDLTMTPLYAPDGRRSGSMLLWRNISAEVSTQQEVAELVQSALMGDFGQRLALEDKHGFYLEFGRQLNGLLETTSLSLERISSLLSALAEGDLTVRMDGDFQGVFARMRDDANATVAQLTGIVSGIQTSATQISAAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAEHARQANQLAIGAADVASHGGSVVAQVVTTMSGIETSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVEQGASLVHQAGTTMSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLTEAVAVFRLNHAVKPVLAASTGKPAMRAVGTTKPAPARGKRVATPLRQSVGKSSGTAVNDSQWQDF
>NZ_CP017020.1|WP_005914931.1|2674604_2675366_+|transporter
MKPSVIASCFVLLGVMGQARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWERDDAVDAYSTPTLLRYGLGQTWELRLETDGWQRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQALRGHGARPSFRLVAEWELSDSISAGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRSFVEVALPQIANSDDGGTVALLDIGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFRF
>NZ_CP017020.1|WP_005914930.1|2675379_2677752_+|chemotaxis-protein
MKIMHMLGVLVLVAALALLALGGVGYNGQRGLLDAIAAQVISSDALRNHMQADMMHDALRGDVTAALLAASTKDDKAVAAARTALGEHAGEFRESLAANRKLPLAPALRSELDAVTPALQAYIASADHVVNAAETHADSAAAYADFNDKFSQLETRMGAISERILALNEASRRQAEQYSHRVMWQQGSAVVLALVCLALAAGWILRSVFGLLGGEPQLAMAAAQHIAEGRLDQPIPVAAKHSRSLMAALARMQRDLRERLERERSIAAENLRIRTALDNASTGMYIADPDLTIIYTNGALQNLLHTYADDIQACAPAFHRTANLVGQPVSLLEVGNAQDAEIYQRLDRQGAAQREVQYRSTCIAQNVSAIRDETGAHLGFVCEWRDRTAEARVEIDVADVVRSAAAGDLSKRIDSDGKQGFFLQLAQQLNALLDANAVSIAEVSRLLSALADGDLSARMQGDFHGVFATMRNDANTTAEQLALVIGGIQQAAGSIHTASSEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAAGVASQGGAVVAQVVTTMSGIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVAEGSQLVHQAGTTMADIVASVQRVTDIMGEIAAASQEQSSGIEQVNLTITQMDEATQQNAALVEEATAAARTMEDQASQLAHAVSRFTLADAPPSQAATPAAKKATVVAVARASKTSTRAPGARKPAVNAPAATAGNDNQWQDF

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Crispr_ID: NZ_CP017020_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017020_3

3135017-3135155

Orphan

Consensus_repeat	Method
ATTTCCGAGGTGCCCTCGTAGATTTCGGTGATCTTTGCATCGCGG	CRISPRCasFinder

1 spacers

DEDDh,csa3

The CRISPR arrays of NZ_CP017020_3

>merge|NZ_CP017020|3|3135017-3135155|CRISPRCasFinder
ATTTCCGAGGTGCCCTCGTAGATTTCGGTGATCTTTGCATCGCGGTCGACCTCAGCGCAAGCCAGTCTCGCCGCGCGCGATCACCAGGCGCTGAATTTCCGAGGTGCCCTCGTAGATTTCGGTGATCTTTGCATCGCGG

>NZ_CP017020|3|3|3135017-3135155|CRISPRCasFinder
ATTTCCGAGGTGCCCTCGTAGATTTCGGTGATCTTTGCATCGCGG	TCGACCTCAGCGCAAGCCAGTCTCGCCGCGCGCGATCACCAGGCGCTGA
ATTTCCGAGGTGCCCTCGTAGATTTCGGTGATCTTTGCATCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017020.1\|WP_005913799.1\|3120863_3121733_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|183065
NZ_CP017020.1\|WP_033481663.1\|3147055_3147901_-\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP017020.1\|WP_005913773.1\|3148228_3148981_-\|DUF2058-family-protein	unknown	unknown	gnl\|CDD\|225664
NZ_CP017020.1\|WP_003483700.1\|3148981_3149218_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179141
NZ_CP017020.1\|WP_033481675.1\|3133262_3134708_-\|acetylhydrolase	unknown	unknown	gnl\|CDD\|238858
NZ_CP017020.1\|WP_005913798.1\|3121755_3122586_+\|phosphate-ABC-transporter-ATP-binding-protein-PstB	unknown	unknown	gnl\|CDD\|182692
NZ_CP017020.1\|WP_022559636.1\|3124207_3124843_+\|ribonuclease-T	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|179951
NZ_CP017020.1\|WP_005913784.1\|3136761_3137757_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
NZ_CP017020.1\|WP_005913790.1\|3130210_3132739_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP017020.1\|WP_005913791.1\|3129456_3129930_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP017020.1\|WP_003487142.1\|3128395_3129145_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021
NZ_CP017020.1\|WP_005913782.1\|3137753_3138893_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|236539
NZ_CP017020.1\|WP_033481670.1\|3125096_3128132_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP017020.1\|WP_005913778.1\|3142230_3143436_-\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|225493
NZ_CP017020.1\|WP_005913797.1\|3123534_3123942_+\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|227742
NZ_CP017020.1\|WP_005913776.1\|3144415_3145726_-\|L-fucose:H+-symporter-permease	unknown	unknown	gnl\|CDD\|340952
NZ_CP017020.1\|WP_033481665.1\|3145739_3146915_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380512
NZ_CP017020.1\|WP_003487149.1\|3122714_3123425_+\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
NZ_CP017020.1\|WP_033481666.1\|3143432_3144419_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP017020.1\|WP_005913786.1\|3135491_3136640_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847

Protein	Function_ID	Function_description	E-value
NZ_CP017020.1\|WP_005913799.1\|3120863_3121733_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|183065	PRK11268, pstA, phosphate ABC transporter permease PstA.	1.62113e-115
NZ_CP017020.1\|WP_033481663.1\|3147055_3147901_-\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	2.20366e-10
NZ_CP017020.1\|WP_005913773.1\|3148228_3148981_-\|DUF2058-family-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	2.22758e-44
NZ_CP017020.1\|WP_003483700.1\|3148981_3149218_-\|hypothetical-protein	gnl\|CDD\|179141	PRK00846, PRK00846, hypothetical protein; Provisional.	1.42338e-37
NZ_CP017020.1\|WP_033481675.1\|3133262_3134708_-\|acetylhydrolase	gnl\|CDD\|238858	cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.	2.78423e-88
NZ_CP017020.1\|WP_005913798.1\|3121755_3122586_+\|phosphate-ABC-transporter-ATP-binding-protein-PstB	gnl\|CDD\|182692	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB.	0
NZ_CP017020.1\|WP_022559636.1\|3124207_3124843_+\|ribonuclease-T	gnl\|CDD\|179951	PRK05168, PRK05168, ribonuclease T; Provisional.	2.4632e-127
NZ_CP017020.1\|WP_005913784.1\|3136761_3137757_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.69516e-24
NZ_CP017020.1\|WP_005913790.1\|3130210_3132739_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP017020.1\|WP_005913791.1\|3129456_3129930_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.24803e-44
NZ_CP017020.1\|WP_003487142.1\|3128395_3129145_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	3.54154e-98
NZ_CP017020.1\|WP_005913782.1\|3137753_3138893_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP017020.1\|WP_033481670.1\|3125096_3128132_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.00578e-59
NZ_CP017020.1\|WP_005913778.1\|3142230_3143436_-\|AGE-family-epimerase/isomerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	1.35754e-146
NZ_CP017020.1\|WP_005913797.1\|3123534_3123942_+\|RcnB-family-protein	gnl\|CDD\|227742	COG5455, COG5455, Predicted integral membrane protein [Function unknown].	3.4057e-13
NZ_CP017020.1\|WP_005913776.1\|3144415_3145726_-\|L-fucose:H+-symporter-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.21317e-168
NZ_CP017020.1\|WP_033481665.1\|3145739_3146915_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380512	cd06289, PBP1_MalI-like, ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.0216e-97
NZ_CP017020.1\|WP_003487149.1\|3122714_3123425_+\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	5.60831e-59
NZ_CP017020.1\|WP_033481666.1\|3143432_3144419_-\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	4.44746e-102
NZ_CP017020.1\|WP_005913786.1\|3135491_3136640_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	5.70299e-174

>NZ_CP017020.1|WP_033481675.1|3133262_3134708_-|acetylhydrolase
MLFCTAVGAQTSPPSIVPTDRLQESWWAQRHAQVLEQVKQHPDAKLLLIGDSITQNYEKAKAPDEDFQPTWQTFYGSRGALNLGFSGDGTENVLWRLANGEVDGLQPKVALVLIGTNNTGHLGQTAEQTQLGIDAVVAAIEQKLPRTHILLLSVLPSDLSSEKSRRDAQINQGLAVRYGDNPRVTYLDVSSVFQRDGKLRTELFYDTRFRPAAGALHPDTRGQRMLAEAIEPTLARLLGEPPVKPVAELGRDAATSLMPVDWLEQDSYDWYARHHAALAIARSLKPEVVMIGDSITHFWSGPPQATRVSGPESWQWLYGLRPVLNLGFGWDRTQNVLWRIRQGELDGLDPRWVVLHLGTNNLSGTAQSRASTPAEAALGVHAVVSEVRRRLPNSKLILMAIMPRGRNPDDARRAPIAETNRLLVARYAKDPAVQLVDIGPRLLQPDGTLPEALMPDGTHPSESGYRIWARALREAGITAAP
>NZ_CP017020.1|WP_005913790.1|3130210_3132739_-|ribonuclease-R
MTKKKTPDSDRSSRRKSTGAGDSGAAEQQKLPGWMPDFLVRAAAGASTRSANKRAADKASNASKASPQPATAPPAPRAPHPRKSGPSAPPPERFQTAAPAAAEFKDPHAEREALRYAEPIASREAILQLLEACDGPQTAEEIAEQLNLSDRIDALGKRLAAMVREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDEGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDGIGEAREGQLVVCELIAPPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEPQMIGRRVDLRQMPLVTIDGEDAKDFDDAVYCEPNADGFRLVVAIADVSNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGRDGEVTGSRFYEAVMNSHARLTYSQVWKAVGEDDADTKAFIGPLLPQVQRLHQLYHLLSKARTQRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSVHVPAPYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRAIKHALTGTSPQTFIYTPRQMAALALQCSERGRRADEAEREVDERYRAAWMEKHVGGQFDGVISGVTGFGLFVELTQSKVNGLVHVTQLPQDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEERKIDFRLADENGAAPEAPLPPREKPTKRKKKSY
>NZ_CP017020.1|WP_005913791.1|3129456_3129930_-|GFA-family-protein
MDTSSEYSGGCQCGAVRFHVRGALVDASICHCRMCQKAFGAYYAPLVSVRGTEFRWTRGEPKRFASSTVVQRGFCADCGTPLTYEAPDGISVAAGAFDTPERLPPHIQYGLDRKLPFVDSLAQLPTRPPEDDAAAEAFLASVVSRQHPDHDTAHWPA
>NZ_CP017020.1|WP_003487142.1|3128395_3129145_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSKQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGGQVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRLGA
>NZ_CP017020.1|WP_033481670.1|3125096_3128132_-|GGDEF-domain-containing-protein
MNDGVGAWQTGESSCGVQASARRRNRQQQRWFGVGACLLLALCSLVAVASPAGTARLRDYAIDSWSSRNGLPHNSLRDIAQTRDGYLWFATWEGLVRYNGLEFSVIDRSTRPGLPDNGVGALYVDRDGALWLSDARGNLVRHAADGQWRQWQRQGQWPQALIHAMTMDAEGRMWLLFEGHGLGCLWPDGHFDYFPPRDDAPLQSSFPRMVFDARGRLLIGTFDGLIYREPDGRMHRAPAALGFPPGLAWPYRATDGTVWVVAGDQLYRLQGERAELVHRVPGQGHFTAMLQDRRGDLWLGSENQGLLRIGPYGVEQLPAGRSLPTGRIVSLREDAEGSIWVGANGGLFRLRETLFSSYSQRDGLSGDYSRAMLEDRDGSLWIAGTAGLDRMLPDGRIVPVPVVTPSGRRLSVLSLALDRHGDLWVGTYADGVFVLRAGRVLRHYGEAEGIPGGHIRAIVIDDHDSVWLATQRGVAQLVDGRRAPLAIEGLPASVVTALASVDGALWIGSVDGAAVLRNGKLRQLNLEKLGGARSVFGFQPIGDAMWIATDRGLYRERNGVLARVGLEQGMPVDTVFQLIDDRRGNAWISSNRGVLRTELKTLNAVADGHGTLAIERYGEIDGMGNAQANGSSGPSLLRRADGTVWVVTAGGVSRVDASRLQRFRERRPPPAVIENVQQDGQPLVWRQRAQLAGGHRLNVSYVGMSFLLPERIEYRTRLEGLDASWTERGRQRSVEFIGLPPGRYRLHVAARHPGGAWSPQEAVWAYEVLPLWWQRQDVRLAAALGTLLLLALLYRVLLHRYKTHNARLAELVRKRTEDLQRQAQRLLQANQEKSELLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKRINDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRALFHARHNWGSVEGLQVTFSAGVAALRDEDTVSSLMQRADHALYEAKSAGRDRICVG
>NZ_CP017020.1|WP_022559636.1|3124207_3124843_+|ribonuclease-T
MNEPVDAQPAPSFLPMSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEITGIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHKRNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIANAWPGPV
>NZ_CP017020.1|WP_005913797.1|3123534_3123942_+|RcnB-family-protein
MKRFVGSFMALTLLTSGVAFAAPQQHDLDHDRDRNAQRHDDHGPDRHDDHRDERHDDRRDDRRKAHHDDHRNDRRGPPYRRGERLAPDHRGSRVADYHKHHLKPPPRGHEWRRVDNTYVLIAVATGLITSVVAGH
>NZ_CP017020.1|WP_003487149.1|3122714_3123425_+|phosphate-signaling-complex-protein-PhoU
MNQHLNDHIVKSYDEEQHRLVAEIVRMGETAVAQLEAALDVVERRDDNAAHRIVVNDEAIDALEHAISHDVMRLALRGPMARDLREILAGLRIPADIERIGDYAANVAKRSIALNSAPPLPQTVGLRALGQMAADAVREAVQAYRNKDADAAIRVRDEDARLDAQYTALFRELLTYMMEDPRNITPCTHLLFMAKNLERIGDHATNIAENVWFLVHGEQPLPPRVKRDDTSSTGVV
>NZ_CP017020.1|WP_005913798.1|3121755_3122586_+|phosphate-ABC-transporter-ATP-binding-protein-PstB
MNDLQNAKPMHRIAVPAATGAPTAQAPVKVAARNLDFYYDKYHALKSINIEIPEKRVTALIGPSGCGKSTLLRIFNRIYALYPKMEARGEVLLDNENILSPKYPMNRLRSKVGMVFQKPVPFPMTIFENVAYGIRHHEKLSKADMQNRVEQALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVALRPDVLLLDEPTSALDPISTSRIEQLVEELKRDYTIVIVTHNMQQAARVSDYTAFMYLGDLIEHDRTETIFSQPSKQQTEDYITGRFG
>NZ_CP017020.1|WP_005913799.1|3120863_3121733_+|phosphate-ABC-transporter-permease-PstA
MSAASVSQSLYNRRRVTNAIALLLSCVTALFGLFFLAWILWTLVSKGVPGIDLNLFTKMTPPPMQEGGLLNAFFGSAVMCGLALAIGTPLGIAAGTWLAEYGNARKAGVVVRFVNDILLSAPSIVLGLFVYTLYVMQTGGRFSAFAGALSLAFIVLPVVVRTTDEMLRLVPAQMREAALSLGIPQWKVTVQVLYRSASAGIVTGVLLALARISGETAPLLFTAFGNQYWNSNIFQPMASVPVIMNQFAGSPYDTWQTLAWAGALVLTVFVLLVSLGARALLLRNKISND
>NZ_CP017020.1|WP_005913786.1|3135491_3136640_-|acyl-CoA-dehydrogenase
MDFSFTEEQLMIQDVARRIAQEKIAPSAEQFDRSGEFPLENIRLLGENGLMGIEVPVEYGGAGMDPISYALAMIEIAAADGAHSTIVSVNNSLFCTGILKNGSEAQKQLYVRAIAEGAHIGAFALTEPQSGSDASAMRCRAVKQADGSFLINGKKSWITSGPVAKYIVLFAMTEPDKGSRGITAFMVDTDRAGFHRGKTEPKLGIRASATCEIEFADYVAQPNEVLGVEGEGFKTAMSVLDAGRIGIASQAVGIARAAYEATLAYVKERKAFGAAIGTFQMTQAKIADMKCKLDAALLLTLRAAWLKGQGQKFGTEAAVAKLTASEAAMWITHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARGETGLR
>NZ_CP017020.1|WP_005913784.1|3136761_3137757_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDLEDWSARLKVFADATRVRLLALLEQEELTVAELSAITRLAQPRVSTHLAKLKEAGLVRDRRAGVSAYYRFDEVSLDPAQRALWLALSTGSDDPLLRQDAERVAAVLANRAADQNWADSVAGDMERHYSPGRTWEALARTALPLLETGDVLDIASGDGVLAELVAPHATRYICIDTSARVVAAASERLRKLRNVEVREGDMHALPFPDASFDLVVLMHALTYAAKPAQAVAESARVLRPGGRLLLCSLAKHEHRAAVHAYGHVNLGFAAKELRKFVEKAGLDVSSLETVTREKRPPHFEVISLIAVKPGMANRNSGLVENKDTAARRTGP
>NZ_CP017020.1|WP_005913782.1|3137753_3138893_+|5-methyltetrahydrofolate--homocysteine-methyltransferase
MTHVRIPNPESPIPFALPWLHPERAAKLTAALAERILIIDGAMGTMIQRHDLQEPDYRGTRFADGYDSAHVHGPGCDHAHVPQGHDLKGNNDLLLLTRPEIIAGIHRAYLEAGADLLETNTFNATSVSQADYHLEHLVYELNKAGAQVARACCDDVEALTPHKPRFVIGVLGPTSRTASISPDVNDPGYRNTSFDALRATYREAIEGLIDGGADTLMVETIFDTLNAKAALYAIEEVFDARGGRLPVMVSGTITDASGRTLSGQTAEAFYASVAHGRPLSIGLNCALGARDLRPHVETLAQIADTYVSAHPNAGLPNAFGEYDETPEEMAQTLREFAQAGLLNLVGGCCGTSPDHIRAIAEAVADLPPRQLPGAQELAA
>NZ_CP017020.1|WP_005913778.1|3142230_3143436_-|AGE-family-epimerase/isomerase
MSRLPATPAPDFRSADVLRQHIADTMAFYHPRAIDPAGGFFQYFRDDGSIYDAGHRHLVSSTRFVFNYAMAYREFGDAAYLQAVRHGLDYLRNVHRNPQTGGYAWTLRDGVVEDDMNHCYGVAFVLLAYSCGLKAGVDEARAWMDETWQLLEKHFWEAEFGLYRDEADAQFNFTSYRGQNANMHMCEAMIAAYEASGEQRYLDRALVLAENMTRRQAAKADGLVWEHYDPQWNIDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLMLLDRYAPVDWLLPTAQHLFDVAVERSWDTQRGGLYYGFDPDGNVCDDDKYFWVQAESLAAAALLAQCSGDDRYWQWYDKLWAYSWAHMIDHQYGAWYRILDADNRKYSDEKSPAGKTDYHTMGACYEVLNVLRPAA
>NZ_CP017020.1|WP_033481666.1|3143432_3144419_-|carbohydrate-kinase
MSATKHQVVCFGEALIDMLALPQAGPDQARTFAQYAGGAPANVAVAVARLGGAAHFVGMLGRDMFGDFLLQSLQQSGVATDGIVRTDQAKTALAFVALDDAGERSFSFYRPPAADLLFRPEHFAADGFTQAAVLHVCSNSMTEPQIAQCTLDGMRRARADGAIVSLDLNLRPMLWPQDVDPAALLWEALALADVVKLSREELEYLAGTLDGDASAVTQKLWQGKASWLLVTDGGGPVHWQTRTDAGQVPAFQVQVRDSTAAGDAFVGGLLYQLATRAASLEQLCGDSAAINEVIRFAAAVGALAVTRKGAFAAMPSIDDVHSLIQEQS
>NZ_CP017020.1|WP_005913776.1|3144415_3145726_-|L-fucose:H+-symporter-permease
MVSLSTQSSVPSGNKAPVNNGVALSVVTTIFFMWGFLTCLNDILIPHLKAVFELNFAQAMLVQFTFFGAYFLMSLPAGWLVNRLGYKQGIVAGLAVAAVGALGFWPAAELRVYSAFLGALFVLATGITILQVAANPYVALLGPERSASSRLTLAQALNSLGTAIAPLLGGWLILSNTVMSGDQLKALPEAEQLAYRVQEAQAVQGPYIGLGIVLFLLAIFVFLFRLPALTDASAQKDDSTHSLLDALQYPHVRFGVLAIFFYVGAEVAIGSLMVNYFSLPQIGGFTEREATKYVSAYWTLAMIGRFIGSALLAKLSPRVLLSVFAAINAVLLGLTMASGGMLAVYALVAIGLFNSIMFPTIFTLGIERLGPLTGRASSLLIMAIVGGAIVPYLQGLLADSIGLHESFVLPLLCYLYIVFYGIWGSRLRGALAEARA
>NZ_CP017020.1|WP_033481665.1|3145739_3146915_-|LacI-family-DNA-binding-transcriptional-regulator
MPLHASFFHRKACHVTPAKPTPEMTADDATPGARRGAVTLRDIAGAIGVSRATVSLVLRGSPLVHASTRARVEAELDRQNYVYNRAAANLRQRTSSSVALVINDLSNPFFAEFAAGVDEALGAAGYVTLLGSTGESTQRQQAVLTSLMEHTPAGIILSPAEGSQAQALSQVLGRQRNVVLFNREVEGAQWDLLALDNAQGAFVACSHLIAQGHRRIVFFGGHAASSSCRQRRAGYARAMQEADLETHYVESAPNRQDAAVCGAGLLNSTAQAATAAVCYNDTVALGLMAALAKHGLVPGRDFAVTGFDDIAEAALFTPALTTLAADPRARGRQAAQLVLQRIGSPELAAQQLTAAVALNIRASSACGPTTRMSPPPPSGPSAHSPTKASGR
>NZ_CP017020.1|WP_033481663.1|3147055_3147901_-|transporter
MVLHMSLWSKSLKSNAVAAVVSRAPVRVPVRAPRRTASALAMLALCVASGHAAAQADDAPAFDRPGIPFAAEALQPGAFAWEQVLPDASTDRSGGQRTTQYTADTLLRLGLFQDVELQLGSDSYNWQHGGGARVRGGGDSSVGLKVALPSRSENFHWAALGTYSIPTGSPAFSDGYSRELGVTASWDLAQQRAIALYVNYARDDDGHTWTFSPNYTFFSGDHFSSYVEAGLDTGSEHARVAGAGGAWQLPHAMQLDVSVLRGLTSESPDWQGGIGLSIAFE
>NZ_CP017020.1|WP_005913773.1|3148228_3148981_-|DUF2058-family-protein
MQIATAMSDTLRDQLLGLGFKSAPKPERKPDARPAARAHGNGGKPAPGGNRPGQARGPQRPHAAAATDGHGERKPAGRPERRHDGKPGAAPRPQHPAADRRGPRPARTREDIDLAKAYAIRAQREKDERIEAERVKQEEARLRREAKAKLEALVKDKGLNDAAADIARHFPYGGKIKRIYVNADQLKALNAGELGVLQLNGRYLLVTAELLAEAEAVFAPSVALKVDPNAPAGEDPYADPKYQVPDDLVW
>NZ_CP017020.1|WP_003483700.1|3148981_3149218_-|hypothetical-protein
MHEQLPLQDRALEARLIELETRLSFQEQALNELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADAADEPPPPHY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017020_1	1.11\|27471\|31\|NZ_CP017020\|CRISPRCasFinder	27471-27501	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934511	6	0.806
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614842-1614875	6	0.824
NZ_CP017020_1	1.11\|27471\|31\|NZ_CP017020\|CRISPRCasFinder	27471-27501	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	150331-150361	7	0.774
NZ_CP017020_1	1.11\|27471\|31\|NZ_CP017020\|CRISPRCasFinder	27471-27501	31	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	81610-81640	7	0.774
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	MH271303	Microbacterium phage MementoMori, complete genome	20739-20772	8	0.765
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	MN813682	Microbacterium phage Matzah, complete genome	21015-21048	8	0.765
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	MK937591	Microbacterium phage Cinna, complete genome	21039-21072	8	0.765
NZ_CP017020_1	1.14\|27639\|31\|NZ_CP017020\|CRISPRCasFinder	27639-27669	31	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	380719-380749	8	0.742
NZ_CP017020_1	1.5\|27576\|38\|NZ_CP017020\|CRT	27576-27613	38	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614844-1614881	10	0.737
NZ_CP017020_1	1.6\|27633\|35\|NZ_CP017020\|CRT	27633-27667	35	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	138975-139009	10	0.714
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72477	11	0.676
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22180	12	0.647
NZ_CP017020_1	1.13\|27582\|34\|NZ_CP017020\|CRISPRCasFinder	27582-27615	34	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116465-116498	12	0.647

1. spacer 1.11|27471|31|NZ_CP017020|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * **

2. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .*

3. spacer 1.11|27471|31|NZ_CP017020|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

4. spacer 1.11|27471|31|NZ_CP017020|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

5. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

6. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

7. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

8. spacer 1.14|27639|31|NZ_CP017020|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

9. spacer 1.5|27576|38|NZ_CP017020|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

agcatcctcgccgagcgcggcagccagatcagtggcgg	CRISPR spacer
atgttcttcgtcgagcgcggcagccagatcatggggct	Protospacer
*   **.***.********************  **

10. spacer 1.6|27633|35|NZ_CP017020|CRT matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

agcatcgggctggtgggaaccgagctcggcaaggg	CRISPR spacer
agcatcgggcgggtgggcaccgagccgaccatcat	Protospacer
********** ****** *******. . **  .

11. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * ..

12. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

13. spacer 1.13|27582|34|NZ_CP017020|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1179658 : 1306085

105

Stenotrophomonas_phage(25.93%)

capsid,tail,transposase,terminase,holin,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942126.1\|1179658_1180815_-\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_005915848.1\|1181691_1182153_-	cell wall hydrolase	NA	NA	NA	NA
WP_005915850.1\|1183515_1185555_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_005915853.1\|1185759_1186782_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_005915855.1\|1187197_1188295_+	OmpA family protein	NA	NA	NA	NA
WP_011050648.1\|1188487_1189003_+	hypothetical protein	NA	NA	NA	NA
WP_033479672.1\|1189022_1189883_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_005915861.1\|1189833_1190226_-	hypothetical protein	NA	NA	NA	NA
WP_005915864.1\|1190228_1191437_-	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	1.1e-19	26.6
WP_005915866.1\|1191527_1192625_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005915868.1\|1192628_1193489_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
WP_005915870.1\|1193485_1194439_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
WP_005915872.1\|1194446_1195478_+	sulfate/molybdate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-25	32.2
WP_003490453.1\|1195760_1196477_+	hypothetical protein	NA	NA	NA	NA
WP_005915874.1\|1197219_1198242_-	L-threonine 3-dehydrogenase	NA	NA	NA	NA
WP_033481917.1\|1198766_1201097_-	TonB-dependent receptor	NA	NA	NA	NA
WP_005915879.1\|1201295_1203377_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_011050659.1\|1203978_1204164_+	hypothetical protein	NA	NA	NA	NA
WP_005915881.1\|1204257_1204902_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_125825479.1\|1204921_1205500_+	hypothetical protein	NA	NA	NA	NA
WP_005915883.1\|1205631_1206930_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_005915885.1\|1206997_1208032_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_005915887.1\|1208245_1208992_+	CvpA family protein	NA	NA	NA	NA
WP_003483730.1\|1209022_1210489_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.1e-85	39.9
WP_005915889.1\|1210684_1211509_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_005915893.1\|1212123_1213377_+	peptidyl-Asp metalloendopeptidase	NA	NA	NA	NA
WP_005915895.1\|1213511_1213931_+	hypothetical protein	NA	NA	NA	NA
WP_005915897.1\|1214115_1214859_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_005915899.1\|1215343_1215886_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005915901.1\|1215866_1217003_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_003483745.1\|1217225_1218752_-	exopolyphosphatase	NA	NA	NA	NA
WP_003483747.1\|1218924_1221027_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_005915906.1\|1221139_1222468_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	6.4e-29	33.3
WP_003483753.1\|1222540_1223230_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	1.0e-33	35.7
WP_033481919.1\|1223412_1225059_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_005915911.1\|1225208_1225517_+	glutaredoxin 3	A0A2L0UZG6	Agrobacterium_phage	3.6e-07	43.2
WP_003483760.1\|1225513_1225909_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003483762.1\|1226135_1227143_+	isocitrate dehydrogenase	NA	NA	NA	NA
WP_005915913.1\|1227281_1228043_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_005915915.1\|1228751_1229378_+	hypothetical protein	NA	NA	NA	NA
WP_089504397.1\|1230204_1231291_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_164513526.1\|1232057_1232285_+	hypothetical protein	NA	NA	NA	NA
WP_125825480.1\|1234090_1234411_+	hypothetical protein	NA	NA	NA	NA
WP_005917750.1\|1234428_1234881_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	3.6e-40	58.8
WP_005917748.1\|1234868_1235288_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	7.4e-40	63.7
WP_005917746.1\|1235284_1235773_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	3.8e-27	50.3
WP_005917743.1\|1235772_1236411_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	3.9e-48	60.4
WP_005917740.1\|1236410_1236686_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	5.1e-21	58.6
WP_005917737.1\|1236678_1237035_-	membrane protein	V9IQG9	Stenotrophomonas_phage	5.9e-22	56.1
WP_005917735.1\|1237039_1237249_-\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_005917732.1\|1237248_1237716_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	4.1e-31	49.7
WP_005917729.1\|1237812_1238532_-\|terminase	phage-related terminase	Q9ZXM2	Pseudomonas_virus	5.0e-68	62.1
WP_005917726.1\|1238535_1239555_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	3.9e-135	70.8
WP_005917723.1\|1239613_1240456_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	8.4e-67	52.7
WP_005917720.1\|1240577_1242362_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	2.7e-272	76.5
WP_095689862.1\|1242680_1243768_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_005918009.1\|1243898_1246031_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_005918005.1\|1246524_1247412_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	6.0e-31	32.0
WP_033479676.1\|1247589_1248066_+	hypothetical protein	NA	NA	NA	NA
WP_003490678.1\|1248091_1248769_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	7.4e-05	27.4
WP_005917998.1\|1248761_1250096_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_080598376.1\|1250198_1250594_-	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA
WP_089504397.1\|1251006_1252093_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_125825481.1\|1252312_1252699_-	hypothetical protein	NA	NA	NA	NA
WP_157733688.1\|1252695_1252845_-	hypothetical protein	NA	NA	NA	NA
WP_087942126.1\|1253775_1254931_+\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_005915836.1\|1255480_1256089_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_003491180.1\|1256102_1256966_-	prepilin peptidase	NA	NA	NA	NA
WP_069288196.1\|1256972_1258235_-	type II secretion system F family protein	NA	NA	NA	NA
WP_005915833.1\|1258345_1260307_-	hypothetical protein	NA	NA	NA	NA
WP_033481911.1\|1260373_1260790_-	pilin	NA	NA	NA	NA
WP_157733689.1\|1261139_1261517_+	EamA family transporter	NA	NA	NA	NA
WP_005915828.1\|1261521_1262316_+	glycosyltransferase	NA	NA	NA	NA
WP_050554799.1\|1262318_1263359_+	glycosyltransferase	NA	NA	NA	NA
WP_157733690.1\|1263351_1264008_+	hypothetical protein	NA	NA	NA	NA
WP_005915821.1\|1264105_1265842_+	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA
WP_005915819.1\|1265938_1266058_+	hypothetical protein	NA	NA	NA	NA
WP_005915817.1\|1266213_1266357_+	hypothetical protein	NA	NA	NA	NA
WP_005915815.1\|1266543_1267938_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_005915814.1\|1268262_1269876_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005915812.1\|1270107_1271277_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_005915809.1\|1271301_1272177_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_005915804.1\|1272592_1272964_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_005915802.1\|1272986_1274627_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.3e-95	38.0
WP_005915800.1\|1274645_1275623_-	hypothetical protein	A0A0N9SJH5	Pseudomonas_phage	8.6e-55	40.4
WP_005915798.1\|1275909_1276791_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_003488615.1\|1276911_1277907_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_033479555.1\|1277908_1278721_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_161632298.1\|1278705_1279248_+	DUF4166 domain-containing protein	NA	NA	NA	NA
WP_005915791.1\|1279234_1279669_+	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA
WP_005915788.1\|1279821_1281690_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.3e-14	27.9
WP_005915786.1\|1282409_1284887_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA
WP_003488630.1\|1285487_1286855_-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA
WP_005915783.1\|1286851_1288630_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_005915781.1\|1288678_1289437_-	trehalose-phosphatase	NA	NA	NA	NA
WP_005915778.1\|1289658_1292094_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.7e-14	23.4
WP_005915776.1\|1292322_1292796_+	DUF3574 domain-containing protein	NA	NA	NA	NA
WP_033481905.1\|1292762_1293827_+	hypothetical protein	NA	NA	NA	NA
WP_003488646.1\|1293964_1295566_+	hypothetical protein	NA	NA	NA	NA
WP_005915768.1\|1297080_1297899_+	DUF3014 domain-containing protein	NA	NA	NA	NA
WP_003488653.1\|1298126_1298834_-	glutathione S-transferase	NA	NA	NA	NA
WP_005915765.1\|1298879_1299188_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_005915762.1\|1299557_1301717_+	TonB-dependent receptor	NA	NA	NA	NA
WP_005915760.1\|1301785_1303114_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_087942126.1\|1304929_1306085_+\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5

DBSCAN-SWA_2

1781480 : 1850686

Staphylococcus_phage(12.5%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005912929.1\|1781480_1784123_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.7e-174	40.2
WP_005912936.1\|1784699_1785344_+	hypothetical protein	NA	NA	NA	NA
WP_003486816.1\|1785366_1786395_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_033481585.1\|1786391_1787261_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_005912943.1\|1787317_1787731_+	ribosome silencing factor	NA	NA	NA	NA
WP_005912944.1\|1787889_1789425_-	DUF839 domain-containing protein	NA	NA	NA	NA
WP_005912945.1\|1789546_1790017_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_005912947.1\|1790095_1790770_-	energy transducer TonB	NA	NA	NA	NA
WP_005912949.1\|1791081_1794192_-	TonB-dependent receptor	NA	NA	NA	NA
WP_005912951.1\|1794543_1795278_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_005912953.1\|1795416_1795989_+	Maf-like protein	NA	NA	NA	NA
WP_003486835.1\|1795988_1797488_+	ribonuclease G	NA	NA	NA	NA
WP_005912955.1\|1797657_1801578_+	TIGR02099 family protein	NA	NA	NA	NA
WP_005912956.1\|1801593_1802346_-	hypothetical protein	NA	NA	NA	NA
WP_005912957.1\|1802445_1803891_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_005912958.1\|1804060_1804642_-	ribosome-associated protein	NA	NA	NA	NA
WP_005912967.1\|1804789_1806157_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_016849602.1\|1806474_1806942_+	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_005912970.1\|1807011_1808088_-\|protease	protease	NA	NA	NA	NA
WP_003486850.1\|1808542_1809418_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_003486852.1\|1809419_1809680_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_033479125.1\|1809711_1811013_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_005912972.1\|1811382_1813086_-	alkaline phosphatase	NA	NA	NA	NA
WP_005912974.1\|1813228_1814569_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_005912975.1\|1814578_1815415_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003486865.1\|1815649_1816141_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003486867.1\|1816348_1817098_-	C40 family peptidase	A0A0K2SUC1	Clostridium_phage	1.2e-19	38.5
WP_003486869.1\|1817207_1817750_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	6.1e-18	39.3
WP_003486870.1\|1817859_1818339_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_005912977.1\|1818574_1819819_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_005912978.1\|1819826_1821077_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005912980.1\|1821073_1822444_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	4.9e-40	26.0
WP_080598298.1\|1822923_1823322_+	cysteine methyltransferase	NA	NA	NA	NA
WP_003486879.1\|1823362_1824058_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_005912987.1\|1824277_1826293_-	M13 family metallopeptidase	NA	NA	NA	NA
WP_005912989.1\|1826477_1828574_-	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	5.7e-72	29.8
WP_031423362.1\|1828958_1831061_-	peptidase	A0A1V0SHG2	Klosneuvirus	9.7e-72	27.6
WP_005912991.1\|1831510_1833106_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005912992.1\|1833217_1836280_-	TonB-dependent receptor	NA	NA	NA	NA
WP_005912994.1\|1839987_1840839_+	iron-sulfur cluster carrier protein ApbC	Q8JL10	Natrialba_phage	9.3e-05	27.0
WP_005912996.1\|1840935_1841505_+	dCTP deaminase	S5VM63	Pseudomonas_phage	4.1e-73	70.6
WP_003486896.1\|1841660_1841846_-	hypothetical protein	NA	NA	NA	NA
WP_003486900.1\|1842426_1842594_-	hypothetical protein	NA	NA	NA	NA
WP_005912999.1\|1842621_1843056_-	HIT family protein	NA	NA	NA	NA
WP_005913000.1\|1843052_1843715_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_005913001.1\|1844281_1845544_-	hypothetical protein	NA	NA	NA	NA
WP_089504397.1\|1845582_1846670_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_005914316.1\|1848602_1849109_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_005914314.1\|1849219_1850686_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

2509887 : 2565939

uncultured_Mediterranean_phage(11.11%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005914460.1\|2509887_2511024_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_005914461.1\|2511020_2511479_-	NUDIX hydrolase	NA	NA	NA	NA
WP_005914463.1\|2511729_2512050_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.0e-12	45.7
WP_005914464.1\|2512192_2514475_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.9e-175	44.9
WP_002813418.1\|2514757_2514976_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_005914466.1\|2515056_2515806_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_005914467.1\|2516068_2517187_-	N-acetyltransferase	NA	NA	NA	NA
WP_003482910.1\|2517244_2518213_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.5e-64	44.5
WP_003482906.1\|2518496_2520854_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	2.5e-84	45.8
WP_005914468.1\|2521004_2522933_+	DUF3857 and transglutaminase domain-containing protein	NA	NA	NA	NA
WP_015472033.1\|2522997_2523669_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_033481749.1\|2523790_2528044_-	type III effector	NA	NA	NA	NA
WP_003482897.1\|2528213_2529587_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.4e-74	38.2
WP_003482896.1\|2529765_2530167_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_003482893.1\|2530483_2531689_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_005914474.1\|2531845_2534218_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_003482890.1\|2534242_2534875_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005914476.1\|2535092_2535518_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-18	40.9
WP_005921296.1\|2535536_2536742_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_003482886.1\|2536752_2537541_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_005914478.1\|2537537_2538398_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005914479.1\|2538468_2539107_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005914480.1\|2539106_2540324_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_003482878.1\|2540334_2541732_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_005914481.1\|2542042_2543263_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_005914482.1\|2543614_2544757_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_033481750.1\|2545003_2547667_+	TonB-dependent receptor	NA	NA	NA	NA
WP_003482865.1\|2547749_2547965_+	hypothetical protein	NA	NA	NA	NA
WP_005914486.1\|2548344_2548917_+	DUF4142 domain-containing protein	NA	NA	NA	NA
WP_005914487.1\|2548920_2549451_+	hypothetical protein	NA	NA	NA	NA
WP_005914488.1\|2549464_2550634_+	glutathione-dependent formaldehyde dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	1.9e-08	28.5
WP_087942126.1\|2552162_2553318_+\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_005918020.1\|2555259_2555532_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_005934416.1\|2555720_2555921_+\|transposase	transposase	NA	NA	NA	NA
WP_078514874.1\|2556041_2556593_-	type III effector	NA	NA	NA	NA
WP_154138535.1\|2557150_2557327_+	hypothetical protein	NA	NA	NA	NA
WP_005918028.1\|2557339_2557531_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_033455135.1\|2557547_2558450_-	hypothetical protein	NA	NA	NA	NA
WP_033480615.1\|2558449_2559682_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	4.7e-50	33.2
WP_089504397.1\|2560310_2561397_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_033837207.1\|2562072_2563620_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_005918049.1\|2564967_2565939_+\|transposase	IS1595-like element IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2783448 : 2855025

Tupanvirus(25.0%)

transposase,tRNA,integrase

attL 2799227:2799286|attR 2847146:2848341

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005915362.1\|2783448_2784894_-\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	4.4e-39	27.5
WP_162197241.1\|2785139_2785763_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_033479714.1\|2786078_2786822_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_005915357.1\|2786922_2788227_-	threonine synthase	NA	NA	NA	NA
WP_005915355.1\|2788388_2788703_+	EthD family reductase	NA	NA	NA	NA
WP_078566167.1\|2788777_2789746_-	homoserine kinase	NA	NA	NA	NA
WP_005915351.1\|2789787_2792295_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_082335458.1\|2793463_2794180_-	S-layer family protein	NA	NA	NA	NA
WP_078514811.1\|2794736_2794973_-	hypothetical protein	NA	NA	NA	NA
WP_005918353.1\|2794989_2795370_-	TNT domain-containing protein	NA	NA	NA	NA
2799227:2799286	attL	NA	NA	NA	NA
WP_089504397.1\|2799296_2800383_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_164513528.1\|2809254_2813481_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	4.1e-21	29.3
WP_005916837.1\|2813551_2815252_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_005916834.1\|2815987_2817946_+	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA
WP_005916820.1\|2817927_2819826_+	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA
WP_005916817.1\|2819829_2821083_+	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA
WP_005916814.1\|2821079_2821526_+	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA
WP_005916811.1\|2822160_2823618_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	3.9e-11	24.8
WP_069288199.1\|2823846_2824401_-	hypothetical protein	NA	NA	NA	NA
WP_033481971.1\|2824629_2830245_-	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_005916803.1\|2830358_2831111_+	abortive infection family protein	NA	NA	NA	NA
WP_033481969.1\|2831409_2833053_-	MobA/MobL family protein	NA	NA	NA	NA
WP_005916793.1\|2833547_2835362_+	MchC protein	NA	NA	NA	NA
WP_089140893.1\|2835478_2836566_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_005917781.1\|2837033_2838098_+	hypothetical protein	NA	NA	NA	NA
WP_005917783.1\|2838155_2838656_+	hypothetical protein	NA	NA	NA	NA
WP_080598372.1\|2838909_2841483_-	ATP-binding protein	NA	NA	NA	NA
WP_080598373.1\|2842852_2844847_+	hypothetical protein	NA	NA	NA	NA
WP_005917791.1\|2844843_2846142_+	ATP-binding protein	NA	NA	NA	NA
WP_089504397.1\|2847215_2848302_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_100225295.1\|2849675_2850290_+	hypothetical protein	NA	NA	NA	NA
2847146:2848341	attR	NA	NA	NA	NA
WP_089504397.1\|2850399_2851487_-\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_005918561.1\|2851572_2851962_+	hypothetical protein	NA	NA	NA	NA
WP_005918563.1\|2852011_2853325_-	hypothetical protein	NA	NA	NA	NA
WP_155270882.1\|2853338_2853842_-	hypothetical protein	NA	NA	NA	NA
WP_089504421.1\|2853923_2855025_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.1e-45	41.6

DBSCAN-SWA_5

2937491 : 2948269

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033479136.1\|2937491_2939450_-	PAS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.6e-13	42.8
WP_003481884.1\|2940749_2940962_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.3e-13	76.5
WP_005915037.1\|2941101_2943750_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.3e-85	40.0
WP_003481873.1\|2943851_2944340_-	recombination regulator RecX	NA	NA	NA	NA
WP_003481871.1\|2944658_2945693_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.1e-114	61.3
WP_005915033.1\|2945865_2946507_-	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_005915030.1\|2946592_2948269_-	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	1.9e-41	29.4

DBSCAN-SWA_6

3717704 : 3754881

Leptospira_phage(28.57%)

transposase,protease,integrase

attL 3727031:3727046|attR 3759645:3759660

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003483788.1\|3717704_3718991_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-137	59.9
WP_002806026.1\|3719116_3719743_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.0e-56	57.4
WP_005913863.1\|3719835_3721128_-	trigger factor	NA	NA	NA	NA
WP_005913860.1\|3721662_3722931_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_125825507.1\|3723149_3723344_+	hypothetical protein	NA	NA	NA	NA
WP_005913859.1\|3723546_3724536_-	chemotaxis protein CheB	NA	NA	NA	NA
WP_089504397.1\|3724882_3725969_+\|transposase	IS3-like element ISXac2 family transposase	NA	NA	NA	NA
WP_089504421.1\|3726205_3727308_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.1e-45	41.6
3727031:3727046	attL	NA	NA	NA	NA
WP_087942126.1\|3727886_3729043_-\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-39	37.5
WP_005917827.1\|3729226_3729619_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005917824.1\|3729890_3730115_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_005917821.1\|3730121_3731108_+	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	1.8e-23	27.9
WP_005917818.1\|3731117_3732254_+	hypothetical protein	NA	NA	NA	NA
WP_005917815.1\|3732250_3733885_+	UBA/THIF-type NAD/FAD-binding protein	NA	NA	NA	NA
WP_033482039.1\|3733872_3734349_+	hypothetical protein	NA	NA	NA	NA
WP_007971690.1\|3734953_3735787_+	VWA domain-containing protein	NA	NA	NA	NA
WP_033482037.1\|3735789_3736536_+	hypothetical protein	NA	NA	NA	NA
WP_005917807.1\|3736532_3738191_+	hypothetical protein	NA	NA	NA	NA
WP_095689870.1\|3740096_3741198_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.2e-44	41.9
WP_100225287.1\|3741398_3741476_-	hypothetical protein	NA	NA	NA	NA
WP_080598327.1\|3741539_3743651_-	DNA cytosine methyltransferase	K4HZD0	Acidithiobacillus_phage	3.2e-14	25.6
WP_005914556.1\|3744929_3745997_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_005914555.1\|3746089_3746323_-	hypothetical protein	NA	NA	NA	NA
WP_005914554.1\|3746460_3747135_-	hypothetical protein	NA	NA	NA	NA
WP_005914552.1\|3747238_3747877_-	hypothetical protein	NA	NA	NA	NA
WP_033481760.1\|3748977_3749169_-	hypothetical protein	NA	NA	NA	NA
WP_005914550.1\|3749457_3749952_-	hypothetical protein	NA	NA	NA	NA
WP_005914549.1\|3749992_3750499_-	hypothetical protein	NA	NA	NA	NA
WP_005914548.1\|3751766_3751991_-	hypothetical protein	NA	NA	NA	NA
WP_005914547.1\|3752164_3752560_-	H-NS histone family protein	NA	NA	NA	NA
WP_125825509.1\|3752825_3753029_+	hypothetical protein	NA	NA	NA	NA
WP_125825510.1\|3753029_3753527_-	hypothetical protein	NA	NA	NA	NA
WP_033481756.1\|3753555_3754881_-\|integrase	site-specific integrase	NA	NA	NA	NA
3759645:3759660	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4132759 : 4144528

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005913455.1\|4132759_4134106_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1
WP_005913454.1\|4134151_4135555_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	30.0
WP_005913453.1\|4135837_4137004_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	4.7e-116	58.1
WP_005913452.1\|4137343_4138243_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.1e-27	36.2
WP_005913451.1\|4138239_4138797_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.1e-43	48.9
WP_005913450.1\|4138793_4139681_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.5e-94	57.5
WP_005913448.1\|4139732_4140788_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-82	47.1
WP_005913446.1\|4141008_4141755_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_005913442.1\|4141754_4142699_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_005920793.1\|4142862_4143591_+	hypothetical protein	NA	NA	NA	NA
WP_005913435.1\|4143571_4144528_+	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	1.8e-25	27.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10900

Shigella_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005918428.1\|2152_2851_+	UPF0149 family protein	NA	NA	NA	NA
WP_069288208.1\|3549_8064_-	avirulence protein	NA	NA	NA	NA
WP_095689879.1\|8280_8448_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_033482107.1\|8491_9637_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_095689877.1\|9755_10900_-\|transposase	IS3-like element ISXc8 family transposase	U5P429	Shigella_phage	7.7e-47	41.0

DBSCAN-SWA_2

19510 : 20598

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504397.1\|19510_20598_-\|transposase	IS3-like element ISXac2 family transposase	S5WIU1	Leptospira_phage	2.9e-43	36.8

DBSCAN-SWA_3

26981 : 29483

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005918378.1\|26981_27533_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.7e-39	50.0
WP_005918376.1\|27580_27787_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_005918374.1\|27802_28609_-	hypothetical protein	NA	NA	NA	NA
WP_005918372.1\|28625_28841_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_005918369.1\|28853_29483_-	AAA family ATPase	A2I303	Vibrio_virus	6.7e-53	55.8

DBSCAN-SWA_4

38756 : 40320

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033482061.1\|38756_39407_-	ParA family protein	D4HTX7	Vibrio_phage	8.3e-14	31.0
WP_005918086.1\|39505_39706_-	hypothetical protein	NA	NA	NA	NA
WP_005918089.1\|39702_40320_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.3e-32	44.8

DBSCAN-SWA_5

44768 : 45870

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095689870.1\|44768_45870_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.2e-44	41.9

DBSCAN-SWA_6

49301 : 50458

Shigella_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125825525.1\|49301_50458_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.6e-47	41.0

DBSCAN-SWA_7

54107 : 58814

Leptospira_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089504397.1\|54107_55195_-\|transposase	IS3-like element ISXac2 family transposase	S5WIU1	Leptospira_phage	2.9e-43	36.8
WP_069288214.1\|55274_55973_+	hypothetical protein	NA	NA	NA	NA
WP_005918301.1\|56062_56350_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_005918303.1\|56515_56977_+	hypothetical protein	NA	NA	NA	NA
WP_003491216.1\|57890_58814_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.8e-39	51.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection