CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017124	Lactobacillus curvatus strain WiKim38 chromosome, complete genome	1 crisprs	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csa3,RT	1	2	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017124_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017124_1

881082-881579

TypeII

Consensus_repeat	Method
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	CRISPRCasFinder
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	CRT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	PILER-CR

7 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP017124_1

>merge|NZ_CP017124|1|881082-881579|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACTTAACATTAAACAATTTGACAATGAACGATGTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACGGAAAGTAGGCGGTTAAATGCTGACTTATGGTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACTAAGATGAGCAACCCTAACGAACGTTCAATGTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACATAATCATAAGCCACGCTTATGATATATCAGTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACGAGTGAACCCGCAACTGTTGAAATCTATAAGTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACGCCGTAAATGACTGCGTGGGGCTGTTTTTTGTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACCCTATGGGACGGCTTGTCCGATGGTTGAACGTTTTAGAAGAGTATCAAATCAATAAGTTATTTTTT

>NZ_CP017124|1|1|881082-881579|CRISPRCasFinder
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	TTAACATTAAACAATTTGACAATGAACGAT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GGAAAGTAGGCGGTTAAATGCTGACTTATG
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	TAAGATGAGCAACCCTAACGAACGTTCAAT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	ATAATCATAAGCCACGCTTATGATATATCA
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GAGTGAACCCGCAACTGTTGAAATCTATAA
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GCCGTAAATGACTGCGTGGGGCTGTTTTTT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	CCTATGGGACGGCTTGTCCGATGGTTGAAC
GTTTTAGAAGAGTATCAAATCAATAAGTTATTTTTT

>NZ_CP017124|1|1|881082-881579|CRT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	TTAACATTAAACAATTTGACAATGAACGAT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GGAAAGTAGGCGGTTAAATGCTGACTTATG
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	TAAGATGAGCAACCCTAACGAACGTTCAAT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	ATAATCATAAGCCACGCTTATGATATATCA
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GAGTGAACCCGCAACTGTTGAAATCTATAA
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GCCGTAAATGACTGCGTGGGGCTGTTTTTT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	CCTATGGGACGGCTTGTCCGATGGTTGAAC
GTTTTAGAAGAGTATCAAATCAATAAGTTATTTTTT

>NZ_CP017124|1|1|881346-881513|PILER-CR
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GAGTGAACCCGCAACTGTTGAAATCTATAA
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC	GCCGTAAATGACTGCGTGGGGCTGTTTTTT
GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017124.1\|WP_035187061.1\|885516_886920_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP017124.1\|WP_069468143.1\|883803_885042_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP017124.1\|WP_035186767.1\|880081_880387_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP017124.1\|WP_069468142.1\|882521_883823_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP017124.1\|WP_039099352.1\|881726_882509_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP017124.1\|WP_155760102.1\|887138_887960_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|226785
NZ_CP017124.1\|WP_039099358.1\|870263_871463_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP017124.1\|WP_069468138.1\|872175_873210_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP017124.1\|WP_004270938.1\|879198_880104_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP017124.1\|WP_035186777.1\|871482_871785_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|133457
NZ_CP017124.1\|WP_069468141.1\|880383_881055_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP017124.1\|WP_064777225.1\|888814_889369_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP017124.1\|WP_069468140.1\|874861_878968_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP017124.1\|WP_039099143.1\|889594_890059_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|238615
NZ_CP017124.1\|WP_004270939.1\|869939_870170_+\|DUF2969-domain-containing-protein	unknown	unknown	gnl\|CDD\|371411
NZ_CP017124.1\|WP_069468145.1\|888096_888810_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133396
NZ_CP017124.1\|WP_039099144.1\|890059_891040_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP017124.1\|WP_069468139.1\|873911_874733_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP017124.1\|WP_035186770.1\|873202_873892_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP017124.1\|WP_069468144.1\|885028_885520_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918

Protein	Function_ID	Function_description	E-value
NZ_CP017124.1\|WP_035187061.1\|885516_886920_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP017124.1\|WP_069468143.1\|883803_885042_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP017124.1\|WP_035186767.1\|880081_880387_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	5.30151e-28
NZ_CP017124.1\|WP_069468142.1\|882521_883823_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	1.41323e-117
NZ_CP017124.1\|WP_039099352.1\|881726_882509_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	6.42506e-139
NZ_CP017124.1\|WP_155760102.1\|887138_887960_+\|DNA-alkylation-repair-protein	gnl\|CDD\|226785	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair].	2.93193e-45
NZ_CP017124.1\|WP_039099358.1\|870263_871463_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	1.78192e-97
NZ_CP017124.1\|WP_069468138.1\|872175_873210_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.15751e-153
NZ_CP017124.1\|WP_004270938.1\|879198_880104_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.98976e-91
NZ_CP017124.1\|WP_035186777.1\|871482_871785_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|133457	cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.	1.65937e-30
NZ_CP017124.1\|WP_069468141.1\|880383_881055_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	4.49985e-96
NZ_CP017124.1\|WP_064777225.1\|888814_889369_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.04399e-31
NZ_CP017124.1\|WP_069468140.1\|874861_878968_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	3.15135e-144
NZ_CP017124.1\|WP_039099143.1\|889594_890059_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|238615	cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.	1.02809e-55
NZ_CP017124.1\|WP_004270939.1\|869939_870170_+\|DUF2969-domain-containing-protein	gnl\|CDD\|371411	pfam11184, DUF2969, Protein of unknown function (DUF2969). This family of proteins with unknown function appears to be restricted to Lactobacillales.	1.0973e-18
NZ_CP017124.1\|WP_069468145.1\|888096_888810_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133396	cd04768, HTH_BmrR-like, Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	5.13134e-35
NZ_CP017124.1\|WP_039099144.1\|890059_891040_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	4.77323e-143
NZ_CP017124.1\|WP_069468139.1\|873911_874733_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	4.49473e-99
NZ_CP017124.1\|WP_035186770.1\|873202_873892_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.12899e-92
NZ_CP017124.1\|WP_069468144.1\|885028_885520_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.0002e-58

>NZ_CP017124.1|WP_069468141.1|880383_881055_+|type-II-A-CRISPR-associated-protein-Csn2
MNITFYPYQPFSVQNKKITVCSTSSPEVYTKLIAGMSGAQETVKFSNDQYELMDYSKAVIWGGDVAAINLNHLFQNRLIKKFAAELTDQQRQKLTQLDSEIRSTILDAAFMYELTLDVNQEWDLQRMIKFYNLQFSTAVQHDPYGIIESIVQTAVELNESKIITLINVSHYLSINQFNELVRLVATLNVKLFLIEFSEEVKSDQYQKCCYYHIDNDYVEWRYE
>NZ_CP017124.1|WP_035186767.1|880081_880387_+|CRISPR-associated-endonuclease-Cas2
MRLLVMFDLPVETSEDRKAYRHFRKALLNEGFLMIQYSVYVRVCVSKQSAQFIENRIAGFTPPAGLVQTLMVTEQQYNKMHFLVGESSDDVRNSAERTLIL
>NZ_CP017124.1|WP_004270938.1|879198_880104_+|type-II-CRISPR-associated-endonuclease-Cas1
MSWRTVVISQHAKVSYSGRKIIVQTKDATHQVPIDDIQILLVATTQAVLTASAITELSEAGAKIIFTGKDGNPTCETIADYPGNRSLASIQQQVEWGTGLKETLWTAIIQAKIAMQIQCAQLLGKDIEDLTTEADAMVFADRTNREAVIARKYFQLVFDKDFVRTEYSPINAALNYGYSLLLSAVNREIVCNGYLTQFGIHHHNGVSDFNLGSDLMEPFRPVIDYWVAHQKFNELTPDVKFGLVELLNLELEYNGQITILRNALTKHVQNCLKFMTTPKEEFEVKVVMTHEVPNNALISHV
>NZ_CP017124.1|WP_069468140.1|874861_878968_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MSRPYNIGLDIGTSSIGWSVVDDQSKLVSVRGKYGYGVRLYDEGQTAAERRSFRTTRRRLKRRKWRLGLLREIFEPYITPVDDTFFLRQKQSNLSPKDQRKLYPQTSLFNDRTDRAFYDDYPTIYHLRYKLMTEKRQFDIREIYLAMHHIVKYRGHFLNEAPVSSFKSSEINLVAHFDRLNTIFADLFSESGFQLETDKLAEVKALLLDNQQSASNRQRQALSLIYTPSTNKAVEKQNKAIATELLKAILGLKAKFNVLTGIEAEDVKTWTLTFNAENFDEEMVKLESSLDDNAHQIIESLQELYSGVLLAGIVPENQSLSQAMITKYDDHQKHLKMLKAVREALAPEDRQRLKQAYDQYVDGQENTKAYSKEDFYGDITKALKNNPNHPIVSEIKKLIELDQFMPKQRTKDNGAIPHQLHQQELDRIIENQQQYYPWLAELNPNSKRQTVAKYKLDELVAFRVPYYVGPLITAEQQQQSSDAKFAWMIRKAEGQITPWNFDDKVDRQASANEFIKRMTTTDTYLLAEDVLPKQSLIYQRFEVLNELNGLKIDDQPITTELKQAIFTDLFMQKTSVTVKNIQDYLVSEKRYASRPAITGLSDENKFNSRLSTYHDLKAIVGDAVDDVDKQADLEKCVEWSTIFEDGKIYSAKLNEIDWLTDQQRVQLAAKRYRGWGRLSAKLLTQIVNANGQRIMDLLWDTTDNFMRIVHSEDFDKLITEANQMMLAENDVQDVINDLYTSPQNKKALRQILLVVNDIQKAMKGQAPERILIEFAREDEVNRRLSVQRKRQVEQVYQNISNELLNNTEIRNELKDLSNSALSNTRLFLYFMQGGRDMYTGDSLNIDRLSTYDIDHILPQSFIKDNSLDNRVLVSQKMNRSKADQVPTDFTSVELGKKMQLQWEQMLRAGLITKKKYDNLTLNPDHISKYAMKGFINRQLVETRQVIKLATNLLMEQYGEDNIELITVKSGLTHQMRTEFDFPKNRNLNNHHHAFDAYLTAFVGLYLLKRYPKLKPYFVYGEYQKASQQDKWRNFNFLNGLKKDELVDENTEAVIWDKESGLAYLNKIYQFKKILVTREVHENSGALFNQTLYAAKDDKASGQGGKQLIPAKQNRPTALYGGYSGKTVAYMCIVRIKNKKGDLYKVCGVETSWLAQLKQLTDEDSQKAFLKQKISPQFTKVKKQKGTIVKVVEDFEVIAPHILINQRFFDNGQELTLGSATYKHNEQELILDKTAVKLLNGALPLTQSEELAEQVYDEILDQVMHYFPLYDTNQFRAKLSAGKAAFMKLPWKSQWDGNKMVQVGQQVILDRVLIGLHANAAVSDLGILKLTTPFGKLQKSSGIYLSPDTQIIYQSPTGLFERRVALRDL
>NZ_CP017124.1|WP_069468139.1|873911_874733_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKRSLGLLAAVFLLAGALAACGNKEAKSDSNTIVVGASAIPHAAILKHIQPELKKEGINLKVKVFSDYVLPNKALASGELDANYYQHKPFLKKANKDNGYDLVSVGSIHLEPLGLYSKQVKKLSDVKSGAKVLVSSSQPDWGRVLTILKDGGLITLKSGVNTENATFKDIASNPKHLKFEYTFEPKLMPELLKNDEGTLVAINSNYAVQAGLNPEKDAAALEKQSSPFANIVVTNKKDRNNPAIKKLVKALKSKSTQEWIKNKWHGAVLPVE
>NZ_CP017124.1|WP_035186770.1|873202_873892_+|ABC-transporter-permease
MDNVNGFQSYFQFKQVNWPSMWQATFETVWLTIVSVLLVAVLGFALGLVLYQTNASGGRVNRLLNGIVALLVNVFRSIPFIILIVLLIPLTKGLMGTMIGPKAAIPALIISAAPFYARLVELAFREVDGGVLEATRSMGASKVQIVWQVLLPESMPALVSGLTVTAISLVGYTAMAGVIGAGGLGNLAYQDGFQANQNAITLVATVIILIIVFICQKTGDLVVQHIDHR
>NZ_CP017124.1|WP_069468138.1|872175_873210_+|methionine-ABC-transporter-ATP-binding-protein
MLTLKQVGKTFEREQKTFAALTDVSLNIEAGEIYGIIGYSGAGKSTLIRLLNGLEKPTTGDVLVEGQSIVGLSEQAMRPIRQKIGMIFQHFNLLWSKTVLENIMLPLKLAGVPKAERQIKARALLKIVELTHLEAAYPSELSGGQKQRVAIARALISDPKTLLCDEATSALDPKTTNSILTLLAKINREMGITIVLVTHEMDAVRRICQRIAVMENGRLIEEGTVHEIFEKPQMAATKAFVAESLVVSPSETAASIDQLLERVPNGTIVQLRFNEEQSSQPVIGRLMRQYPAVEISVISGSLQQTINGALGYLYIQIQANPSDLKAVLAELAQQTIEVEVVRHG
>NZ_CP017124.1|WP_035186777.1|871482_871785_+|glycine-cleavage-system-protein-H
MNNNDYFWTEEIAASIRRIGITKAAQNEFGLIKFVDVPIVGQKLTANETLVAIEAEKMVQDLDSPLAGELVNVNTPLADNPELLNADNEKDAWIADIRVD
>NZ_CP017124.1|WP_039099358.1|870263_871463_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MPKEVETTEDSSRVDYGIVFSVFMLALIGLMSIYVATSHDTSGASSTRAVIMQAAWYVIGGIAIVAIMQFDSEQLWRIAPLAYGLGIFLLIAVLIFYNRAVALQTGAKSWFSLGPISFQPSEVMKPAYILMLGRVVTQHNTAYPEHTIKTDWMLLGRMLLWTLPVMVLLKLQNDFGTLLVFVAILGGIVLVSGVTWKILAPAIAVLVAVGGTALTLAATTPGRVILTHLGFKTYQFNRIDAWLHPFDNTASTSLQLSQSLKAIGSGQLFGKGFNQVQVHVPVRESDMIFSVIGENFGFVGSCFVILLYFLLIYQMIRVTFDTKNEFYAYVSTGIIMMILFHVFENIGMSVGLLPLTGIPLPFISQGGSSLLGNLIGVGFIMSMRYHYKSYMFSEAEDTF
>NZ_CP017124.1|WP_004270939.1|869939_870170_+|DUF2969-domain-containing-protein
MSKKEQKITVTIDDIKRNGQEMTSVMVGKNEIGVIVEDSAKKRFEATVEGTGQSIITKTHDDAVNELLREYHLHQG
>NZ_CP017124.1|WP_039099352.1|881726_882509_+|Fe-S-cluster-assembly-ATPase-SufC
MSKLEIIDLHVGIDGKEILKGVNLEMNTGEIHAIMGPNGTGKSTLSETIMGNPKYEVLQGQIKLDGQNILEMPVDERARAGLFLAMQYPAEIQGVTNAEFMRAAINARRAEDDQISVMAFLKKLDQRMAFLDMTEEMSERYLNEGFSGGEKKRNEILQLMMIEPKFAILDEIDSGLDIDALQVVSKGVNEMRGADFGSLIITHYQRLLNYIVPDYVHIMMGGKIVTTGDASLAKRLEDEGYVGIRDELGLDIKLTDDESK
>NZ_CP017124.1|WP_069468142.1|882521_883823_+|Fe-S-cluster-assembly-protein-SufD
MKKTLAITPEQIASFSQLHQEPAWFAEMRQAAFAQIEQLELPIFEKINYKHWPVMAASAPTAVKSDLNLMPSAAANLSADQPYAVQIGQTTAKLNLPAELAEQGVIFTDIFTALQEHPDLVQQYYMQVTVKPNEDRLTAFHTALMNSGLFLYVPKNVVIKQPITAYYVQDSTQPADFIHHVLVVAEQNSEFSYLENLQTAGDHKNLANVIVEVIAKDNSHVHFSAVDAFGKSVTTYLNRRGHLMRDARIDWALGSMNDGNIIGDFDSDLVGAGSHAETKVVAISTGKQIQGIDTRVTNIGPRSIGHILQHGVILEDATLTFNGIGHILKGAKGADAQQENRVLMLSRTARGDANPLLLIDENDVQAGHAASVGRVDEQQMYYLMSRGLSKEVAQRLVIRGFLGAVLSEIPDKNVRQQLTDTIERKLIDGQPVK
>NZ_CP017124.1|WP_069468143.1|883803_885042_+|cysteine-desulfurase
MVNQLNDYRCDFPILDQIVNDEPLVYLDNAATTQKPQAVIDRLVAYYQNDNANVHRGVHTLAERATAQYEAARTKVQTFIHAAASAEVIFTKGTTQSLNWVAGSFGPTVVEAGDEIMISVMEHHSNLVPWQQLAQKTGAKLRYIDLLPDGQLDLQSARQVIGPKTKIVSLAHASNVLGVVNPIKTIAALVHAQGGYMVVDGAQAVPHMMVDVQALDADFYAFSGHKMLGPTGIGVLYGKQALLEQMPPVEYGGEMIDFVGLQSSTFKELPWRLEGGTPNIAGAIGLGAAIDYLTQIGMDHIQAHEQALVTMALPQLQAIDGLTIYGPQDAAQRTGVIAFNLDNLHPHDLATALDMEGVAVRAGHHCAQPLMQWLNVAATARASFYLYNTEADVKTFVTAIQAAKEFFQNGTL
>NZ_CP017124.1|WP_069468144.1|885028_885520_+|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALSKLDNLYRQVILDHSQHPHHHGHLTTADHEIELRNPTCGDVLQLELVLEDGQISQIAFSGEGCTISQASASMMTDAVMHKTPAQAEAMIERFSDMMIGDRDEDWSLLEDAAILQGVQQFPARIKCATLAWKALHKALNSDDRRATTGQMMNHAEREETNE
>NZ_CP017124.1|WP_035187061.1|885516_886920_+|Fe-S-cluster-assembly-protein-SufB
MTEETTMPQFEEYDYGFSDDVEPVFSTGRGLTEDVVRAISREKKEPQWMLDFRLKSFHAYEKMPMPDFGPDLSDLDLEHMLYYQKATDKQYRDWEDVPDKIKETFDRLGVPEAERKYLAGSSAQYESEVVYHNMREEFEKLGIIFTDMDTGLREYPEIVKEYFSTLVKPTDNKFSALNSAVWSGGTFIYVPKGVRTDIPIQSYFRINAENSGQFERTLIIVDEGASVNYVEGCTAPSYSSDSLHAAVVEVFVKRDGYCRYTTIQNWSKNVYSLETKRAQAMENATMEWVDGNLGSKMTMKYPSVYLDGEGARGTMLSIAVAGEGVDQDSGARMIHAAPNTSSSIVSKSIAKDGGAVDYRGTVRFERDSDGSFAHVECDTIIMDDRSSSDTIPYNTILNGNVSMEHEAKVSKISEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLISYEMEGSVG
>NZ_CP017124.1|WP_155760102.1|887138_887960_+|DNA-alkylation-repair-protein
MVDCKINPNSVRINFTIYQSSSAEFAIRTFILQEPDRTMSQMQAWAQSSNAHVRRLASEGCRPRLPWGESLPIFKADPQPVLAILEQLKNDPELYIRRSVANNLNDIAKDHPALVIQTAHRWQGASPEVDWVIRHGCRTLLCKDFVSVRDLFGYAGDRQDQPLVVAATITTRSKEVAIGDRLAFEYRIRFRAEAGLLIRVEYAVDYVKANGQQSRKLFKLVEKKIDGRQGLQGERQINFKDLTTRKHYPGLHQVALIVNGQAVAKTEFEVRRG
>NZ_CP017124.1|WP_069468145.1|888096_888810_+|MerR-family-transcriptional-regulator
MAEKLLTISKFAQLFNTTQHTIRHYEQQGLLQPATIAANGYRQYGMAEAYQLSFILFLRQLGLSLAEIKAILTSYYSEQTLLLNKKQALQEEIARLQALEQTIDDQLQQVNQQDTLQVDQPIHLRVLQRLPFAQDFDLSVVETIDWQPDWMLRQLYYVINETDYAICMATPAVSDYQIDAGCYVTTTIEAASGAEFDSALAAITTHQTLPLIGIEMRGTFLSPGKHLAVKILGNRKE
>NZ_CP017124.1|WP_064777225.1|888814_889369_+|GNAT-family-N-acetyltransferase
MQLETQRLILRPFELTDDQAIYEYAKDPDIGPIAGWPVHTSVAHSRELIQNYLMAKAIFAVNLKTAPNHAIGSVGLELVENGGGQPFMGANDAEIGYWIGVPYWGQGLIPEAAEKILAYGFETLKLDNIWCGYYDGNQQSKRAQEKLGFQPVLTIDEMYNPLLDDTRQEHFTKMTKAQWQARHQ
>NZ_CP017124.1|WP_039099143.1|889594_890059_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MTRLNTTEIMALIPNRYPIIYIDTVESLVPGQEVVAVKNVTINEQFMRGYRPDAPQMPNTLMIEALAQTASILILKSPEFFGKTAYLGAAKNVVFNRVILPGDQIKFTVTLTKKKENMGVVQTHATVNDQVVCEAELTFVVAPRDDLLKSQQAT
>NZ_CP017124.1|WP_039099144.1|890059_891040_+|ketoacyl-ACP-synthase-III
MAYRIIATASAVPDKIVTNDDLAEILETSNDWIESRTGIIERHMAVDENTSDLCYRVAEKLLAQANVAPEQIKAIIVATMTPDYYTPATAAIVQGKLGATHAFAFDISAACSGFTYALSVARGYIQFSTDYVLVIGGEVTSKVLDWSDRSSAVLFGDGAAGVLLQGTSAEADGWYGEQLLTIGSQSEQLTSGYTPVTQANFGQVGQTHIQSSFFQMSGQAIYQFSTRQVPQAIETAVLAAGLSLDQVDHFLVHQANARLITRMASKLNQQLSKFPMNLQHYGNTSAASIPLLLAEQVATGQIKRGDLCVLCGFGGGLTIGIQIIQY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017124_1	1.3\|881250\|30\|NZ_CP017124\|CRISPRCasFinder,CRT	881250-881279	30	NZ_CP017124.1	698073-698102	2	0.933

1. spacer 1.3|881250|30|NZ_CP017124|CRISPRCasFinder,CRT matches to position: 698073-698102, mismatch: 2, identity: 0.933

taagatgagcaaccctaacgaacgttcaat	CRISPR spacer
taagatgagcaacccaaatgaacgttcaat	Protospacer
*************** **.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017124_1	1.4\|881316\|30\|NZ_CP017124\|CRISPRCasFinder,CRT	881316-881345	30	MK448711	Streptococcus phage Javan235, complete genome	6805-6834	7	0.767
NZ_CP017124_1	1.7\|881514\|30\|NZ_CP017124\|CRISPRCasFinder,CRT	881514-881543	30	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	197590-197619	9	0.7

1. spacer 1.4|881316|30|NZ_CP017124|CRISPRCasFinder,CRT matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 7, identity: 0.767

ataatcataagccacgcttatgatatatca	CRISPR spacer
tatcccataagccacgcttctgatacatca	Protospacer
    .************** *****.****

2. spacer 1.7|881514|30|NZ_CP017124|CRISPRCasFinder,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 9, identity: 0.7

cctatgggacggcttgtccgatggttgaac	CRISPR spacer
tctctgggacggcttgtccgatctcggtgt	Protospacer
.** ******************  . * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13151 : 20953

Leptospira_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172821848.1\|13151_14555_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	2.8e-131	53.9
WP_003592463.1\|14874_15804_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	2.3e-25	34.4
WP_069467796.1\|15975_17322_-	purine permease	Q9KX94	Enterobacteria_phage	1.6e-38	28.9
WP_064776763.1\|17689_18430_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_004265810.1\|18429_19308_+	nucleoid occlusion protein	S5VTK0	Leptospira_phage	1.8e-19	40.6
WP_004265824.1\|19320_20088_+	ParA family protein	Q8JL10	Natrialba_phage	1.3e-29	33.0
WP_004265828.1\|20077_20953_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	2.9e-17	41.2

DBSCAN-SWA_2

35474 : 99145

Staphylococcus_phage(11.76%)

transposase,tRNA,integrase,holin

attL 71644:71672|attR 81355:81383

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065825101.1\|35474_36635_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.5e-21	31.2
WP_081326632.1\|36783_37923_-	MFS transporter	NA	NA	NA	NA
WP_039098416.1\|37989_39147_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_065825099.1\|39191_39980_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_069467803.1\|40100_41045_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_004265855.1\|41149_41638_+	universal stress protein	NA	NA	NA	NA
WP_039098414.1\|41713_42253_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_064776753.1\|42342_42834_+	hypothetical protein	NA	NA	NA	NA
WP_069467804.1\|42857_43694_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-10	25.2
WP_039098410.1\|43680_44415_+	hypothetical protein	NA	NA	NA	NA
WP_039098409.1\|44547_45483_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_004265799.1\|45500_45968_+	universal stress protein	NA	NA	NA	NA
WP_069467805.1\|45992_46721_+	hypothetical protein	NA	NA	NA	NA
WP_004265779.1\|46804_47020_+	hypothetical protein	NA	NA	NA	NA
WP_039098407.1\|47225_48413_-	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	1.5e-48	37.8
WP_069467806.1\|48568_49609_+	AI-2E family transporter	NA	NA	NA	NA
WP_064776747.1\|49999_50197_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_069467807.1\|50289_51342_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_039098402.1\|51534_51975_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_069467808.1\|52022_52478_-	hypothetical protein	NA	NA	NA	NA
WP_069467809.1\|52716_53613_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-24	31.6
WP_069467810.1\|53605_54859_+	ABC transporter permease	NA	NA	NA	NA
WP_069467811.1\|54939_56019_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_069467812.1\|56123_58019_+	peptidase M13	E3T4I7	Cafeteria_roenbergensis_virus	2.0e-71	29.3
WP_039099055.1\|58098_58698_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_039099056.1\|58883_59555_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_069467813.1\|59547_60360_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_069467814.1\|60352_61162_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_069467815.1\|61566_63585_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_004271031.1\|63638_64586_-	DUF1002 domain-containing protein	NA	NA	NA	NA
WP_004271030.1\|64696_65830_-	VanZ family protein	NA	NA	NA	NA
WP_069467816.1\|66095_67376_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	5.9e-64	34.7
WP_054644091.1\|67545_68856_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.5e-49	32.6
WP_056966448.1\|68999_69662_+	class A sortase	NA	NA	NA	NA
WP_069467818.1\|70115_70688_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081326578.1\|70861_71629_+	helix-turn-helix transcriptional regulator	A0A0A7S0F1	Clostridium_phage	2.9e-05	37.4
71644:71672	attL	NA	NA	NA	NA
WP_081326579.1\|71770_72373_-\|integrase	site-specific integrase	J7KBT5	Streptococcus_phage	1.0e-37	45.8
WP_004271103.1\|73913_75290_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_069467819.1\|75474_76746_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	3.3e-46	31.0
WP_003553069.1\|77107_78277_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_064776730.1\|78838_79072_-	hypothetical protein	NA	NA	NA	NA
WP_069467820.1\|79096_79360_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	7.9e-32	92.0
WP_064776728.1\|79400_80243_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-155	98.2
WP_004271125.1\|81670_82384_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.1e-42	40.6
81355:81383	attR	NA	NA	NA	NA
WP_039099538.1\|82393_84298_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.6e-33	33.7
WP_069467821.1\|84287_85619_+	hypothetical protein	NA	NA	NA	NA
WP_039099540.1\|85623_86439_+	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_004271122.1\|86475_87282_+	MBL fold metallo-hydrolase	A0A2H4J3R0	uncultured_Caudovirales_phage	1.1e-31	30.9
WP_069467822.1\|87451_88690_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.3e-17	27.1
WP_064776725.1\|89202_89682_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_081326580.1\|89809_90343_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_069468528.1\|91207_92674_+	MFS transporter	NA	NA	NA	NA
WP_069467824.1\|92823_94617_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_069467825.1\|94642_96088_+	family 1 glycosylhydrolase	NA	NA	NA	NA
WP_069467826.1\|96173_97010_+	PRD domain-containing protein	NA	NA	NA	NA
WP_069467827.1\|97183_97753_-	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_069467828.1\|97788_98121_+	hypothetical protein	NA	NA	NA	NA
WP_003592463.1\|98215_99145_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	2.3e-25	34.4

DBSCAN-SWA_3

641261 : 696373

Oenococcus_phage(29.41%)

head,tail,tRNA,capsid,terminase,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069468018.1\|641261_642191_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_069468019.1\|642215_643472_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_069468021.1\|644442_644988_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_069468022.1\|645110_645482_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_039098814.1\|645496_646840_+	type I glutamate--ammonia ligase	A0A167RK87	Powai_lake_megavirus	1.7e-13	27.8
WP_039098816.1\|646899_647595_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_004265345.1\|647594_647762_+	hypothetical protein	NA	NA	NA	NA
WP_069468023.1\|647820_648372_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.4e-14	32.0
WP_069468024.1\|648577_649471_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_069468025.1\|649489_650290_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_039099662.1\|650337_651654_-	multidrug transporter MatE	NA	NA	NA	NA
WP_039099661.1\|651664_652492_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004265264.1\|652600_653614_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_004270892.1\|653704_653944_-	steroid-binding protein	NA	NA	NA	NA
WP_052202779.1\|654138_654474_+	hypothetical protein	NA	NA	NA	NA
WP_069468026.1\|654654_655032_-	hypothetical protein	NA	NA	NA	NA
WP_004270893.1\|655134_655635_+	VanZ family protein	NA	NA	NA	NA
WP_004270897.1\|655724_656456_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_069468027.1\|656559_657435_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_069468028.1\|657424_658426_+	type II secretion system F family protein	NA	NA	NA	NA
WP_069468029.1\|658478_659903_-	recombinase family protein	A0A141E0M0	Streptococcus_phage	2.6e-100	42.5
WP_069468030.1\|660011_660713_-	hypothetical protein	NA	NA	NA	NA
WP_069468031.1\|660705_661128_-	hypothetical protein	NA	NA	NA	NA
WP_069468032.1\|661120_662029_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	3.3e-32	36.8
WP_069468033.1\|662128_663115_-	DUF4236 domain-containing protein	A0A2K9V2W7	Faecalibacterium_phage	5.9e-11	63.1
WP_143435696.1\|663251_663881_-	hypothetical protein	NA	NA	NA	NA
WP_069468034.1\|663988_664834_-	hypothetical protein	NA	NA	NA	NA
WP_069468035.1\|664893_665295_-	ImmA/IrrE family metallo-endopeptidase	A0A0M7RF74	Lactobacillus_phage	3.8e-17	39.3
WP_069468036.1\|665294_665630_-	helix-turn-helix transcriptional regulator	E9LUL4	Lactobacillus_phage	7.0e-25	50.9
WP_069468037.1\|665778_666006_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155760082.1\|666024_666189_+	hypothetical protein	NA	NA	NA	NA
WP_069468537.1\|666305_666800_+	helix-turn-helix transcriptional regulator	O03909	Lactobacillus_phage	7.1e-50	59.5
WP_069468039.1\|667240_667438_+	hypothetical protein	NA	NA	NA	NA
WP_069468040.1\|667437_668205_+	phage recombination protein Bet	A8ATK8	Listeria_phage	2.1e-56	51.9
WP_081326635.1\|668227_668956_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A1S5S9Y4	Streptococcus_phage	1.6e-45	44.4
WP_069468042.1\|668967_669384_+	single-stranded DNA-binding protein	G4KNN8	Staphylococcus_phage	1.3e-23	46.1
WP_069468043.1\|669394_670360_+	DnaD domain protein	A6M985	Geobacillus_virus	2.0e-40	41.0
WP_069468045.1\|670559_671090_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081303843.1\|671061_671268_+	hypothetical protein	NA	NA	NA	NA
WP_155760086.1\|671267_671429_+	hypothetical protein	NA	NA	NA	NA
WP_069468046.1\|671425_671884_+	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.9e-60	70.7
WP_069468047.1\|671954_672242_+	hypothetical protein	NA	NA	NA	NA
WP_155760088.1\|672255_672426_+	hypothetical protein	NA	NA	NA	NA
WP_065825501.1\|672459_672798_+	hypothetical protein	NA	NA	NA	NA
WP_069468048.1\|672808_673156_+	hypothetical protein	A0A191ZDH8	Pseudoalteromonas_virus	4.6e-11	37.5
WP_039098605.1\|673283_673748_+	DUF1064 domain-containing protein	A0A1I9KKZ1	Lactobacillus_phage	1.2e-33	50.3
WP_065825503.1\|673759_673963_+	hypothetical protein	NA	NA	NA	NA
WP_065825504.1\|673982_674165_+	hypothetical protein	NA	NA	NA	NA
WP_039098607.1\|674164_674401_+	hypothetical protein	NA	NA	NA	NA
WP_065825505.1\|674514_674940_+	hypothetical protein	O03925	Lactobacillus_phage	5.2e-33	48.6
WP_069468049.1\|675433_676339_+	hypothetical protein	NA	NA	NA	NA
WP_155760091.1\|676582_676753_+	hypothetical protein	NA	NA	NA	NA
WP_069468050.1\|676752_677577_+\|terminase	terminase small subunit	V9QKX0	Oenococcus_phage	6.3e-67	49.6
WP_069468051.1\|677569_678844_+\|terminase	PBSX family phage terminase large subunit	V5UQR5	Oenococcus_phage	3.6e-186	71.6
WP_081326598.1\|678743_680303_+\|portal	phage portal protein	V9QKI8	Oenococcus_phage	3.1e-147	53.5
WP_069468053.1\|680244_680559_+\|protease	ribosomal-processing cysteine protease Prp	D2J003	Enterococcus_phage	2.7e-10	45.4
WP_069468054.1\|680561_681755_+\|capsid	minor capsid protein	V5UTD3	Oenococcus_phage	3.1e-91	46.4
WP_069468055.1\|681923_682568_+	DUF4355 domain-containing protein	Q6SE80	Lactobacillus_prophage	6.7e-24	34.6
WP_069468056.1\|682580_682937_+	hypothetical protein	V5UQS0	Oenococcus_phage	1.6e-30	53.4
WP_039098617.1\|682959_684021_+\|capsid	major capsid protein	V9QKJ3	Oenococcus_phage	2.0e-126	65.6
WP_155760093.1\|684035_684356_+\|head,tail	phage head-tail connector protein	V5UQW8	Oenococcus_phage	8.8e-17	57.9
WP_069468057.1\|684352_684742_+	hypothetical protein	D7RWJ2	Brochothrix_phage	1.6e-25	55.9
WP_069468058.1\|684689_685235_+	hypothetical protein	V5URV0	Oenococcus_phage	1.3e-52	58.8
WP_069468539.1\|685236_685602_+	hypothetical protein	Q6SE74	Lactobacillus_prophage	7.2e-23	42.5
WP_069468059.1\|685614_686079_+\|tail	phage tail protein	V9QKJ6	Oenococcus_phage	1.7e-40	59.3
WP_069468060.1\|686350_686755_+	hypothetical protein	A0A182BQ86	Lactococcus_phage	4.5e-34	58.5
WP_081326601.1\|686775_687156_+	hypothetical protein	D7RWJ9	Brochothrix_phage	8.6e-19	43.0
WP_069468061.1\|687167_691985_+	hypothetical protein	D2J014	Enterococcus_phage	1.0e-172	45.2
WP_069468062.1\|692000_692360_+	hypothetical protein	V9QIZ3	Oenococcus_phage	5.0e-29	52.6
WP_069468063.1\|692371_696373_+	hypothetical protein	D7RWK2	Brochothrix_phage	9.0e-151	35.9

DBSCAN-SWA_4

717513 : 725747

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039099495.1\|717513_717840_-	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	2.4e-06	35.6
WP_004270080.1\|717855_718221_-	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_064777296.1\|718330_719326_-	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	2.2e-45	35.3
WP_039098727.1\|719478_721773_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.3e-74	31.4
WP_004270038.1\|721807_722326_+	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	2.8e-12	31.1
WP_069468086.1\|722544_723159_-	transcriptional repressor LexA	A0A1B1P7Q3	Bacillus_phage	1.3e-16	57.4
WP_004270057.1\|723294_723537_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_004270078.1\|723617_723845_+	YneF family protein	NA	NA	NA	NA
WP_069468087.1\|724001_725747_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.0e-45	27.7

DBSCAN-SWA_5

828321 : 836360

Acanthocystis_turfacea_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004269980.1\|828321_829041_+	aquaporin family protein	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	1.3e-28	34.5
WP_039098874.1\|829428_830802_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.6e-43	29.3
WP_004270037.1\|830845_831325_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	6.5e-16	37.5
WP_004270002.1\|831469_831637_-	hypothetical protein	NA	NA	NA	NA
WP_069468129.1\|831775_833821_+	KUP/HAK/KT family potassium transporter	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	1.7e-68	35.4
WP_064777244.1\|834046_834655_+	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	9.2e-23	49.7
WP_004270016.1\|834793_835063_+	hypothetical protein	NA	NA	NA	NA
WP_052202731.1\|835094_836360_+	Y-family DNA polymerase	M1Q231	Streptococcus_phage	4.1e-81	39.0

DBSCAN-SWA_6

1084056 : 1091696

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004270297.1\|1084056_1084899_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.9e-19	41.9
WP_004270296.1\|1085099_1085594_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	3.2e-26	38.6
WP_069468226.1\|1085609_1086560_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.4e-126	66.2
WP_069468227.1\|1086940_1088824_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.2e-50	29.9
WP_004270303.1\|1088966_1089428_-	hypothetical protein	NA	NA	NA	NA
WP_069468228.1\|1089491_1090691_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-32	40.6
WP_069468229.1\|1090838_1091696_+	YitT family protein	M1Q1P6	Streptococcus_phage	8.6e-59	41.5

DBSCAN-SWA_7

1191457 : 1246948

unidentified_phage(27.78%)

transposase,lysis,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107504406.1\|1191457_1192597_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004270492.1\|1192778_1193126_-	DUF1831 domain-containing protein	NA	NA	NA	NA
WP_069468263.1\|1193183_1194347_-	cysteine desulfurase	H7BUW1	unidentified_phage	4.8e-28	35.7
WP_064777087.1\|1194486_1195323_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA
WP_004270481.1\|1195347_1195653_-	hypothetical protein	NA	NA	NA	NA
WP_004270477.1\|1195673_1196387_-	aquaporin family protein	A0A1J0F964	Only_Syngen_Nebraska_virus	1.1e-19	31.2
WP_069468264.1\|1196450_1196885_-	DUF111 family protein	NA	NA	NA	NA
WP_069468265.1\|1196901_1197768_-	LarC family nickel insertion protein	NA	NA	NA	NA
WP_064777085.1\|1197764_1198547_-	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	1.3e-21	41.5
WP_039099459.1\|1198558_1199833_-	nickel-dependent lactate racemase	NA	NA	NA	NA
WP_039099460.1\|1200065_1200731_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_065825739.1\|1200828_1201836_+	cobalt transporter CbiM	NA	NA	NA	NA
WP_039099462.1\|1201912_1202629_+	cobalt ABC transporter permease	NA	NA	NA	NA
WP_069468266.1\|1202633_1203359_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.9e-15	31.0
WP_069468267.1\|1203397_1204369_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_172821856.1\|1204504_1204645_-	hypothetical protein	NA	NA	NA	NA
WP_069468268.1\|1204653_1205298_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_069468269.1\|1205313_1206258_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	3.8e-76	46.1
WP_064777079.1\|1206254_1206596_-	thioredoxin family protein	NA	NA	NA	NA
WP_172821857.1\|1207827_1208283_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_004271133.1\|1208388_1208649_-	hypothetical protein	NA	NA	NA	NA
WP_069468270.1\|1208784_1209693_-\|transposase	IS30 family transposase	H7BW47	unidentified_phage	9.5e-24	34.1
WP_039099554.1\|1210080_1210773_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_004271135.1\|1210814_1211105_-	hypothetical protein	NA	NA	NA	NA
WP_039099553.1\|1211116_1211659_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004271132.1\|1211835_1212516_+\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	NA	NA	NA	NA
WP_069468271.1\|1212515_1213709_+	toxic anion resistance protein	A0A2K9VCT6	Lactobacillus_phage	9.2e-35	31.0
WP_064777074.1\|1213764_1215198_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	3.6e-25	25.5
WP_069468272.1\|1215377_1216298_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	6.0e-50	37.9
WP_064777073.1\|1216345_1217743_-	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_069468273.1\|1219470_1220400_-\|transposase	IS30-like element ISLpl1 family transposase	H7BVY4	unidentified_phage	3.9e-25	30.1
WP_069468275.1\|1221769_1223032_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	2.3e-84	42.3
WP_004270977.1\|1223434_1223635_-	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	2.2e-18	66.2
WP_069468276.1\|1223741_1224782_-	galactose mutarotase	NA	NA	NA	NA
WP_069468277.1\|1224801_1226283_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_069468278.1\|1226293_1227286_-	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.6e-45	35.3
WP_039099501.1\|1227314_1228481_-	galactokinase	NA	NA	NA	NA
WP_069468279.1\|1228619_1229612_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003592463.1\|1230156_1231086_-\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	2.3e-25	34.4
WP_069468280.1\|1231642_1233718_-	DNA topoisomerase 3	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	3.6e-18	23.1
WP_069468281.1\|1234912_1235134_-	hypothetical protein	NA	NA	NA	NA
WP_016377101.1\|1235213_1235678_-	hypothetical protein	NA	NA	NA	NA
WP_069468282.1\|1235695_1237705_-	AAA family ATPase	NA	NA	NA	NA
WP_155737225.1\|1237701_1237872_-	hypothetical protein	NA	NA	NA	NA
WP_069468283.1\|1237871_1239245_-	DEAD/DEAH box helicase family protein	A0A1I9SEY1	Klebsiella_phage	4.1e-10	23.9
WP_069468284.1\|1239241_1242490_-	hypothetical protein	NA	NA	NA	NA
WP_069468285.1\|1242601_1242982_-	hypothetical protein	NA	NA	NA	NA
WP_069468286.1\|1243689_1245063_-	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	1.9e-55	35.8
WP_069468287.1\|1245065_1245620_-	hypothetical protein	NA	NA	NA	NA
WP_069468288.1\|1246018_1246948_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.2e-23	29.5

DBSCAN-SWA_8

1340218 : 1348564

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069468318.1\|1340218_1340836_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.7e-24	33.9
WP_069468319.1\|1340840_1341863_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-63	44.0
WP_069468320.1\|1341859_1343302_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.0e-51	33.7
WP_155760107.1\|1343286_1345509_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-147	41.3
WP_069468322.1\|1345505_1346180_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_069468323.1\|1346176_1346437_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_035186097.1\|1346429_1347155_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	2.1e-37	40.1
WP_069468324.1\|1347265_1348564_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.2

DBSCAN-SWA_9

1397719 : 1443029

Streptococcus_phage(21.43%)

transposase,bacteriocin,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064776983.1\|1397719_1397965_-\|holin	holin	A0A142F1N6	Bacillus_phage	2.0e-13	43.4
WP_064776982.1\|1397961_1398321_-	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	9.9e-09	44.4
WP_003592463.1\|1398451_1399381_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	2.3e-25	34.4
WP_069468340.1\|1399481_1401263_+	glycerophosphodiester phosphodiesterase	I6XE30	Staphylococcus_phage	9.9e-09	23.6
WP_039098169.1\|1401668_1403024_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_069468342.1\|1403183_1403612_+	hypothetical protein	NA	NA	NA	NA
WP_039098171.1\|1403659_1404280_+	endonuclease III	NA	NA	NA	NA
WP_069468343.1\|1404317_1405358_-	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	A0A1W6JHY1	Lactococcus_phage	4.7e-11	30.8
WP_069468344.1\|1405763_1406249_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_064776976.1\|1406381_1406669_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_039098174.1\|1406791_1407139_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_039098175.1\|1407244_1407535_-	hypothetical protein	NA	NA	NA	NA
WP_039098176.1\|1407688_1408318_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_004265904.1\|1408364_1408772_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_069468345.1\|1408933_1410565_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004265899.1\|1410917_1411244_-	hypothetical protein	NA	NA	NA	NA
WP_039098178.1\|1411310_1411916_-	response regulator transcription factor	NA	NA	NA	NA
WP_069468346.1\|1411912_1413037_-	sensor histidine kinase	NA	NA	NA	NA
WP_069468347.1\|1413033_1413780_-	ABC transporter permease	NA	NA	NA	NA
WP_004265896.1\|1413783_1414656_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.0e-18	30.4
WP_004265942.1\|1414798_1415440_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_069468348.1\|1415526_1416645_+	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	2.2e-14	30.7
WP_004265902.1\|1416679_1416847_-	hypothetical protein	NA	NA	NA	NA
WP_069468349.1\|1416920_1417163_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069468350.1\|1417217_1417784_+	hypothetical protein	NA	NA	NA	NA
WP_081326639.1\|1417749_1418691_-	nucleoside hydrolase	NA	NA	NA	NA
WP_064776966.1\|1418840_1419812_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004265909.1\|1424042_1424627_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.3e-52	53.9
WP_069468352.1\|1424748_1425267_+	DsbA family protein	NA	NA	NA	NA
WP_039098448.1\|1425371_1425827_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004265894.1\|1425917_1426862_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.1e-51	38.7
WP_069468353.1\|1426864_1427899_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.2e-94	54.8
WP_069468354.1\|1427895_1428780_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.9e-09	31.0
WP_004265944.1\|1428980_1429517_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_064776964.1\|1429671_1432524_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.6e-304	54.8
WP_004265948.1\|1432536_1434540_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_004265951.1\|1434956_1435589_-	HD domain-containing protein	NA	NA	NA	NA
WP_004265958.1\|1435701_1437426_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.9e-182	55.1
WP_039099207.1\|1437803_1438724_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.1e-83	51.1
WP_052202753.1\|1438811_1439168_-	hypothetical protein	NA	NA	NA	NA
WP_069468355.1\|1439333_1440362_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_004265937.1\|1440389_1441223_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_004265923.1\|1441589_1442531_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_004265953.1\|1442675_1443029_-\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_10

1476697 : 1564679

Lactobacillus_phage(27.27%)

integrase,head,tail,transposase,holin,tRNA,capsid,terminase,portal

attL 1487914:1487973|attR 1552778:1552853

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004270256.1\|1476697_1477207_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_039099473.1\|1477460_1478294_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_039099474.1\|1478505_1479462_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_069468361.1\|1479657_1480635_+	GMP reductase	G3MBI2	Bacillus_virus	1.6e-141	75.8
WP_035186296.1\|1480805_1481237_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_039099476.1\|1481283_1482429_-	AI-2E family transporter	NA	NA	NA	NA
WP_069468362.1\|1482446_1482836_-	PTS sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_069468363.1\|1482984_1484010_+	lactonase family protein	NA	NA	NA	NA
WP_064776947.1\|1484044_1485514_-	MFS transporter	NA	NA	NA	NA
WP_064776946.1\|1485611_1486811_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-148	69.1
WP_069468364.1\|1486992_1487703_+	hypothetical protein	NA	NA	NA	NA
1487914:1487973	attL	NA	NA	NA	NA
WP_069468365.1\|1493455_1493893_-	transcriptional repressor	NA	NA	NA	NA
WP_069468366.1\|1494030_1496088_-	LTA synthase family protein	W6LM83	Streptococcus_phage	4.5e-154	47.8
WP_069468367.1\|1496305_1496539_-	YkuJ family protein	NA	NA	NA	NA
WP_069468368.1\|1496610_1497489_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.0e-22	29.0
WP_004271175.1\|1497501_1498518_-	flippase-like domain-containing protein	NA	NA	NA	NA
WP_039099034.1\|1498598_1499801_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_004271174.1\|1500219_1500648_+	hypothetical protein	NA	NA	NA	NA
WP_064776942.1\|1501157_1501526_-	DUF1634 domain-containing protein	NA	NA	NA	NA
WP_004270729.1\|1501525_1502371_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_069468369.1\|1502395_1503904_-	DUF438 domain-containing protein	NA	NA	NA	NA
WP_069468370.1\|1503896_1504130_-	DUF1858 domain-containing protein	NA	NA	NA	NA
WP_069468371.1\|1504150_1504894_-	3-oxoacyl-ACP reductase	F2NZ40	Diadromus_pulchellus_ascovirus	6.8e-12	32.2
WP_039099039.1\|1504893_1505118_-	DUF2829 domain-containing protein	G3MBC9	Bacillus_virus	3.7e-06	34.4
WP_069468372.1\|1505269_1505638_-	DUF956 family protein	NA	NA	NA	NA
WP_004270733.1\|1505858_1506770_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_054644529.1\|1506787_1507594_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_039099045.1\|1507623_1508604_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_039099047.1\|1508939_1510217_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_069468373.1\|1510254_1510941_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_004270727.1\|1510959_1511901_-	dihydroorotate oxidase	A0A1V0SH91	Hokovirus	1.5e-64	45.5
WP_052202743.1\|1512384_1513200_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA
WP_052202744.1\|1513287_1514562_-	WxL domain-containing protein	NA	NA	NA	NA
WP_004270734.1\|1516126_1516495_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_069468375.1\|1516665_1517628_-	AEC family transporter	NA	NA	NA	NA
WP_076786344.1\|1517660_1519301_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_039099562.1\|1519422_1520322_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_069468377.1\|1521458_1522379_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	6.6e-49	37.9
WP_069468378.1\|1522984_1523194_+	hypothetical protein	R4IBK5	Listeria_phage	5.0e-05	45.9
WP_069468379.1\|1523215_1524142_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0Y4R9	Lactobacillus_phage	1.6e-31	44.5
WP_069468380.1\|1524128_1524512_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_081326612.1\|1524575_1524707_-	XkdX family protein	NA	NA	NA	NA
WP_069468381.1\|1524708_1525023_-	hypothetical protein	NA	NA	NA	NA
WP_069468382.1\|1525036_1525480_-	hypothetical protein	NA	NA	NA	NA
WP_069468383.1\|1525483_1525891_-	hypothetical protein	NA	NA	NA	NA
WP_155760110.1\|1525887_1526349_-	hypothetical protein	NA	NA	NA	NA
WP_155760124.1\|1526366_1527845_-\|tail	phage tail protein	A0A0M7RDS2	Lactobacillus_phage	5.6e-90	49.2
WP_069468386.1\|1527837_1528692_-\|tail	phage tail family protein	A0A0M7RF73	Lactobacillus_phage	1.4e-45	37.5
WP_069468387.1\|1528705_1532935_-	tape measure protein	A0A2I6QR39	Streptococcus_phage	1.5e-103	39.4
WP_172821859.1\|1532986_1533151_-	hypothetical protein	NA	NA	NA	NA
WP_069468388.1\|1533183_1533603_-	hypothetical protein	NA	NA	NA	NA
WP_069468389.1\|1533602_1534235_-\|tail	phage tail protein	O64291	Streptococcus_virus	7.2e-55	55.2
WP_069468390.1\|1534247_1534616_-	DUF806 family protein	Q38220	Leuconostoc_phage	1.2e-14	35.0
WP_069468391.1\|1534615_1535029_-	HK97 gp10 family phage protein	Q9MCK1	Streptococcus_virus	7.3e-32	55.8
WP_069468392.1\|1535028_1535382_-\|head	phage head closure protein	A0A286QPN9	Streptococcus_phage	1.2e-14	38.9
WP_069468393.1\|1535365_1535650_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_069468394.1\|1535713_1537396_-\|capsid	phage major capsid protein	A0A2P0ZLF9	Lactobacillus_phage	2.3e-79	40.6
WP_069468395.1\|1537395_1538484_-\|portal	phage portal protein	A0A0M9JJ63	Lactobacillus_phage	5.4e-74	44.0
WP_035147180.1\|1538483_1538675_-	hypothetical protein	NA	NA	NA	NA
WP_081326614.1\|1538762_1540607_-\|terminase	terminase large subunit	Q9AZM6	Lactococcus_phage	3.5e-150	46.4
WP_069468396.1\|1540596_1541142_-\|terminase	phage terminase small subunit P27 family	A0A0M7REI3	Lactobacillus_phage	5.5e-27	42.0
WP_069468397.1\|1541263_1541539_-	hypothetical protein	NA	NA	NA	NA
WP_069468398.1\|1541538_1542027_-	hypothetical protein	B8R694	Lactobacillus_phage	3.8e-27	46.9
WP_069468399.1\|1542023_1542836_-	hypothetical protein	NA	NA	NA	NA
WP_069468400.1\|1542840_1543068_-	hypothetical protein	NA	NA	NA	NA
WP_069468401.1\|1543301_1543619_-	hypothetical protein	NA	NA	NA	NA
WP_155760112.1\|1543620_1543797_-	hypothetical protein	NA	NA	NA	NA
WP_069468402.1\|1543798_1544581_-	hypothetical protein	I2E8X7	Clostridium_phage	6.0e-43	42.4
WP_035147163.1\|1544802_1545054_-	hypothetical protein	NA	NA	NA	NA
WP_035147161.1\|1545053_1545461_-	ORF6C domain-containing protein	S5MP04	Brevibacillus_phage	2.8e-07	32.5
WP_151388570.1\|1545450_1546329_-	hypothetical protein	A0A2P0VH66	Streptococcus_phage	6.6e-30	30.4
WP_035147158.1\|1546285_1546489_-	hypothetical protein	NA	NA	NA	NA
WP_052039273.1\|1546505_1546760_-	DUF771 domain-containing protein	Q9T0Y9	Lactobacillus_phage	2.8e-18	51.9
WP_035147148.1\|1547099_1547318_+	hypothetical protein	NA	NA	NA	NA
WP_035147145.1\|1547343_1547553_-	DUF2829 domain-containing protein	NA	NA	NA	NA
WP_155760113.1\|1547616_1547787_+	hypothetical protein	NA	NA	NA	NA
WP_069468403.1\|1547930_1548158_-	hypothetical protein	B5WZL3	Staphylococcus_phage	3.1e-08	41.3
WP_155760114.1\|1548310_1549021_+	helix-turn-helix domain-containing protein	D7RWL5	Brochothrix_phage	3.0e-41	45.8
WP_069468405.1\|1549020_1549584_+	hypothetical protein	NA	NA	NA	NA
WP_069468406.1\|1549797_1550334_+	PH domain-containing protein	Q4ZA70	Staphylococcus_virus	5.6e-32	42.2
WP_069468407.1\|1550485_1551592_+\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	4.5e-60	34.4
WP_056966316.1\|1559845_1560232_-	hypothetical protein	NA	NA	NA	NA
1552778:1552853	attR	NA	NA	NA	NA
WP_004270515.1\|1560228_1560609_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_069468408.1\|1560750_1561614_-	ROK family protein	NA	NA	NA	NA
WP_039099273.1\|1561637_1562222_-	peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	1.3e-26	42.8
WP_039099272.1\|1562365_1563352_+	NAD(P)/FAD-dependent oxidoreductase	Q9JRK7	Streptococcus_phage	3.1e-20	45.2
WP_069468409.1\|1563749_1564679_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	2.3e-25	34.4

DBSCAN-SWA_11

1691207 : 1763827

Bacillus_phage(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069468443.1\|1691207_1692980_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_080752751.1\|1693638_1694877_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_081303817.1\|1695055_1696264_-	LCP family protein	NA	NA	NA	NA
WP_069468444.1\|1696460_1698269_+	oligoendopeptidase F	NA	NA	NA	NA
WP_039098355.1\|1698309_1699086_-	metal ABC transporter permease	NA	NA	NA	NA
WP_004265149.1\|1699120_1699801_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.2e-15	28.5
WP_039098315.1\|1699797_1700685_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039098314.1\|1700958_1701537_-	hypothetical protein	NA	NA	NA	NA
WP_065825206.1\|1701642_1703184_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_081326618.1\|1703314_1704637_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.5e-17	25.7
WP_039098312.1\|1704641_1705847_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.3e-24	26.3
WP_004265073.1\|1705846_1706533_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.3e-37	37.4
WP_069468445.1\|1706706_1708188_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-95	40.8
WP_069468446.1\|1708437_1709235_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_069468447.1\|1709319_1710279_-	ABC transporter permease	NA	NA	NA	NA
WP_069468448.1\|1710278_1711358_-	ABC transporter permease	NA	NA	NA	NA
WP_064776878.1\|1711354_1712878_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-13	28.6
WP_064776877.1\|1712952_1713975_-	BMP family protein	A0A0A7DN02	Lactobacillus_phage	6.2e-56	40.5
WP_069468449.1\|1714149_1715091_+	nucleoside hydrolase	NA	NA	NA	NA
WP_069468450.1\|1715305_1717357_+	AAA family ATPase	NA	NA	NA	NA
WP_069468451.1\|1717408_1719202_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-53	29.0
WP_069468452.1\|1719205_1720918_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-34	25.1
WP_039098300.1\|1721059_1721728_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_039098299.1\|1722310_1722580_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_004270471.1\|1722972_1723506_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_064776872.1\|1723737_1725234_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.1e-05	22.1
WP_069468453.1\|1725308_1725776_+	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_064776870.1\|1726846_1727782_-	nucleoside hydrolase	NA	NA	NA	NA
WP_004270447.1\|1727890_1728205_+	membrane protein	NA	NA	NA	NA
WP_004270462.1\|1728408_1728972_-	elongation factor P	NA	NA	NA	NA
WP_069468454.1\|1729059_1729851_-	hypothetical protein	NA	NA	NA	NA
WP_069468455.1\|1730011_1731076_+	hypothetical protein	NA	NA	NA	NA
WP_064776867.1\|1731079_1731826_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_054644234.1\|1732064_1732499_-	universal stress protein	NA	NA	NA	NA
WP_065825195.1\|1732514_1734083_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_039098996.1\|1734262_1734835_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_064776865.1\|1734909_1735521_-	LysE family transporter	NA	NA	NA	NA
WP_069468456.1\|1735567_1736239_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_069468457.1\|1736499_1737420_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-48	37.6
WP_069468458.1\|1737587_1738790_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_069468273.1\|1738913_1739843_-\|transposase	IS30-like element ISLpl1 family transposase	H7BVY4	unidentified_phage	3.9e-25	30.1
WP_146955176.1\|1740832_1741255_+	hypothetical protein	NA	NA	NA	NA
WP_146955175.1\|1741308_1742377_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.4e-26	34.5
WP_064776861.1\|1743183_1743678_-	hypothetical protein	NA	NA	NA	NA
WP_107504430.1\|1744442_1744511_-	hypothetical protein	NA	NA	NA	NA
WP_172821869.1\|1747378_1747894_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_069468462.1\|1748377_1749238_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.3e-58	44.5
WP_039098944.1\|1749706_1751401_+	oleate hydratase	NA	NA	NA	NA
WP_069468463.1\|1751551_1751920_-	hypothetical protein	NA	NA	NA	NA
WP_069468464.1\|1752969_1755501_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.7e-62	25.5
WP_004271050.1\|1757225_1757972_-	SDR family oxidoreductase	A0A2P0VP75	Tetraselmis_virus	9.9e-11	28.2
WP_081326619.1\|1757973_1758156_-	maltose O-acetyltransferase	NA	NA	NA	NA
WP_069468466.1\|1758336_1759569_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_035186853.1\|1759660_1759978_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.6e-13	37.6
WP_056967097.1\|1760077_1760740_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_064776729.1\|1761299_1761563_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	2.7e-32	93.3
WP_064776728.1\|1761603_1762446_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-155	98.2
WP_069468468.1\|1762906_1763827_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	1.7e-49	37.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage