CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015217	Leptospira tipperaryensis strain GWTS#1 chromosome 1, complete sequence	5 crisprs	csa3,DinG,cas3,WYL,Cas9_archaeal	0	0	1	0
NZ_CP015218	Leptospira tipperaryensis strain GWTS#1 chromosome 2, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015217_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015217_1

519350-519440

Orphan

Consensus_repeat	Method
AGGTTGATTATCCAAGTACTTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015217_1

>merge|NZ_CP015217|1|519350-519440|CRISPRCasFinder
AGGTTGATTATCCAAGTACTTTTTTTGAATAAAAACTCATGCTCAACTCCCTACGGGTCGTTTCGCAGGTTGATTATCCAAGTACTTTTTT

>NZ_CP015217|1|1|519350-519440|CRISPRCasFinder
AGGTTGATTATCCAAGTACTTTTTT	TGAATAAAAACTCATGCTCAACTCCCTACGGGTCGTTTCGC
AGGTTGATTATCCAAGTACTTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015217.1\|WP_069606106.1\|528741_531054_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320687
NZ_CP015217.1\|WP_069609057.1\|531579_532053_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP015217.1\|WP_069606102.1\|525007_526189_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372604
NZ_CP015217.1\|WP_069606089.1\|510023_510848_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224582
NZ_CP015217.1\|WP_069606086.1\|508436_508919_-\|phosphohistidine-phosphatase-SixA	unknown	unknown	gnl\|CDD\|224973
NZ_CP015217.1\|WP_069606095.1\|518736_519330_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|319983
NZ_CP015217.1\|WP_069606097.1\|520393_521155_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|238847
NZ_CP015217.1\|WP_069606099.1\|521621_522806_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|185640
NZ_CP015217.1\|WP_069606091.1\|512457_513366_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|273252
NZ_CP015217.1\|WP_069606104.1\|527022_528183_-\|LptF/LptG-family-permease	unknown	unknown	gnl\|CDD\|367632
NZ_CP015217.1\|WP_069606101.1\|523500_524898_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NZ_CP015217.1\|WP_069606098.1\|521238_521541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606100.1\|522802_523498_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|366722
NZ_CP015217.1\|WP_069606085.1\|507494_508307_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225322
NZ_CP015217.1\|WP_069606088.1\|509116_510031_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP015217.1\|WP_069606090.1\|510940_512461_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP015217.1\|WP_069606093.1\|515934_516903_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP015217.1\|WP_069606103.1\|526289_526814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606092.1\|513328_515281_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP015217.1\|WP_069606094.1\|516899_518732_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015217.1\|WP_069606106.1\|528741_531054_-\|M48-family-metalloprotease	gnl\|CDD\|320687	cd07328, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi.	6.72388e-32
NZ_CP015217.1\|WP_069609057.1\|531579_532053_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	0.00757468
NZ_CP015217.1\|WP_069606102.1\|525007_526189_+\|hypothetical-protein	gnl\|CDD\|372604	pfam13435, Cytochrome_C554, Cytochrome c554 and c-prime. This family is a tetra-haem cytochrome involved in the oxidation of ammonia. It is found in both phototrophic and denitrifying bacteria.	2.92497e-05
NZ_CP015217.1\|WP_069606089.1\|510023_510848_+\|ABC-transporter-permease	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	0.00492116
NZ_CP015217.1\|WP_069606086.1\|508436_508919_-\|phosphohistidine-phosphatase-SixA	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.47524e-27
NZ_CP015217.1\|WP_069606095.1\|518736_519330_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|319983	cd16325, LolA, LolA, a periplasmic chaperone. This family contains periplasmic molecular chaperone LolA which binds to outer-membrane specific lipoproteins and transports them from inner membrane to outer membrane (OM) through LolB, a lipoprotein anchored to outer membranes. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts OM-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. Studies have shown that hydrophobic surface patches large enough to accommodate acyl chains of the OM lipoproteins and the structural flexibility of LolA are important factors for its role as a periplasmic chaperone.	3.83028e-11
NZ_CP015217.1\|WP_069606097.1\|520393_521155_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	1.08892e-88
NZ_CP015217.1\|WP_069606099.1\|521621_522806_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|185640	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.	1.93001e-172
NZ_CP015217.1\|WP_069606091.1\|512457_513366_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|273252	TIGR00755, Ribosomal_RNA_small_subunit_methyltransferase_A, ribosomal RNA small subunit methyltransferase A. In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification].	9.38433e-79
NZ_CP015217.1\|WP_069606104.1\|527022_528183_-\|LptF/LptG-family-permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	1.23587e-71
NZ_CP015217.1\|WP_069606101.1\|523500_524898_-\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	1.81889e-07
NZ_CP015217.1\|WP_069606100.1\|522802_523498_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|366722	pfam01596, Methyltransf_3, O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.	7.96271e-73
NZ_CP015217.1\|WP_069606085.1\|507494_508307_+\|hypothetical-protein	gnl\|CDD\|225322	COG2602, COG2602, Beta-lactamase class D [Defense mechanisms].	3.62012e-06
NZ_CP015217.1\|WP_069606088.1\|509116_510031_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.54684e-78
NZ_CP015217.1\|WP_069606090.1\|510940_512461_+\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	4.06052e-52
NZ_CP015217.1\|WP_069606093.1\|515934_516903_-\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	2.9435e-154
NZ_CP015217.1\|WP_069606092.1\|513328_515281_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	6.08533e-46

>NZ_CP015217.1|WP_069606095.1|518736_519330_-|outer-membrane-lipoprotein-carrier-protein-LolA
MAFLKIRRLLPGAAGLILVCGISVSGDPGRDRLNALLGRMGEISSLRASVTINNEISGTLSFKKPNYLHVKFSDGRVVSSNGRFLWFYSPARAIVGKQDLRGSTGGVFGLLGGYEEVTQIGGSIRLKSPTKTYEEIVVTMNPDNTPKSLRMKHRGTGEYTSISFSGVQTNVGLSASLFNFSAPSSAQIVENPLNEKE
>NZ_CP015217.1|WP_069606094.1|516899_518732_-|hypothetical-protein
MSLNSRTDAHKIFADLYRKQRSPEHQEQIDEVIQKSNDIFIRIDLMKKVDEDFEKKKQEDNKKTDEEDKSKRSSERASTSAKTAPKQSPQRKNDAAASAAGIGFLANLFGGNAAINKFAKDTGTIDVGFLGRKLQIAPGVQNLFKFLKEDQIIATIQALRFCEQQGWRYWKPLVYNVVLNFNKLLNSIISLDSLFIDQISPEIFLNRATKLELYYARHLSREDSKDIIMTQVPELIKKDEKLIPRMPQIMAGLTYGLNLENGRPRMTDAIRAFHIVATKRMISWEEIVQQLNVPPINETKFQGSSDIIKEVETTLIRLADDIQTRLNRKEELQNLRERYFRIDDKGRMNFDFLNQIVDDYFENHVPENMQSASIKSAFKGTPHKLMYLLLRDFQASYAPVLEGTVKIGSKNQSRDVIIMLPGLFKGDIEQINNLLRLLDAFNKKYPSFQYSFATYNEHTTSSAGVEDQITQNLLKLLGDAAGFMGKFAEKLNILVENHLLARQYETAGKLNDRVLVSKEKVIDEIKILHRFIPYYDSTVVSGNRLNGKTLDFVFLEMAKLLYNYAVIYKDKPTITKLTLHKKIDTELTALMKEYERLAGKEYETTRMEEA
>NZ_CP015217.1|WP_069606093.1|515934_516903_-|tryptophan--tRNA-ligase
MRILTGVQPSGKLHLGNFFSVIRKLKEYQDTTDLYCFVADLHSLTTFSSKDKQRENTYNAVCDFLALGIDPEKSTFWLQSSVPEVTELTWYLSHSITVNQLNLAHSYKDKVAKGFSPGGGLFFYPVLMAADILGFDSDRVPVGKDQKQHLEYARDIASNFNREVGNVFKIPEPEIDEATALVPGTDGQKMSKSYGNTINFFDSEKELKKSIMSIMTDSAGVDEAKDPDKSHIFAIHSLFLDTKGKEELRNKFLTPGTGYGDLKKQLLQDTLDYFAPYRKEREKIGADQSFVESALKKGKEKAQKTITEVLDRVRKELGMYRF
>NZ_CP015217.1|WP_069606092.1|513328_515281_-|ComEC/Rec2-family-competence-protein
MGKHIRNWQPCSSFSKFSFGTLIGICIQLIFPETSLLWIGILLSVFSGSLFFRKRFQISEYIIFGIFFLLLATTLCPERFQRETGNQTFSFSRKNLFGKTETFFQDRFRERILQHLGEANLEKNTNRIALGLIFGEAKQLSKDFKQKAKEGGILHLFAASGLHLGILMGVQFRLLNFFPILGYAAPRIVPLLTGFLYLSALGYPVSLTRAWIFAGILLVQGLFFRKLRPVDLLLCSAWILWIWDPPRFYSVSFCLSFGAVTGIFFFSYPIQVSLGFLSNENSILSFFKENLTVSFSAGLGTMPVLLFSFGAFSFGSILLNLLVVPLAGILLPILYLSLILHETGIRFLLESSWSVTEFLIQILFYLSNTLSKPLGFYKEMGDALWLGIAGWVILSFSVIFFAVFIEKNFLRNKESKDPFHNIQNKEYNYNPARRMFSKKSYSYFCILFFLGIFGIHFFLYKAPGQFPQQNRIVNNRFFFLLRNGDSLFFSGKCKYANKKIANAFRTSKRLYCDSLEGQFLKKIHVDDESCLTWAFLCAQESPKTELLYSGRDADLWNLVSRVSLKKSNPIREIPLPGDSKILFFHTKKDSLSQLAQKTKSGEGWILLETPFGSKDRAEVWNRNRKLLGLSESWMFLEKDELQRIPLSKSF
>NZ_CP015217.1|WP_069606091.1|512457_513366_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MSSREYPFRKVSEIRKFLESKSSAPLKRWGQNFLIDPNAIQIILSGLSSDLLPSIDRILEIGPGLGAISHGLLDFHKPVTLFEIDPVYATWLREYLPEFELREGDALGFLSEYENQKVYLFGNLPYYISSELTLSAVKNLKGLVGATFLVQKEFAKRISKEASSIQFYLSAYGNWKLKKNIKAGAFYPRPNVDSSILEYRAKPAFDDEFGFIALECLCRMAFWGKRKKLTSSFRDAPITSLPLEVHTSKNFLEESFRAECFKALENAKIDADKRPEELKPKDFHEAAKSLSKFVKVILEKNS
>NZ_CP015217.1|WP_069606090.1|510940_512461_+|HDOD-domain-containing-protein
MKIQWYHYEKEGYYLSVKNLNVPIESLNPLYLRITHLNRNIDKIISFLLDRYLQYLDITSLRECIFSILRETIMNAVKANQKRVIFQEAGLDITDPKQYIIGMEKFKSELISKKDLYTDLLEEKGLHVLITFGFNQNSFLLKVANNVGILPEEDQRVQERISKAHTYNDLSEVFENHGDESEGAGLGLAMSLLMLKNEGIEGDSYRIKSEDGVTSAYIKIPFGFKKRNINLQKTGDILSEVDTLPTFPDNINQIMSLINKPDSSIQSITELVGRDVSLSTNILKLANSASFSQRTRVENLDDAIKVIGLSELNNILLSLGTKKILEERYKEFEAIWERSSLSAFICRRLGERMEWKKQTVTVLVCAALLHDVGRVILLSLEPEISAKISDLLGNRSFPSPLTLEEAALGISHTTLGGMICEKWNFSDTIRVSAEMHHRPLLVKKEFQDAVFTIYLSDMIIDISQGLADYSLIQTSVLQHFGFKKEEEYLEFTKKVLKEYQDFNKKS
>NZ_CP015217.1|WP_069606089.1|510023_510848_+|ABC-transporter-permease
MSNLSWIQDQIPKVFSVAFLTLRETLRKRIVYFIFIISALFLFFNFSCDIQVGGEDQSGNPTFQIYIVFLFFAFWNTVLALFLPVSLLGEELENKTYLPILSRPVSSLTYLVGKSFGVFFLILANAVFLIGTYLVKQQLSGGAFSWDLLKACITMFPVFYFLIVFGFLLVLSFGKNAAFFGGLALLVFSTFLDLFIYEQAAASLVQTTDLKKQILEVIYWILPQEGTIFFFSSSLLAKSLSQVHYYGEYSLAQVGVWIFLSLGFGKVVLDRKEL
>NZ_CP015217.1|WP_069606088.1|509116_510031_+|ABC-transporter-ATP-binding-protein
MSEFAIEIDSIQKKYKEQNALKGISFRVPKGSVFGLLGPNGAGKTSLVRILMGFSKQTAGSFHLFGLPFSPVLRKRIGYLPEKVSIPGFLTGEEFLTFNGKLAGIRSSEIQKKSKALLEKTGIADAGSKKIAGYSKGMLQRLGLASALIGDPELLILDEPGSGLDPKGYIDFRETLVEENKTKGTTVLLNSHRLLEVEKVCHEIGILNLGTLAAIGPLESLKEGKNRILVKVESVSSELDSYIRKISSEQKITENQIEFLPTNEIDLRKIPAELVALGANILKYERITESLEEVFLRVTGGNHE
>NZ_CP015217.1|WP_069606086.1|508436_508919_-|phosphohistidine-phosphatase-SixA
MKIIIARHGEAEPNSPDGTDRSRPLTKKGIADVQKMARFFQVGFKVTKIYHSPYLRTTDTAKIYTDILHPEQETESLDYLEAGQDMSRVCPLIKGLSNSDTILIVGHSPDVSIFAEKLLGISGVGKSFLFSPGSALAVNVPREKFLDGQIIWFLCPDFLC
>NZ_CP015217.1|WP_069606085.1|507494_508307_+|hypothetical-protein
MRWSKILFLTLWSLVSAGEIHSKEITLFSHFIDSSPSITGEGILLKQNFTPASTFKYWIALFLIEKNLVYPSFQKVSSEKHIPHTPRALNLREAMLYSSNSFFLSFLEEDSKRYEEFQDFLIRIGFVTEVYKSPFLNRKNLYLSPSIQKSPEAQHNFFVSFLKDEGRSRGISSKTFQFWKESAYWSECDSQNSKVFGKTGSLGGAFWFLGFLEKKQSVWERWTKDLPKEYSVITVLQTGEGSSREGAIRSFYRTAGCENEIENVLKRISE
>NZ_CP015217.1|WP_069606097.1|520393_521155_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKIIVLVKQVPDTETSIKVGDKSINEAGIKWIISPYDEFAIEEGIRLREKHGGEVIAVSLGPDRVVEALRTAYAMGADRAVHVKVDNYVPFDTNNTAELIANFAKAENADVIIGGRQSIDTDSSQVVVQVAELLGIPHVAFAVSLEINGTAVKATKEVEGGTQTIETTTPVALTAQKGLNEPRYPSLKGIMTAKKKPVETKSAADLGSPASKIEVVGLEPPPPRIPGRKLEAADANAFAAQLVKALREEAKVI
>NZ_CP015217.1|WP_069606098.1|521238_521541_-|hypothetical-protein
MIYALILTILCGLFFFLSYKGEGTPKSLSSLRIGFQNALNSPFQKNSLFLLLSLCTWMLLPLFWGLAFFLKTDANVLIVIGFMVWTYYWLKYLFSTDEIA
>NZ_CP015217.1|WP_069606099.1|521621_522806_+|acyl-CoA-dehydrogenase-family-protein
MRALLEKPNDLYNPTENHLALRENVAKFAKENMDSQAKDNDEHETFNLPLFRRIGSELGLFGVTVPEEDGGMGMDAVAAVIIHEEMSAYDPGFMLSYLAHEVLFVNNFYHSSNPAQRAKYLSKVISGEWIGGMGMTEPGAGTDVLGLRTIATKKGDKYILNGSKQYITNGSTGSVFLIYAKLDKNSKKMTSFIVESSYPGFSVGKKEEKMGMRSSPTTQLIFEDCEVPAENLVGQEDGALVHMMRNLEIERITLAAQSLGIAKRCVDIMADYTIRHREAFGKKLAEFGQIQRLLAESYADFQAARALVYNVASQIHPENRNSLGAASAKLVATQMAERVSRNAIQALGGYGYCREYPVERLHRDSILLSIGGGTNEAMQKNIVADLKKIYEGTP
>NZ_CP015217.1|WP_069606100.1|522802_523498_+|class-I-SAM-dependent-methyltransferase
MSRKNIQLTEKLEEYIFQFSVNEPSSFQKLREETAKLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKLLCCDISEEWTKIAKRYWKESGLEKQIHLKIGSALETLQVISDSKTSPSWAPNFGYGPSSVDLVFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADDSHQEPSTIGIRKFNELVHKDPNVDISMIPIADGVSLVRKK
>NZ_CP015217.1|WP_069606101.1|523500_524898_-|SH3-domain-containing-protein
MHKNKFSSFVRLSIYIAFLLFLYSCASVPIGFGVVLQKDIKVYSKPTLKSEIAFSLDQSSPYDVLAADLPDKDSVSKLLWFKIRQKDKVGFISKEEEILKNNVLNFLPVTGDKFGLVTATQLLLRETPSTGGKILGRLATRNIVELIEEHTKKINIDGMQGTWAKIKTKDGKTGFVFTAYLMRGISPEVLAKTDTIELSQTGWALLTKTPSKVFNYTNGKLIPNSEVPYEFTKGAELYFTQKLITPQGKVYFYILGEKRPNYESDEEEQSRIVYSGYLPADNLKNYPTYSKLYFDNSLNSNRALLETIDKAFDGETDLSTVMETEHSFGKKKVYHVEVQSKSRYINDDFPYKRNLLILKEGKSYTNLQIGIGDIQFEDLDRDGIDEVMVTETSGRSGDISQALYRFNGSGFDSLLTFSGFNGECGHITYNSSNISLNSKNCSKESKEKIKTFEYVLKKGKLVPVR
>NZ_CP015217.1|WP_069606102.1|525007_526189_+|hypothetical-protein
MKFNLYVIFCFLMIGCFLVTYIDSESGKGNITLFEFLKFDKGVHPVSFHPDLDPIRDRNSGKLLDAAADCKPCHKAVYENWNRSRHRVAHTNEIYRSSFSQEPMQWCENCHSPLRSSLDQTPFKPEEGISCNVCHVREGKILAAENPKSSPKKYHEYIVIDSFGTEELCGSCHQFNFPTWTSLANRNSPFEYSNLNMQGTVSEWSHSGFANESNCIDCHLAPSTKNTHSFRGGHFLPDLKKSLELEAEYVGPRTIAVRIVSNGIGHSYPTGDLFRALRLKVYSESGKFREEFILRKLYRNATKEEKEKSYEPRVLESDTRIPPPFENKNSAYKEFFLEVPDRPRKLKLELWIDYLNDIEKIFSHLKRTETLKKISSEWIRIQGRENFTDKDAG
>NZ_CP015217.1|WP_069606103.1|526289_526814_-|hypothetical-protein
MEVPLTNLISSAEKLIRDKRSSVSGRTASAQEGQGSLDKTEFSSGLTSRYLKIQETLSSLQGEFSKEQMKLGILNEGSTPNSELINILFGETPLFRELSENPDMDQAVLKEQIQDKKNKLTDSIRNLEVESENIFSVGMLKGQENFSKSLEAITGKGVQMKQLSEKTIERLIKE
>NZ_CP015217.1|WP_069606104.1|527022_528183_-|LptF/LptG-family-permease
MSALPLKLDPIKSFFQYWKKEFFPLKILDKYLFGEFFKIFIGTVILLTGIMLLSLVNDNMRNFTTTKAPRFHVALFLLYSLPKIISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVTPLILFGIIMWVIMLLGTELIVRPVNKLAKIEHDTLTEGMGTLANSVYQFHVKGKEGFYYLYFYDPDKDEINGGFNYIRLRPDGSPETVISSLKAKYNYETRLWKMKRVEEWHFDNDLNLSSQESFDEKEYELPEDPTYFKVPAGSVEEMNLIQLGEEQKRRIQKGLPYGDVLTEKHSVFALPMMTIIVTLIGTIAGYFTKKTAGVASLGITIGVVLIYYIFNSAGKSLGENGVIPAFLGVWITPGMFLGLCFWMFRRMNL
>NZ_CP015217.1|WP_069606106.1|528741_531054_-|M48-family-metalloprotease
MDHLSPSYNPSELVGLNQAHKRNLWLTVIGLIFFVLVYLALSGWFAWASYSFILQGLTGTGAGLYSWIAGIGSGLISLFMIKALFFVKKGSLGDEYEITAKDQPQLFQFLYQLADETGAPRPHRVFLSPQVNACVFYDLSMLNFFFPSKKNLEIGLALVNVLSISELKAVLAHEFGHFAQKSMAVGNWVYIAQQIAAHLIARRDALDDFLRSVSRFDIRVAWIGWILRLVIWSLRAAMESFFNLVVLAQRALSREMEFQADLVAVSVTGSDALIHALHKLQAADEAWETTQGFIMDHIRMGKGAKDIFPIHSKIIDHSRKIWNNPHYGKVPELPSQNPENHRVFTSEIAQPPRMWATHPYNHERETNAKKRYVPRSLDDRSGWLIFDDAESLREKFTEKILSNFKTEFSHDPEILTAVDEFYKKEYLNSDYKGTYLGRSFVRYASSPKEFYNYKIDSPKEELDNLYPQSLSEQLEKLRSLEKEKNLLTGLQDGFYTPADGIIRFRGTELKKKELPSAIKSLEEDCKTIQALIFDHDKRCRSVHRKAAEEIGSGWPEYLEGLLEVLHYADHSRANIEDSRALLNNVYSVVTADRHVSSGELVRLVAAGNQVYEAISEVHKHKENIILDSELLKDLELKDWSSAFSKFEFTRATEANMQKWLEVVDSWIDEALGALFALKHASLERLLIAESKVAEKIRNPKSKLEPAPEPSKVVSEYPTLTPGKERKLQKRLDLWDRFQTADGFVPGLMRFAVATGILSGALYLTSFAVFR
>NZ_CP015217.1|WP_069609057.1|531579_532053_+|HEAT-repeat-domain-containing-protein
MKFRSLLILALVVSFTSGALLAEKSTDEHIKTLSSGSDSEKYESAVALGKGKEKSAIPELINLLNRNNEPKIATAAAIALGKIAESGDATIALKNKIISSENGDIVYASLASLLNITTKNEKLEDPTKEAFEFADKNRRGDEYVSDFLDLIKKKLKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP015217_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015217_2

1095147-1095301

Orphan

Consensus_repeat	Method
CGACAACGAGAAGAATTTGTTTTTTAGTGATTGATTCGCACTTATACGAAGTTCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP015217_2

>merge|NZ_CP015217|2|1095147-1095301|CRISPRCasFinder
CGACAACGAGAAGAATTTGTTTTTTAGTGATTGATTCGCACTTATACGAAGTTCGTCTAAACGCGGTCATTTTCGAGGAAGTCCGATCTTGTCGGAACTTCGACAACGAGAAGAATTTGTTTTTTAGTGATTGATTTGCACTTATACGAAGTTCG

>NZ_CP015217|2|2|1095147-1095301|CRISPRCasFinder
CGACAACGAGAAGAATTTGTTTTTTAGTGATTGATTCGCACTTATACGAAGTTCG	TCTAAACGCGGTCATTTTCGAGGAAGTCCGATCTTGTCGGAACTT
CGACAACGAGAAGAATTTGTTTTTTAGTGATTGATTTGCACTTATACGAAGTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015217.1\|WP_069606551.1\|1103906_1104233_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606545.1\|1097442_1097730_+\|Cys-rich-protein	unknown	unknown	gnl\|CDD\|275246
NZ_CP015217.1\|WP_069606544.1\|1096350_1097412_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|172940
NZ_CP015217.1\|WP_069606541.1\|1093592_1094351_+\|indole-3-glycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|140013
NZ_CP015217.1\|WP_069606547.1\|1100739_1101132_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606542.1\|1094628_1095018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606550.1\|1103289_1103718_+\|CHRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214804
NZ_CP015217.1\|WP_069609137.1\|1101229_1101748_+\|MepB-family-protein	unknown	unknown	gnl\|CDD\|378077
NZ_CP015217.1\|WP_069606538.1\|1090868_1091213_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP015217.1\|WP_069606540.1\|1093252_1093585_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP015217.1\|WP_162274093.1\|1101936_1102365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606546.1\|1097746_1099480_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP015217.1\|WP_069606539.1\|1091784_1093173_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|223842
NZ_CP015217.1\|WP_069606535.1\|1089347_1089608_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226769
NZ_CP015217.1\|WP_069606549.1\|1102465_1102981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606536.1\|1089929_1090355_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|368144
NZ_CP015217.1\|WP_069606537.1\|1090414_1090882_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176902
NZ_CP015217.1\|WP_069606533.1\|1086167_1088150_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP015217.1\|WP_069606534.1\|1088230_1088632_-\|DUF4345-domain-containing-protein	unknown	unknown	gnl\|CDD\|372978
NZ_CP015217.1\|WP_083244199.1\|1100064_1100466_+\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|227933

Protein	Function_ID	Function_description	E-value
NZ_CP015217.1\|WP_069606550.1\|1103289_1103718_+\|CHRD-domain-containing-protein	gnl\|CDD\|214804	smart00754, CHRD, A domain in the BMP inhibitor chordin and in microbial proteins.	5.392e-06
NZ_CP015217.1\|WP_069606544.1\|1096350_1097412_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|172940	PRK14465, PRK14465, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	0
NZ_CP015217.1\|WP_069606535.1\|1089347_1089608_-\|hypothetical-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	1.57025e-07
NZ_CP015217.1\|WP_069606537.1\|1090414_1090882_-\|SRPBCC-family-protein	gnl\|CDD\|176902	cd08893, SRPBCC_CalC_Aha1-like_GntR-HTH, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.	1.04061e-55
NZ_CP015217.1\|WP_069609137.1\|1101229_1101748_+\|MepB-family-protein	gnl\|CDD\|378077	pfam08877, MepB, MepB protein. MepB is a functionally uncharacterized protein in the mepRAB gene cluster of Staphylococcus aureus.	5.5319e-68
NZ_CP015217.1\|WP_069606538.1\|1090868_1091213_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	8.21386e-13
NZ_CP015217.1\|WP_069606540.1\|1093252_1093585_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.56458e-25
NZ_CP015217.1\|WP_069606546.1\|1097746_1099480_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	7.68638e-37
NZ_CP015217.1\|WP_069606539.1\|1091784_1093173_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|223842	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].	1.45274e-118
NZ_CP015217.1\|WP_069606545.1\|1097442_1097730_+\|Cys-rich-protein	gnl\|CDD\|275246	TIGR04453, Lepto_8Cys, Cys-rich protein, LA_1312 family. Members of this protein family occur, so far, exclusively in the genus Leptospira. Members, although small (about 90 amino acids), have a predicted signal peptide followed by a region with eight invariant Cys residues. Some members have an additional Cys in the signal peptide region that suggests handling as a lipoprotein, but this Cys is not well conserved.	7.67004e-25
NZ_CP015217.1\|WP_069606536.1\|1089929_1090355_-\|GFA-family-protein	gnl\|CDD\|368144	pfam04828, GFA, Glutathione-dependent formaldehyde-activating enzyme. The GFA enzyme catalyzes the first step in the detoxification of formaldehyde. This domain has a beta-tent fold.	5.8811e-23
NZ_CP015217.1\|WP_069606541.1\|1093592_1094351_+\|indole-3-glycerol-phosphate-synthase	gnl\|CDD\|140013	PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional.	7.09819e-155
NZ_CP015217.1\|WP_069606533.1\|1086167_1088150_+\|GAF-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.78869e-27
NZ_CP015217.1\|WP_069606534.1\|1088230_1088632_-\|DUF4345-domain-containing-protein	gnl\|CDD\|372978	pfam14248, DUF4345, Domain of unknown function (DUF4345). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 125 and 141 amino acids in length. There is a single completely conserved residue E that may be functionally important.	1.08189e-10
NZ_CP015217.1\|WP_083244199.1\|1100064_1100466_+\|DUF1801-domain-containing-protein	gnl\|CDD\|227933	COG5646, COG5646, Uncharacterized conserved protein [Function unknown].	5.79118e-22

>NZ_CP015217.1|WP_069606542.1|1094628_1095018_+|hypothetical-protein
MIRYGVFWFLLLIFAFLNATIRELTYKNLFGEFLSHQISVFTGILLLSIPIAGIAKYFPFSNAKQSIVIGIVWVVLTELFEYTMIVFWSKKPISEFFHAHDVFQGELWILFLIWIALAPFFFFKILNRS
>NZ_CP015217.1|WP_069606541.1|1093592_1094351_+|indole-3-glycerol-phosphate-synthase
MSSTQLHRVLREIIATKQNEIKVTPSFDPIPYKGLGLRESLRSRNFSIIAECKKKSPSAGEIRSEYDPVKIASTYEDCGASAISVLTDRDYFGGSLEDLKNVSSKVRIPVLRKDFILDEVQIREARAYGASAILLIVRILTPEQIKTFLKSASSLGMDSLVEVHTSEEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVSSFLPPNVIKVGESGVKNRSDLDNFRKLVDAALIGTYFMEKSDIHKAWLELF
>NZ_CP015217.1|WP_069606540.1|1093252_1093585_+|STAS-domain-containing-protein
MLDHKVRDGVLIVYLKGRLDVSIANEVEENLNDLIDNQGHKKVILNMQEVDYMSSSGFRACISTLRKLNSKEGALKISNIKPAVKRIFDVIELTSLFDIRETEEEALKSF
>NZ_CP015217.1|WP_069606539.1|1091784_1093173_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKFPESLKDQKTLVLGGGISGNSALDLLITLGADPILCDRNPPTSSRIAFLSDSTEPNSLPPISLIIKSPGILPTHPILLFAKEKGIPVFSEIDLGRHFFQGRIIGITGTDGKSTTTALTAHLLKKDFPDLREGGNLGIPFTSFCKEPISLAVLELSSYQLDDSSPLQLNASVFLNLAPDHLERHKTMENYFQAKLKIADLKNQNHSLIVSQKIKERILNTVEFQCKLLSFGRIPEADAFLDENSLKIRTAKFEYDLSLFHLPGTHNRENLAASILAAEAIGGKPESIQYQIPLFKGLPHRFQIAGEKNGFSFINDSKSTNLHSMLAGMSTWKKREHTCLILGGRPKQEDPKPLYDFLIQGIGCVILIGEGRPVWEEGIRKLIGAKLFAVETLEEAFTILKNGKTNSSPTQEETFQIHLENGIQISSVVFSPACASFDQYKNFEERGNHFLSLVESFLKEDR
>NZ_CP015217.1|WP_069606538.1|1090868_1091213_-|helix-turn-helix-transcriptional-regulator
MSKEMEAVDKVFKALADPSRRKVLDLLYANNGQPLSALCEQLNMQRQSATQHIDILINAILVTVVWKGREKLHFINPVPIYEVYERWVRKFEQNRLRFLHDLKTQLEGENDGKA
>NZ_CP015217.1|WP_069606537.1|1090414_1090882_-|SRPBCC-family-protein
MEKPSFVYVTYIVSTPEKVWGALIDPEITRQYWLDPLAKNPAHINVSNWETGSEWRHERLDDERTIDIVGKVVESNPPRRLVITWARPKEVEEESKHSRVTFDIEPYAEGLVRLVVTHEDLDPQMFAGISIGWPGVLSNLKTFLESGRALAKHIS
>NZ_CP015217.1|WP_069606536.1|1089929_1090355_-|GFA-family-protein
MNHPNPYSGGCACGSIRYNISDEPIFMNDCQCRDCQRMSGTGHGSYLTFPSRTTVTLTGEAAHFNMVGDSGSIKTSGFCSKCGSPVYMTFSGMPELFTVHAASLDDPNRFKSQVVTYAMRGYTWDHLDPSLPKFEKMPPTS
>NZ_CP015217.1|WP_069606535.1|1089347_1089608_-|hypothetical-protein
MDRQIHKEISKADKTINEKDYETLTSCYTHDAILMIKLETLAKGRDEVIEAYKKIADYFKDSLKVTQGKMLIYETDLLNFKSVKKD
>NZ_CP015217.1|WP_069606534.1|1088230_1088632_-|DUF4345-domain-containing-protein
MKSDSSLSMSERIVQICLFLVAFIAMFGGALQMYLGEPTTTPRLDNVHRFMAGVYFSTGLISGWTAWTIQKQNVLVYLLALGVFLAAVGRLVSISVVGLPEPAALWLGYLVPELVIPPIVVIAQRISDKNKGK
>NZ_CP015217.1|WP_069606533.1|1086167_1088150_+|GAF-domain-containing-protein
MSQKFPKYIITDSRSIAKRLIPVASRLEVQFLELKDFFESESIRDSIGFINVIFYLTIPTLKEHQRQIHKQFQSNPLILSRFILNDNLDYTESSDLKIEDDLIFAILPEISSDVILNKTILNAFTQIQMITDQFDLQHKVNTTKYEISKLTRIGISLADEKDFNKLLREIIFSAREISVADSGSLYLVEKDELGFIRNLRFKISSMDIDTEEFLLPINKSSIAGYVAATGKILNIPDVYDLPEDAEYTFNSNFDVLSNYHTKSMLVVPMKNHRNEVVGVIQLINKKRNFNQKLTVDQMKGKDILPFDDYSAQLVMSVAGQAAVAIQNNNLLQEIETLFEGFVTASVNAIESRDPTTSGHSFRVALLTVGLAEIVDQVGDGKYGHIKFSKEQIKEIRYASLLHDFGKVGVREKVLVKSKKLEDYELELIRWRFQYIKKDIESRILQKKADYLKKHGGAGFSDYETSLEFELQVEYQKLDQMFQIVIDSNEPSILEESNFQMLEEIAKVNYSTTAGESLNLISPYEFGFLTIKKGSLDFAERKEIESHVEHTFQFLSKIPWTGDLKMVPSIAHAHHEKLDGTGYPRGLAGDSIPVQSRIMTISDIFDALTDKDRPYKRAVSLERALDILHMEARDNHVDPDLLKIFVEGKVYERLSNSGYLR
>NZ_CP015217.1|WP_069606544.1|1096350_1097412_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MTQETLGEVQTGKIPLKGRTLKELSDIMSSLGEKPFRAKQIYHGLYVNRYESWEQFTTFSKALKEKLEELCSLTRLHVAKHLKSVDGTQKFTFSSEPNNGKEFEAVWIPSGDGGRKTICISSQVGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVERIVGDRATNVVFMGMGEPFHNYFNVIRAASILHDPDALNLGAKKITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRKEIMDIEEKFALPELIQAAKDFTRELNRRITFEYVMIPGVNMGQENANKLVKIARSMDCKINVIPLNTEFFGWRRPTRNEVEEFIALLEPAGVPILNRRSPGKDIFGACGMLASKS
>NZ_CP015217.1|WP_069606545.1|1097442_1097730_+|Cys-rich-protein
MNPRRILLFLLLTILPFVSCQEYVQQKCSSACKFFVQCAVTTFKDVKVTELEKNQAMIDCESGCIREQSFVLPCFESETTCKGFNTCVLESGFMD
>NZ_CP015217.1|WP_069606546.1|1097746_1099480_+|glycosyltransferase-family-39-protein
MNSITSDKPLISVRVLFVFLLFSILPLLFTLPLDVIDIDSSQYAEISREMVEGGNPFFIRDNGRRYLDKPILTFWKISLSFLVFGYQNFAFRLPALLFTFLSFWGIFKLTELYSGSRLRAWIAVFLYSLSPGLYSMVVDPKIDVYLTPYLILVHAFYYLGFKKNRNYYYLMYFAMGLGFITKGPIAMVIPALSIGGDILFRRDWKRLLEMKLFPGAFLAILPPVLWSIPLYLEFQTYGPYFFLWIQSFGRFYVKMYNQKFNPLFFYSNFSWAFGIFILPFAGFVIDRVSKFFKEGKSKGVFQNILKNEYKNLDFVLGFWLFLFLFLISFSRYQLPQYIYWCLPAAAVIGAGVLESILLSLKESKEVDFFLRIGVVLLLITAGAFLVTILILPVLSIQVGWSYLILPLIYLAVFIWVFIQTGREGRLLASWIFPVSLFFSVVSLYLYPMLTSYQPSKEIGTFIRENEAGKEKLFLFGVPASKRSYAYYSQRISRTLFDPAILVDAIQKDGQRYLIVQDKWVGKMDDFFGKDVQFETVKEYPSYKVATPEGKFFLKSQRDKVAGKVILMRATLKKSEKK
>NZ_CP015217.1|WP_083244199.1|1100064_1100466_+|DUF1801-domain-containing-protein
MKLLKVKFKQGKEAVRSTTNAKFKTVDQYIESFPKEIQKILNEMRNLVRKSAPMAEEKISYNMPAFAYNGNLVYFAAFKNHLGFYPTSSATKEFKKDLSPYKFSKGAIQFPLDKNLPKTLISKIVKFRVKENT
>NZ_CP015217.1|WP_069606547.1|1100739_1101132_+|hypothetical-protein
MLVQNQDVKKSIGRILLVLFSLIFVFHFLVLIQVIPYGIVWGGRLQNLQQMYAFELVSIVLNSFFLFVILMERGYIRRYFSNSILKWILWTMFALFSINTFGNLNSLDQMESILFAPITFLIAVFCFLLI
>NZ_CP015217.1|WP_069609137.1|1101229_1101748_+|MepB-family-protein
MIEKDLAPESFQEMKRKLLSPLGLEPTNLFVEKESAEYGACRFDLMDRKIVFRIAKITPTKAGQFVTLWKRKKGGPIEPYHIRDDIDYYMISANIQNRSGQFIFPKEVLNEKGILAGKKAGKRGFRVYPPWDVSLNKQAQGTQAWQLNYFMENDSAKPKDKKAFSDLLLLRK
>NZ_CP015217.1|WP_162274093.1|1101936_1102365_+|hypothetical-protein
MLQGFFHKTEILEEATKDGEKGYLILKPFSFVREPNPSLGWPSWYAMDAVLVNVGWIPLRGVNHKYKYLSYEDPIIRNPISIYGWIRNLSNANVYEKEGVVLRKPKTITELWKEIDEKTIASDSPPYGLHSLPIYLDLIEGL
>NZ_CP015217.1|WP_069606549.1|1102465_1102981_+|hypothetical-protein
MSKQKLLELLADLTCPMDPFVFAGFGSKYQEEYFAQELDVFDIEERYIETFLNSFDLDETVSDLFSIFITKPTDFYENLATRRAEDWDHSVNLMISKAAEKKPPMVSALIVRSIRQNPHLQKKFVEMIGYLDVKISYPITLDLESFWKDLDREQIEILDFIRSEFPNSSKP
>NZ_CP015217.1|WP_069606550.1|1103289_1103718_+|CHRD-domain-containing-protein
MKQKTFVLTLCILLFPALVFGKGATKYVASLKDSTQQNVNARGSVDAILDDETSKLKVSGSYEYFGTNATDILVQLEGVEAPLCTFKPPYNATNSPWKDWGSCDLNLDQKKALNAGKLYILIKTIGRPEGQVRGTIAPEAKK
>NZ_CP015217.1|WP_069606551.1|1103906_1104233_+|hypothetical-protein
MKYFYFVDSIAILLIGFYFNLEAQYIGFPSAAGGATELERAQRPLFYQYSYLCFCTGVALLIISFKTNGSRWRNYLRIGILFLFFVLSAIVYGIELKYVSTLRGGEGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP015217_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015217_3

1350599-1350720

Orphan

Consensus_repeat	Method
CGAAGTTCGTATAAACGCCAATAAAACTCAAACCTTCTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015217_3

>merge|NZ_CP015217|3|1350599-1350720|CRISPRCasFinder
CGAAGTTCGTATAAACGCCAATAAAACTCAAACCTTCTCGCAGTGGTATCTCCGACAGTTTTTCTCGCGATTGCAACTTTGCGAAGTTCGTATAAACGCCAATAAAACTCAAGCCTTCTCGC

>NZ_CP015217|3|3|1350599-1350720|CRISPRCasFinder
CGAAGTTCGTATAAACGCCAATAAAACTCAAACCTTCTCGC	AGTGGTATCTCCGACAGTTTTTCTCGCGATTGCAACTTTG
CGAAGTTCGTATAAACGCCAATAAAACTCAAGCCTTCTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015217.1\|WP_069606758.1\|1348958_1349231_-\|antitoxin	unknown	unknown	gnl\|CDD\|227620
NZ_CP015217.1\|WP_069606761.1\|1350969_1351563_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|334719
NZ_CP015217.1\|WP_069606762.1\|1352262_1352871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606766.1\|1356205_1357600_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP015217.1\|WP_069606764.1\|1354349_1355516_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606749.1\|1338550_1339027_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP015217.1\|WP_069606751.1\|1339491_1340058_+\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|223340
NZ_CP015217.1\|WP_069606760.1\|1350115_1350499_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319909
NZ_CP015217.1\|WP_069606753.1\|1341883_1342351_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606768.1\|1360417_1360771_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_CP015217.1\|WP_083244074.1\|1355715_1356204_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|184774
NZ_CP015217.1\|WP_069606763.1\|1352874_1354359_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
NZ_CP015217.1\|WP_069609165.1\|1361709_1361976_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP015217.1\|WP_069606756.1\|1347342_1348491_+\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP015217.1\|WP_069606748.1\|1336610_1338515_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP015217.1\|WP_069606767.1\|1357666_1360402_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP015217.1\|WP_069606754.1\|1342515_1343202_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606752.1\|1341350_1341875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606769.1\|1360727_1361657_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_CP015217.1\|WP_069606755.1\|1344655_1347181_-\|cAMP-binding-protein	unknown	unknown	gnl\|CDD\|365819

Protein	Function_ID	Function_description	E-value
NZ_CP015217.1\|WP_069606758.1\|1348958_1349231_-\|antitoxin	gnl\|CDD\|227620	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown].	5.80963e-10
NZ_CP015217.1\|WP_069606761.1\|1350969_1351563_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	2.08447e-14
NZ_CP015217.1\|WP_069606756.1\|1347342_1348491_+\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	2.52132e-126
NZ_CP015217.1\|WP_069609165.1\|1361709_1361976_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.02677e-43
NZ_CP015217.1\|WP_069606749.1\|1338550_1339027_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	8.09759e-10
NZ_CP015217.1\|WP_069606751.1\|1339491_1340058_+\|dihydrofolate-reductase-family-protein	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	6.92133e-13
NZ_CP015217.1\|WP_069606760.1\|1350115_1350499_-\|glyoxalase	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	8.73997e-26
NZ_CP015217.1\|WP_069606767.1\|1357666_1360402_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP015217.1\|WP_069606768.1\|1360417_1360771_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.36867e-21
NZ_CP015217.1\|WP_083244074.1\|1355715_1356204_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|184774	PRK14635, PRK14635, ribosome maturation factor RimP.	1.90177e-87
NZ_CP015217.1\|WP_069606763.1\|1352874_1354359_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.49251e-49
NZ_CP015217.1\|WP_069606766.1\|1356205_1357600_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	5.21556e-150
NZ_CP015217.1\|WP_069606748.1\|1336610_1338515_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP015217.1\|WP_069606769.1\|1360727_1361657_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	1.32134e-57
NZ_CP015217.1\|WP_069606755.1\|1344655_1347181_-\|cAMP-binding-protein	gnl\|CDD\|365819	pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.	5.50485e-06

>NZ_CP015217.1|WP_069606760.1|1350115_1350499_-|glyoxalase
MTFEILGLDHVQLAIPKGGEQIARAFYVNILSFTEVEKPPNLKVKGGAWFQCGVNQIHVGITDSFIPAQKAHPAIHVRNILEYRKYLESQGVLPRDEDPLPGALRFYLDDPFGNRLEFLEWLPIEEK
>NZ_CP015217.1|WP_069606758.1|1348958_1349231_-|antitoxin
MKYKLSQEEKSLESSIEKNEWKPVDNKAQYLKKFRSAAKNTLLKDKRMNIRIAGKDIQLLKTKALEIGIPYQTLVSSILHQYVTGKLKER
>NZ_CP015217.1|WP_069606756.1|1347342_1348491_+|DUF1343-domain-containing-protein
MNKIEKLLRVSRIGMITNQSAFGLDGEYHFQTIHKRYDLKKIFLPEHGLFAELQDQVSGSHLRYNLEGVEFINLYGDQESSLVPDSVSLEGLDLVIIDIRDTGARYYTFLTTAYYFLEEISKWNSQGKEEISVLVLDSPNPAGRRIEGTPLQEEYESFVGVRSVLHRHGLTPGELLTYYKKEFSLNLRMKVVKDGWYSKKDSEFLWIPPSPNIPFRSTCYVYSGQCLLEGTNLSEGRGTTKPFETFGAPYIREENERVRKELENFQKESFALRPLKFIPTFHKHKDEICGGYQILLKKPEKFHSLFFSLKLIRLLREEYPKEFAYRDGAYEFRSDLPAIELLVGDGFLLDYLNGEHSDLIVFEYLKEEEKAWKKKCKILLEF
>NZ_CP015217.1|WP_069606755.1|1344655_1347181_-|cAMP-binding-protein
MAFDSSVPQQQAQAPAGTLLFPEGSPANTLNVLHSGTVRYLTEIPGGRKLELFKLNGANLTPGSVALFTSGRYPFHLQAEEACVISTYAMNSQSIGKSIGSRVSLGMMVARTLLREVTELFKKANQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGTPIPEVSADVVDPVMRLCRENLKLFFDNGGLLPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVLQDPKILNALFTADPSMLTYVCVKLANVLEQITGILKTCLTDLDDSFRLFFVGENSLVEKFYLILDITSSGYGTAPAEYVIPVLGAVAGKIEKYKNGHQALFGVPVAGISPNAGTFQTKASSLAKKMEESAPKTAAPTSSAITAGVDVEAIRKELDNSASVIIQFSGLDAERIKEFSALMVKVKSLKNPLDPEGDIRKVRRTLGRHYWDMYQACYMKYMNSNRNVPKAVDLMLKYGFFDETMVDDSQIAFMYSHKDTMNFTSDIPISLGTEWLERVYKREIPTSLDEMGQNFFEKVKMENRTINIKKESDIPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILTDVIHDLMAIDYSVFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSVHRGAGSKESPGRIVVPIFSQGDLKTMISDALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQFFKKNKDLSIEIKEKLAGDFKRFRNDRDIFANDYQLWIKYESDGVQRLNKVVRSIFYRHIPFSRPIREKVAKTPAFGEIHNRFINIRNRKYTELENRYKKYLNALGSLPDPLRENLEFYRV
>NZ_CP015217.1|WP_069606754.1|1342515_1343202_+|hypothetical-protein
MEDTELEKRSRENVLKIGYCSLDEIEEKVKAFRVMNQNAAKKRYLITREPILDSNGKALLAKAAEIDISAAKLLRRQFKGNQMFKTFQPDEGIVIISDMTSAEGVSFTMDIVTQIMNLGGGAYEGFIDRVDSFGEFINLLKKSLFPKLIIIGYIPQSQVQAELLNFVRVKRVDNYLRAIELSHSLFKPQPYFPKIKQIEISQNDPKSWGRFVVEIIREYTRPYLLEDI
>NZ_CP015217.1|WP_069606753.1|1341883_1342351_-|hypothetical-protein
MHPETEKLSRFSFFLRIAKILPVLILLSTLFSCESVEFIPETVLREEFGYSHKSSWEEIEIRNSSPPKPYRTYGKILIRTFVNGKVPDYLITSLKKELFENHMDGVIFTGKGIVNVPPTLVQSGNGDGNTVAIGYVNNEMGVIEGVAYRYKEDRR
>NZ_CP015217.1|WP_069606752.1|1341350_1341875_-|hypothetical-protein
MIEKKQNSPRRFNSEIYVDSEDRWVFNGNRIIQKEVLTYFRKNLREDEFGIFIDNRFGELSENGYVELDGYPIHLTSCKESGSTLVFLSESEITFSLRELVFALDVDGCLFARTSKNQKLKFRPDRNCLSDLSPFLEETENGIEIRFQGERISIPESGESPRVSVPIEFSSPIS
>NZ_CP015217.1|WP_069606751.1|1339491_1340058_+|dihydrofolate-reductase-family-protein
MRKLIAAINMTIDGFCDHTLGIPDEEIHQHYADLLRSADIALYGRTTYQLMEYWRTVLDNPTGDKTKDDFAVAIDNTQKIVFSRTLKSVDWKSAKLANQDLEKEVLDLKLKSGKDILACSPSLIVSLTKLKLIDEYQLCVHPIIAGNGLPLFKDINEQITLKLIRTKTFSSGAILLYYQPILKLIMEH
>NZ_CP015217.1|WP_069606749.1|1338550_1339027_+|hypothetical-protein
MELENFTPSDFLEAAKYFYKTGDSDRAEYLFKLTLEEEDHHEAYFFLGLMENQKGNHERSLLHFYKSVEVNQNYGNPCNEIGIILLRAGKETEAVYWLKKSLRCDLNDAPHISLYNLATLYKIWNRPERSLQYLHRAIQIKPDFEEARKLKEELGSAI
>NZ_CP015217.1|WP_069606748.1|1336610_1338515_+|1-deoxy-D-xylulose-5-phosphate-synthase
MQQEPSLLDRINYPADLRSVPLEKLPVVCEEVRNYIIDTLSGVGGHFASNLGVVELTVALHYVFDTPKDRLVWDVGHQTYPHKILTGRKDRLNTVRKFNGLSGFPKREESPYDLYNTGHAGTSISQALGEAAARDLTGGDYNVVAIIGDASIATGMALEAMNHAGHLKKDMIVILNDNYMSISKNVGSISNYLNNIITSHFYNHWKRIFYTFLKWLPIIGPATERFFKKVEKGFKDVLTPGGLFEDLGFGYIGPEDGHDVIRLVRMLEKVKKMKGPILLHLITQKGKGYDPAERDPIKYHGVTPFRKEDGAMESGDSSKIAYSKIVGKMLTILTDQNPKIAAVTPAMIEGSGLKEYAEKYPEHLFDVGIAEQHSVAFAGAMTNGNVIPYMCIYSTFLTRGMDQLVEDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLSYLLGLPHMDVFVPSNGQDLIDSLRLMEHYDQEPIAIRFPKASVDIKSLDFYKKPELVPGTFRVLKKGSDVALLSIGSMLDEAKKAAEILESSGLSVTLIDLVWLRPLGAEALNEELSNVRHFAILDESYVDAGASGYLLNRIAPEQLSKYIKTFGFPPEPIHHGERKEIFQAYKLDGPSIAETVAEALKKNLIKP
>NZ_CP015217.1|WP_069606761.1|1350969_1351563_-|dihydrofolate-reductase-family-protein
MRKIIFLSFITLDGVMQAPGGPEEDTSGGFKYGGWTAPYFDEVSAKVIEKQMKPADYLLGRKTFEIWADYWPKHADFWPGINDGTKYVLSKTMKKSDWKNSVFLESLADIEKLKNSEGLDIQIWGSGKLIQLLLKNDLVDELWLKIFPLTLGSGNRLFGDGTIPAAFTLIESLVTPSGVIVANYKRAGEIRTGTVGV
>NZ_CP015217.1|WP_069606762.1|1352262_1352871_-|hypothetical-protein
MSGGYHSRSPEEFRKFLEESRKRASSGKFSRVKIVFVLNLVLIVLVIGMVVRTMTPGAFAVQSSSSKLKIGSALVYVKSSREGKEGVPTFFLFMKNESDSKELRFPEENLKFRISLSNQEGLNCLEKDWEVIERNLDPGKIEFARFQFDEKEFAALPLDCKIYSEGSFVERIFRKTATKNGLRLDLKISGKEGEKILTIQNL
>NZ_CP015217.1|WP_069606763.1|1352874_1354359_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MEIRFSEYSEPLFDDKESRDLDRKTILETGISGSHLMGFAALSIYQHYRKKILRSDSVFILCGNGNNGGDGLALAFFLIQEGKESKVFLKEGNLSEESTYYKNLLLRAGGKILNLESDPLFFEGENICIIDALLGTGFQPPIREPYGEVLEKIQKQKRKSPKRTFILSLDVLSGFSEELPTPFEADALAEIGMKKWRNRFLPNEIKKTFHRIGFPIKKKDDPNSESGTGKILWKKIPDSYLKECLKRKEDSHKYKNGSLLLIGGSQGMAGAALSSVLAFHELGGGISLLLSPSEKTVRAVLKKDPSLMIDRIEDSSEILSRPFVKKASVFLFGPGLKTEECPILEIPNDKFCILDAGALAAYKEKILHEKVLMTPHTGELEMLLNQKIKTVSEGISLAKDYAKSFRVQILWKRHSSFLIDPRGNLFFWEKPEPKLAVMGTGDLLAGILAFFLSRGFSIPESTQLSFSLLTNAAKRSKGFPTASGIRKLLQKGGI
>NZ_CP015217.1|WP_069606764.1|1354349_1355516_-|hypothetical-protein
MRNLNPISRIRSHHRRIFILSFGIVLIVAAIANCTRFKVDNYNSFLYGRIKLGNTLADVQAKILNGVPTNLPQTLSVVGGKIYVPDFEQSLLKVFSTDGELKFILGTLKEKVGDKYKLIPAKIGKIGLVAVNGDEEIYLQSRTGKEEQPKVDPATEDIFLKKSGSFDTEYREATPSAILHFSDAGKLLNTIYVEGSNGNTPFGYIERMETGEDDLLFVFHKSNGEMKLSVYDKGALLRSIGASNFADVISDSESTQVRLETLLPHLEGKYAVASFSIFDKKNSRFKSRKIFKYDFETKSATLIKEIQDPSESLYWILKDNNFFLWETETEEESSIRLQVHDDEGNHVNNIRLNYLPPRGLWRETWMDLNDEIYSARIKSGYLEIHKWK
>NZ_CP015217.1|WP_083244074.1|1355715_1356204_+|ribosome-maturation-factor-RimP
MTVSKEEIETILDGALHLPVKLYSLKVNQRPNHSLIEVVLDNLEHSYGSVSLLECEQVSRKLKEELERISPDLDYTLKVSSAGAERKLDLPGDLDRFRGIPVRLVFLSGESENPQEGIFRIMDRVEDQVILEKFQKGKKSAGKKQTTLNLKDILKGNLYVSI
>NZ_CP015217.1|WP_069606766.1|1356205_1357600_+|transcription-termination/antitermination-protein-NusA
MAVKKTQSEGNLLEAIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEGLEESEESDIPSPVTVEFASGKDSVVIAIAKKVVEGSPSSPLEIGLEEAKVIDESAEIGSVISFREKPVELSRIISSQAKQMVFQRLKDMEKELLYNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYHSGDRLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSIRTKVVVRATRGDIDPVGACVGMKGVRIQSIVRELGNERIDIVEASDDPSEFIANAISPAKPVEVKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVAQYNAELASPEARERLERLFYSPSEESKAQAEQEEEDEGLTPLEDLPGLSARIVGILKSEGIKDLETLIEYSQDDLAKLQGIGHTTAGQILKLLRESVEWVEDN
>NZ_CP015217.1|WP_069606767.1|1357666_1360402_+|translation-initiation-factor-IF-2
MEDKNKTIKETLQGAADAGKRKKLIIKKKGDESPSSPSASASPKKESTAESSAPSKPVTPLPPRGDSGQSPIVRQAPSSQRDVKSEEPPPRRQDSGPHGSPQRPPREPGGDSSYPPSPSPFQKEDSSIIVSRPIARPAPRPNTGGGGYQGNRGPGQGGGYQGGGGGYQGNRGPGQGGGGYQGGGTGYQGNRGPGQGGGGGYQGNRGPGQGGGTGYQGNRGPGQGGGPGYQGNRGPGQAPGPGNRFGGSGPGNRSGGPGGRPMPITSAEVELSQARGAAGASKKKGHDKEKSIGDKRDFSGAENTKFFKQRFKKSKVVGISGISVPKEITILENVQVGELAKKMNLKPGDVIGKLMKMGMMVTINNIIDAETAGLLADEYGCKVKVVSLYEETIIEEEKDSPEDYINRPPVVTIMGHVDHGKTKLLDTIRTSSVIDTESGGITQHIGAYQVRTARGLITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTLEAISHAKAAEVPIIVAINKIDLPTANPDKIMQELANHGLQTEEWGGQTMYAKISARENIGIDKLLEMILLQAEVMDLKSNPKRKAKGTIIEAKLDPGRGSVATVLIQNGTLRVGDPFVAGIFSGRVRAMYNDLGQSVEEAGPAFPAQVTGIDGVPDAGAPFDAMADEKEARNISQHRIEFERIGNAGAAAGSASKVTLENMNEFIKQGALKELKVIIKADVRGSAEAIKESLEKLSTPEVKLNVIQSGAGAIVDMDVMLASASNALIIGFHVRANPKTIALAEKEQVQIKYYNIIYQVVDEIKLAMEGLLEPEKIEEVIGTAEIREIFKVSKVGNIAGCMVTSGKIAKSANVRVISEGVIKFDGKLKSLKRVKDDVSDVVSGFECGIQVDGFNDFKSGDIIEAYNVTVIKRKLE
>NZ_CP015217.1|WP_069606768.1|1360417_1360771_+|30S-ribosome-binding-factor-RbfA
MNPIRRKKIEAEAVRTVAMMILSGKIKDPRVHMISVHRAEISEDGKNMRIFVTAICTPKKQIKVLAGLNSAAGVFQTTLSGKLSLRIAPRIQFLWDEEYIQSLDESLRLTRKPTNPD
>NZ_CP015217.1|WP_069606769.1|1360727_1361657_+|tRNA-pseudouridine(55)-synthase-TruB
MNHSDLPENLPIRTESGFLIIHKPEGMTSSDLVVVARKKLRLKKVGHTGTLDRAASGLMILPIGSCTSFSSVFLEKEKSYEAWVKPGESTDSGDKEGEILESLPKEQTAAWFQENQNLLKELFLEVPTWETQEAPDVSALKVNGRRRSDLFREGVALVPAIRKIRVYQYELGDFSAESIQFKIRVSAGTYIRKIVMDISDRAGFPLRLERLVRTSIGKIHLNQADSYENLLEGKVKIHPPEAILEFPTLEIPGTEVRNVLNGRKTKLEWIPPTEFLLVSPEGEILAWCKKEEHGIHELDYKYLRVFPKN
>NZ_CP015217.1|WP_069609165.1|1361709_1361976_+|30S-ribosomal-protein-S15
MIATEQKKTIISNFARKAGDTGSTEVQVALIDARIKELNEHFKSHKKDFHSKTGLLRLVSKRKKLLDYLKRTELDRYKKLIETLGLRK

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Crispr_ID: NZ_CP015217_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015217_4

1358194-1358280

Orphan

Consensus_repeat	Method
GGGCGGCGGCTACCAAGGTGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015217_4

>merge|NZ_CP015217|4|1358194-1358280|CRISPRCasFinder
CGGGGGCGGCTACCAAGGTGGCGGAACTGGTTACCAAGGAAATCGCGGACCTGGTCAAGGCGGGGGCGGTGGTTATCAAGGAAACCG

>NZ_CP015217|4|4|1358194-1358280|CRISPRCasFinder
CGGGGGCGGCTACCAAGGTGGCGG	AACTGGTTACCAAGGAAATCGCGGACCTGGTCAAGGCGG
GGGCGGTGGTTATCAAGGAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015217.1\|WP_069606758.1\|1348958_1349231_-\|antitoxin	unknown	unknown	gnl\|CDD\|227620
NZ_CP015217.1\|WP_069606761.1\|1350969_1351563_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|334719
NZ_CP015217.1\|WP_069606766.1\|1356205_1357600_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP015217.1\|WP_069609165.1\|1361709_1361976_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP015217.1\|WP_069606769.1\|1360727_1361657_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_CP015217.1\|WP_069606760.1\|1350115_1350499_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319909
NZ_CP015217.1\|WP_069606762.1\|1352262_1352871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606768.1\|1360417_1360771_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_CP015217.1\|WP_069606770.1\|1361987_1364084_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP015217.1\|WP_069606771.1\|1364100_1365387_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP015217.1\|WP_083244074.1\|1355715_1356204_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|184774
NZ_CP015217.1\|WP_069606774.1\|1366982_1367480_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606763.1\|1352874_1354359_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
NZ_CP015217.1\|WP_069606772.1\|1365996_1366434_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_CP015217.1\|WP_069606756.1\|1347342_1348491_+\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP015217.1\|WP_069606776.1\|1368409_1369423_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP015217.1\|WP_069606764.1\|1354349_1355516_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606775.1\|1367612_1368407_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP015217.1\|WP_069606755.1\|1344655_1347181_-\|cAMP-binding-protein	unknown	unknown	gnl\|CDD\|365819
NZ_CP015217.1\|WP_069606777.1\|1369551_1370139_+\|DUF1349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377771

Protein	Function_ID	Function_description	E-value
NZ_CP015217.1\|WP_069606758.1\|1348958_1349231_-\|antitoxin	gnl\|CDD\|227620	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown].	5.80963e-10
NZ_CP015217.1\|WP_069606761.1\|1350969_1351563_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	2.08447e-14
NZ_CP015217.1\|WP_069606766.1\|1356205_1357600_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	5.21556e-150
NZ_CP015217.1\|WP_069609165.1\|1361709_1361976_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.02677e-43
NZ_CP015217.1\|WP_069606769.1\|1360727_1361657_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	1.32134e-57
NZ_CP015217.1\|WP_069606760.1\|1350115_1350499_-\|glyoxalase	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	8.73997e-26
NZ_CP015217.1\|WP_069606768.1\|1360417_1360771_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.36867e-21
NZ_CP015217.1\|WP_069606770.1\|1361987_1364084_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP015217.1\|WP_069606771.1\|1364100_1365387_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	8.69061e-99
NZ_CP015217.1\|WP_083244074.1\|1355715_1356204_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|184774	PRK14635, PRK14635, ribosome maturation factor RimP.	1.90177e-87
NZ_CP015217.1\|WP_069606763.1\|1352874_1354359_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.49251e-49
NZ_CP015217.1\|WP_069606772.1\|1365996_1366434_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	2.71324e-66
NZ_CP015217.1\|WP_069606756.1\|1347342_1348491_+\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	2.52132e-126
NZ_CP015217.1\|WP_069606776.1\|1368409_1369423_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	3.61411e-159
NZ_CP015217.1\|WP_069606775.1\|1367612_1368407_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.16013e-62
NZ_CP015217.1\|WP_069606755.1\|1344655_1347181_-\|cAMP-binding-protein	gnl\|CDD\|365819	pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.	5.50485e-06
NZ_CP015217.1\|WP_069606777.1\|1369551_1370139_+\|DUF1349-domain-containing-protein	gnl\|CDD\|377771	pfam07081, DUF1349, Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.	2.45292e-76

>NZ_CP015217.1|WP_069606766.1|1356205_1357600_+|transcription-termination/antitermination-protein-NusA
MAVKKTQSEGNLLEAIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEGLEESEESDIPSPVTVEFASGKDSVVIAIAKKVVEGSPSSPLEIGLEEAKVIDESAEIGSVISFREKPVELSRIISSQAKQMVFQRLKDMEKELLYNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYHSGDRLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSIRTKVVVRATRGDIDPVGACVGMKGVRIQSIVRELGNERIDIVEASDDPSEFIANAISPAKPVEVKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVAQYNAELASPEARERLERLFYSPSEESKAQAEQEEEDEGLTPLEDLPGLSARIVGILKSEGIKDLETLIEYSQDDLAKLQGIGHTTAGQILKLLRESVEWVEDN
>NZ_CP015217.1|WP_083244074.1|1355715_1356204_+|ribosome-maturation-factor-RimP
MTVSKEEIETILDGALHLPVKLYSLKVNQRPNHSLIEVVLDNLEHSYGSVSLLECEQVSRKLKEELERISPDLDYTLKVSSAGAERKLDLPGDLDRFRGIPVRLVFLSGESENPQEGIFRIMDRVEDQVILEKFQKGKKSAGKKQTTLNLKDILKGNLYVSI
>NZ_CP015217.1|WP_069606764.1|1354349_1355516_-|hypothetical-protein
MRNLNPISRIRSHHRRIFILSFGIVLIVAAIANCTRFKVDNYNSFLYGRIKLGNTLADVQAKILNGVPTNLPQTLSVVGGKIYVPDFEQSLLKVFSTDGELKFILGTLKEKVGDKYKLIPAKIGKIGLVAVNGDEEIYLQSRTGKEEQPKVDPATEDIFLKKSGSFDTEYREATPSAILHFSDAGKLLNTIYVEGSNGNTPFGYIERMETGEDDLLFVFHKSNGEMKLSVYDKGALLRSIGASNFADVISDSESTQVRLETLLPHLEGKYAVASFSIFDKKNSRFKSRKIFKYDFETKSATLIKEIQDPSESLYWILKDNNFFLWETETEEESSIRLQVHDDEGNHVNNIRLNYLPPRGLWRETWMDLNDEIYSARIKSGYLEIHKWK
>NZ_CP015217.1|WP_069606763.1|1352874_1354359_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MEIRFSEYSEPLFDDKESRDLDRKTILETGISGSHLMGFAALSIYQHYRKKILRSDSVFILCGNGNNGGDGLALAFFLIQEGKESKVFLKEGNLSEESTYYKNLLLRAGGKILNLESDPLFFEGENICIIDALLGTGFQPPIREPYGEVLEKIQKQKRKSPKRTFILSLDVLSGFSEELPTPFEADALAEIGMKKWRNRFLPNEIKKTFHRIGFPIKKKDDPNSESGTGKILWKKIPDSYLKECLKRKEDSHKYKNGSLLLIGGSQGMAGAALSSVLAFHELGGGISLLLSPSEKTVRAVLKKDPSLMIDRIEDSSEILSRPFVKKASVFLFGPGLKTEECPILEIPNDKFCILDAGALAAYKEKILHEKVLMTPHTGELEMLLNQKIKTVSEGISLAKDYAKSFRVQILWKRHSSFLIDPRGNLFFWEKPEPKLAVMGTGDLLAGILAFFLSRGFSIPESTQLSFSLLTNAAKRSKGFPTASGIRKLLQKGGI
>NZ_CP015217.1|WP_069606762.1|1352262_1352871_-|hypothetical-protein
MSGGYHSRSPEEFRKFLEESRKRASSGKFSRVKIVFVLNLVLIVLVIGMVVRTMTPGAFAVQSSSSKLKIGSALVYVKSSREGKEGVPTFFLFMKNESDSKELRFPEENLKFRISLSNQEGLNCLEKDWEVIERNLDPGKIEFARFQFDEKEFAALPLDCKIYSEGSFVERIFRKTATKNGLRLDLKISGKEGEKILTIQNL
>NZ_CP015217.1|WP_069606761.1|1350969_1351563_-|dihydrofolate-reductase-family-protein
MRKIIFLSFITLDGVMQAPGGPEEDTSGGFKYGGWTAPYFDEVSAKVIEKQMKPADYLLGRKTFEIWADYWPKHADFWPGINDGTKYVLSKTMKKSDWKNSVFLESLADIEKLKNSEGLDIQIWGSGKLIQLLLKNDLVDELWLKIFPLTLGSGNRLFGDGTIPAAFTLIESLVTPSGVIVANYKRAGEIRTGTVGV
>NZ_CP015217.1|WP_069606760.1|1350115_1350499_-|glyoxalase
MTFEILGLDHVQLAIPKGGEQIARAFYVNILSFTEVEKPPNLKVKGGAWFQCGVNQIHVGITDSFIPAQKAHPAIHVRNILEYRKYLESQGVLPRDEDPLPGALRFYLDDPFGNRLEFLEWLPIEEK
>NZ_CP015217.1|WP_069606758.1|1348958_1349231_-|antitoxin
MKYKLSQEEKSLESSIEKNEWKPVDNKAQYLKKFRSAAKNTLLKDKRMNIRIAGKDIQLLKTKALEIGIPYQTLVSSILHQYVTGKLKER
>NZ_CP015217.1|WP_069606756.1|1347342_1348491_+|DUF1343-domain-containing-protein
MNKIEKLLRVSRIGMITNQSAFGLDGEYHFQTIHKRYDLKKIFLPEHGLFAELQDQVSGSHLRYNLEGVEFINLYGDQESSLVPDSVSLEGLDLVIIDIRDTGARYYTFLTTAYYFLEEISKWNSQGKEEISVLVLDSPNPAGRRIEGTPLQEEYESFVGVRSVLHRHGLTPGELLTYYKKEFSLNLRMKVVKDGWYSKKDSEFLWIPPSPNIPFRSTCYVYSGQCLLEGTNLSEGRGTTKPFETFGAPYIREENERVRKELENFQKESFALRPLKFIPTFHKHKDEICGGYQILLKKPEKFHSLFFSLKLIRLLREEYPKEFAYRDGAYEFRSDLPAIELLVGDGFLLDYLNGEHSDLIVFEYLKEEEKAWKKKCKILLEF
>NZ_CP015217.1|WP_069606755.1|1344655_1347181_-|cAMP-binding-protein
MAFDSSVPQQQAQAPAGTLLFPEGSPANTLNVLHSGTVRYLTEIPGGRKLELFKLNGANLTPGSVALFTSGRYPFHLQAEEACVISTYAMNSQSIGKSIGSRVSLGMMVARTLLREVTELFKKANQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGTPIPEVSADVVDPVMRLCRENLKLFFDNGGLLPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVLQDPKILNALFTADPSMLTYVCVKLANVLEQITGILKTCLTDLDDSFRLFFVGENSLVEKFYLILDITSSGYGTAPAEYVIPVLGAVAGKIEKYKNGHQALFGVPVAGISPNAGTFQTKASSLAKKMEESAPKTAAPTSSAITAGVDVEAIRKELDNSASVIIQFSGLDAERIKEFSALMVKVKSLKNPLDPEGDIRKVRRTLGRHYWDMYQACYMKYMNSNRNVPKAVDLMLKYGFFDETMVDDSQIAFMYSHKDTMNFTSDIPISLGTEWLERVYKREIPTSLDEMGQNFFEKVKMENRTINIKKESDIPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILTDVIHDLMAIDYSVFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSVHRGAGSKESPGRIVVPIFSQGDLKTMISDALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQFFKKNKDLSIEIKEKLAGDFKRFRNDRDIFANDYQLWIKYESDGVQRLNKVVRSIFYRHIPFSRPIREKVAKTPAFGEIHNRFINIRNRKYTELENRYKKYLNALGSLPDPLRENLEFYRV
>NZ_CP015217.1|WP_069606768.1|1360417_1360771_+|30S-ribosome-binding-factor-RbfA
MNPIRRKKIEAEAVRTVAMMILSGKIKDPRVHMISVHRAEISEDGKNMRIFVTAICTPKKQIKVLAGLNSAAGVFQTTLSGKLSLRIAPRIQFLWDEEYIQSLDESLRLTRKPTNPD
>NZ_CP015217.1|WP_069606769.1|1360727_1361657_+|tRNA-pseudouridine(55)-synthase-TruB
MNHSDLPENLPIRTESGFLIIHKPEGMTSSDLVVVARKKLRLKKVGHTGTLDRAASGLMILPIGSCTSFSSVFLEKEKSYEAWVKPGESTDSGDKEGEILESLPKEQTAAWFQENQNLLKELFLEVPTWETQEAPDVSALKVNGRRRSDLFREGVALVPAIRKIRVYQYELGDFSAESIQFKIRVSAGTYIRKIVMDISDRAGFPLRLERLVRTSIGKIHLNQADSYENLLEGKVKIHPPEAILEFPTLEIPGTEVRNVLNGRKTKLEWIPPTEFLLVSPEGEILAWCKKEEHGIHELDYKYLRVFPKN
>NZ_CP015217.1|WP_069609165.1|1361709_1361976_+|30S-ribosomal-protein-S15
MIATEQKKTIISNFARKAGDTGSTEVQVALIDARIKELNEHFKSHKKDFHSKTGLLRLVSKRKKLLDYLKRTELDRYKKLIETLGLRK
>NZ_CP015217.1|WP_069606770.1|1361987_1364084_+|polyribonucleotide-nucleotidyltransferase
MTHTISGQYGRDSIVLETGNWAKQAHGSVVYKSGNLVLLATVCAAEDAKEGQDFFPLTCEYTEKLYSVGRFPGGYFKREAKPPEHEVLTSRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDVTVAGHALNAASAALAVSDIPFNGPIGGARIGRIDGELVLNPTNKELLNSDLDLVVAGTKTHIVMIEGEAKELSNEEMLAALRFAQKHIAEFVALQEEFAKKIGVVKREVKLRKKDEELLTKVKDYAFEKLKAANQTSDKTSRNKEISNVNKEVVEFFKQTVEESEKIKDIKSYLHELEYEIVREQVLTQGTRFDGRKLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKPDEFPYVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSDTSGKFAVLSDIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFTQAQKGRFHILDIMEKHIAKAADHLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGANQESAERAAKMVDGFFTEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVNSVKDIVKEGDIIRVKVLNVDKTGKIDLSRKDALEEEQV
>NZ_CP015217.1|WP_069606771.1|1364100_1365387_+|insulinase-family-protein
MEQEPSQQVYRKVLPGGITVLFQKAPHTVSVSAGVFVRVGSRHESPKNAGYCHFLEHMLFKDTAKRTAKEQAEDIERVGGFTNAATSREYTYFHVTVAGKHLGLGLELLSEMIYEPLLKQSDIENEAGVILEELQGYEDSPEDYIHDFYYQNFFPKNPLGRDIIGTRESISNVSHKSLLEFYDTYYHTENMFLSVSGNFEPDEIFSIVGKHFNKPRNKKKEGNDLILPKKKWGYFPKKKKLEQVYFILGGEGFQREFHNASKASLFTHILGGGTSSRLFQKVREEKGLCYQITAYPSSYADVGINSIVCSTSKDKFITCMETISDELKSILDRGITEKELRDAQTNHEGTLSISYEQTESRMNTIALMELYYGRNYTYEERVKEIYSITLDDLNNFAKSVFGIPKLHLSALGNLGAKEEKAVQKLFSL
>NZ_CP015217.1|WP_069606772.1|1365996_1366434_+|dUTP-diphosphatase
MKISVKKLKPNAELPGLQTIHSAGYDVHACLDSNLILEPGKVFLVPTGLSFAIPPEYHFEIRPRSGFSTKNRILIPNSPGTIDSDYRGELMIPLLNLGDSPFVVEHGMRIAQLLIRKTWYAEWSLVEEFPDQTERGAGGFGSTGV
>NZ_CP015217.1|WP_069606774.1|1366982_1367480_+|hypothetical-protein
MKDKNQYLLDCYQAAFGTNMPVSLRDMILSGEFIKFSKKDFLHKESNQFFEVELIKDIGDRMGGLVDQSTRISIAEGLDRDEPIAFADLKPKSGGDDFIYNFVVFPAYDEEDPCAVYLLKHKGYPADEFEDEDEDGDEVSVESDLEFELQSVFDSFNELFLSLER
>NZ_CP015217.1|WP_069606775.1|1367612_1368407_+|SDR-family-oxidoreductase
METMLKGKTALVTGSTAGIGFAIAKQLLNEGANVFINGRTESRVDQAIAQLKDEIPNGNVKGLIADFGKKQEIDSILKELPEVDILINNVGIFEPKDFTEIPDEDWFRFLEINLLSGVRLSRFYLPKMLKKNWGRILFISSESGVQIPEEMIHYGVTKSAQISLARGLAELTKGTNVTVNSVLPGPTRSEGVGGFIENLAANQKVSTETVEKEFFKNARPSSLLQRFESVEEIANLVTYLSSSLSSGTNGAAVRVDGGVVKSAF
>NZ_CP015217.1|WP_069606776.1|1368409_1369423_+|LLM-class-flavin-dependent-oxidoreductase
MKLSVLDQSPIRKGGSARQAVLETIELAKLADELGYTRFWVSEHHNIQGLAGSTPEVLISHLAGITKNIRVGAGGVMLPNHSALKVAENFRMLETLFPGRIDLGLGRASGSDRLTASILNPGSQFVRNDFGQQLLDLQCYLTDRAEEDSIQMKVKAIPKADTVPELWILTSSGESGLLAAHFGLALSFAHFINPLGGPNAVRAYKDRFRPSESLAFPQASLGIFVLCAESEEKAEELRTVMDRQLLNIGKGISEGVLPYEEVIKSQYTEFEKAVILQNRGRMVAGTPDKVKEEILQLTKEYEVEEVVVTTITYDFEDRLRSYRLLANAFDLKPILSV
>NZ_CP015217.1|WP_069606777.1|1369551_1370139_+|DUF1349-domain-containing-protein
MFKDEEGLDSDYFWKNSPKFEIKNHRLFFKTSPDTDFWQKTHYGFRRDNGHCLLKNITADFSLSVRTEFYPKKQYDQCGLIVRIDSENWIKTSIEYETSDHSRLGSVVTNLGYSDWATLDIHSKINTMWYRIQNKENDFLLEYSENGMNWKQLRMAHLLLNSRPLAVGIYACSPMESSFECVFDHFELGDSEWPV

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Crispr_ID: NZ_CP015217_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015217_5

1387942-1388061

Orphan

Consensus_repeat	Method
TTCTTTTGGAAAACGGCGCAAATCCGAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015217_5

>merge|NZ_CP015217|5|1387942-1388061|CRISPRCasFinder
TTCTTTTGGAAAACGGCGCAAATCCGAATCAGCAAAATCGTAGCGGTTTTACTGCACTTATGAATGCAAGGACGGCGGAGCAGATAGGTCTTCTTTTGGAAAACGGCGCAAATCCGAATC

>NZ_CP015217|5|5|1387942-1388061|CRISPRCasFinder
TTCTTTTGGAAAACGGCGCAAATCCGAATC	AGCAAAATCGTAGCGGTTTTACTGCACTTATGAATGCAAGGACGGCGGAGCAGATAGGTC
TTCTTTTGGAAAACGGCGCAAATCCGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015217.1\|WP_069606799.1\|1397517_1398927_+\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|224978
NZ_CP015217.1\|WP_069606791.1\|1385005_1385608_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP015217.1\|WP_069606790.1\|1383737_1385024_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase	unknown	unknown	gnl\|CDD\|273015
NZ_CP015217.1\|WP_069606785.1\|1378685_1379696_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP015217.1\|WP_083244203.1\|1388431_1389397_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP015217.1\|WP_175578016.1\|1387428_1387587_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606800.1\|1398993_1399674_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NZ_CP015217.1\|WP_069606801.1\|1399691_1400462_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
NZ_CP015217.1\|WP_069606802.1\|1400538_1401246_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213226
NZ_CP015217.1\|WP_069606795.1\|1389521_1390166_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP015217.1\|WP_069606792.1\|1385711_1386917_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP015217.1\|WP_069606797.1\|1395630_1396296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015217.1\|WP_069606798.1\|1396301_1397420_-\|DUF2236-domain-containing-protein	unknown	unknown	gnl\|CDD\|378343
NZ_CP015217.1\|WP_173662785.1\|1379755_1380079_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903
NZ_CP015217.1\|WP_069606789.1\|1382799_1383738_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP015217.1\|WP_069606796.1\|1390335_1395627_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|226415
NZ_CP015217.1\|WP_069606788.1\|1380868_1382797_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP015217.1\|WP_069606803.1\|1401437_1402508_-\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NZ_CP015217.1\|WP_069606784.1\|1377964_1378711_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP015217.1\|WP_069606787.1\|1380075_1380858_+\|SRP-less-Sec-system-protein	unknown	unknown	gnl\|CDD\|275213

Protein	Function_ID	Function_description	E-value
NZ_CP015217.1\|WP_069606799.1\|1397517_1398927_+\|outer-membrane-protein-transport-protein	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	1.68259e-13
NZ_CP015217.1\|WP_069606791.1\|1385005_1385608_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	6.93105e-91
NZ_CP015217.1\|WP_069606790.1\|1383737_1385024_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.41615e-43
NZ_CP015217.1\|WP_069606785.1\|1378685_1379696_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	1.36482e-153
NZ_CP015217.1\|WP_083244203.1\|1388431_1389397_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.17944e-11
NZ_CP015217.1\|WP_069606803.1\|1401437_1402508_-\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.39932e-163
NZ_CP015217.1\|WP_069606800.1\|1398993_1399674_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	3.70241e-84
NZ_CP015217.1\|WP_069606801.1\|1399691_1400462_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.62486e-80
NZ_CP015217.1\|WP_069606802.1\|1400538_1401246_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213226	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	4.26229e-74
NZ_CP015217.1\|WP_069606795.1\|1389521_1390166_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	1.24079e-120
NZ_CP015217.1\|WP_069606792.1\|1385711_1386917_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP015217.1\|WP_069606798.1\|1396301_1397420_-\|DUF2236-domain-containing-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	2.32381e-21
NZ_CP015217.1\|WP_173662785.1\|1379755_1380079_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	1.58287e-25
NZ_CP015217.1\|WP_069606789.1\|1382799_1383738_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	6.76538e-91
NZ_CP015217.1\|WP_069606796.1\|1390335_1395627_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	1.64764e-67
NZ_CP015217.1\|WP_069606788.1\|1380868_1382797_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	8.9534e-140
NZ_CP015217.1\|WP_069606784.1\|1377964_1378711_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	3.03591e-34
NZ_CP015217.1\|WP_069606787.1\|1380075_1380858_+\|SRP-less-Sec-system-protein	gnl\|CDD\|275213	TIGR04420, Sec_Non_Glob, Sec region non-globular protein. Members of this family occur only in the genus Leptospira, always encoded between genes for the YajC and SecD components of the Sec preprotein translocase. Sequences have an N-terminal signal peptide and a C-terminal transmembrane segment. Between these are regions of non-globular, low-complexity sequence including Lys-rich and Ser/Thr/Asn/Glu-rich regions.	7.02036e-63

>NZ_CP015217.1|WP_175578016.1|1387428_1387587_-|hypothetical-protein
MSEYKNALVGILNAFLQLSYYLLWILPFAAIAAVLVYYGSVLVQNLRKKLGK
>NZ_CP015217.1|WP_069606792.1|1385711_1386917_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MIKPIENAIEEIKSGRMIILVDSEDRENEGDLVVAAEFADKEKINFMATYGRGLICMPMEGERLKKLGLNRMVDDYSLGDKHGTAFTVSVDAKHGTSTGISAQDRAITVQALLDEKTVSADLMRPGHLFPLQAVPGGVLRRAGHTEAAVDLSKLSDLYPAGVICEIMNDDGTMARLPDLEKFAEKHGLNIYTIEDLIRYRRAKENLIRLEVESKLPTEYGEFTIRAYSTLIDDKIHVALIKGEIKKEETAMVRVHSECLTGDIFSSNRCDCGPQLHAALEMIAKEGQGVLLYMRQEGRGIGLINKLKAYNIQDKGYDTVEANEKLGFAPDLRDYGIGAQILRDIGIGKMKILTNNPRKIVGLEGYGLEVVERIPIEIQPGSDNHGYLMTKKLKLGHILGLG
>NZ_CP015217.1|WP_069606791.1|1385005_1385608_+|riboflavin-synthase
MFTGLVETTGKILEIKDTSDGRDFLVETTWIQPDLKLGDSISVNGCCQTVTEFADQGSRFRFYSSFKTLELTNFGKLEIGEEVNLERSALPTTRLGGHLVSGHIDGTGNILSKEEREGGSVVCYTIQTDSSFSKYIAPRGSITVDGISLTVVDSRPEEFDLILIPETLKKTNAKSWKPGTILNLEIDLVARYLEQLLKYK
>NZ_CP015217.1|WP_069606790.1|1383737_1385024_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase
MSLLPESFREELRKLAFLSTGESSPNPPVSCLITNVENTKIFAQGRTSPTGGPHAERNAYSEFLKNGYSDTPHNVWVTLEPCSHYGKTPPCLDLILEYRPKTLYYGWKDPNPLVQTKDGLEECLRQGIKVVQDRTLEEIAKESLFGFASRLETQTPSMIFKTAVSKEGFYASSDKRRTQLSGKLTSYYTSLLRAKCDAVLVGPGTLFYDIPGLDFRFPKMETWEPRKNLTKEFSKTEGILLQEFRENFFGAPALLKNILKLGMDSDIQRIHGVFENAYQPYRVFILFEEKNVTAEFLEKQRAINERLGSQKCVFLVKKDTILKEETKEELRSLSEKELFFVDTMMLAEETLKILSEIGVNILLVEGGNLLYEKFQSKMKADDVILKIQTPTSIQEGIKPKLRMNDSTLLWKSKLEEDIWEVHTCLRDL
>NZ_CP015217.1|WP_069606789.1|1382799_1383738_+|protein-translocase-subunit-SecF
MFDFIKYKYVSIGASLALILFGFGYTFVVHGGFANSLDFNGGLRTVIEFDKNVDRKKLETYFADNKIETVLLLLDKEKNHFQIDIGLGSVDAILQKYKEKNVVKSEDKADISAIDALISILIADFGINKSQVLSANQVGAVVGGELSSTGVTLLGLTMVIILAYISFRFQFKFALGAIVALTHDLVLTIAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENAAGNLNETFGQTINSSINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIIIGTYSSIFIAAPLVDIYDHLARRIRA
>NZ_CP015217.1|WP_069606788.1|1380868_1382797_+|protein-translocase-subunit-SecD
MKSATWIFLPLAIILAATIVLYPNFAQRELELAVRKEFASIPEEQKKEILSKFEKRWNAEYKQSDWVISPSPSDLKDESFLLVKGRFVTSAKINQISQENPELILEAKNKLRPTLVEEWIAKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKEIENLKKTVADPSNDEKEKKKAKDRLEEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGVTNSSQILEIIQNTETVEYRLEEPENSAGNGTTYAAIIQQEENKLLEAGKREETDIVKYQNLVKQKLGKAEQDRFLQALEEKYKIPKEKYRIFAYWKRGNSQNSPQLPRNFIVLEKAIALDGRDMRDARPAFENNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRGAIAGGMAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGIKAVGIGFILVMLYMLLIYRLSGIVANIALFANIIILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELMAGKSASVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIVTSLFTSLFLSRLIMDLLVNKLGVQKLQIGFKKLES
>NZ_CP015217.1|WP_069606787.1|1380075_1380858_+|SRP-less-Sec-system-protein
MKKAAVSILLFLFLGNTVLFSQDGEEIDFLEKVAEPKKTASKKSSSSTSSSTKSSKKKEKKKSKKKKSKKSSTSPQNPENTKKNVEPSTNAEDPSKSGNNSQNNGSNSNSVNSSNTNSQTKDPSTRSVEEEQQLASASKVDTSDLQKPYWVNEEVKIKPNGLPGITVVAEPEKVEPGPSFQSRLSDILKLGEDKKKEEEKKKVQEGQKSGSFTGFISDYKKPIIIVVFILLFALYRLKAGKSRGSSGRRSPVTINKMRRD
>NZ_CP015217.1|WP_173662785.1|1379755_1380079_+|preprotein-translocase-subunit-YajC
MNSIILLQLAQAAGDGDKSPFSTLLLIPIMLVIMYFLVIRPQRSEEKKRKEMIGSLKKGDEVITSSGIHGKVVEIKDNDEVVVLNIAKDTNVSFTASTVVKKKQADK
>NZ_CP015217.1|WP_069606785.1|1378685_1379696_+|anthranilate-phosphoribosyltransferase
MEPRAAILKLIDRKHLTSEEAETFLNHVMKGEVSEILLSAFLSAMRANGESVDEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAITLASLGIKVAKHGNRSVSSHTGSSDILTRLGYKTEKTQEEVEQHLISQGFTFLFAPMWHPSMKYAGPVRKELGFRTVFNMIGPLSNPFSPQYQIIGVYEPELMELFIKVLQALGLKRAMVCHSRDGLDEFSIFSITDYSFLENGVISRHSFDPSILKLPTLKKEEVYASSSDHAEALARRVLNGEEIAGSYAVALNAGAGLFVMGKAPSIEEGSKIALEAILSGKTKKYFEDLISKG
>NZ_CP015217.1|WP_069606784.1|1377964_1378711_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNKVIFNIPNILTMLRVAAVPFFVWFLFQKEWEYHIAALILFVVASLTDLIDGYLARKWNQETEFGKFLDPLADKIIVTGCFVTFIFLQEQIEFWMVCMIIGRDMLITCLRYLAIRQGQSIRTTMLGKVKTVFQMGAIVLILVFFILVSSKKRILINEAYASGKASGLTVFEIATGNAIYFFQNLNKNTTLGDIIFGLGAFVPYWGMLITTAITVFSGLRYMVSNSQVLYPSNIKRMFQKRGTKSSNS
>NZ_CP015217.1|WP_083244203.1|1388431_1389397_-|DUF4349-domain-containing-protein
MLKNSKVYRIRRNTLKQSILFLLALCLVVLVACGKKKDSNAEGATGEAEKTAMRTAEVSTQLGSPMPPSDDSKKVASEKEESGFKDSFDKADNQLGKVFAPVPISTERLLEYNIQLSYECNDLVKTRKELLDYIAKYGYLESSSAVNSRTPYMSVRMHVRSAKLYEALLELDKLGVLISEDISTTDHTEGMVWQKRKTTREKIRLSRRNNANQQIGAGSKNWEVIEESIERSEDELDLAEQETWKIKDRVSWATIAVSFGTPTPPDAIQVPEYKNALVGILNAFLQLSYYLLWWTPFLILGSFLVYFGGIVYQKFRNKIKG
>NZ_CP015217.1|WP_069606795.1|1389521_1390166_-|pyridoxamine-5'-phosphate-oxidase
MTSKIADIRNSYTLSSLDIADTGDDPIQFFQKWFQEAVLSEVFEVNAMTLATASKDGKPDARTVLLKGISEDSFLFFTNYESRKGKELEENPRACLVFFWSELERQIRIEGSVTKVSKEESEEYFHSRPRESQIGAHSSPQSQVIPDRKFLEERFQKFSVQFEGKEVELPSHWGGYAVKPDRIEFWQGRSSRLHDRIVFEKNSDSSWKKFRVAP
>NZ_CP015217.1|WP_069606796.1|1390335_1395627_-|SpoIIE-family-protein-phosphatase
MSFRTETKSSSFRIREILLEDHVSTVCRGVLEEESETKILRIQRDKIKEEDSFYFLNEYEIGKLVENDQILKPQRLLRIQDKYCLVYENIESSLLGDHLNKVDSLPIQEFLQIAISVTDNLIALHSKGILHNQISPNSFFYNSDTGKSTLAWLGSSSLLIGEKGNLAPLQISPTLLAYCSPERTGRMNRTVDFRSDGYSLGALFYQILTGKPPFESNDPLEIIHSHIARVPVPVHERKKEVPIPISNLVMKLLSKMPEERYFALETLSNDLKILYDSIRSSQSILEFIPASTEKKDKFRITEKLYGRDGEKKIIEDSIASIYAGVRASILIKGKSGTGKTSLVMDSVFSTDFNALRIFKGKFDEDKKEIPYYALRQILVELSNHLLTQSEYEIQSLRRGMRETLGENIQLLVQLIPEIRSLIGISPEPTESPSQKDDQFLFIVILRFLSICFNRRSPALLVLDDIQWADPASIALIEFISRQTDWEGMLFVFICRNEEENSDFLNQFRNKLLSSEILLQEISLKPLDRTMIQNFVSDSLDLKPEDTEKLTDILYQKTNGNPFFLNQFFNTLYTESFIQYQKSSGIWSLDWDQIIKKTVTENVLDLLTEEIKRLPEETLRFLKVAACIGGLFDLGTLFRYFQDSPEIIETGIRECIKRGIIIFQESQVSLYPILQILKNETERDINQNSIFDGITFRFSHDKINQVISESIGAEDRAEIHKSLGWILIRTDRSSPKQERIPEIANHLIRAQKILNSKEEIDLFIHYTLLAGNAAKLSAAFNTAYSLFTLLKRKITEESWIERKEQTVQIYKSLAESAYFLSKTSEAENVVQVLLDHLNDPIEIADVRLMQLEVMNIKNDLEGAYKVGIKALQSMGEDFPERPGVFILLFEFLKTIFYQRGRSPESLEKAKRNQDPYKIEVINILTNMLNYGKHFDSKLFVFLFLKLMNITLKEGNSQVSFFGYAGFGSLVFAITGNFQTSLRYWKLGEHTLSIFNSDRLRGRFLFGKNMLLDYFQNPFSKLVLLAEEAYQKNIQYGDYLWAAFSIISHSIYQLYHSENSESYREVLIKDAKRAENLNYEITYAILASSDYFIKSLEGPAKPNVAYKDQEVSLETFENKILIPCGNGTAFAWYAVLRGKETYLHGEWEEGLNTFARFKEDLERSRTIFLYSEYRFYKSLHLIRFAQSGSKLSWLDRFFIRGSISLFKTWSKVYPINFLTHYYILKAEYSNFIRDLKTAESCFEKALSSLSKTETNLRKAIVNEHAGSWEVSRGRKQYGNYLLKLAQKQYRSWGASRKADLIQANREHLEDEPGFLLHTREEALLDTILKSADNLDLRSVLKSSQSISGIIEQDELLKKMMRTIMENAGATRGFLILPRQNGLYVETGQDIEESENVLPESLLLDEAGELLPVELVYYSYRSGQRILLGNASKESLYSLNSYIATHQPKSLLCLPITKQGKILSILYLENRLTYGVFDEHRLEILEILSSQAAISLENAKLYDDITRLNFELEKKVESRTQELMQSLKIIQKDLLYSKKIQRSILPEHPVLAGILYSVSYQPMDEVGGDFYDLFEFKPGVYRFFVADATGHGVQAALITMAIKSEYEHLKKVHKSPADLLKELNFVILEKFKTLYLTCIVADINVKNHTLEYSSAGHPAQILLRERNAEWMHKTGAILGLKKDYEYYSEKIKIRTGDRIFLFTDGIYEQFNSSKSEYGEARFLESIRTSDLSTTESQLVRIQKDLNEFLQGSPIQDDLTLIIIEVL
>NZ_CP015217.1|WP_069606797.1|1395630_1396296_-|hypothetical-protein
MEFWQKILTDPYYLGKFTPLENFFLFLGVILWAYVYYALIADSNRKQFIEMPVFIACGNIIWEFLWGFVIQEDMGIVLNWGYKIAFVLDIFIFINVFRYGQKQFRTSISILEYRLLLLVLLISWGALIYTYYINRYDLFTGSNSAYILNLFISGMYPVLFLSMGNSKLFSYPIAWCKFLGTVFFTVFLFLYFPKEYFVLCLGVLVFIADAYYVYIFSKRRT
>NZ_CP015217.1|WP_069606798.1|1396301_1397420_-|DUF2236-domain-containing-protein
MQNFTKYRTVTDPYADQIVEDYFQSGDPDKLKSLILFNTLTKNFAPIPSELPDYFKDYFEKTSVLPEWVDQKQISIAEKIFTSFGPQILMILCCKSLPMSYTCAYGAEVLIHTGRLVEQNGSTDKVYRRLMETTQFVVSVLQEGGLSAKGDGIRVAQKVRLMHASIRHFIKQSGPWNLEWGEPINQEDMAGTLQAFSSLILDGLAFSGIVLTLEEKNAFIHLWRVVGHIMGVLPELTPEKYEDAYAIGLAIFQEQRKTSEAGKILAKSLLDFMEYMLPGNLLDGVPLYFLQSYLGKENCLVLGLPWEEKEVLGEILEKIIMDFDKTLSKNDHFQKLVSHFSSKLILGMDHFYYKGKKAKFEIPPSLKGNWGV
>NZ_CP015217.1|WP_069606799.1|1397517_1398927_+|outer-membrane-protein-transport-protein
MQKTKIYFPEHSKILLFVCFVFLMGFSSLFGVGLFQPSHNTRYAGMGGVNLAIGGSPMDIATNPANLTKSQKGGLEFGIGLPYIRSTYKDQLADPNPDFAYTNSQNYNILAPLPYFGLNVPITNRLNYGVGVYIPGGGNGQVDGILRVTPNGQSFRDWSGIDIPGPIGDSKKIKEDLLTTFYVVKMTNALAYKFGNLSVGLGIEAIYSRQIAYQRFYDITHTLEVPGQGFDYRSRNAYSMGAIFGLTYAFTEWFKAAYSYQARNILPLDGGMQVGIGDANNYRRTGVSATFNLPEKHGIGFSFGNDSLRLGIDFLYYNYNSYDQTFKQTLEDSWFPTAFGKTNTVSQNIAYHDSWAGALGLEYKTDSFAFRTGYRYNTGVVRSEGMSALQAGIMVQQLATLGLSFLSGNWSFDFAVNYLFSRRIVASQGNDWAVLHSVFGPNDIRVLNYSQSLQSDVPAILFGASYRFE
>NZ_CP015217.1|WP_069606800.1|1398993_1399674_+|molybdate-ABC-transporter-permease-subunit
MTSMDWETIRYPVLLTLGVSALSTLIATTLGVLGAYLLSKSKFFGKELVDSILTLPLVLPPTVLGYYLLVLLGRNGFVGSFLSDLFHFSVLFHWSGAVIASILVSFPLVYRAARAALEDVDSDLEDTARTLGKGNFVIFWEILLPLSWRGILAGAMLAYARGMGEFGATLMIAGNIPKRTQTLSLAIYDAVQAGNESVAFYLVVLTSILSVVILTVSTKLFKKSHW
>NZ_CP015217.1|WP_069606801.1|1399691_1400462_+|molybdate-ABC-transporter-substrate-binding-protein
MQKIKIIVLFWFLSFLSPIFGETKKQIIVSAASSLTQAFTEIGEAFEKKHSTKVFFNFAASGVLLQQIENGAPADVFASADQETVEKGSEKKLFDLKSKKNFVGNRLILVVPADRSSKIQSLSDLKEEFVQRIALGNVLTVPAGRYAKEVLEKEGIYKILEGKLIPGENVRQVLDYVARGEVEAGFVYKTDAMLMKENVKIAVADLKTRPILYPVVIVSKTSLPKESKLFVEFLFSPEAQKIFQKFHFAKGESNWK
>NZ_CP015217.1|WP_069606802.1|1400538_1401246_+|ATP-binding-cassette-domain-containing-protein
MSLEIKIQKTLRDQDRKFFLDLDFSFQKDFLLIYGPSGAGKTLTLKTIAGLIRPDEGMISLNNRTFFDSKKKFDLPVQKRNIGYLPQGYSLFPHLSVRKNLEFPLKETFSWRLKADDAKKIDEILELFEIENLSESYPKNLSGGQKQRVALARALVKRPDLLLLDEPFAALNIELKNRMRGELEKIQKLYRIPVLIVSHDQSDVSFFSGESLTIENGSIFQKLNSSKKRKIKGKI
>NZ_CP015217.1|WP_069606803.1|1401437_1402508_-|sulfate-ABC-transporter-ATP-binding-protein
MGIEVKNIVKRFGNFTAIDNLSLEVPSGELVALLGPSGSGKTTLLRIIAGLEEADSGEVIFEGKEVGKKNAKDRGVGFVFQHYALFRHMTIFENIAFGLEVRKKSERPSKEAIREKVMSLLKLVQLENFHNRYPDELSGGQRQRIALARALAIEPRFLLLDEPFGALDAKVRKELRNWLRRLHDEIHITSVFVTHDQEEALEVSDRVVILRSGKIEQVGTPDEVYNHPKNSFVFHFLGDVNLFHGRVQGGQTQLGEIKVEAPEHAEIENANAVGYVRPYDVEILREAIPAQTIPAEIQYIHSTGRIVKVDLKRLDTGAILESQLNSTEFQNLNLLPGETVHIRFRKVKVYVEDYTI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1702289 : 1716194

Leptospira_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069607045.1\|1702289_1703048_+	GIY-YIG nuclease family protein	A0A0F6WCT2	Sinorhizobium_phage	4.4e-06	41.6
WP_069607046.1\|1703515_1704772_-	ATP-binding protein	NA	NA	NA	NA
WP_069609201.1\|1704820_1705405_-	hypothetical protein	S5WIZ6	Leptospira_phage	7.6e-83	82.0
WP_069607047.1\|1705407_1706769_-	hypothetical protein	S5VTD5	Leptospira_phage	1.6e-253	94.0
WP_069607048.1\|1706806_1708225_-	SBBP repeat-containing protein	S5WIY5	Leptospira_phage	3.2e-127	51.5
WP_069607049.1\|1708265_1709171_-	hypothetical protein	S5W9U9	Leptospira_phage	9.1e-144	92.6
WP_083244205.1\|1709462_1716194_+	hypothetical protein	S5VY91	Leptospira_phage	0.0e+00	71.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015217

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection