CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017032	Campylobacter jejuni subsp. jejuni strain MTVDSCj13 chromosome, complete genome	1 crisprs	DEDDh,cas2,cas1,cas9,csa3	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017032_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017032_1

1375293-1375372

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017032_1

>merge|NZ_CP017032|1|1375293-1375372|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP017032|1|1|1375293-1375372|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017032.1\|WP_002780434.1\|1381016_1382201_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP017032.1\|WP_010891933.1\|1375673_1377062_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP017032.1\|WP_002780442.1\|1377164_1377701_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP017032.1\|WP_032586849.1\|1371387_1372059_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP017032.1\|WP_002780438.1\|1378464_1379826_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP017032.1\|WP_002783833.1\|1372055_1373258_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP017032.1\|WP_002923484.1\|1370559_1371384_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP017032.1\|WP_032586853.1\|1382197_1384267_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP017032.1\|WP_002923509.1\|1384765_1385527_-\|CTP:phosphoglutamine-cytidylyltransferase	unknown	unknown	gnl\|CDD\|224134
NZ_CP017032.1\|WP_002860379.1\|1384263_1384776_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NZ_CP017032.1\|WP_002780436.1\|1379822_1380944_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017032.1\|WP_032586847.1\|1369062_1370556_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP017032.1\|WP_002780440.1\|1378048_1378468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017032.1\|WP_002858238.1\|1374891_1375218_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP017032.1\|WP_057038148.1\|1365581_1366922_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP017032.1\|WP_002780441.1\|1377700_1378048_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP017032.1\|WP_032586852.1\|1374318_1374864_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP017032.1\|WP_032586844.1\|1367224_1369066_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP017032.1\|WP_002779147.1\|1367003_1367228_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP017032.1\|WP_002868484.1\|1373260_1374259_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135

Protein	Function_ID	Function_description	E-value
NZ_CP017032.1\|WP_002780434.1\|1381016_1382201_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP017032.1\|WP_010891933.1\|1375673_1377062_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP017032.1\|WP_002780442.1\|1377164_1377701_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91
NZ_CP017032.1\|WP_032586849.1\|1371387_1372059_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.75841e-86
NZ_CP017032.1\|WP_002780438.1\|1378464_1379826_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NZ_CP017032.1\|WP_002783833.1\|1372055_1373258_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP017032.1\|WP_002923484.1\|1370559_1371384_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP017032.1\|WP_002860379.1\|1384263_1384776_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.27859e-100
NZ_CP017032.1\|WP_002923509.1\|1384765_1385527_-\|CTP:phosphoglutamine-cytidylyltransferase	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	1.02897e-74
NZ_CP017032.1\|WP_032586847.1\|1369062_1370556_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	3.41267e-157
NZ_CP017032.1\|WP_032586853.1\|1382197_1384267_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP017032.1\|WP_002858238.1\|1374891_1375218_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NZ_CP017032.1\|WP_057038148.1\|1365581_1366922_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	4.97162e-119
NZ_CP017032.1\|WP_002780441.1\|1377700_1378048_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.95652e-40
NZ_CP017032.1\|WP_032586852.1\|1374318_1374864_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.73912e-58
NZ_CP017032.1\|WP_032586844.1\|1367224_1369066_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP017032.1\|WP_002779147.1\|1367003_1367228_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP017032.1\|WP_002868484.1\|1373260_1374259_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.75115e-168

>NZ_CP017032.1|WP_002858238.1|1374891_1375218_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP017032.1|WP_032586852.1|1374318_1374864_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALGKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP017032.1|WP_002868484.1|1373260_1374259_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP017032.1|WP_002783833.1|1372055_1373258_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP017032.1|WP_032586849.1|1371387_1372059_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGTQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP017032.1|WP_002923484.1|1370559_1371384_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRSLLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP017032.1|WP_032586847.1|1369062_1370556_-|hydrogenase-small-subunit
MAKLSNEELKNILENRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRTTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP017032.1|WP_032586844.1|1367224_1369066_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILNQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP017032.1|WP_002779147.1|1367003_1367228_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP017032.1|WP_057038148.1|1365581_1366922_+|MmgE/PrpD-family-protein
MLYSEILADFIFNLQYENIPDAVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTEKNTPVWVNDKKLDPIYAAMLNGIASHALDFDDTHTEAILHASAILTPLCLSYGFHISKDAKKIIKAFIVGWEVAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGINEFLSNGSNSKVLHIANAIKNGIIVAHFAKNHMSGPLSIFEGRNNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFLDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLESYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRTIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP017032.1|WP_010891933.1|1375673_1377062_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NZ_CP017032.1|WP_002780442.1|1377164_1377701_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP017032.1|WP_002780441.1|1377700_1378048_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NZ_CP017032.1|WP_002780440.1|1378048_1378468_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP017032.1|WP_002780438.1|1378464_1379826_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP017032.1|WP_002780436.1|1379822_1380944_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHVFNIKVDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP017032.1|WP_002780434.1|1381016_1382201_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP017032.1|WP_032586853.1|1382197_1384267_-|capsular-polysaccharide-biosynthesis-protein
MKYYSASKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRILIITQTANDASLEFGLAKDFKTVDMIKDAIKENPDSKIYIKIHPDVLSGKKQSDLDIKSLPKECILITENFNPIALLKFFDKVYTKTSGMGFEALMQGCECVCYSMPFYAGWGLTKDKLECKRRMQKRSLEEVFYVAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNRLFMLGFTLWKRHFIKPFFNAKDNEIIFLNSLKSLAGYKLKENDKFFIWGKRIDYNALKTTLIKKAQDEDLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIIDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVTGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP017032.1|WP_002860379.1|1384263_1384776_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELMQRDQKRLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEKVELIIKKLAL
>NZ_CP017032.1|WP_002923509.1|1384765_1385527_-|CTP:phosphoglutamine-cytidylyltransferase
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMINGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017032_1	1.1\|1375316\|34\|NZ_CP017032\|CRISPRCasFinder	1375316-1375349	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 1.1|1375316|34|NZ_CP017032|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

711442 : 775951

Campylobacter_phage(36.36%)

head,tail,transposase,plate,tRNA,terminase,integrase

attL 695936:695953|attR 741694:741711

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
695936:695953	attL	NA	NA	NA	NA
WP_069360389.1\|711442_713560_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002790751.1\|713648_714506_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	9.6e-26	31.2
WP_002791422.1\|714502_714694_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|714690_714876_+	hypothetical protein	NA	NA	NA	NA
WP_002865075.1\|714930_715362_+	hypothetical protein	NA	NA	NA	NA
WP_002791419.1\|715435_715777_+	hypothetical protein	NA	NA	NA	NA
WP_069360390.1\|715883_716369_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	3.2e-18	34.0
WP_002791416.1\|716365_716545_+	hypothetical protein	NA	NA	NA	NA
WP_002791414.1\|716608_716881_+	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|716877_717264_+	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_069360391.1\|717373_717553_+	hypothetical protein	NA	NA	NA	NA
WP_069360392.1\|717549_717978_+	hypothetical protein	NA	NA	NA	NA
WP_002918730.1\|718029_718221_+	hypothetical protein	NA	NA	NA	NA
WP_002918728.1\|718207_718687_+	phage virion morphogenesis protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
WP_002870187.1\|718825_719959_-	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_014517219.1\|719951_721331_-	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	9.7e-12	22.0
WP_002865465.1\|721327_722854_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
WP_002790261.1\|722943_723258_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|723369_723618_-	hypothetical protein	NA	NA	NA	NA
WP_002827119.1\|723614_723956_-	hypothetical protein	NA	NA	NA	NA
WP_069360393.1\|723966_724356_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	9.4e-21	46.3
WP_002790266.1\|724345_724711_-	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|724707_725061_-	hypothetical protein	NA	NA	NA	NA
WP_069360394.1\|725057_725327_-	hypothetical protein	NA	NA	NA	NA
WP_069360395.1\|725326_726214_-\|head	Mu-like prophage major head subunit gpT family protein	A0A2K9VH18	Faecalibacterium_phage	5.0e-62	43.3
WP_002790001.1\|726213_727254_-	hypothetical protein	NA	NA	NA	NA
WP_002865847.1\|727384_727849_+	DUF1804 family protein	NA	NA	NA	NA
WP_041160235.1\|727845_728478_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	2.3e-08	34.6
WP_002795238.1\|728486_728678_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|728674_728965_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002935508.1\|728961_730128_+\|plate	baseplate J/gp47 family protein	Q8H9N3	Vibrio_phage	3.9e-14	24.6
WP_069360396.1\|730124_730745_+\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	4.0e-58	95.7
WP_060816350.1\|730744_731776_+\|tail	phage tail protein	A7YGU3	Campylobacter_phage	4.8e-189	99.4
WP_002875277.1\|731800_732307_+	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	2.0e-87	100.0
WP_061563589.1\|732303_732675_+	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	5.7e-68	99.2
WP_052806492.1\|732774_733782_+	hypothetical protein	A7YG78	Campylobacter_phage	6.5e-191	99.4
WP_069360397.1\|733800_734991_+\|tail	phage tail sheath family protein	A7YGF4	Campylobacter_phage	1.4e-195	99.0
WP_002789981.1\|735113_735629_+\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	2.6e-10	26.3
WP_002876453.1\|735639_735876_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865793.1\|735859_735997_+	hypothetical protein	NA	NA	NA	NA
WP_002789978.1\|735983_736214_-	hypothetical protein	NA	NA	NA	NA
WP_002876455.1\|736243_738208_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002870151.1\|738209_738584_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002789964.1\|738576_738768_+\|tail	tail protein X	NA	NA	NA	NA
WP_002865687.1\|738761_739730_+\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_069360398.1\|739831_740647_+	DNA adenine methylase	A7YGW6	Campylobacter_phage	1.5e-150	98.2
WP_032593226.1\|740674_740962_-	hypothetical protein	A7YGE5	Campylobacter_phage	1.1e-47	100.0
WP_002843339.1\|741041_741236_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865000.1\|741245_741566_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_069360399.1\|741646_742276_-	LexA family transcriptional regulator	A7YG70	Campylobacter_phage	1.6e-57	95.6
741694:741711	attR	NA	NA	NA	NA
WP_011049776.1\|743408_744203_+	HrcA family transcriptional regulator	NA	NA	NA	NA
WP_002859792.1\|744199_744727_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_069360401.1\|744748_746620_+	molecular chaperone DnaK	A0A167RF67	Powai_lake_megavirus	1.4e-149	47.3
WP_002868517.1\|746879_747902_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002869841.1\|747971_748313_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002860745.1\|748373_749543_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_002860746.1\|749714_750353_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_010891885.1\|750353_752189_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002860747.1\|752185_753412_-\|tRNA	histidine--tRNA ligase	A0A1V0SFH3	Hokovirus	2.0e-24	27.0
WP_002852526.1\|753408_753987_-	dTMP kinase	A0A1L2BX49	Bacteriophage	2.0e-11	33.7
WP_002852633.1\|753977_754454_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.5e-23	39.5
WP_002860748.1\|754493_755057_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_002876101.1\|755053_755716_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_002852406.1\|755799_756576_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002859805.1\|756585_757356_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002859806.1\|757404_758178_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002861419.1\|758369_759281_-	ABC transporter permease	NA	NA	NA	NA
WP_002852619.1\|759277_760288_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-32	38.3
WP_002927948.1\|760292_762905_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.7e-150	41.7
WP_002927949.1\|762927_763947_-	hypothetical protein	NA	NA	NA	NA
WP_002927952.1\|764075_766106_+	ATP-dependent helicase	A7KV33	Bacillus_phage	8.9e-46	27.9
WP_069360402.1\|766146_766887_+	AcfC family adhesin PEB2	NA	NA	NA	NA
WP_032587070.1\|766985_767513_+	thiol peroxidase	NA	NA	NA	NA
WP_002852404.1\|767783_770558_+	periplasmic nitrate reductase subunit alpha	NA	NA	NA	NA
WP_002859812.1\|770575_771316_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_074470854.1\|771312_772095_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_074471030.1\|772091_772616_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_032587067.1\|772620_773535_+	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_002852435.1\|773527_773866_+	chaperone NapD	NA	NA	NA	NA
WP_002859817.1\|773875_774049_+	Sec-independent protein translocase subunit TatA2	NA	NA	NA	NA
WP_002859818.1\|774127_774376_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_002856776.1\|774372_774864_+	hypothetical protein	NA	NA	NA	NA
WP_020246962.1\|774832_775951_+\|tRNA	CCA tRNA nucleotidyltransferase	A0A0U4J6Z1	Vibrio_phage	3.0e-19	34.6

DBSCAN-SWA_2

1395573 : 1410003

Synechococcus_phage(38.46%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032586861.1\|1395573_1396710_-	class I SAM-dependent methyltransferase	M4QRS6	Synechococcus_phage	9.6e-66	41.0
WP_002924761.1\|1396696_1397428_-	glycosyltransferase family 2 protein	E3SJ89	Synechococcus_phage	1.0e-15	26.6
WP_032586859.1\|1397424_1398948_-	capsular biosynthesis protein	B2ZYD9	Ralstonia_phage	2.6e-34	26.8
WP_002923537.1\|1398944_1399343_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	9.0e-11	42.0
WP_002895021.1\|1399397_1400123_-	glycosyltransferase family 2 protein	A0A1D8KNV9	Synechococcus_phage	2.0e-48	47.1
WP_002895019.1\|1400119_1400449_-	hypothetical protein	NA	NA	NA	NA
WP_002923524.1\|1402124_1402760_-	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	7.4e-15	33.0
WP_002923523.1\|1402858_1404058_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002895301.1\|1404065_1404734_-	nucleotidyltransferase family protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	7.8e-07	26.6
WP_002895299.1\|1404721_1405327_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	4.9e-16	35.0
WP_002895298.1\|1405314_1406334_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.1e-59	40.2
WP_002858841.1\|1406409_1407348_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	7.9e-74	46.3
WP_052800531.1\|1407371_1408409_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	5.2e-143	72.3
WP_002895073.1\|1408405_1409458_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	9.2e-63	39.4
WP_002895072.1\|1409457_1410003_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D7XFA9	Escherichia_phage	2.2e-15	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage