CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014618	Pasteurella multocida strain Pm-3, complete genome	2 crisprs	cas1,cas3-cas2,DEDDh,cas14j,DinG,cas5f,cas8f,cas3,csa3	1	20	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014618_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014618_1

217058-217986

Unclear

Consensus_repeat	Method
GTTCACCATCGTGTAGATGGCTTAGAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	CRT

15 spacers

cas6f,cas1,cas3-cas2

The CRISPR arrays of NZ_CP014618_1

>merge|NZ_CP014618|1|217058-217986|PILER-CR,CRISPRCasFinder,CRT
GTTCACCATCGTGTAGATGGCTTAGAAAATTCGTGACAAAAGACGAATATAAGAAAAGAAGTTCACCATCGTGTAGATGGCTTAGAAAGTCGTTGAAACGGCACCATGGGCGTTTGCATTTGTTCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAATTCGATTTCCAGTGCCGAAAATCCATGCCCTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATCGTTCACCATCGTGTAGATGGCTTAGAAACACAACATGTGCTGAAAGTGCGTGAGATTTGAGTTCACCATCGTGTAGATGGCTTAGAAATACCCGATGTTAGAGGCAATCAAAGTGGAGCTGTTCACCATCGTGTAGATGGCTTAGAAAAAAGTCTCATTTAACACCGCGCGACGCTGGAAGTTCACCATCGTGTAGATGGCTTAGAAAAAGCCCACCTTGCGCTTGAACAGATGAATTAAGTTCACCATCGTGTAGATGGCTTAGAAATTTAAGCTACGTTTATCCGCAAGATTCACTACGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATTGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGAGTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP014618|1|1|217058-217626|PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA

>NZ_CP014618|1|1|217058-217986|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP014618|1|1|217058-217986|CRT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014618.1\|WP_046339044.1\|210690_210930_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014618.1\|WP_005721379.1\|229371_229695_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP014618.1\|WP_061406043.1\|210179_210698_-\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|226831
NZ_CP014618.1\|WP_005721328.1\|227469_228684_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP014618.1\|WP_064775729.1\|211139_211385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014618.1\|WP_061406042.1\|209910_210102_-\|ANR-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP014618.1\|WP_014325848.1\|219116_222437_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_CP014618.1\|WP_064775732.1\|214539_214776_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NZ_CP014618.1\|WP_005721377.1\|228915_229302_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP014618.1\|WP_005721326.1\|226957_227422_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP014618.1\|WP_064775730.1\|211405_211609_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014618.1\|WP_014325847.1\|216356_216917_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|274202
NZ_CP014618.1\|WP_014325850.1\|226162_226879_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NZ_CP014618.1\|WP_081273992.1\|215015_215489_+\|ci-repressor-like-protein	unknown	unknown	gnl\|CDD\|367032
NZ_CP014618.1\|WP_005753664.1\|222494_224351_+\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NZ_CP014618.1\|WP_064775731.1\|212552_214556_-\|transposase	unknown	unknown	gnl\|CDD\|367246
NZ_CP014618.1\|WP_014325849.1\|225145_225949_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
NZ_CP014618.1\|WP_005725867.1\|224491_225082_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014618.1\|WP_005753659.1\|218155_219136_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP014618.1\|WP_016533375.1\|211608_212526_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398

Protein	Function_ID	Function_description	E-value
NZ_CP014618.1\|WP_005753659.1\|218155_219136_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP014618.1\|WP_061406043.1\|210179_210698_-\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|226831	COG4396, COG4396, Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only].	2.72979e-67
NZ_CP014618.1\|WP_005721328.1\|227469_228684_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP014618.1\|WP_014325848.1\|219116_222437_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP014618.1\|WP_064775732.1\|214539_214776_-\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	6.02371e-24
NZ_CP014618.1\|WP_005721377.1\|228915_229302_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.51567e-94
NZ_CP014618.1\|WP_005721326.1\|226957_227422_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
NZ_CP014618.1\|WP_005721379.1\|229371_229695_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.36459e-65
NZ_CP014618.1\|WP_014325847.1\|216356_216917_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.09974e-90
NZ_CP014618.1\|WP_081273992.1\|215015_215489_+\|ci-repressor-like-protein	gnl\|CDD\|367032	pfam02316, HTH_Tnp_Mu_1, Mu DNA-binding domain. This family consists of MuA-transposase and repressor protein CI. These proteins contain homologous DNA-binding domains at their N-termini which compete for the same DNA site within the Mu bacteriophage genome.	1.21248e-08
NZ_CP014618.1\|WP_005753664.1\|222494_224351_+\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP014618.1\|WP_064775731.1\|212552_214556_-\|transposase	gnl\|CDD\|367246	pfam02914, DDE_2, Bacteriophage Mu transposase.	2.48078e-42
NZ_CP014618.1\|WP_014325849.1\|225145_225949_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	9.50997e-153
NZ_CP014618.1\|WP_014325850.1\|226162_226879_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.89077e-117
NZ_CP014618.1\|WP_016533375.1\|211608_212526_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	9.77006e-55

>NZ_CP014618.1|WP_014325847.1|216356_216917_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPLSTECRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHCHLKSASTGQRFILAVKENRMPQSCVGVFNAYGLSNSATVPHF
>NZ_CP014618.1|WP_081273992.1|215015_215489_+|ci-repressor-like-protein
MIQEWYEIKDLIGVEGLPTTVQGLTKKAKLENWQRRRITGIKGKAFEYYVGDMPLAVQQVLGFKTDETNPQPLLSERIDHIMAVINSLEAKVKELEEPTLDSLTDTLDQAEKRLVRWFRQCNKDRQAMLLSSAEVLADMSLKEQKESSEPLENCEVA
>NZ_CP014618.1|WP_064775732.1|214539_214776_-|transcriptional-regulator
MVKRNWSSKKIVYELHERNLTLEFLSKQAGLAPSTLKNALRVSYPKGERIIAEAIGVAPEVIWAERYAAREKRHVGRA
>NZ_CP014618.1|WP_064775731.1|212552_214556_-|transposase
MWVELKDILGLGSLPSTIGGLSKKVKLDGWERRLKQGVKGKIYEYSFSSLPQDVQKEYLLKHSEELKVNKENSDSNQQTMIESAWNVLASATFEQEKRAERRFQAVVKVARLVENKIPLMKAFEQVVALYATDSDDETISKGSLKRWWYKVKTHPQGIWLPLLLDRTERDNSCRWADISDKAWAFFCADYLRKSKPKFSVCYYRLTLAAEENGWTIPSLSSLKRKFYNEFTEAEIALARGGEHELRELTAPQIRTVMDLEAYEIVNGDGYQHNVFVDWYEDGRPPIRPKTWFWQDVRTRRILSYCVDDSENGDQIRQATLRMIKQYGIPKTILMDNTRAASDKQTTQQRKRGKRQTVGIKIDGMFDRLGIKVIRTLVFKGRGNGRAKPIERAFKRDSLPAYVDGDARLEAFFTGWSVTEKTEDYQFKKGVNKALFLEVLEQGVRLWNDKAGRETELGQGIFSADQLWARDYAQTRQTFATEEQLRQLMMLGESTKVDKHGRFTLKAGYVLNNQKNVYEAQALIGGNVGSVIVRYDPDDLHGTVHIYDKNGVYLCDGECVEKVAFNSEEGARVQKRLINEQRRITKKMVDNHEKLSEHEIAQYRKQFEQSAADFVEPAEKQAFSWTQFVDGNTVKTIKLDHELETETEEQNTLSFEQDLFNGLKQVQK
>NZ_CP014618.1|WP_016533375.1|211608_212526_-|AAA-family-ATPase
MTLAQQIQQILDSKTFMQRDIAQQSGISAGALSAYLKGTYAGNIDNIESALNNWLASQDKKQKVFVEAPHFIDIPTAKRVFGALDMAKLLPTMVTIYGASGVGKTKASQEYKKLNKNVWMITASPARATLSTILYELALELGINDAPRRKDRLSRMITKKLSGTQGLVIIDESDHLPYDALEEIRIIQEEADVGFALIGNDKVYTRIQGGVNQAHEYARLWSRIGNNCGIKHSTKADVKAVAQAWNLDTEDKELMNTLCDIGTKAGGLRALTQYLRLAAIAAKGKETVISLDLILQAKAHMQGVN
>NZ_CP014618.1|WP_064775730.1|211405_211609_-|hypothetical-protein
MKKYLLTLSLILTACTDVETCNLQCQKERANAEWKQEHGEFQPNLTPEQERYIVEWLVEHYPNGNKP
>NZ_CP014618.1|WP_064775729.1|211139_211385_-|hypothetical-protein
MKITITRNHPKVFQESARLVAEKFIKAQCVEALTLALIEGVEHFVLEGEEESKGGHSIKVVLKGSPEVIKSEVNTNEKKSL
>NZ_CP014618.1|WP_046339044.1|210690_210930_-|hypothetical-protein
MNWEQEYIMETYELPFLEKGLLIKCGQDTGKITGFKNGKVKVKLDNGKNVSYHPTWEMIYFDENNNVLADFTTGDKNNG
>NZ_CP014618.1|WP_061406043.1|210179_210698_-|host-nuclease-inhibitor-protein-Gam
MAKKATRIKTTAQVYVPQSREDVASDIKTIGDLNREITRLETEMNDKIAEITESYKGQFSPIQERIKNLSTGVQFWAEANRDQITNGGKTKTANLITGEVSWRVRNPSVKITGVDSVLQNLKVHGLTKFIRVKEEINKEAILNEKHEVAGIAGIKVVSGVEDFVITPFEQEI
>NZ_CP014618.1|WP_061406042.1|209910_210102_-|ANR-family-transcriptional-regulator
MAKHIELDFKALSKLASEAERGGDYKHATNLWQKAASLARKKINFEWCTNRKLFCQKMALRLF
>NZ_CP014618.1|WP_005753659.1|218155_219136_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQHEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>NZ_CP014618.1|WP_014325848.1|219116_222437_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEIAWQDAYSLQILTALSALLHDVGKSSVGFQTKLDKTKNAPRVADSYRHEWISVRLFEAMIEGCQTDQAWLERLANWQVFEETNPTWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQKTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAQQGSESAEDWLEDMQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFALQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVRYQQKDVIYHRPGFESHQHKLATHKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDEDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKHAVVQPWLAAALDTVLSDLAEQLNVVSPEWIAPTYLCASLPQYDGKLDWHYNEVYGFW
>NZ_CP014618.1|WP_005753664.1|222494_224351_+|response-regulator
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLREGYENGQYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDPEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>NZ_CP014618.1|WP_005725867.1|224491_225082_+|hypothetical-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>NZ_CP014618.1|WP_014325849.1|225145_225949_-|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDALQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAGTVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>NZ_CP014618.1|WP_014325850.1|226162_226879_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTHAIVYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>NZ_CP014618.1|WP_005721326.1|226957_227422_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>NZ_CP014618.1|WP_005721328.1|227469_228684_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>NZ_CP014618.1|WP_005721377.1|228915_229302_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEAK
>NZ_CP014618.1|WP_005721379.1|229371_229695_+|iron-sulfur-cluster-assembly-protein-IscA
MGISLTETAADRVRTFLANRGKGIGLRLGIKTSGCSGLAYVLEFVDELNPEDQVFEQHGVKIIVDAKSLVYLDGTELDFAKEGLNEGFKFNNPNVKDQCGCGESFHV

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Crispr_ID: NZ_CP014618_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014618_2

2276956-2278123

Unclear

I-F

Consensus_repeat	Method
GTTAACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTAACTGCCGTATAGGCAGCTTAGAAA	CRT
GTTAACTGCCGTATAGGCAGCTTAGAAA	PILER-CR

19 spacers

cas3

The CRISPR arrays of NZ_CP014618_2

>merge|NZ_CP014618|2|2276956-2278123|CRISPRCasFinder,CRT,PILER-CR
GTTAACTGCCGTATAGGCAGCTTAGAAAATTTTTCTTTTGCTGTAAAGACAAGCTGATCAGTTAACTGCCGTATAGGCAGCTTAGAAATGTTTCAAGCGAACGTACAGCAACAGTGACTGGTTAACTGCCGTATAGGCAGCTTAGAAATTGGACTTGTGTCAGTAACTGTAACCGCTCAAGTTAACTGCCGTATAGGCAGCTTAGAAAGTTGCAATTCAACGTGGTGAGCAAGAAATCAAGTTAACTGCCGTATAGGCAGCTTAGAAAGTTGGCCGCTACAAAATTGTCACTTTCAATACGTTAACTGCCGTATAGGCAGCTTAGAAAGCTGTATAAGCGGTTAAAAAAGTTATATTTTTGTTAACTGCCGTATAGGCAGCTTAGAAAATTATTTCTTTCAGGTGTTGGGGGGATTGAATGTTAACTGCCGTATAGGCAGCTTAGAAATTTTGAATGCTCATCACGCATTTGTTGCAACCGTTAACTGCCGTATAGGCAGCTTAGAAAGCTTGAAAGTGTTGGCTTGAAACTTTCGGGGCGTTAACTGCCGTATAGGCAGCTTAGAAATTGATCGTTTGCGCGAAATACCAATTTTTTTAGTTAACTGCCGTATAGGCAGCTTAGAAAAACAGCTCTTACACCAGCGCAAAAATTTGCGAGTTAACTGCCGTATAGGCAGCTTAGAAACAAAAGATTGAATTACATCATCGGCTACAGATGTTAACTGCCGTATAGGCAGCTTAGAAAGAAGCGGTATCAATTCTGAAAAGAAAAGGAATGTTAACTGCCGTATAGGCAGCTTAGAAAGCAATTTTGGGTATTCGTTTTGATTCTGAATAGTTAACTGCCGTATAGGCAGCTTAGAAAAAAAGCATTCTGTTTACGCGTAAAAGGATCAAGTTAACTGCCGTGTAGGCAGCTTAGAAAAGCTTTAAGCTCTGCAAATGCCGAACTCATACGTTAACTGCCGTGTAGGCAGCTTAGAAAGATTATTTTAAGCAACGGAGCGGAATTACACTGTTAACTGCCGTGTAGGTAGCTTAGAAAGTCATCTTCCAATTCTTCTGTTTTCTGCTCTTGTTAACTGCCGTGTAGGCAGCTTAGAAATAAAGCGATCTTGGCTCGATTATCAGATTGGTGTTAACTGCCGTATAGGCAGTTTCAATT

>NZ_CP014618|2|2|2276956-2278123|CRISPRCasFinder
GTTAACTGCCGTATAGGCAGCTTAGAAA	ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA
GTTAACTGCCGTATAGGCAGCTTAGAAA	TGTTTCAAGCGAACGTACAGCAACAGTGACTG
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTGGACTTGTGTCAGTAACTGTAACCGCTCAA
GTTAACTGCCGTATAGGCAGCTTAGAAA	GTTGCAATTCAACGTGGTGAGCAAGAAATCAA
GTTAACTGCCGTATAGGCAGCTTAGAAA	GTTGGCCGCTACAAAATTGTCACTTTCAATAC
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCTGTATAAGCGGTTAAAAAAGTTATATTTTT
GTTAACTGCCGTATAGGCAGCTTAGAAA	ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTTTGAATGCTCATCACGCATTTGTTGCAACC
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTGATCGTTTGCGCGAAATACCAATTTTTTTA
GTTAACTGCCGTATAGGCAGCTTAGAAA	AACAGCTCTTACACCAGCGCAAAAATTTGCGA
GTTAACTGCCGTATAGGCAGCTTAGAAA	CAAAAGATTGAATTACATCATCGGCTACAGAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCAATTTTGGGTATTCGTTTTGATTCTGAATA
GTTAACTGCCGTATAGGCAGCTTAGAAA	AAAAGCATTCTGTTTACGCGTAAAAGGATCAA
GTTAACTGCCGTGTAGGCAGCTTAGAAA	AGCTTTAAGCTCTGCAAATGCCGAACTCATAC
GTTAACTGCCGTGTAGGCAGCTTAGAAA	GATTATTTTAAGCAACGGAGCGGAATTACACT
GTTAACTGCCGTGTAGGTAGCTTAGAAA	GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT
GTTAACTGCCGTGTAGGCAGCTTAGAAA	TAAAGCGATCTTGGCTCGATTATCAGATTGGT
GTTAACTGCCGTATAGGCAGTTTCAATT

>NZ_CP014618|2|2|2276956-2278123|CRT
GTTAACTGCCGTATAGGCAGCTTAGAAA	ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA
GTTAACTGCCGTATAGGCAGCTTAGAAA	TGTTTCAAGCGAACGTACAGCAACAGTGACTG
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTGGACTTGTGTCAGTAACTGTAACCGCTCAA
GTTAACTGCCGTATAGGCAGCTTAGAAA	GTTGCAATTCAACGTGGTGAGCAAGAAATCAA
GTTAACTGCCGTATAGGCAGCTTAGAAA	GTTGGCCGCTACAAAATTGTCACTTTCAATAC
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCTGTATAAGCGGTTAAAAAAGTTATATTTTT
GTTAACTGCCGTATAGGCAGCTTAGAAA	ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTTTGAATGCTCATCACGCATTTGTTGCAACC
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTGATCGTTTGCGCGAAATACCAATTTTTTTA
GTTAACTGCCGTATAGGCAGCTTAGAAA	AACAGCTCTTACACCAGCGCAAAAATTTGCGA
GTTAACTGCCGTATAGGCAGCTTAGAAA	CAAAAGATTGAATTACATCATCGGCTACAGAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCAATTTTGGGTATTCGTTTTGATTCTGAATA
GTTAACTGCCGTATAGGCAGCTTAGAAA	AAAAGCATTCTGTTTACGCGTAAAAGGATCAA
GTTAACTGCCGTGTAGGCAGCTTAGAAA	AGCTTTAAGCTCTGCAAATGCCGAACTCATAC
GTTAACTGCCGTGTAGGCAGCTTAGAAA	GATTATTTTAAGCAACGGAGCGGAATTACACT
GTTAACTGCCGTGTAGGTAGCTTAGAAA	GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT
GTTAACTGCCGTGTAGGCAGCTTAGAAA	TAAAGCGATCTTGGCTCGATTATCAGATTGGT
GTTAACTGCCGTATAGGCAGTTTCAATT

>NZ_CP014618|2|2|2277196-2278063|PILER-CR
GTTAACTGCCGTATAGGCAGCTTAGAAA	GTTGGCCGCTACAAAATTGTCACTTTCAATAC
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCTGTATAAGCGGTTAAAAAAGTTATATTTTT
GTTAACTGCCGTATAGGCAGCTTAGAAA	ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTTTGAATGCTCATCACGCATTTGTTGCAACC
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC
GTTAACTGCCGTATAGGCAGCTTAGAAA	TTGATCGTTTGCGCGAAATACCAATTTTTTTA
GTTAACTGCCGTATAGGCAGCTTAGAAA	AACAGCTCTTACACCAGCGCAAAAATTTGCGA
GTTAACTGCCGTATAGGCAGCTTAGAAA	CAAAAGATTGAATTACATCATCGGCTACAGAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT
GTTAACTGCCGTATAGGCAGCTTAGAAA	GCAATTTTGGGTATTCGTTTTGATTCTGAATA
GTTAACTGCCGTATAGGCAGCTTAGAAA	AAAAGCATTCTGTTTACGCGTAAAAGGATCAA
GTTAACTGCCGTGTAGGCAGCTTAGAAA	AGCTTTAAGCTCTGCAAATGCCGAACTCATAC
GTTAACTGCCGTGTAGGCAGCTTAGAAA	GATTATTTTAAGCAACGGAGCGGAATTACACT
GTTAACTGCCGTGTAGGTAGCTTAGAAA	GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT
GTTAACTGCCGTGTAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014618.1\|WP_005724867.1\|2273902_2274607_+\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|225742
NZ_CP014618.1\|WP_014326411.1\|2280774_2282199_-\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_CP014618.1\|WP_016504356.1\|2283472_2284915_-\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP014618.1\|WP_005758057.1\|2275479_2276808_+\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NZ_CP014618.1\|WP_005724855.1\|2269983_2270643_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP014618.1\|WP_016504355.1\|2284952_2285879_-\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514
NZ_CP014618.1\|WP_005724904.1\|2286703_2288071_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP014618.1\|WP_014326415.1\|2274654_2275368_-\|tRNA-(adenosine(37)-N6)-methyltransferase-TrmM	unknown	unknown	gnl\|CDD\|226608
NZ_CP014618.1\|WP_016504414.1\|2267525_2268893_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP014618.1\|WP_005719208.1\|2268916_2269345_-\|DUF2489-domain-containing-protein	unknown	unknown	gnl\|CDD\|378470
NZ_CP014618.1\|WP_005758065.1\|2288429_2290016_+\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP014618.1\|WP_014326416.1\|2270723_2273627_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP014618.1\|WP_014326417.1\|2269350_2269920_-\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|367878
NZ_CP014618.1\|WP_014326414.1\|2278174_2279140_-\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NZ_CP014618.1\|WP_014326412.1\|2280251_2280659_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|225403
NZ_CP014618.1\|WP_014326419.1\|2266816_2267485_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NZ_CP014618.1\|WP_014326413.1\|2279136_2280183_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|182835
NZ_CP014618.1\|WP_005752888.1\|2266385_2266721_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP014618.1\|WP_014326410.1\|2282427_2283447_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|131470
NZ_CP014618.1\|WP_014326407.1\|2286064_2286676_+\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467

Protein	Function_ID	Function_description	E-value
NZ_CP014618.1\|WP_005724867.1\|2273902_2274607_+\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	5.27246e-73
NZ_CP014618.1\|WP_014326411.1\|2280774_2282199_-\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP014618.1\|WP_016504356.1\|2283472_2284915_-\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.82868e-175
NZ_CP014618.1\|WP_005758057.1\|2275479_2276808_+\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP014618.1\|WP_005724855.1\|2269983_2270643_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.19774e-102
NZ_CP014618.1\|WP_016504355.1\|2284952_2285879_-\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
NZ_CP014618.1\|WP_005724904.1\|2286703_2288071_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP014618.1\|WP_014326415.1\|2274654_2275368_-\|tRNA-(adenosine(37)-N6)-methyltransferase-TrmM	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.77606e-93
NZ_CP014618.1\|WP_016504414.1\|2267525_2268893_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP014618.1\|WP_005719208.1\|2268916_2269345_-\|DUF2489-domain-containing-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.12596e-47
NZ_CP014618.1\|WP_005758065.1\|2288429_2290016_+\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	6.14413e-167
NZ_CP014618.1\|WP_014326416.1\|2270723_2273627_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP014618.1\|WP_014326417.1\|2269350_2269920_-\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	8.55528e-59
NZ_CP014618.1\|WP_014326414.1\|2278174_2279140_-\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NZ_CP014618.1\|WP_014326412.1\|2280251_2280659_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	1.12449e-42
NZ_CP014618.1\|WP_014326419.1\|2266816_2267485_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	3.45531e-76
NZ_CP014618.1\|WP_014326413.1\|2279136_2280183_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
NZ_CP014618.1\|WP_005752888.1\|2266385_2266721_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.65249e-05
NZ_CP014618.1\|WP_014326410.1\|2282427_2283447_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
NZ_CP014618.1\|WP_014326407.1\|2286064_2286676_+\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	9.09394e-109

>NZ_CP014618.1|WP_005758057.1|2275479_2276808_+|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTPPANAE
>NZ_CP014618.1|WP_014326415.1|2274654_2275368_-|tRNA-(adenosine(37)-N6)-methyltransferase-TrmM
MSAKQNGFTFKQFHIEHHRCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>NZ_CP014618.1|WP_005724867.1|2273902_2274607_+|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKAHRQSVQ
>NZ_CP014618.1|WP_014326416.1|2270723_2273627_-|RNA-polymerase-associated-protein-RapA
MTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVADAVQSLLADKPLSTVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKSFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLARWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQHELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDSTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNTQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLQQATWRLDSLRVIVSNKE
>NZ_CP014618.1|WP_005724855.1|2269983_2270643_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>NZ_CP014618.1|WP_014326417.1|2269350_2269920_-|Der-GTPase-activating-protein-YihI
MARKKKTRRVSDIMPARKVDKKVELPKGKPGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNKHQALEKKDPRIGSRKKVPLVVEFVNKPEKGMTIPPMKLEEKLPKQDPMLELELLESNECLNQLLDDLEAGKTLSAEDQQFVDDCLDRIAELMDELGISEDDDPEEDLLRTFEKIDINQFR
>NZ_CP014618.1|WP_005719208.1|2268916_2269345_-|DUF2489-domain-containing-protein
MWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMEMPTHEKRRELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>NZ_CP014618.1|WP_016504414.1|2267525_2268893_-|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRASLFKNRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLKRARELGFQSTNLDLIYGLPLQNVDSFMFTLQKVIALNPDRLSVFNYAHLPSRFAGQAKIKNEQLPAPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQKQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSEEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSEDGLLTIGEKDIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>NZ_CP014618.1|WP_014326419.1|2266816_2267485_-|NAD(P)H-dependent-oxidoreductase
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPDIKALIRDTAWGAKDKVMDCSHFVVVLVRQPETLLADGEYVQHMMRDIHHIPEEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDDVVEWVR
>NZ_CP014618.1|WP_005752888.1|2266385_2266721_+|helix-turn-helix-transcriptional-regulator
MQITRRNASTKGASVAEIDRKKVRNEIIQAMLMGELSQGEALRKLRIEMFGINQQHYIQLVKVSRQTLSNIENDKGNYSVETINKVFKPFGLELGLVPVSKALLKELFSTA
>NZ_CP014618.1|WP_014326414.1|2278174_2279140_-|lipopolysaccharide-heptosyltransferase-RfaC
MKICLIKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDKQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>NZ_CP014618.1|WP_014326413.1|2279136_2280183_-|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPITQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYAIRLFGSAKDEAVGEEIRQALPETMRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEDGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>NZ_CP014618.1|WP_014326412.1|2280251_2280659_-|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNAGDSFPLRLLFDNGEIMHIEAKIIQY
>NZ_CP014618.1|WP_014326411.1|2280774_2282199_-|PTS-sucrose-transporter-subunit-IIBC
MNFSQIAQQVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAELSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAIADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLTKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIGVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>NZ_CP014618.1|WP_014326410.1|2282427_2283447_-|LacI-family-DNA-binding-transcriptional-regulator
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIITCSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>NZ_CP014618.1|WP_016504356.1|2283472_2284915_-|glycoside-hydrolase-family-32-protein
MYIFNQGKYKSLHAQEVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFITYDFHHFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPAHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>NZ_CP014618.1|WP_016504355.1|2284952_2285879_-|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQLTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATAKLTQHYPDKLIIVTLGKLGATYYLQGKSQLISSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>NZ_CP014618.1|WP_014326407.1|2286064_2286676_+|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHDDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>NZ_CP014618.1|WP_005724904.1|2286703_2288071_+|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>NZ_CP014618.1|WP_005758065.1|2288429_2290016_+|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGTKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014618_2	2.7\|2277344\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277344-2277375	32	NZ_CP014618.1	184941-184972	2	0.938
NZ_CP014618_2	2.7\|2277344\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277344-2277375	32	NZ_CP014618.1	1207292-1207323	2	0.938

1. spacer 2.7|2277344|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to position: 184941-184972, mismatch: 2, identity: 0.938

attatttctttcaggtgttggggggattgaat	CRISPR spacer
attatttctctcgggtgttggggggattgaat	Protospacer
*********.**.*******************

2. spacer 2.7|2277344|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to position: 1207292-1207323, mismatch: 2, identity: 0.938

attatttctttcaggtgttggggggattgaat	CRISPR spacer
attatttctctcgggtgttggggggattgaat	Protospacer
*********.**.*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014618_2	2.1\|2276984\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2276984-2277015	32	MH238466	Pasteurella phage AFS-2018a, complete genome	27063-27094	0	1.0
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	NC_003315	Haemophilus phage HP2, complete genome	7449-7480	0	1.0
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	AY027935	Haemophilus influenzae phage HP2, complete genome	7449-7480	0	1.0
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	U24159	Bacteriophage HP1 strain HP1c1, complete genome	7789-7820	0	1.0
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	NC_001697	Haemophilus phage HP1, complete genome	7789-7820	0	1.0
NZ_CP014618_2	2.10\|2277524\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277524-2277555	32	NC_008193	Pasteurella phage F108, complete genome	7600-7631	0	1.0
NZ_CP014618_2	2.10\|2277524\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277524-2277555	32	DQ114220	Bacteriophage F108, complete genome	7600-7631	0	1.0
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	NC_008193	Pasteurella phage F108, complete genome	7373-7404	1	0.969
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	DQ114220	Bacteriophage F108, complete genome	7373-7404	1	0.969
NZ_CP014618_2	2.6\|2277284\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277284-2277315	32	MH238467	Pasteurella phage Pm86, complete genome	53406-53437	1	0.969
NZ_CP014618_2	2.16\|2277884\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277884-2277915	32	MH238466	Pasteurella phage AFS-2018a, complete genome	23770-23801	1	0.969
NZ_CP014618_2	2.19\|2278064\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2278064-2278095	32	MH238467	Pasteurella phage Pm86, complete genome	42601-42632	1	0.969
NZ_CP014618_2	2.7\|2277344\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277344-2277375	32	MT902335	Pasteurella phage vB_PmuP_Pa7, complete genome	31794-31825	2	0.938
NZ_CP014618_2	2.7\|2277344\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277344-2277375	32	NC_047831	Pasteurella phage PHB02, complete genome	5648-5679	2	0.938
NZ_CP014618_2	2.17\|2277944\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277944-2277975	32	NC_008193	Pasteurella phage F108, complete genome	11445-11476	2	0.938
NZ_CP014618_2	2.17\|2277944\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277944-2277975	32	DQ114220	Bacteriophage F108, complete genome	11445-11476	2	0.938
NZ_CP014618_1	1.4\|217267\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217267-217298	32	NZ_CP017756	Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence	73488-73519	5	0.844
NZ_CP014618_2	2.6\|2277284\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277284-2277315	32	JX157235	Uncultured phage contig22 genomic sequence	395-426	5	0.844
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_KX086582	Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence	25794-25825	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_KF831355	Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence	23170-23201	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_AP018563	Staphylococcus argenteus strain 58113 plasmid p1, complete sequence	18411-18442	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NC_013327	Staphylococcus aureus plasmid pWBG749, complete sequence	26168-26199	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	CP030569	Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence	12940-12971	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	CP030458	Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence	15652-15683	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_AP017923	Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence	17835-17866	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NC_013325	Staphylococcus aureus plasmid pWBG745, complete sequence	13088-13119	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	CP030696	Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence	28191-28222	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	CP030710	Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence	7547-7578	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_CP012757	Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence	37721-37752	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_CP042004	Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence	11471-11502	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_CP047857	Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence	26882-26913	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	9160-9191	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_MH587575	Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence	17922-17953	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	17842-17873	6	0.812
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	CP030603	Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence	34556-34587	6	0.812
NZ_CP014618_1	1.5\|217327\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217327-217358	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	465830-465861	7	0.781
NZ_CP014618_1	1.5\|217327\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217327-217358	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	650120-650151	7	0.781
NZ_CP014618_1	1.5\|217327\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217327-217358	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1110688-1110719	7	0.781
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	KC462197	Burkholderia phage ST79, complete genome	5655-5686	7	0.781
NZ_CP014618_2	2.6\|2277284\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277284-2277315	32	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	2771-2802	7	0.781
NZ_CP014618_2	2.6\|2277284\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277284-2277315	32	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	20238-20269	7	0.781
NZ_CP014618_2	2.6\|2277284\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277284-2277315	32	NZ_LR134420	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 11	28159-28190	7	0.781
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	MN694758	Marine virus AFVG_250M853, complete genome	27038-27069	8	0.75
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	MN694774	Marine virus AFVG_250M941, complete genome	26488-26519	8	0.75
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	MN694077	Marine virus AFVG_250M852, complete genome	27041-27072	8	0.75
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	MN693487	Marine virus AFVG_25M100, complete genome	6473-6504	8	0.75
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	MN694586	Marine virus AFVG_250M370, complete genome	8206-8237	8	0.75
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	NC_006882	Prochlorococcus phage P-SSP7, complete genome	10258-10289	8	0.75
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	GU071093	Prochlorococcus phage P-SSP7, partial genome	9484-9515	8	0.75
NZ_CP014618_2	2.4\|2277164\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277164-2277195	32	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	81775-81806	8	0.75
NZ_CP014618_2	2.4\|2277164\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277164-2277195	32	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	82182-82213	8	0.75
NZ_CP014618_2	2.4\|2277164\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277164-2277195	32	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	85050-85081	8	0.75
NZ_CP014618_2	2.5\|2277224\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277224-2277255	32	NZ_CP040048	Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence	504367-504398	8	0.75
NZ_CP014618_2	2.5\|2277224\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277224-2277255	32	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	131657-131688	8	0.75
NZ_CP014618_2	2.5\|2277224\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277224-2277255	32	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	25904-25935	8	0.75
NZ_CP014618_2	2.12\|2277644\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277644-2277675	32	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	49711-49742	8	0.75
NZ_CP014618_2	2.12\|2277644\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277644-2277675	32	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	49699-49730	8	0.75
NZ_CP014618_2	2.12\|2277644\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277644-2277675	32	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	49699-49730	8	0.75
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	MK905543	Vibrio phage USC-1, complete genome	55483-55514	8	0.75
NZ_CP014618_2	2.18\|2278004\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2278004-2278035	32	MK358448	Vibrio phage 5, complete genome	209261-209292	8	0.75
NZ_CP014618_1	1.1\|217086\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217086-217117	32	AM087120	Acidianus filamentous virus 3, partial viral genome	1603-1634	9	0.719
NZ_CP014618_1	1.1\|217086\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217086-217117	32	MN693550	Marine virus AFVG_25M93, complete genome	8160-8191	9	0.719
NZ_CP014618_1	1.2\|217146\|33\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217146-217178	33	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	11367-11399	9	0.727
NZ_CP014618_1	1.9\|217567\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217567-217598	32	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	1949-1980	9	0.719
NZ_CP014618_2	2.1\|2276984\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2276984-2277015	32	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	62817-62848	9	0.719
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	MH986725	Pseudoalteromonas phage DW, complete genome	24109-24140	9	0.719
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	NC_009236	Burkholderia phage phiE12-2 chromosome, complete genome	11050-11081	9	0.719
NZ_CP014618_2	2.3\|2277104\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	2277104-2277135	32	CP000624	Burkholderia phage phiE12-2, complete genome	11050-11081	9	0.719
NZ_CP014618_2	2.5\|2277224\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277224-2277255	32	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	697616-697647	9	0.719
NZ_CP014618_2	2.12\|2277644\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277644-2277675	32	NC_018694	Bacillus thuringiensis MC28 plasmid pMC54, complete sequence	2727-2758	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	MN689509	Lactococcus phage CHPC1175, complete genome	2767-2798	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	MN689521	Lactococcus phage CHPC836, complete genome	2787-2818	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	MN689516	Lactococcus phage CHPC148, complete genome	2895-2926	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	NC_004746	Lactococcus phage 4268, complete genome	16547-16578	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	MN534316	Lactococcus phage proPhi2, complete genome	17507-17538	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	AF323669	Bacteriophage bIL286, complete genome	20242-20273	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	MN689530	Lactococcus phage CHPC974, partial genome	2882-2913	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	AJ245616	Lactococcus lactis phage BK5-T complete genome	2890-2921	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	AF176025	Lactococcus phage BK5-T, complete genome	2890-2921	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	AF489521	Lactococcus bacteriophage 4268, complete genome	16547-16578	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	MN534317	Lactococcus phage proPhi4, complete genome	17507-17538	9	0.719
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	NC_002667	Lactococcus prophage bIL286, complete genome	20242-20273	9	0.719
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	5680-5711	10	0.688
NZ_CP014618_1	1.3\|217207\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217207-217238	32	GU943040	Uncultured phage MedDCM-OCT-S09-C28 genomic sequence	16896-16927	10	0.688
NZ_CP014618_1	1.4\|217267\|32\|NZ_CP014618\|PILER-CR,CRISPRCasFinder,CRT	217267-217298	32	NZ_CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	284092-284123	10	0.688
NZ_CP014618_1	1.10\|217627\|32\|NZ_CP014618\|CRISPRCasFinder,CRT	217627-217658	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	505837-505868	10	0.688
NZ_CP014618_2	2.13\|2277704\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277704-2277735	32	NZ_CP044537	Borrelia sp. CA690 plasmid lp28-4, complete sequence	34383-34414	10	0.688
NZ_CP014618_2	2.10\|2277524\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277524-2277555	32	MK496701	Capybara microvirus Cap1_SP_93, complete genome	2200-2231	11	0.656

1. spacer 2.1|2276984|32|NZ_CP014618|CRISPRCasFinder,CRT matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 0, identity: 1.0

atttttcttttgctgtaaagacaagctgatca	CRISPR spacer
atttttcttttgctgtaaagacaagctgatca	Protospacer
********************************

2. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 0, identity: 1.0

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggacttgtgtcagtaactgtaaccgctcaa	Protospacer
********************************

3. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 0, identity: 1.0

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggacttgtgtcagtaactgtaaccgctcaa	Protospacer
********************************

4. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 0, identity: 1.0

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggacttgtgtcagtaactgtaaccgctcaa	Protospacer
********************************

5. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 0, identity: 1.0

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggacttgtgtcagtaactgtaaccgctcaa	Protospacer
********************************

6. spacer 2.10|2277524|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 0, identity: 1.0

ttgatcgtttgcgcgaaataccaattttttta	CRISPR spacer
ttgatcgtttgcgcgaaataccaattttttta	Protospacer
********************************

7. spacer 2.10|2277524|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 0, identity: 1.0

ttgatcgtttgcgcgaaataccaattttttta	CRISPR spacer
ttgatcgtttgcgcgaaataccaattttttta	Protospacer
********************************

8. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 1, identity: 0.969

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ctggacttgtgtcagtaactgtaaccgctcaa	Protospacer
.*******************************

9. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 1, identity: 0.969

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ctggacttgtgtcagtaactgtaaccgctcaa	Protospacer
.*******************************

10. spacer 2.6|2277284|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

gctgtataagcggttaaaaaagttatattttt	CRISPR spacer
gctgaataagcggttaaaaaagttatattttt	Protospacer
**** ***************************

11. spacer 2.16|2277884|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 1, identity: 0.969

agctttaagctctgcaaatgccgaactcatac	CRISPR spacer
agctttaagctctgcaaatgccgaactcatgc	Protospacer
******************************.*

12. spacer 2.19|2278064|32|NZ_CP014618|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

taaagcgatcttggctcgattatcagattggt	CRISPR spacer
taaagcgattttggctcgattatcagattggt	Protospacer
*********.**********************

13. spacer 2.7|2277344|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MT902335 (Pasteurella phage vB_PmuP_Pa7, complete genome) position: , mismatch: 2, identity: 0.938

attatttctttcaggtgttggggggattgaat	CRISPR spacer
attatttctctcgggtgttggggggattgaat	Protospacer
*********.**.*******************

14. spacer 2.7|2277344|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_047831 (Pasteurella phage PHB02, complete genome) position: , mismatch: 2, identity: 0.938

attatttctttcaggtgttggggggattgaat	CRISPR spacer
attatttctctcgggtgttggggggattgaat	Protospacer
*********.**.*******************

15. spacer 2.17|2277944|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

gattattttaagcaacggagcggaattacact	CRISPR spacer
gattattttaagcaatggcgcggaattacact	Protospacer
***************.** *************

16. spacer 2.17|2277944|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

gattattttaagcaacggagcggaattacact	CRISPR spacer
gattattttaagcaatggcgcggaattacact	Protospacer
***************.** *************

17. spacer 1.4|217267|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

attcgatttccagtgccgaaaat-ccatgccct	CRISPR spacer
attcgatttctggtgccgaaaatggcttgccc-	Protospacer
**********..***********  * *****

18. spacer 2.6|2277284|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to JX157235 (Uncultured phage contig22 genomic sequence) position: , mismatch: 5, identity: 0.844

-gctgtataagcggttaaaaaagttatattttt	CRISPR spacer
cgttgtat-agccgttaaaatagttatattttg	Protospacer
 *.***** *** ******* ***********

19. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

20. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

21. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

22. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

23. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

24. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

25. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

26. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

27. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

28. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

29. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

30. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

31. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

32. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

33. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

34. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

35. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. **

36. spacer 1.5|217327|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

37. spacer 1.5|217327|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

38. spacer 1.5|217327|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

39. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to KC462197 (Burkholderia phage ST79, complete genome) position: , mismatch: 7, identity: 0.781

ttggacttgtgtcagtaactgtaaccgctcaa--	CRISPR spacer
ttggactcgtgtcaataactgta--cgcaggacg	Protospacer
*******.******.********  ***  .*

40. spacer 2.6|2277284|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

gctgtata-agcggttaaaaaagttatattttt	CRISPR spacer
-ttctacagagcggtcaaaaaatttatattttc	Protospacer
 .* **.* ******.****** *********.

41. spacer 2.6|2277284|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

gctgtata-agcggttaaaaaagttatattttt	CRISPR spacer
-ttctacagagcggtcaaaaaatttatattttc	Protospacer
 .* **.* ******.****** *********.

42. spacer 2.6|2277284|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134420 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 11) position: , mismatch: 7, identity: 0.781

gctgtataagcggttaaaaaagttatattttt-	CRISPR spacer
gctataaaagcggttaaaaaag-tagatgatgg	Protospacer
***.** *************** ** **  *

43. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

44. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

45. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

46. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

47. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

48. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NC_006882 (Prochlorococcus phage P-SSP7, complete genome) position: , mismatch: 8, identity: 0.75

ttggacttgtgtcagtaactgtaaccgctcaa---	CRISPR spacer
ttggacttatgtcagtagctgtaggca---aagcc	Protospacer
********.********.*****. *.   **

49. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to GU071093 (Prochlorococcus phage P-SSP7, partial genome) position: , mismatch: 8, identity: 0.75

ttggacttgtgtcagtaactgtaaccgctcaa---	CRISPR spacer
ttggacttatgtcagtagctgtaggca---aagcc	Protospacer
********.********.*****. *.   **

50. spacer 2.4|2277164|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 8, identity: 0.75

gttgcaattcaacgtggtgagcaagaaatcaa	CRISPR spacer
attgcaattcagcgcggtgagcaaccggtcta	Protospacer
.**********.**.*********  ..** *

51. spacer 2.4|2277164|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 8, identity: 0.75

gttgcaattcaacgtggtgagcaagaaatcaa	CRISPR spacer
attgcaattcagcgcggtgagcaaccggtcta	Protospacer
.**********.**.*********  ..** *

52. spacer 2.4|2277164|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 8, identity: 0.75

gttgcaattcaacgtggtgagcaagaaatcaa	CRISPR spacer
attgcaattcagcgcggtgagcaaccggtcta	Protospacer
.**********.**.*********  ..** *

53. spacer 2.5|2277224|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040048 (Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gttggccgctacaaaattgtcactttcaatac	CRISPR spacer
atctaacggtacaaaattttcactttcaataa	Protospacer
.*. . ** ********* ************

54. spacer 2.5|2277224|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gttggccgc-----tacaaaattgtcactttcaatac	CRISPR spacer
-----cagcaagattacaaaattgtcacattcaaaac	Protospacer
     * **     ************** ***** **

55. spacer 2.5|2277224|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gttggccgc-----tacaaaattgtcactttcaatac	CRISPR spacer
-----cagcaagattacaaaattgtcacattcaaaac	Protospacer
     * **     ************** ***** **

56. spacer 2.12|2277644|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.75

caaaagattgaattacatcatcggctacagat	CRISPR spacer
taaaagattcaattccatcatcggatgaatac	Protospacer
.******** **** ********* *. * *.

57. spacer 2.12|2277644|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.75

caaaagattgaattacatcatcggctacagat	CRISPR spacer
taaaagattcaattccatcatcggatgaatac	Protospacer
.******** **** ********* *. * *.

58. spacer 2.12|2277644|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.75

caaaagattgaattacatcatcggctacagat	CRISPR spacer
taaaagattcaattccatcatcggatgaatac	Protospacer
.******** **** ********* *. * *.

59. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

gtcatcttccaattcttctgttttctgctctt	CRISPR spacer
atcgtcttccaattcttctgtttcctcagact	Protospacer
.**.*******************.**    .*

60. spacer 2.18|2278004|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

gtcatcttccaattcttctgttttctgctctt	CRISPR spacer
atcgtcttccaattcttctgtttcctcagact	Protospacer
.**.*******************.**    .*

61. spacer 1.1|217086|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to AM087120 (Acidianus filamentous virus 3, partial viral genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
aaggaaagaaaatgacgaatataagaaaagaa	Protospacer
*   . .. *** *******************

62. spacer 1.1|217086|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
gcttttatcaaaagaagaatataaaaaaagat	Protospacer
..*. *. ******* ********.******

63. spacer 1.2|217146|33|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

gtcgttgaaacggcaccatgggcgtttgcattt	CRISPR spacer
ctgatggaaacgtcaccattggcgtttgcagcg	Protospacer
 * .* ****** ****** ********** .

64. spacer 1.9|217567|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 9, identity: 0.719

aagcccaccttgcgcttgaacagatgaattaa	CRISPR spacer
ttgctttccttgcgctttaacagatgtatttt	Protospacer
  **.. ********** ******** ***

65. spacer 2.1|2276984|32|NZ_CP014618|CRISPRCasFinder,CRT matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 9, identity: 0.719

atttttcttttgctgtaaagacaagctgatca	CRISPR spacer
tatattcttttgctgtaaattcaagctcacgt	Protospacer
  * ***************  ****** *.

66. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to MH986725 (Pseudoalteromonas phage DW, complete genome) position: , mismatch: 9, identity: 0.719

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggactcgtgtcaataactgtacggttccag	Protospacer
*******.******.********    ..**.

67. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to NC_009236 (Burkholderia phage phiE12-2 chromosome, complete genome) position: , mismatch: 9, identity: 0.719

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggactcgtgtcaataactgtacgcgggacg	Protospacer
*******.******.********  **    .

68. spacer 2.3|2277104|32|NZ_CP014618|CRISPRCasFinder,CRT matches to CP000624 (Burkholderia phage phiE12-2, complete genome) position: , mismatch: 9, identity: 0.719

ttggacttgtgtcagtaactgtaaccgctcaa	CRISPR spacer
ttggactcgtgtcaataactgtacgcgggacg	Protospacer
*******.******.********  **    .

69. spacer 2.5|2277224|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.719

gttggc--cgctacaaaattgtcactttcaatac	CRISPR spacer
--cagcaatattacaaaattgtcacattcaaaac	Protospacer
  ..**  ...************** ***** **

70. spacer 2.12|2277644|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_018694 (Bacillus thuringiensis MC28 plasmid pMC54, complete sequence) position: , mismatch: 9, identity: 0.719

caaaagattgaattacatcatcggctacagat	CRISPR spacer
ctgcaagaagaattacatcatctgctaaagat	Protospacer
* . *..  ************* **** ****

71. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaagatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

72. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MN689521 (Lactococcus phage CHPC836, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaagatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

73. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaagatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

74. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaagatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

75. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MN534316 (Lactococcus phage proPhi2, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaaaatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

76. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaaaatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

77. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MN689530 (Lactococcus phage CHPC974, partial genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaagatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

78. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to AJ245616 (Lactococcus lactis phage BK5-T complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaaaatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

79. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to AF176025 (Lactococcus phage BK5-T, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaaaatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

80. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaagatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

81. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MN534317 (Lactococcus phage proPhi4, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaaaatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

82. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
tagttaaaatcaatgctgaaaagaaaaagaat	Protospacer
 *. ... ****** ************.****

83. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.****

84. spacer 1.3|217207|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * ..

85. spacer 1.4|217267|32|NZ_CP014618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attcgatttccagtgccgaaaatccatgccct	CRISPR spacer
gctgctgttccagccccgaaaatccatgccga	Protospacer
..*    ******. ***************

86. spacer 1.10|217627|32|NZ_CP014618|CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

tttaagctacgtttatccgcaagattcactac	CRISPR spacer
acaaagccacggttatccgcaagattgtagag	Protospacer
 . ****.*** **************    *

87. spacer 2.13|2277704|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044537 (Borrelia sp. CA690 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.688

gaagcggtatcaattctgaaaagaaaaggaat	CRISPR spacer
atgaagaagtcaattctcaaaagaaaagcaat	Protospacer
. .. *. .******** ********** ***

88. spacer 2.10|2277524|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to MK496701 (Capybara microvirus Cap1_SP_93, complete genome) position: , mismatch: 11, identity: 0.656

ttgatcgtttgcgcgaaataccaattttttta	CRISPR spacer
gcaccttcttgcgcgtaataccaattattttg	Protospacer
 .. .. .******* ********** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

542 : 10643

Mannheimia_phage(12.5%)

transposase,integrase

attL 1207:1220|attR 12594:12607

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064775646.1\|542_1031_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	3.2e-34	51.2
WP_015691048.1\|1134_2043_+	hypothetical protein	A0A0M4S6X1	Salmonella_phage	2.5e-40	36.1
1207:1220	attL	NA	NA	NA	NA
WP_064775645.1\|2287_2509_+	hypothetical protein	NA	NA	NA	NA
WP_014391442.1\|2519_3242_+	DNA-binding protein	G0ZND1	Cronobacter_phage	3.3e-35	52.5
WP_075271365.1\|3425_3728_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014391441.1\|3631_4687_+\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	1.6e-62	37.9
WP_005725034.1\|5061_5916_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.8e-31	40.3
WP_014325726.1\|6492_6957_-\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.3e-13	36.1
WP_005719438.1\|7139_7640_-	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	4.0e-40	55.6
WP_014326374.1\|7811_10643_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.3
12594:12607	attR	NA	NA	NA	NA

DBSCAN-SWA_2

185777 : 192976

Burkholderia_phage(40.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064775698.1\|185777_186344_-\|tail	phage tail protein	Q6QI98	Burkholderia_phage	5.3e-41	46.4
WP_064775699.1\|186336_187449_-\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	3.6e-57	35.6
WP_064775741.1\|187438_187804_-\|plate	phage baseplate protein	NA	NA	NA	NA
WP_064775700.1\|187856_188438_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_064775701.1\|188452_189505_-	hypothetical protein	A4JWL3	Burkholderia_virus	2.1e-59	40.3
WP_064775702.1\|189504_189726_-	hypothetical protein	Q6QIA3	Burkholderia_phage	8.5e-11	43.3
WP_064775703.1\|189713_190664_-\|tail	phage tail protein	NA	NA	NA	NA
WP_064775704.1\|190672_192976_-\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	4.2e-68	38.1

DBSCAN-SWA_3

203016 : 214776

Vibrio_phage(38.46%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064775743.1\|203016_204489_-	hypothetical protein	M1NVQ0	Vibrio_phage	6.0e-161	62.1
WP_064775717.1\|204575_205157_-	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	2.4e-36	44.5
WP_064775718.1\|205179_205482_-	hypothetical protein	A0A0C4UR00	Shigella_phage	2.2e-25	60.4
WP_064775719.1\|205478_205808_-	DUF2730 family protein	NA	NA	NA	NA
WP_064775721.1\|205925_206186_-	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_064775722.1\|206182_206410_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	6.0e-20	72.4
WP_064775723.1\|206420_206957_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.1e-72	69.1
WP_064775724.1\|207034_207397_-	hypothetical protein	NA	NA	NA	NA
WP_064775725.1\|207471_207846_-	transcriptional regulator	Q6QIE8	Burkholderia_phage	3.3e-23	46.2
WP_064775726.1\|207845_208391_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	1.8e-38	44.1
WP_064775727.1\|208387_208894_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	5.0e-14	32.7
WP_064775728.1\|208967_209669_-	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	3.9e-17	30.6
WP_061406041.1\|209677_209893_-	hypothetical protein	NA	NA	NA	NA
WP_061406042.1\|209910_210102_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_061406043.1\|210179_210698_-	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.3e-54	64.3
WP_046339044.1\|210690_210930_-	hypothetical protein	NA	NA	NA	NA
WP_064775729.1\|211139_211385_-	hypothetical protein	NA	NA	NA	NA
WP_064775730.1\|211405_211609_-	hypothetical protein	NA	NA	NA	NA
WP_016533375.1\|211608_212526_-	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	2.3e-62	43.4
WP_064775731.1\|212552_214556_-\|transposase	transposase	M4M9R2	Vibrio_phage	1.0e-94	35.2
WP_064775732.1\|214539_214776_-	transcriptional regulator	M1PVU4	Vibrio_phage	3.7e-12	57.1

DBSCAN-SWA_4

988253 : 997611

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326205.1\|988253_989528_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.8e-92	49.5
WP_005753554.1\|989568_990186_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_014326206.1\|990185_991073_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_064775639.1\|991142_992090_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.9e-43	38.7
WP_005753553.1\|992165_993719_-	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
WP_010906540.1\|993953_994745_+	zinc ABC transporter ATP-binding protein ZnuC	A0A2K9L3Z8	Tupanvirus	3.7e-16	32.8
WP_005724066.1\|994753_995539_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_005724065.1\|995615_996596_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
WP_014326208.1\|996612_997611_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4

DBSCAN-SWA_5

1167894 : 1264423

Vibrio_phage(19.44%)

tRNA,head,tail,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016504277.1\|1167894_1168395_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_005751070.1\|1168611_1169352_-	pyruvate formate lyase 1-activating protein	E5DI79	Enterobacter_phage	8.6e-07	37.1
WP_014326306.1\|1169515_1171555_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_005722327.1\|1171728_1174053_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.7e-157	41.5
WP_005755854.1\|1174138_1174990_-	formate transporter FocA	NA	NA	NA	NA
WP_005727186.1\|1175377_1175728_+	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_005751066.1\|1175727_1176078_+	YcfL family protein	NA	NA	NA	NA
WP_081273992.1\|1176771_1177245_-	ci repressor-like protein	NA	NA	NA	NA
WP_064775732.1\|1177484_1177721_+	transcriptional regulator	M1PVU4	Vibrio_phage	3.7e-12	57.1
WP_064775731.1\|1177704_1179708_+\|transposase	transposase	M4M9R2	Vibrio_phage	1.0e-94	35.2
WP_016533375.1\|1179734_1180652_+	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	2.3e-62	43.4
WP_064775730.1\|1180651_1180855_+	hypothetical protein	NA	NA	NA	NA
WP_064775729.1\|1180875_1181121_+	hypothetical protein	NA	NA	NA	NA
WP_046339044.1\|1181330_1181570_+	hypothetical protein	NA	NA	NA	NA
WP_061406043.1\|1181562_1182081_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.3e-54	64.3
WP_061406042.1\|1182158_1182350_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_061406041.1\|1182367_1182583_+	hypothetical protein	NA	NA	NA	NA
WP_064775728.1\|1182591_1183293_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	3.9e-17	30.6
WP_064775727.1\|1183366_1183873_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	5.0e-14	32.7
WP_064775726.1\|1183869_1184415_+	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	1.8e-38	44.1
WP_064775725.1\|1184414_1184789_+	transcriptional regulator	Q6QIE8	Burkholderia_phage	3.3e-23	46.2
WP_064775724.1\|1184863_1185226_+	hypothetical protein	NA	NA	NA	NA
WP_064775723.1\|1185303_1185840_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.1e-72	69.1
WP_064775722.1\|1185850_1186078_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	6.0e-20	72.4
WP_064775721.1\|1186074_1186335_+	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_064775719.1\|1186452_1186782_+	DUF2730 family protein	NA	NA	NA	NA
WP_064775718.1\|1186778_1187081_+	hypothetical protein	A0A0C4UR00	Shigella_phage	2.2e-25	60.4
WP_064775717.1\|1187103_1187685_+	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	2.4e-36	44.5
WP_064775743.1\|1187771_1189244_+	hypothetical protein	M1NVQ0	Vibrio_phage	6.0e-161	62.1
WP_151202333.1\|1189239_1190682_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	2.6e-116	53.5
WP_064775742.1\|1190683_1191949_+\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	3.1e-65	44.4
WP_064775715.1\|1192085_1192274_+	hypothetical protein	NA	NA	NA	NA
WP_064775714.1\|1192475_1192931_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_064775713.1\|1193167_1194271_+	hypothetical protein	A4JWJ9	Burkholderia_virus	3.3e-71	41.8
WP_064775712.1\|1194280_1195207_+	hypothetical protein	A4JWK0	Burkholderia_virus	1.7e-76	49.3
WP_064775711.1\|1195259_1195718_+	hypothetical protein	NA	NA	NA	NA
WP_064775710.1\|1195717_1196167_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_064775709.1\|1196166_1196634_+	hypothetical protein	NA	NA	NA	NA
WP_101766767.1\|1196640_1198035_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	5.1e-109	47.3
WP_064775707.1\|1198034_1198550_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_064775706.1\|1198632_1198911_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_075284997.1\|1198937_1199060_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_064775705.1\|1199056_1199248_-	hypothetical protein	NA	NA	NA	NA
WP_064775704.1\|1199287_1201591_+\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	4.2e-68	38.1
WP_064775703.1\|1201599_1202550_+\|tail	phage tail protein	NA	NA	NA	NA
WP_064775702.1\|1202537_1202759_+	hypothetical protein	Q6QIA3	Burkholderia_phage	8.5e-11	43.3
WP_064775701.1\|1202758_1203811_+	hypothetical protein	A4JWL3	Burkholderia_virus	2.1e-59	40.3
WP_064775700.1\|1203825_1204407_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_064775741.1\|1204459_1204825_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_064775699.1\|1204814_1205927_+\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	3.6e-57	35.6
WP_064775698.1\|1205919_1206486_+\|tail	phage tail protein	Q6QI98	Burkholderia_phage	5.3e-41	46.4
WP_016570130.1\|1209017_1209197_+	hypothetical protein	NA	NA	NA	NA
WP_016504384.1\|1209902_1210886_-	type I-F CRISPR-associated protein Csy2	NA	NA	NA	NA
WP_016504385.1\|1210895_1212230_-	type I-F CRISPR-associated protein Csy1	NA	NA	NA	NA
WP_014325843.1\|1212460_1214620_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_014325842.1\|1214753_1216802_-\|tRNA	methionine--tRNA ligase	H2EDI7	Moumouvirus	2.5e-48	30.1
WP_014325841.1\|1216983_1218096_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_005721273.1\|1218234_1218504_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_014325840.1\|1218670_1221574_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_005751227.1\|1221615_1222131_-	heme utilization protein HutZ	NA	NA	NA	NA
WP_014325839.1\|1222146_1222638_-	heme utilization cystosolic carrier protein HutX	NA	NA	NA	NA
WP_005751354.1\|1223702_1223966_+	hypothetical protein	NA	NA	NA	NA
WP_014325820.1\|1229815_1230625_-	glutamate racemase	NA	NA	NA	NA
WP_005757018.1\|1230621_1231134_-	chorismate lyase	NA	NA	NA	NA
WP_005751676.1\|1231126_1233208_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_005722820.1\|1233204_1235328_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.6e-11	38.9
WP_005717016.1\|1235388_1235658_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_014325819.1\|1235724_1236351_-	guanylate kinase	A0A223FN12	Murmansk_poxvirus	3.8e-16	32.4
WP_014325818.1\|1236448_1236841_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_014325817.1\|1237088_1238093_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_005717037.1\|1238271_1238403_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_014325816.1\|1238655_1240476_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	2.5e-47	25.7
WP_014325815.1\|1240540_1241629_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_014325814.1\|1241775_1242537_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	2.0e-14	32.2
WP_016504673.1\|1242536_1243634_-	murein transglycosylase A	NA	NA	NA	NA
WP_014325812.1\|1244102_1245476_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_005717048.1\|1245621_1246623_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.9e-73	44.5
WP_005722854.1\|1246758_1247250_+	hypothetical protein	NA	NA	NA	NA
WP_014325811.1\|1247531_1248671_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_005754391.1\|1248664_1250053_+	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_016504367.1\|1250137_1250953_-	hypothetical protein	NA	NA	NA	NA
WP_005717062.1\|1251084_1251765_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_016504366.1\|1251778_1253041_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.9e-95	47.3
WP_064775618.1\|1253175_1254528_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_014325808.1\|1254707_1256006_+	adenylosuccinate synthase	W5S5V7	Pithovirus	1.1e-70	36.5
WP_005722865.1\|1256195_1257602_+	c-type cytochrome	NA	NA	NA	NA
WP_014325807.1\|1257904_1260046_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	2.2e-257	62.1
WP_010906934.1\|1260117_1260594_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	2.5e-52	61.7
WP_005722869.1\|1260618_1260861_-	hypothetical protein	NA	NA	NA	NA
WP_005751698.1\|1260899_1261691_-	TatD family hydrolase	NA	NA	NA	NA
WP_014325805.1\|1261797_1262349_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_005717092.1\|1262397_1262907_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_014325804.1\|1263043_1264423_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.5e-44	34.6

DBSCAN-SWA_6

1404393 : 1511055

112

Mannheimia_phage(42.37%)

tRNA,tail,transposase,integrase,terminase

attL 1463323:1463368|attR 1509449:1509494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014325726.1\|1404393_1404858_-\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.3e-13	36.1
WP_005717387.1\|1405039_1405768_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	4.9e-31	38.1
WP_014325725.1\|1405833_1406502_-	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA
WP_014325724.1\|1406511_1407054_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	4.8e-23	45.7
WP_014325723.1\|1407116_1408427_-	porin	NA	NA	NA	NA
WP_005723236.1\|1408671_1408962_+	DUF406 family protein	NA	NA	NA	NA
WP_064775613.1\|1409009_1410671_-	putative transporter	NA	NA	NA	NA
WP_005723242.1\|1412760_1413315_+	DUF5358 domain-containing protein	NA	NA	NA	NA
WP_010907004.1\|1413532_1415188_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	7.4e-83	34.9
WP_014325722.1\|1415277_1416357_-	endonuclease	NA	NA	NA	NA
WP_014325721.1\|1416837_1417392_+	hypothetical protein	NA	NA	NA	NA
WP_005717426.1\|1417699_1418488_+	hemin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014325720.1\|1418500_1419445_+	iron ABC transporter permease	NA	NA	NA	NA
WP_005723258.1\|1419456_1420194_+	ABC transporter ATP-binding protein	M1HP82	Acanthocystis_turfacea_Chlorella_virus	1.5e-14	32.5
WP_016504262.1\|1420339_1422769_-	TonB-dependent receptor	NA	NA	NA	NA
WP_064775610.1\|1424207_1425344_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_005720092.1\|1425390_1425807_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_014325717.1\|1427095_1428334_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	1.0e-12	25.6
WP_014325716.1\|1428347_1428920_+	hypothetical protein	NA	NA	NA	NA
WP_014325715.1\|1429335_1433229_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.7e-114	53.4
WP_005723276.1\|1433453_1433753_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_005723278.1\|1433733_1434738_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_005717441.1\|1435014_1435896_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_014325712.1\|1436038_1437472_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_005723282.1\|1437461_1437713_-	YhdT family protein	NA	NA	NA	NA
WP_005723284.1\|1437795_1439142_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_005717446.1\|1439243_1439705_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_005717447.1\|1439859_1440306_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_005717448.1\|1440376_1441390_-	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_005723289.1\|1441642_1442500_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_016504292.1\|1442610_1443864_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_095177582.1\|1444142_1445048_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_014325708.1\|1445078_1445342_+	hypothetical protein	NA	NA	NA	NA
WP_014325707.1\|1445359_1445983_+	glutathione S-transferase	NA	NA	NA	NA
WP_005751822.1\|1446113_1446494_+	hypothetical protein	NA	NA	NA	NA
WP_014325706.1\|1446523_1448593_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_014325705.1\|1448728_1450147_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_005723307.1\|1450475_1452047_+	AbgT family transporter	NA	NA	NA	NA
WP_005717460.1\|1452177_1452648_+	membrane protein FxsA	NA	NA	NA	NA
WP_005717461.1\|1452736_1453027_+	co-chaperone GroES	A0A221S322	uncultured_virus	4.5e-12	40.0
WP_014325704.1\|1453122_1454757_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.7e-188	68.6
WP_016504294.1\|1455609_1456407_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_014325702.1\|1456408_1457008_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.7e-17	33.5
WP_014325701.1\|1457025_1457874_+	ModD protein	NA	NA	NA	NA
WP_005754621.1\|1457973_1459806_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-53	33.7
WP_005723318.1\|1459913_1460810_-	lipoprotein NlpI	NA	NA	NA	NA
WP_005723319.1\|1460893_1463038_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
1463323:1463368	attL	NA	NA	NA	NA
WP_005720092.1\|1463789_1464206_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_064775610.1\|1464252_1465389_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_064775609.1\|1465528_1465855_-	hypothetical protein	NA	NA	NA	NA
WP_069359803.1\|1465902_1470906_-	DUF1983 domain-containing protein	A0A0M3LQ61	Mannheimia_phage	6.2e-250	38.8
WP_014667799.1\|1470909_1471530_-\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4
WP_064775607.1\|1471472_1472216_-	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	1.1e-83	60.0
WP_023430089.1\|1472220_1472934_-\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	2.1e-82	63.9
WP_014390756.1\|1473023_1473353_-	Gifsy-1 prophage VmtM	S5MW28	Escherichia_phage	3.2e-14	37.1
WP_042743193.1\|1473355_1475800_-\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	1.6e-150	57.0
WP_016533322.1\|1475858_1476254_-	hypothetical protein	A0A0M3LR23	Mannheimia_phage	7.7e-55	83.2
WP_016533321.1\|1476321_1476786_-	hypothetical protein	A0A0M3LR40	Mannheimia_phage	5.2e-34	50.0
WP_016533320.1\|1476816_1477488_-	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	1.5e-42	42.9
WP_014390749.1\|1477541_1478024_-\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.0e-44	62.0
WP_016533319.1\|1478035_1478407_-	hypothetical protein	NA	NA	NA	NA
WP_014390747.1\|1478403_1478775_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.3e-24	51.2
WP_014390746.1\|1478779_1479124_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.0e-31	57.9
WP_042743192.1\|1479126_1479495_-	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	4.7e-22	42.1
WP_081317748.1\|1479475_1479889_-	hypothetical protein	A0A0M3LR32	Mannheimia_phage	4.5e-13	73.9
WP_016533288.1\|1479899_1480898_-	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	9.1e-145	74.7
WP_016533289.1\|1480909_1481344_-	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	1.1e-54	75.7
WP_016533290.1\|1481343_1482690_-	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	4.0e-127	55.3
WP_014390740.1\|1482704_1483676_-	hypothetical protein	F1C5D8	Cronobacter_phage	1.6e-53	41.0
WP_016533291.1\|1483629_1485075_-	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	2.4e-146	58.6
WP_016533292.1\|1485089_1486316_-\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	9.4e-192	77.0
WP_014390737.1\|1486299_1486797_-\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.4e-47	70.7
WP_016533497.1\|1486879_1487062_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
WP_014390736.1\|1487090_1487525_+	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	1.0e-20	38.0
WP_064775606.1\|1487559_1487841_-	hypothetical protein	NA	NA	NA	NA
WP_014667795.1\|1487746_1488070_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_014667794.1\|1488042_1488573_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.7e-45	50.9
WP_014391475.1\|1488569_1488830_-	hypothetical protein	NA	NA	NA	NA
WP_143930513.1\|1489043_1489229_-	hypothetical protein	NA	NA	NA	NA
WP_016533470.1\|1489418_1489784_-	hypothetical protein	A0A0M3LR87	Mannheimia_phage	3.5e-09	27.3
WP_064775605.1\|1489783_1490386_-	recombinase NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_016533468.1\|1490473_1490686_-	hypothetical protein	NA	NA	NA	NA
WP_016569985.1\|1490759_1491218_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.8e-38	53.4
WP_041423202.1\|1491207_1491738_-	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_016533441.1\|1491747_1492437_-	replication protein P	D0UIL4	Aggregatibacter_phage	1.4e-32	34.1
WP_016533442.1\|1492436_1493339_-	hypothetical protein	A0A0U4JX08	Bacillus_phage	5.5e-32	37.7
WP_014390722.1\|1493340_1493694_-	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_064775604.1\|1493690_1494392_-	DNA-binding protein	A0A2I7RHG4	Vibrio_phage	7.1e-35	55.8
WP_014391093.1\|1494449_1494677_-	hypothetical protein	NA	NA	NA	NA
WP_005720263.1\|1494745_1494955_-	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
WP_064775603.1\|1495082_1495772_+	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.7e-73	58.2
WP_016533478.1\|1495917_1496181_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_016533477.1\|1496183_1496663_+	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.3e-19	47.1
WP_016533476.1\|1496659_1497043_+	hypothetical protein	NA	NA	NA	NA
WP_016533507.1\|1497661_1497892_+	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	3.4e-10	52.8
WP_014391456.1\|1498116_1498380_+	hypothetical protein	NA	NA	NA	NA
WP_014391102.1\|1498467_1499001_+	hypothetical protein	NA	NA	NA	NA
WP_016569990.1\|1499462_1500098_+	antirepressor	A6XMM0	Bacillus_virus	2.1e-22	53.3
WP_014390710.1\|1500159_1500471_-	hypothetical protein	NA	NA	NA	NA
WP_064775602.1\|1500537_1500822_+	hypothetical protein	NA	NA	NA	NA
WP_016570068.1\|1500808_1501045_+	hypothetical protein	NA	NA	NA	NA
WP_016570067.1\|1501222_1502209_+	hypothetical protein	A0A0M3LR66	Mannheimia_phage	5.8e-51	39.9
WP_016533454.1\|1502212_1503064_+	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-62	63.9
WP_064775601.1\|1503056_1503668_+	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	76.4
WP_016533530.1\|1504147_1504339_+	hypothetical protein	NA	NA	NA	NA
WP_069359804.1\|1505647_1506073_+	hypothetical protein	A0A218KC93	Bacillus_phage	9.0e-17	34.3
WP_155762681.1\|1506077_1506248_+	hypothetical protein	NA	NA	NA	NA
WP_016570062.1\|1506382_1506916_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.3e-20	36.6
WP_016533427.1\|1506925_1507225_+	hypothetical protein	NA	NA	NA	NA
WP_051127937.1\|1507523_1507796_+	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	4.9e-08	41.1
WP_064775600.1\|1508171_1509344_+\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	5.9e-111	52.9
WP_014325699.1\|1509612_1511055_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
1509449:1509494	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2368142 : 2393912

Mannheimia_phage(61.11%)

terminase,head,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005720092.1\|2368142_2368559_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_064775610.1\|2368605_2369742_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_064775609.1\|2369881_2370208_-	hypothetical protein	NA	NA	NA	NA
WP_081317749.1\|2370255_2376150_-	DUF1983 domain-containing protein	A0A0M3LQG1	Mannheimia_phage	1.6e-257	36.1
WP_042743292.1\|2376153_2376744_-\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	3.1e-52	57.1
WP_064775658.1\|2376686_2377427_-	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	1.3e-84	60.0
WP_064775657.1\|2377429_2378134_-\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	1.6e-82	64.1
WP_064775655.1\|2380967_2381663_-	hypothetical protein	NA	NA	NA	NA
WP_016533102.1\|2381967_2382297_-\|tail	phage tail protein	A0A0M3LQW6	Mannheimia_phage	4.8e-26	49.1
WP_016533103.1\|2382666_2383083_-	hypothetical protein	NA	NA	NA	NA
WP_016533104.1\|2383155_2384172_-	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	7.6e-131	69.9
WP_015691079.1\|2384184_2384577_-	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	5.5e-29	46.2
WP_015691078.1\|2384576_2384978_-	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	2.1e-39	61.4
WP_015691077.1\|2384979_2385354_-	hypothetical protein	NA	NA	NA	NA
WP_015691076.1\|2385355_2385823_-	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	1.4e-34	55.7
WP_015691075.1\|2385839_2386076_-	hypothetical protein	NA	NA	NA	NA
WP_015691074.1\|2386132_2387290_-	hypothetical protein	G8C7P7	Escherichia_phage	8.3e-81	43.3
WP_015691073.1\|2387307_2388078_-	hypothetical protein	A0A1V0DY60	Dinoroseobacter_phage	1.5e-25	36.2
WP_015691071.1\|2388413_2388848_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	D0UIJ3	Aggregatibacter_phage	3.1e-41	61.2
WP_015691070.1\|2388822_2389041_-	hypothetical protein	NA	NA	NA	NA
WP_064775738.1\|2389043_2390645_-\|head	phage head morphogenesis protein	A0A0M3LQ07	Mannheimia_phage	3.3e-152	52.1
WP_064775653.1\|2390634_2392038_-	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	4.4e-153	59.6
WP_064775652.1\|2392047_2393319_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	8.6e-148	61.7
WP_081273988.1\|2393321_2393912_-	hypothetical protein	A0A2H4J1J5	uncultured_Caudovirales_phage	4.9e-21	39.5

DBSCAN-SWA_8

2397195 : 2409384

Haemophilus_phage(21.43%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016533462.1\|2397195_2397780_-	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	6.5e-58	55.3
WP_016533461.1\|2397751_2398117_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_143930513.1\|2398330_2398516_-	hypothetical protein	NA	NA	NA	NA
WP_016533470.1\|2398705_2399071_-	hypothetical protein	A0A0M3LR87	Mannheimia_phage	3.5e-09	27.3
WP_064775605.1\|2399070_2399673_-	recombinase NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_016533468.1\|2399760_2399973_-	hypothetical protein	NA	NA	NA	NA
WP_016569985.1\|2400046_2400505_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.8e-38	53.4
WP_041423202.1\|2400494_2401025_-	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_016533441.1\|2401034_2401724_-	replication protein P	D0UIL4	Aggregatibacter_phage	1.4e-32	34.1
WP_016533442.1\|2401723_2402626_-	hypothetical protein	A0A0U4JX08	Bacillus_phage	5.5e-32	37.7
WP_014390722.1\|2402627_2402981_-	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_064775604.1\|2402977_2403679_-	DNA-binding protein	A0A2I7RHG4	Vibrio_phage	7.1e-35	55.8
WP_014391093.1\|2403736_2403964_-	hypothetical protein	NA	NA	NA	NA
WP_005720263.1\|2404032_2404242_-	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
WP_064775603.1\|2404369_2405059_+	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.7e-73	58.2
WP_016533478.1\|2405204_2405468_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_016533477.1\|2405470_2405950_+	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.3e-19	47.1
WP_016533476.1\|2405946_2406330_+	hypothetical protein	NA	NA	NA	NA
WP_016533507.1\|2406948_2407179_+	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	3.4e-10	52.8
WP_014391456.1\|2407403_2407667_+	hypothetical protein	NA	NA	NA	NA
WP_014391102.1\|2407754_2408288_+	hypothetical protein	NA	NA	NA	NA
WP_016569990.1\|2408748_2409384_+	antirepressor	A6XMM0	Bacillus_virus	2.1e-22	53.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP014618.1|WP_075284997.1|1198937_1199060_+|GpE-family-phage-tail-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP014618.1|WP_075284997.1|1198937_1199060_+|GpE-family-phage-tail-protein

1198937_1199060_+

40 aa aa

1167894-1264423

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP014618_2	Unclear	2.7\|2277344\|32\|NZ_CP014618\|CRISPRCasFinder,CRT,PILER-CR	2277344-2277375	32	1207292-1207323	2

1. spacer 2.7|2277344|32|NZ_CP014618|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014618 position: 1207292-1207323, mismatch: 2

attatttctttcaggtgttggggggattgaat	CRISPR spacer
attatttctctcgggtgttggggggattgaat	Protospacer
*********.**.*******************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014618

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information