CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016445	Edwardsiella piscicida strain S11-285 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP016044	Edwardsiella piscicida strain S11-285 chromosome, complete genome	3 crisprs	DEDDh,csa3,DinG,cas2,cas3,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	0	13	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016044_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016044_1

1745682-1746198

Orphan

I-B,III-A,III-B

Consensus_repeat	Method
AGAAACACCCCCACAGGCGTGGGGAAAAC	CRISPRCasFinder
GAAACACCCCCACAGGCGTGGGGAA	CRT
GAAACACCCCCACAGGCGTGGGGAA	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP016044_1

>merge|NZ_CP016044|1|1745682-1746198|CRISPRCasFinder,CRT,PILER-CR
AGAAACACCCCCACAGGCGTGGGGAAGACATATCAGCTACCAGATAGGCGGGATAATCCGTAGAAACACCCCCACAGGCGTGGGGAAGACGCCTAACGGCTGCTCTCGATGGTAGCTCCCTCGGAAACACCCCCACAGGCGTGGGGAAGACAGTACAATAGACAAGCCGCCAGACCATGCCGGGGAAACACCCCCACAGGCGTGGGGAAGACTGACGACCGTTGACGTCGATTACCGTGTTGTTAGAAACACCCCCACAGGCGTGGGGAAAACAGCCACCGGCCAGGGCATCCTCGATGGTGACGAGAAACACCCCCACAGGCGTGGGGAAAACCAGCTTGCATCTTAGCAATGGCTTCGGTCAGCAGAAACACCCCCACAGGCGTGGGGAAAACGGCAGCGTTTTGATGTAATCGAGAGAATCAGCGGAAACACCCCCACAGGCGTGGGGAAAACGCCGCGATCGTAACGCCGTTGCAACTTCTCACGGAAACACCCCCACAGGCGTGGGGAAAAC

>NZ_CP016044|1|1|1745682-1746198|CRISPRCasFinder
AGAAACACCCCCACAGGCGTGGGGAAGAC	ATATCAGCTACCAGATAGGCGGGATAATCCGT
AGAAACACCCCCACAGGCGTGGGGAAGAC	GCCTAACGGCTGCTCTCGATGGTAGCTCCCTC
GGAAACACCCCCACAGGCGTGGGGAAGAC	AGTACAATAGACAAGCCGCCAGACCATGCCGG
GGAAACACCCCCACAGGCGTGGGGAAGAC	TGACGACCGTTGACGTCGATTACCGTGTTGTT
AGAAACACCCCCACAGGCGTGGGGAAAAC	AGCCACCGGCCAGGGCATCCTCGATGGTGACG
AGAAACACCCCCACAGGCGTGGGGAAAAC	CAGCTTGCATCTTAGCAATGGCTTCGGTCAGC
AGAAACACCCCCACAGGCGTGGGGAAAAC	GGCAGCGTTTTGATGTAATCGAGAGAATCAGC
GGAAACACCCCCACAGGCGTGGGGAAAAC	GCCGCGATCGTAACGCCGTTGCAACTTCTCAC
GGAAACACCCCCACAGGCGTGGGGAAAAC

>NZ_CP016044|1|1|1745683-1746195|CRT
GAAACACCCCCACAGGCGTGGGGAA	GACATATCAGCTACCAGATAGGCGGGATAATCCGTA
GAAACACCCCCACAGGCGTGGGGAA	GACGCCTAACGGCTGCTCTCGATGGTAGCTCCCTCG
GAAACACCCCCACAGGCGTGGGGAA	GACAGTACAATAGACAAGCCGCCAGACCATGCCGGG
GAAACACCCCCACAGGCGTGGGGAA	GACTGACGACCGTTGACGTCGATTACCGTGTTGTTA
GAAACACCCCCACAGGCGTGGGGAA	AACAGCCACCGGCCAGGGCATCCTCGATGGTGACGA
GAAACACCCCCACAGGCGTGGGGAA	AACCAGCTTGCATCTTAGCAATGGCTTCGGTCAGCA
GAAACACCCCCACAGGCGTGGGGAA	AACGGCAGCGTTTTGATGTAATCGAGAGAATCAGCG
GAAACACCCCCACAGGCGTGGGGAA	AACGCCGCGATCGTAACGCCGTTGCAACTTCTCACG
GAAACACCCCCACAGGCGTGGGGAA

>NZ_CP016044|1|1|1745744-1746195|PILER-CR
GAAACACCCCCACAGGCGTGGGGAA	GACGCCTAACGGCTGCTCTCGATGGTAGCTCCCTCG
GAAACACCCCCACAGGCGTGGGGAA	GACAGTACAATAGACAAGCCGCCAGACCATGCCGGG
GAAACACCCCCACAGGCGTGGGGAA	GACTGACGACCGTTGACGTCGATTACCGTGTTGTTA
GAAACACCCCCACAGGCGTGGGGAA	AACAGCCACCGGCCAGGGCATCCTCGATGGTGACGA
GAAACACCCCCACAGGCGTGGGGAA	AACCAGCTTGCATCTTAGCAATGGCTTCGGTCAGCA
GAAACACCCCCACAGGCGTGGGGAA	AACGGCAGCGTTTTGATGTAATCGAGAGAATCAGCG
GAAACACCCCCACAGGCGTGGGGAA	AACGCCGCGATCGTAACGCCGTTGCAACTTCTCACG
GAAACACCCCCACAGGCGTGGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016044.1\|WP_015871333.1\|1744550_1744859_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP016044.1\|WP_133176306.1\|1750453_1750852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_069578557.1\|1742927_1743572_+\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_CP016044.1\|WP_012848472.1\|1751589_1751928_+\|phage-holin,-lambda-family	unknown	unknown	gnl\|CDD\|368287
NZ_CP016044.1\|WP_069578554.1\|1740123_1741062_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP016044.1\|WP_071890287.1\|1747580_1748561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_069578552.1\|1739661_1739922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_015871332.1\|1744848_1745178_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|377579
NZ_CP016044.1\|WP_069578550.1\|1739399_1739630_+\|porin	unknown	unknown	unknown
NZ_CP016044.1\|WP_069579643.1\|1752662_1753445_+\|antA/AntB-antirepressor-family-protein	unknown	unknown	gnl\|CDD\|369825
NZ_CP016044.1\|WP_069578555.1\|1741058_1742441_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP016044.1\|WP_069578563.1\|1751174_1751504_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|374105
NZ_CP016044.1\|WP_069578561.1\|1749401_1750220_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274243
NZ_CP016044.1\|WP_069578559.1\|1744168_1744414_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_CP016044.1\|WP_069578558.1\|1743574_1743877_+\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP016044.1\|WP_069578562.1\|1750969_1751200_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP016044.1\|WP_084822832.1\|1751930_1752482_+\|glycoside-hydrolase-family-108-protein	unknown	unknown	gnl\|CDD\|226439
NZ_CP016044.1\|WP_069578556.1\|1742470_1742818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_133176305.1\|1748557_1749079_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_071890285.1\|1746585_1747347_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226091

Protein	Function_ID	Function_description	E-value
NZ_CP016044.1\|WP_015871333.1\|1744550_1744859_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.27087e-09
NZ_CP016044.1\|WP_069578557.1\|1742927_1743572_+\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	1.27514e-54
NZ_CP016044.1\|WP_012848472.1\|1751589_1751928_+\|phage-holin,-lambda-family	gnl\|CDD\|368287	pfam05106, Phage_holin_3_1, Phage holin family (Lysis protein S). This family represents one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.	4.997e-33
NZ_CP016044.1\|WP_069578554.1\|1740123_1741062_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	2.35771e-11
NZ_CP016044.1\|WP_069578562.1\|1750969_1751200_+\|hypothetical-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	4.25171e-17
NZ_CP016044.1\|WP_015871332.1\|1744848_1745178_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	4.81964e-31
NZ_CP016044.1\|WP_069579643.1\|1752662_1753445_+\|antA/AntB-antirepressor-family-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	4.27242e-25
NZ_CP016044.1\|WP_069578555.1\|1741058_1742441_+\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	5.59159e-103
NZ_CP016044.1\|WP_069578563.1\|1751174_1751504_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|374105	pfam15781, ParE-like_toxin, ParE-like toxin of type II bacterial toxin-antitoxin system.	5.21522e-44
NZ_CP016044.1\|WP_069578561.1\|1749401_1750220_+\|hypothetical-protein	gnl\|CDD\|274243	TIGR02642, hypothetical_protein_YPTB1803, uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. [Mobile and extrachromosomal element functions, Prophage functions].	1.10043e-19
NZ_CP016044.1\|WP_069578559.1\|1744168_1744414_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	3.04957e-15
NZ_CP016044.1\|WP_069578558.1\|1743574_1743877_+\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	2.20903e-38
NZ_CP016044.1\|WP_084822832.1\|1751930_1752482_+\|glycoside-hydrolase-family-108-protein	gnl\|CDD\|226439	COG3926, zliS, Lysozyme family protein [General function prediction only].	1.25863e-49
NZ_CP016044.1\|WP_071890285.1\|1746585_1747347_+\|hypothetical-protein	gnl\|CDD\|226091	COG3561, COG3561, Phage anti-repressor protein [Transcription].	4.25348e-36

>NZ_CP016044.1|WP_015871332.1|1744848_1745178_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNYTIEYYSEEVRLEVDQLPMGMRVRYQHLVERMEIYGSNLGEPHTSPFGDGLFELRIKGSDGIARVFYCTLTGKRIVMLHSFIKKTQKTPSAERKKAETRMKEVKHGW
>NZ_CP016044.1|WP_015871333.1|1744550_1744859_-|helix-turn-helix-transcriptional-regulator
MAGKRTPPTMTHDEMAAKWMEDPAFKAEYDAIEEEYALLDEMLAARKNAGLTQAQVAERMGTKATAITRMESNLASGQSGPSFATLKKFAHATGKKLQIRFV
>NZ_CP016044.1|WP_069578559.1|1744168_1744414_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MHTVTFSDACKHFADTMNRVTNNAEPVRVMRSDAPDIVMIDAGEYEAMLETIYLFSNPANAAHLNESLAQLECGEVVTVDY
>NZ_CP016044.1|WP_069578558.1|1743574_1743877_+|DUF1364-domain-containing-protein
MKKSGAFRSRAWRESARGQGCTLQIPGICNGDPQTVVLCHLPSPMHGMGYKSDDFWAVYGCSACHDVLDGRAPYDWRPGEREEVILAALYWTLRGRVSDV
>NZ_CP016044.1|WP_069578557.1|1742927_1743572_+|DUF1367-family-protein
MSSVQGKSLRRHKAEALGVLLPGGGIRYATDHDRDVMRAVPVGTPIALQPVGDRRNLKHHRKFFKLLALGMQYWVPAWEFVSRSESWVAHAVARRIAEAAADPALYDSVTREIAQGVLARLAEKRRGLFDAEVLKTEEAYLNHVMTQAGFCDVKPAPDGGTYRQRWSIAFANMDQATFDSIYRGVAGVIWNETLSQHFASEAEMALAVDQLMAF
>NZ_CP016044.1|WP_069578556.1|1742470_1742818_+|hypothetical-protein
MNLKPDVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQLFPREGDTQAAISARLRQVSVLRHGLVKQVRKVRNPDSGKTVWFYRLVPARRDGGV
>NZ_CP016044.1|WP_069578555.1|1741058_1742441_+|AAA-family-ATPase
MNANLQYLESSVIGGLLLGGLTPAAQEVLASLEPEAFSIPLYRTVYRVIQRQARARNLIDSLMVAEECGDEHFADVMSTAKHCPSAANLAGYAEMVSQEYQRRQFAITLDGMRREIISASIEQAGQAMDTLMSRLSLIRRPRLEPIPVVLGEVMGDFTETLERRLNNGLESDTLRLGIAPLDEVTGGVNPQDLVIVAGRPGMGKTSLAMRIATSVAASTLPGTSQRRGVLIFSLEMGAQQLAERGIAAAGGLAVSVLRNPATLDDEGWGRVSQGVAALDGLDIWIVDTARLSVEKIRAMAERQKQAHPTLSLILVDYLGLIDKPRAERHDLAIAHISGSLKSMAKALGTPVIALSQLSREVEKRPNKRPVSADLRDSGSIEQDADLIVMLYRDVIYHPDTPARHHAELIVTKSRFGQAGAVIYQRFINGHFVECDQDEARRLCTPMDQPPLASRYRGARV
>NZ_CP016044.1|WP_069578554.1|1740123_1741062_+|helix-turn-helix-domain-containing-protein
MSMMLMAMAMKIKTGNPLRKLVLLKLADNANDQGECWPSIPYLAATCEMAERSVQNHIKWLHEHGFLWVERRKSKNGGHQSNIYHLTLERRLRSPLEEDENDEPPPAENQGKKGAAQGAGSTGANGASLSEVPVQHIRQGLSFDSLGVAQPLHPEPIIKNLSLEPIPPLPPNNRDCVEPDKDKTDRGKPDWTAPERHHRELDNPEADHPERENLTRRPAERMDYGAYLAAYNELVGDRLPHAVTVNEERKRKLRALVKSLATPNLEGFRAYISAFLDHAKPFYFGCGDAGWIADFDYLLRQKTLTRVREGTL
>NZ_CP016044.1|WP_069578552.1|1739661_1739922_+|hypothetical-protein
MSWPQFIHDNIRRQLVGEGFDEALARKGAEAGVAHYVEHSTQASRPGKLFDDCLRVARRWVVAYGTVQERSQQRQQRLARSASARR
>NZ_CP016044.1|WP_069578550.1|1739399_1739630_+|porin
MKRQQKLNTAQSVALIAGIVGEKLDLAGEETRRLAITGALPGVARAFFSRESGGVASGTGEQVWHTVTQDDSPFSR
>NZ_CP016044.1|WP_071890285.1|1746585_1747347_+|hypothetical-protein
MTSQLIPVFNGTISNESVLLCNARALHDFLGIGKRFASWIVERIEEYRFIENQDYVIASQIREAKTRGGHNRKDYHLTLDTAKELAMVERNERGRQIRRYFIECERQLLARQQGAYSAPKPQPLSDGEIKNLKWLIDSIVNPFRFRAAWNQGVWYALRQATGVPSPYPFTADDLPALARELQRIMEISHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLGETRSQLNNVERQSLARLERRAG
>NZ_CP016044.1|WP_071890287.1|1747580_1748561_-|hypothetical-protein
MKSFLVLKILEEKGAFFPHTMFYDGVEIRSPKADSTKEINVLKISAKSANVDFEHYMICSRIAVIVETNNREKAIEIADRRFSVILDLLSSDIVLSSFTLSPIGFTKDLSTGDLCPITEHGYKASASFFRHHGRLQALDLNQVIIANKSELAERYLRSLHWRRNSKNESNIQLKILFDYFSAEALFKERDGDNIGGYIRWFMGFPNGTDTKRVSPDLILNLKSNARYLFWNRKLRETFDTMRTFRNKSVHNGFRSLEFTPLELELYQQVMVYGITRSQGAVRTAITNGVSSICEMKEYLPELFEMYISINDVHSNIIYGLDNLYQT
>NZ_CP016044.1|WP_133176305.1|1748557_1749079_-|hypothetical-protein
MFLSTKKNSKKYIKNLSNYIFSLLENNRVIEAKHYFDILYSIKKDSKETNFLGYTIAIRTFDSNAVEKFDSFLWRKKCDKKKILCLQLDYYYSIGNQNNFNHIASYLFKNCRFISEELNPIIELVIDRGTDETIVSLCDCFRRNKLEPSTELSSIIREPILRHLIKTISKVAK
>NZ_CP016044.1|WP_069578561.1|1749401_1750220_+|hypothetical-protein
MPIAIEQLIKMFDPRSVSAECLHLIRAVPGITREQILGAFAAVAQRHPLGFDLLLARYREDCQAEQRVRRAAADRVCRSPHPPYGTAVCQLAVTVALGRTLPAQRVVLAALLRKHGPRATLAAKQLADIQRQQKGLEKARVMLSEDDWRYRRNLAQYDALAGRSVALRRALADWADAEAARSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFRRSLVDEGIVITPDVWRAEYPPWVNDTLNGLYQEMQLAGDALSIRLTLERQAVA
>NZ_CP016044.1|WP_133176306.1|1750453_1750852_+|hypothetical-protein
MKAPSECCYGKIAGEAYRLARDGMPPTQAWDKAVVGKEKSCPRATFLGLCEMGYLKNIPAGSYQKSDSKNARYATVAANYLLAHRIIANDITSRALWKVALANEVNPPKTDNCQMHIVLTLWEAGVIQSPPR
>NZ_CP016044.1|WP_069578562.1|1750969_1751200_+|hypothetical-protein
MATSVRLDDEFVNDAKIHADAESRSVPKQIEHWARIGRIAEENPDLPYSFISEVLLAQGEVNNQKVTRYVRRTKRQ
>NZ_CP016044.1|WP_069578563.1|1751174_1751504_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSAGPNASEIAVYQSRRFEKALDKLPESQLARVEDEIDKIIADPEIGELKKGDLRFLRVHKFTLNSQLVLLGYSWQSMRVALYLLTIGPHENFYREQKQHRKADLKLIG
>NZ_CP016044.1|WP_012848472.1|1751589_1751928_+|phage-holin,-lambda-family
MANMHHNPETLSELLLSWWQGDTPVGGVLLAIVTAAVRVTYLGGGWKRTALEGALCGALTLTVVATLDYFSLPKSLTPAIGGAIGFIGVQQIQRFALYILQRKLGMPTDKER
>NZ_CP016044.1|WP_084822832.1|1751930_1752482_+|glycoside-hydrolase-family-108-protein
MALTKDQIFDALLGREGGYVDHPHDKGGPTNWGITEKVARAHGYTGDMRNLTRAQALEIYESDYWSGPRFDQVAEYSAPVAAELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISADGVIGPRTLSALRAYLDARGAEGELVLLRALNCSQGDRYLALAEQRVQNESFLYGWVRERVGLS
>NZ_CP016044.1|WP_069579643.1|1752662_1753445_+|antA/AntB-antirepressor-family-protein
MNISVASFYTDASSNHHVVNEFADIVPVISGRIGERETNIVSARALHGALGVGRDFTNWIKGRVSQYGFVVGVDYIAVENLSSPKRASAKSRQQISHEYLATLDMAKELAMVERSEQGRAIRRYFIQCEEALQLTAPEVAARYRRKLKARIGVANLFKPMCSALESVRAEQGKVTQSHHYSNESNMISRIVLGGLTAKQWAGMNGVVGDPRDSMNAEQLEHLSYLESTNITLLDMGMDYPQRKTELIRLSQRWMARRLGS

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Crispr_ID: NZ_CP016044_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016044_2

2166729-2166829

Orphan

Consensus_repeat	Method
ATGCCCCCACCCCGCGCAGGCGCGCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016044_2

>merge|NZ_CP016044|2|2166729-2166829|CRISPRCasFinder
ATGCCCCCACCCCGCGCAGGCGCGCCCATCGGCCTGCCCGTTATTCCCCAGCCAGCGACACGCTTCAGCCGGGATGCCCCCACCCCGCGCAGGCGCGGCCC

>NZ_CP016044|2|2|2166729-2166829|CRISPRCasFinder
ATGCCCCCACCCCGCGCAGGCGCGCCCA	TCGGCCTGCCCGTTATTCCCCAGCCAGCGACACGCTTCAGCCGGG
ATGCCCCCACCCCGCGCAGGCGCGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016044.1\|WP_069578727.1\|2153946_2154906_-\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NZ_CP016044.1\|WP_015461646.1\|2161189_2162575_+\|acetoacetate-metabolism-transcriptional-regulator-AtoC	unknown	unknown	gnl\|CDD\|183099
NZ_CP016044.1\|WP_069578735.1\|2165468_2166653_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP016044.1\|WP_069578745.1\|2180005_2180725_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_CP016044.1\|WP_015461660.1\|2178352_2179648_-\|zinc-protease	unknown	unknown	gnl\|CDD\|225768
NZ_CP016044.1\|WP_069578736.1\|2167780_2168791_-\|DUF2955-domain-containing-protein	unknown	unknown	gnl\|CDD\|371403
NZ_CP016044.1\|WP_012848846.1\|2158374_2159103_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_034167963.1\|2181143_2183066_-\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226350
NZ_CP016044.1\|WP_012848853.1\|2167030_2167588_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|370821
NZ_CP016044.1\|WP_012848851.1\|2164112_2165435_+\|TIGR00366-family-protein	unknown	unknown	gnl\|CDD\|280776
NZ_CP016044.1\|WP_071890292.1\|2159366_2161193_+\|two-component-system-sensor-histidine-kinase-AtoS	unknown	unknown	gnl\|CDD\|236901
NZ_CP016044.1\|WP_069578740.1\|2171414_2172230_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP016044.1\|WP_069578738.1\|2168780_2169896_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP016044.1\|WP_069578733.1\|2162803_2163466_+\|acetate-CoA-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|182146
NZ_CP016044.1\|WP_069578730.1\|2156849_2157716_+\|L-threonine-kinase	unknown	unknown	gnl\|CDD\|226917
NZ_CP016044.1\|WP_069578742.1\|2172254_2177957_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|237054
NZ_CP016044.1\|WP_012848850.1\|2163465_2164116_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP016044.1\|WP_109615062.1\|2183787_2184744_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP016044.1\|WP_015461657.1\|2169935_2170430_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_069578728.1\|2154902_2156282_-\|cobyrinate-a,c-diamide-synthase	unknown	unknown	gnl\|CDD\|234896

Protein	Function_ID	Function_description	E-value
NZ_CP016044.1\|WP_069578727.1\|2153946_2154906_-\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	1.11465e-148
NZ_CP016044.1\|WP_015461646.1\|2161189_2162575_+\|acetoacetate-metabolism-transcriptional-regulator-AtoC	gnl\|CDD\|183099	PRK11361, PRK11361, acetoacetate metabolism transcriptional regulator AtoC.	0
NZ_CP016044.1\|WP_069578735.1\|2165468_2166653_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP016044.1\|WP_069578745.1\|2180005_2180725_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	1.85422e-60
NZ_CP016044.1\|WP_015461660.1\|2178352_2179648_-\|zinc-protease	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	0.000358845
NZ_CP016044.1\|WP_069578736.1\|2167780_2168791_-\|DUF2955-domain-containing-protein	gnl\|CDD\|371403	pfam11168, DUF2955, Protein of unknown function (DUF2955). Some members in this family of proteins with unknown function annotate the proteins as membrane protein. However, this cannot be confirmed.	1.414e-20
NZ_CP016044.1\|WP_069578742.1\|2172254_2177957_+\|AMP-binding-protein	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
NZ_CP016044.1\|WP_034167963.1\|2181143_2183066_-\|AAA-domain-containing-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.265e-141
NZ_CP016044.1\|WP_012848853.1\|2167030_2167588_+\|restriction-endonuclease	gnl\|CDD\|370821	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component. Members of this family of bacterial proteins modify the specificity of mcrB restriction by expanding the range of modified sequences restricted.	3.77801e-36
NZ_CP016044.1\|WP_012848851.1\|2164112_2165435_+\|TIGR00366-family-protein	gnl\|CDD\|280776	pfam02667, SCFA_trans, Short chain fatty acid transporter. This family consists of two sequences annotated as short chain fatty acid transporters, however, there are no references giving details of experimental characterization of this function.	0
NZ_CP016044.1\|WP_071890292.1\|2159366_2161193_+\|two-component-system-sensor-histidine-kinase-AtoS	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	0
NZ_CP016044.1\|WP_069578740.1\|2171414_2172230_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.70124e-62
NZ_CP016044.1\|WP_069578738.1\|2168780_2169896_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	5.27227e-71
NZ_CP016044.1\|WP_069578733.1\|2162803_2163466_+\|acetate-CoA-transferase-subunit-alpha	gnl\|CDD\|182146	PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional.	2.9084e-149
NZ_CP016044.1\|WP_069578730.1\|2156849_2157716_+\|L-threonine-kinase	gnl\|CDD\|226917	COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism].	2.78643e-111
NZ_CP016044.1\|WP_012848850.1\|2163465_2164116_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	3.51606e-112
NZ_CP016044.1\|WP_109615062.1\|2183787_2184744_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.96911e-16
NZ_CP016044.1\|WP_069578728.1\|2154902_2156282_-\|cobyrinate-a,c-diamide-synthase	gnl\|CDD\|234896	PRK01077, PRK01077, cobyrinate a,c-diamide synthase.	0

>NZ_CP016044.1|WP_069578735.1|2165468_2166653_+|acetyl-CoA-C-acetyltransferase
MKNCVIVSSVRTAIGSFNGALSGVSAIDLGATVIRAALERARLDPQRVDEVIMGNVLQAGLGQNPARQALLRAGLSEAVCGFTVNKVCGSGLKSVALAAQAIQAGQAQALVAGGMENMSQAPYLLNAKARWGYRLGDGTLTDVILQDGLLCATHGYPMGITAENIAREYGISREMQDALALHSQQKAASALQRGAFQAEIVPVSVTSRKKTTLVERDEFPKADTTAEGLAALRPAFDQAGSVTAGNASGINDGAAALVVMEESAARAAGLTPLARIKGYASAGVAPALMGMGPVPAAQKALRQCRLQMTDIDLIEANEAFAAQFLAVGRTLGLEAEKVNVNGGAIALGHPIGASGARILVTLLHALAARDKTLGLATLCIGGGQGIALIVERIG
>NZ_CP016044.1|WP_012848851.1|2164112_2165435_+|TIGR00366-family-protein
MIGRISRFMARFVSRWLPDPLIFAMLLTLLTFGIALWLTPQTPLSMVRFWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPAQGVMLVTFFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHVAGLIPVSDTLFTGFNLFITLALIVVMPFITRLMTPRPSEVVSIDPALLQEEADFQKRLPADAPPSEKLEESRTLALIIGALGIAYLGVYFVEKGFNITINTVNMMFMIAGLLLHKTPMAYMRAVSAAARSTAGILIQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPLMTFFSSALINFAVPSGGGHWVIQGPFVLPAAQTLGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF
>NZ_CP016044.1|WP_012848850.1|2163465_2164116_+|CoA-transferase-subunit-B
MDTKQRIARRVARELRDGDIVNLGIGLPTRVANYLPQGIHITLQSENGFLGLGPVTTAHPDLVNAGGQPCGILPGAAMFDSAMSFALIRGGHVDACVLGGLQVDEQASLANWVIPGKMVPGMGGAMDLVTGARRVIIAMEHCAKDGSAKILRRCTLPLTARHAVHVLVTELAVFRFIDGKMWLTDIAEGCDLATLRAKTEAHFDVAADLQILRGDA
>NZ_CP016044.1|WP_069578733.1|2162803_2163466_+|acetate-CoA-transferase-subunit-alpha
MKTKLMTLQSARALFRDGMTIMVGGFMGVGSPPRLLSALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVSRVIASHIGTNPETGRRMIAGEMAVQLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVAAEGKQTLELDGKTWLLERPLRADLALIRAHRADPLGNLTYQLSARNFNPLIALAADVTLAEPDQLVETGALLPDHIVTPGAVIDHIVLPQENS
>NZ_CP016044.1|WP_015461646.1|2161189_2162575_+|acetoacetate-metabolism-transcriptional-regulator-AtoC
MKTRNRILIVDDEDNVRRMLTTALTLQGHETHTASHGAEALQRFADAPPDVVLMDIRMPTMNGIDALKVMRARQPRTPVILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQAMKQEIRSLHQALSTRWQWGHILTNSPRMMDICKDTAKIALSQANVLISGESGTGKELIARAIHYGSRRASGPFIKVNCAALPESLLESELFGHEKGAFTGAQTQRQGLFERAHRGTLLLDEIGEMPPPLQAKLLRILQEREFERVGGHQTIRVDIRIVAATNRDLQAMVREGGFRNDLFYRLNVIHLPLPPLRERRQDIALLANHFLQKFSSENQRDMIEIDPAAMSLLSAWPWPGNIRELSNVIERAVVMSTGAVIFADDLPAPLHQPIGGGAGAKSAPPGERNLKEEIKREERRIISEVLEQQAGNRTRTALMLGISRRALMYKLQEYGIDPAGC
>NZ_CP016044.1|WP_071890292.1|2159366_2161193_+|two-component-system-sensor-histidine-kinase-AtoS
MRFLRGLYPRRLRNQMILMAILMVIVPTLSIGYIVEIEGRSAVLAEKEKKLAAVVQLLDQALDERLDHFSALPRAERIRALNAELSPITERITQAFPGIGAGYYSKTLDAIITYAPFALYQSNVGVTIAADHPGREVMRSDTPIVFSGHQVRGDILNSMRPIRRDGEVTGYIWANELTQDIHRQARQMDLRIMAALAAGLLCSLLLIVLFSRRFSANIDIITEGISTLAHKTPAPLPELPGELGQISRSINALAQTLRETKTLNDLIIENAADGVIAIDRLGAVTTINPAAEAITGYTRDELVGQPYAALFSDSHFASPVLDTLAHGTAHLAQEVSFPARHRTIEISVTTSRIHNPHGELMGALVIFSDLTARKETQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTTQPAHQEYLSVVLKEIDSINKVIQQLLDFSRPRQSQWQQVSLNALIDEALILVQTSGVQARIAFHCALDRTLPAIVADRELLKQVLLNILINAVQAISTRGEIRIRTWQPAPAQQAVAIEDSGCGIDIALQQKIFDPFFTTKASGTGLGLALSQRIINAHRGDIDVVSTPGSGSTFTLTLPRNPPESPAE
>NZ_CP016044.1|WP_012848846.1|2158374_2159103_+|hypothetical-protein
MNINALLHLFQKNHSYDINDNASNHADRVNLASFRKISEDSHDARITFDLTMRQCDDLLKLGCNKPLDKVQTLCDICTDLANRLIMEATSISHARHAVNHRLAQDIDSYIGSRANAVLDDVRHQRQREIPKNARAEIVRSAMLEGGYEKIVEEKSDDKLLSFARPGLTAEINILADQKLSLTSRETNYFNKEIKPLIYDLTYDAIVSHPEIAQQHLQQQHYMPAAQVLALVREKAERWLAEH
>NZ_CP016044.1|WP_069578730.1|2156849_2157716_+|L-threonine-kinase
MAVAQCPASCGELIQGWILGSEKLISCPIGWYSTVEVSRGAPRADERPLARAMVTRLLQHWRYPAQMSREIRIDIHSTIPVAKGMASSTADIAATAVATAHHLGHTLDEGTLAALCVSLEPTDSTLFRQLTLFDHNDASTQIACAAPPALDLLVLESPLTLRTADYHRAARRAALQAGAPALQRAWDKVQAACATQDPYRMGEAATLSAIASQRLLPKPGFDALRSLVDACGLYGINVAHSGSVVGLLLDRGKNDVDEVKWRLTQQRLTRHWPAQHLLSMVPGGVTLL
>NZ_CP016044.1|WP_069578728.1|2154902_2156282_-|cobyrinate-a,c-diamide-synthase
MAAQQYAFVLAGTGSGCGKTTVTLGLLSLLKQRGLRVQPYKVGPDYLDTGWHTAVCGTASRNLDSFMLPAPTLNALFGERMQGADVAVIEGVMGLYDGYGTDPNYCSSAGMAKQLGCPVILLVDGKAVSTSIAATVMGFQHFDPTLNIAGVMVNRVNSEAHFALLKTAIEHYCAIPVLGYIPQMAGVSLPERHLGLVTARESVVRAQPWQAFAAALERTLDIDRLLSLCPMASLPPGAWPALPDADAGRGLTLAMAEDEAFNFYYPDNVALLERTGVEIVRFSPLHDAQLPDCQMVWLGGGYPELYAERLAANASMLASLRAAHRRGAAIYAECGGLMYLGSTLEDADGAIHPMANIIPGHSKMGQRLTRFGYCEAQARQPTLLADSGETLRGHEFHYSDFSPHTPALLACRKVRDGVTTQAWDGGWQVGSAFASYLHVHFAQRPRMLSRWLAAARAAL
>NZ_CP016044.1|WP_069578727.1|2153946_2154906_-|cobalamin-biosynthesis-protein
MTLLAWCLAWLLDAAIGDPPRWPHPVRWMGRLITVVQRCVRRCCRSEGALRIGGGVLWLTVVGVTWGVAWGGLTLARAIHPWLGWAVEVWMIFTALAGRCLADAAREVERPLRAGALAASREKLSWIVGRDTSSLQPPQINRAVVETVAENTVDGIIAPLFFLLLGGAPLALAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDAANYLPARLSWLLLSAAAWLCREDVARALRIGWRDRRCHSSPNCAWPEATVAGALGIRLGGPNDYFGLRVEKPWIGDARRAVTPDDISRTIRLMWVASALALALFMAVRWLLVGAA
>NZ_CP016044.1|WP_012848853.1|2167030_2167588_+|restriction-endonuclease
MKGDNRAFSLLFPMEKVFEHYVAKTLREQYAPQVAVHAQVQSKSLVTHADAQWFRLKPDMVMIQGKQVIAVLDTKWKLLDPTLANGADKYALQQSDFYQMFAYGHHYFDQQITVREMFLVYPAHANFTAPIAQHFAFPTPGKPPLRLWVVPFVIDKVNPRLALPEASQLYQACAAAGAVSLSVSG
>NZ_CP016044.1|WP_069578736.1|2167780_2168791_-|DUF2955-domain-containing-protein
MFHSPANALLRVALFPVLLLFWQYVFGTDLPLLAPAMCAVFLTTTHNPPPLIMVFLMAVVLYLTSWVQAWLATLLLDYPQVYYLALLGIFYWCMDRTRKNAQDLVAILLIVATAMIAVFVKQKAISVDQIPLALLKNIFVAGFTAYLAYFIFPGGEPLTGASAAANSASTRPHRRWHTLFKAALVLTILCTGISLDLEQSTIITIVVALIIKDSSPALGHNYGIRRLLTTYASVLYAVPPLIMCVLQTNLIGQLGVTVVCALFMGIHAVKKKASYNSIQLLYSSYVVLVFYSITSTSIDAFSDGLIRFSSVMLAVALGVMALIIMQPAPSAEPEIR
>NZ_CP016044.1|WP_069578738.1|2168780_2169896_-|HlyD-family-secretion-protein
MSDSTPSEARSAAPSAQDKTTQARSLTYSIFLAVVILWIYSLWADRVTPMTDMGRVNGEIIRLVPQVSGPIADIDVANNDEVTKGQLLATIDKTPFALEVKAADLALQQAAQSYHADSASIKVAQANEASARAVAHNARLQVDRYRVLLKKGTISQAAMDDTLTQLKTAEANLAQTTSALEKARFENGPRGEENPEIQTVLNRRAQARLNLEYTDLRAPANGVITNMALAKGNYASAGQPLLTFINTDKLWLTAMVRENSLAHLKRGDGVKVVLDAYPGQRFSGKISSIGFGSSGNGNLQVDASTGLLDSPTANPSAQRFPVNIQLDPLPPGVNLRYGGRAVVAFYPGRSYLGERLEDLWIWAWSYISYVS
>NZ_CP016044.1|WP_015461657.1|2169935_2170430_-|hypothetical-protein
MSKSTIRLQDSLAAGLINGVINGAIAHWHFKDVTRVPLSLNAIAHEQTSVWGEAISLTFGLGIILSLITAALFVKHLHKALPAMQNKFNPSFWRTMLPIAITQCAALFGWFVALAVIWTKYMGEIIVPSSWAAFLVGGFAFVITLFIEYRTKQSLITKKISLLD
>NZ_CP016044.1|WP_069578740.1|2171414_2172230_+|Cof-type-HAD-IIB-family-hydrolase
MEDHILKYKAVVTDLDGTLLNPQGQLSTHTLVILKKLSALGITLVFATGRHPRDAQRIAQALEQRPHIVGLNGSLTLCQQSDAILCEHVIAQDIIADIMRFIAPYHIHLSAFDSHGWKLYEVNEMANDYVKLSGFSYLQIAPSDIFSLKINKLLLWSPNDIAPLEQRLQQQFGQYLACYRTSAQQLEIGPRGISKASAVAALLAEKGIDFQRQAIAFGDGHNDTEMLRQAGLGIVMDNAPRELKMQLGTLPVAQSNADDGVAQMLQHIFKI
>NZ_CP016044.1|WP_069578742.1|2172254_2177957_+|AMP-binding-protein
MKLLASRYEKSFYIEALTESHNVISNSFLTLDIEGACDPVLMQQAMHHVFSHPEFHVRYELQGEHLYKFVNHQEYAIPRIDLTTQRDPEYAFQQLLTTYYSEKLTFEHPRLFKACLCQIAPAHYRAIIMVHHICLDGTGFQRFFDELTQSYGRLRRGEALAPIAAPLAQEQAPPLSESLQQEALAFWRRALDGQPVRTDFNHAINSEQRRACTEKCALGTDLSQRVKAYCRRHGLTPNLFFKGLYALLVGRMANQRMIAISSPMDRRSKAMRRQIGCFVNTRLDLFDLRSIATLSAYWAQIRQFNKATKPYAELPYAQLVHALQKQSQDPEAMLSNVVFGSTVGIGETYPLDAQCRIAQDYRFIDLNADLQLLFCESSQHSFNFRFDYLQGFQACGLFTHFLARFQRLIAWTLAQDDGALTQMPFLGRAELDRLTQLNQRRQPYPDDSLAQRVQRWVQETPAATALIDSENNQAIDYAQLHERVSDIAHYLSTLAPADQRAQGCVVINLTSLVDTVIAILATQYSGLAFTCVDASAPMARKQLIMEQLSPLLLIGDAIPGAQASHAHHIAALELIPPAPGRYLPRPDAAEQISQYIFTSGTTGQPKAVALTHRALVSTLYQNDAIPVGQRLLYSANEAFDAASLQLWLALLHGRTLVIPQRGDIANPHAMTQLLQRYQIDHLFLTTGLFETYMASAKRDIFGQLEILCFGGDSVSQQAVAQGLECNIRHLINLYGPTETSIYVTAHRCGPQDLAAGIIPIGKPRPNAQTWIVDDSDNLLGIGMVGHIIVSGDGLAQGYLGQPHNAAFSSIPLPDATGESTRRIYRTGDYGYWREDGELVFCGRRDHQIKLRGYRIELGEIRQALEQIDGVTMAVAVLSRKGQHKRLLGYYQAAQPLDNPYLIQQLQQRLPSYMVPAQLIYLERLPLNRNGKLDRQALPEPELIVEQDDSLTPLQQTLLAQAASVLSLPSLTLSDDFVAQGGDSISAILFSVGLEEQGIRLSTADIMKYRCFADMARQASWVASAQTCLGQQTGDVALLPAQRWFFAQAFDAPAHFNQAITLRLPAQMEDTRLAAALEALTRYHDSFWLRFTPSGRQFFADPAATHVTLSTLDASDWSQVERQVAEINAAFRLQQGPLLRALRFTLGDDDATYLYLCAHHLIVDGVSWRRIAADLQSYYEQGAAFTPAPYSNTHCYRSQWEAFQPRAHEVDYWLRHADALAACRRGGADSRLQRRQISLTPRQTQALLGQANHPYGTQINELLISALYRLLHHPEHGLGLLLEGHGRKAFGDAIRSEATVGWFTSIFPLHLPPHAGDWDTLIKQTKQTLRTLPDKGENYLHIAYHHPEPRVQQSLQAMLQLPVSFNFLGRFGHGGDGEWAIEHHFNHHLVAASNKPLRDLDINAWISADRLYIDIEMAGVEVAGMTLAQLCERLGQTLDQLLTHCCDPHCRGGLVPCDLDDVVLDQATIARLEHQVGPLDTIYPATDFQRELLYFNRANPDYQIDQLVFHLEGALDRQAFADAWRRVLARYDMLRAGFSDSVDPGQPLALIARQVPLPLRIMDWEGQDSERRLQQCIIDERQRPFDWSTPPLLRLALARLSATRHLLVFTFHHVLFDGWSMQIFLREIMQDYQRLTHGERVTQPPSSFAAFPRWLAAQDKSAAADFWGAYLADAPMNMRIPADVCDDGSHALRVQSVKGHLEAQHGALLQTFARRCGLTLNQLCQLAWAITLAKYTHSRDIVFGTTLTRRPVEISRVTDLVGLFVATPPLRVKLTESLDAMAQQLIDAGEPRTEHAFYDLNHYDARWRPTAPFGTLFVFENYPEQKSQEPYQVQYHHRGTVSGSNHQIVLCQFPADSMPFSLFYDSAELSAALAERIAHDYRTTLLQLPASRQLSDLLPHA
>NZ_CP016044.1|WP_015461660.1|2178352_2179648_-|zinc-protease
MKKPSDSNLKRIKAKTIGGALSQPAVELAVSVDYFAENKIFFALNNYVEGKIHNPGAGEAYLPEYHIEDEKDARIAEGSINGIREPFGEAFTYATEILDKYANYYGERLFDGLVTLLLDKDTSIYKVAATSWMNQDRTISIKVGKDDFSFKTLSDRSIIYHEVGHAINYQGVFVDENFAAAFAEAWCDVFACFFVNQNVNSFDEIDWSIGTGYVYPSFGSDKVRSLDHPENDVPKSTTRVDQITPDMKRYQKGGFIRYFYHQLVKKLSATMAVREALSTAYDLFYDLRKNAFSKSMKLEDFAGDIYKLYNKFGHKDKIPEHVLVEAMDDVGLDPVVTYRFYNGGGYVARIQVVYIDQQGETHTIDSHQVSVGIPTDVQIPIVGSESCTIFVQIDLEGFKTFKLLFPESFKSQWIKSWGTIFSPQAEIFPFE
>NZ_CP016044.1|WP_069578745.1|2180005_2180725_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MSRDGAEQGDDADFIQGVTWLSFPGYPGRIGACRFSLSRYRDEGAYQGIALPLSLQQAAPKRQAEFIAGRWVAHQVMTALGICDGVIARGADHAPQWPPGIAGSISHAAGMALCAAHPTSRRGGVGIDVETWLAPSRARTLQSAIAHPHELAALLGTAPASRLLITLLFSAKESLFKALYPEVKRWFDFHDAQMTAIDWRRRTFRLTLLTSLASDYPAGRCFHGQFLSDDEAVMTLIYC
>NZ_CP016044.1|WP_034167963.1|2181143_2183066_-|AAA-domain-containing-protein
MAVPFHFAFIAPYPQLATLAQQQADALNCRLTVIDGAFDSVARQVSCLPKEIAAVISRGGTAEKIRLYTHKPVVSIETSALDLLALLLPLRGQAATIGVISYRQPLPGVELIAQALGMRICQDVFHSREDIDALLQRDEMRNLDIIVGGILVVRAAQRLGVNARLLTADEDAIHRALQQAILLAQAEDESRHKAAQLDTMLSTIAEALIVTDDQDRIIQVNPAALKILQCEVSEVMGLEIRSLIPDSQTQDVLRSQQSQLGQVLEVKGETFVANRVPIISQGRSLGVVCTLSASRLIRHAEHRLREKERLRQGFVARYNIDDILTSSPKMQALKTLVLHYAATQANVLIQGESGTGKELFAQSIHRNSSRSHRPFVAINCAAIPENLLESELFGYVDGAFTGATRKGKAGLFELAHGGTLFLDEIGELPLNMQTKLLRVLQEKEIMRIGSNEVVPVDVRIITATNQDLQGQIGERLFRNDLYYRLNTLHIQIPPLRSRDDDLCFLGRRFLQEMECSLAEPQEKALLVALCRHPFNGNVRELRAIMERFSILYRVFPALSPAQLLQRYCLTEETSRIDEKNGAEEGEVLTCQVPLLDDFKLMTHHCQCQIIQHYLDKNQQNHQKVAQQLKISKMSIYRHLR
>NZ_CP016044.1|WP_109615062.1|2183787_2184744_+|EamA-family-transporter
MSEGIMDGLSKDKKTAYLLLVVLWLVWGNFWVVSKNALPVMGGAWMLSLLKIAGGVVVLFIALFIKRKSLSMTPPPFLPTLLYGLTQTTGFTALTVFALTHGGAGKVSVLAYSMPIWVIILNTLVLKQKLAISQAIKLSIPIIGFVIVVAPWSINESKQVISSVMALLGGLSWGISVLILKWILKKNPTVNVLNLTAWQMLYGLIPLIALAWYMPHPPIVFNQTFILSFLYIAIVVSALGWFCWAAIASKLPANIASINSLAAPAVAMMSGMIFLGNMLSATDLLGVTLIFGGIIIIFATSKKKSNKVSTAVASSQKS

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Crispr_ID: NZ_CP016044_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016044_3

2755636-2756091

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GGAAACACCCCCACGGACGTGGGGAAGAC	CRT
GAAACACCCCCACGGACGTGGGGAAGAC	CRISPRCasFinder
GAAACACCCCCACGGACGTGGGGAAGAC	PILER-CR

7 spacers

cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP016044_3

>merge|NZ_CP016044|3|2755636-2756091|CRT,CRISPRCasFinder,PILER-CR
GTCCACACCCCCACGGACGTGGGGAAGACGTCGAAGATAACAACCGAGACCACGGGAAAGAGGAAACACCCCCACGGACGTGGGGAAGACGTGATAAGCAACTTCCCAGGAATGACTGAGGAAGAAACACCCCCACGGACGTGGGGAAGACCAATTCGTCGGGCCACCACGATCGGCGGGATGGGAAACACCCCCACGGACGTGGGGAAGACTCCAAGGGCTAAGGCCATCTCTGTCTGCCAGCGGAAACACCCCCACGGACGTGGGGAAGACGAGTTCTTTTTGAAGTCGCCAGGAATAATGAAGGAAACACCCCCACGGACGTGGGGAAGACCCACTGGAGTGAGCTGAAAGCGGCCATCATGGAGAAACACCCCCACGGACGTGGGGAAGACAGGCCATCAACAAAGTAAAAGAGCCATCTAGGGGAAACACCCCCACGGACGTGGGGAAGAC

>NZ_CP016044|3|2|2755636-2756091|CRT
GTCCACACCCCCACGGACGTGGGGAAGAC	GTCGAAGATAACAACCGAGACCACGGGAAAGA
GGAAACACCCCCACGGACGTGGGGAAGAC	GTGATAAGCAACTTCCCAGGAATGACTGAGGA
AGAAACACCCCCACGGACGTGGGGAAGAC	CAATTCGTCGGGCCACCACGATCGGCGGGATG
GGAAACACCCCCACGGACGTGGGGAAGAC	TCCAAGGGCTAAGGCCATCTCTGTCTGCCAGC
GGAAACACCCCCACGGACGTGGGGAAGAC	GAGTTCTTTTTGAAGTCGCCAGGAATAATGAA
GGAAACACCCCCACGGACGTGGGGAAGAC	CCACTGGAGTGAGCTGAAAGCGGCCATCATGG
AGAAACACCCCCACGGACGTGGGGAAGAC	AGGCCATCAACAAAGTAAAAGAGCCATCTAGG
GGAAACACCCCCACGGACGTGGGGAAGAC

>NZ_CP016044|3|3|2755637-2756091|CRISPRCasFinder
TCCACACCCCCACGGACGTGGGGAAGAC	GTCGAAGATAACAACCGAGACCACGGGAAAGAG
GAAACACCCCCACGGACGTGGGGAAGAC	GTGATAAGCAACTTCCCAGGAATGACTGAGGAA
GAAACACCCCCACGGACGTGGGGAAGAC	CAATTCGTCGGGCCACCACGATCGGCGGGATGG
GAAACACCCCCACGGACGTGGGGAAGAC	TCCAAGGGCTAAGGCCATCTCTGTCTGCCAGCG
GAAACACCCCCACGGACGTGGGGAAGAC	GAGTTCTTTTTGAAGTCGCCAGGAATAATGAAG
GAAACACCCCCACGGACGTGGGGAAGAC	CCACTGGAGTGAGCTGAAAGCGGCCATCATGGA
GAAACACCCCCACGGACGTGGGGAAGAC	AGGCCATCAACAAAGTAAAAGAGCCATCTAGGG
GAAACACCCCCACGGACGTGGGGAAGAC

>NZ_CP016044|3|2|2755698-2756091|PILER-CR
GAAACACCCCCACGGACGTGGGGAAGAC	GTGATAAGCAACTTCCCAGGAATGACTGAGGAA
GAAACACCCCCACGGACGTGGGGAAGAC	CAATTCGTCGGGCCACCACGATCGGCGGGATGG
GAAACACCCCCACGGACGTGGGGAAGAC	TCCAAGGGCTAAGGCCATCTCTGTCTGCCAGCG
GAAACACCCCCACGGACGTGGGGAAGAC	GAGTTCTTTTTGAAGTCGCCAGGAATAATGAAG
GAAACACCCCCACGGACGTGGGGAAGAC	CCACTGGAGTGAGCTGAAAGCGGCCATCATGGA
GAAACACCCCCACGGACGTGGGGAAGAC	AGGCCATCAACAAAGTAAAAGAGCCATCTAGGG
GAAACACCCCCACGGACGTGGGGAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016044.1\|WP_069579026.1\|2748795_2749119_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_071890331.1\|2756142_2756430_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|187779
NZ_CP016044.1\|WP_069579031.1\|2753448_2754054_+\|3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|374562
NZ_CP016044.1\|WP_069579035.1\|2756410_2757289_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP016044.1\|WP_069579047.1\|2761706_2764352_-\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP016044.1\|WP_069579044.1\|2759697_2760222_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP016044.1\|WP_069579011.1\|2751635_2751908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_071890393.1\|2747988_2748657_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NZ_CP016044.1\|WP_069579028.1\|2751904_2752570_+\|morphogenetic-protein	unknown	unknown	gnl\|CDD\|119344
NZ_CP016044.1\|WP_069579025.1\|2747694_2747901_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|374243
NZ_CP016044.1\|WP_069579046.1\|2760218_2761703_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP016044.1\|WP_069579041.1\|2759065_2759701_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|273869
NZ_CP016044.1\|WP_069579007.1\|2749751_2750690_+\|exonuclease	unknown	unknown	gnl\|CDD\|234726
NZ_CP016044.1\|WP_069579008.1\|2750686_2751034_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016044.1\|WP_069579038.1\|2757292_2758006_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP016044.1\|WP_069579040.1\|2758009_2759053_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP016044.1\|WP_069579033.1\|2754053_2754854_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|272946
NZ_CP016044.1\|WP_034165921.1\|2754939_2755140_+\|excisionase	unknown	unknown	gnl\|CDD\|225848
NZ_CP016044.1\|WP_012849316.1\|2765768_2766446_+\|DUF1345-domain-containing-protein	unknown	unknown	gnl\|CDD\|377769
NZ_CP016044.1\|WP_012849317.1\|2766596_2767304_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132380

Protein	Function_ID	Function_description	E-value
NZ_CP016044.1\|WP_071890393.1\|2747988_2748657_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.31743e-35
NZ_CP016044.1\|WP_071890331.1\|2756142_2756430_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187779	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.89061e-31
NZ_CP016044.1\|WP_069579031.1\|2753448_2754054_+\|3'-5'-exoribonuclease	gnl\|CDD\|374562	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like. This is a highly divergent 3' exoribonuclease family. The proteins constitute a typical RNase fold, where the active site residues form a magnesium catalytic centre. The protein of the solved structure readily cleaves 3' overhangs in a time-dependent manner. It is similar to DEDD-type RNases and is an unusual ATP-binding protein that binds ATP and dATP. It forms a dimer in solution and both protomers in the asymmetric unit bind a magnesium ion through Asp-6 in UniProtKB:P9WJ73.	2.23439e-27
NZ_CP016044.1\|WP_069579035.1\|2756410_2757289_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21786e-120
NZ_CP016044.1\|WP_069579047.1\|2761706_2764352_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.05135e-91
NZ_CP016044.1\|WP_069579044.1\|2759697_2760222_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.30198e-23
NZ_CP016044.1\|WP_069579025.1\|2747694_2747901_-\|transcriptional-regulator	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	5.23937e-05
NZ_CP016044.1\|WP_069579028.1\|2751904_2752570_+\|morphogenetic-protein	gnl\|CDD\|119344	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	2.86881e-07
NZ_CP016044.1\|WP_069579038.1\|2757292_2758006_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	4.60338e-53
NZ_CP016044.1\|WP_069579046.1\|2760218_2761703_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	2.24182e-70
NZ_CP016044.1\|WP_069579041.1\|2759065_2759701_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.67132e-45
NZ_CP016044.1\|WP_069579007.1\|2749751_2750690_+\|exonuclease	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	1.12392e-22
NZ_CP016044.1\|WP_069579040.1\|2758009_2759053_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.07335e-112
NZ_CP016044.1\|WP_069579033.1\|2754053_2754854_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	0.000324721
NZ_CP016044.1\|WP_034165921.1\|2754939_2755140_+\|excisionase	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	6.09054e-09
NZ_CP016044.1\|WP_012849316.1\|2765768_2766446_+\|DUF1345-domain-containing-protein	gnl\|CDD\|377769	pfam07077, DUF1345, Protein of unknown function (DUF1345). This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.	2.65781e-66
NZ_CP016044.1\|WP_012849317.1\|2766596_2767304_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	4.33772e-52

>NZ_CP016044.1|WP_034165921.1|2754939_2755140_+|excisionase
MTHNMTPDSLVDLKFIMADTGFGKTFIYDRVKDGTLVKPEKIHGRSRWRYSDHCEFKNRLLSSSNG
>NZ_CP016044.1|WP_069579033.1|2754053_2754854_+|chromosome-partitioning-protein-ParB
MANSFKQMLKNGTIKRRDSGMFIKLDDIHVQQGFNKRVDDERTQQADDELFQYILTGGTVPPIEVRPSNDGGVWVVEGHRRTAAFRRVRAEGKPLEWIAIAPFTGSDVERVARIMTSNNQLPLTQFEQSLVVKELSAFNLTPDEIAKLIHKSRATVDKLLILSASNYDVQQLVKDGEVAMDVAVDRVKEHGESAGDVLQEDVKRAKAQGKKKVTRSVTGSQFSATRARRLVELLSDAEIDGDGRTLVLREGVGEEVLKIINEYMHR
>NZ_CP016044.1|WP_069579031.1|2753448_2754054_+|3'-5'-exoribonuclease
MTKDVVIDTETMDTVPSALLLSIGAFAVDVSDLEDTQANILKVARDIDLQDFSVLAFYTRLDATDQLMLGRTVSQKTQTWWKDQAEDAHEALTGDRVALSEALIGLSRWLNYHPGARVFFRGPDFDGAILENAYRMCGLECPWRYNGKRDVRTYIDTKVPTRGRKGYLEGHQPCFQMIKHHALHDAMNDAEQMAIAYQEAC
>NZ_CP016044.1|WP_069579028.1|2751904_2752570_+|morphogenetic-protein
MKDLPIIFNDEMVRAILSGTKTMTRRPVKDRCLELFEVAASVGECHSLQFCDIADERSQPYYREFCPFGAVGDRLWVREAYQGSLFDYEQMEAYLEDNSKFEKQEYCEYRADGGSRPEYYDGDDNLRHGWRPSIHMPRWASRITLEITDVRVERLQDITEGDARSEGVTLSNPRILSHRDEFRQLWGDIYGCDGWRSNPWVWVIAFKRVDTGSAAGTSKGE
>NZ_CP016044.1|WP_069579011.1|2751635_2751908_+|hypothetical-protein
MTVKSIAETHGMDVDFVQWFFDNKKDGAGNVWFIVLAAMWEARDYYKKREAELRAQGVEMLVKTCKENVWCEDDVNFMLCYAKQLREAKA
>NZ_CP016044.1|WP_069579008.1|2750686_2751034_+|hypothetical-protein
MSKYRKGTLYLRKMKPSDKSNDFRICMRMELFSDKKAWKRPEEIKPVVLIRHGMKRIVSVFMNMDDAYGCLISGALEKRARNSRHNPSRGMRYTKGDMKKAFRKWALKHNRGVAK
>NZ_CP016044.1|WP_069579007.1|2749751_2750690_+|exonuclease
MKLAQIKNAIAYKATLPNTENLLAHMQEQLFTDVIETAFHGYGFVANDITGEMITPITGGFSFTIRYDEKVIPAKAVVAKLSERIAELQAKNLLGEKISRPVKNELKQAVLAEMCKTAFIKTTLLTCYYNEENHLLFVDTPSANMANMCMHLLVKVTGSVKTETINISDPKHGLTTRLKNYLQNNMQPFDGFTVGNMVQLGRMDEQKEVITYSETELFSISDEILSKLSVCFTVEKLRLVFNGDITFVLTNKFHFKQINLLSDPAYEDDDDLPYRWRHEAGLKLFLLSNIVLGLVSVLEYKNDAEKNAEASA
>NZ_CP016044.1|WP_069579026.1|2748795_2749119_+|hypothetical-protein
MAKTERESKKVTSLPAGMTFKPLYEKCPLCGCNLNQLPNAFVDKVNTDSAEDSASKAEFSFEASTKKALTPNLFDLCKAWMILPFSTAKKYSTKRNKKRLIGWKFWK
>NZ_CP016044.1|WP_071890393.1|2747988_2748657_+|LexA-family-transcriptional-regulator
MKTNDEIRRENARSLRDSSGGNKFFAGIIDREPTQISRIIGKNPSKNIGDDLARHIEKCFSLPSGWLDQEHVVSTSCKIKEVSDTELNIHLVPVISWVQAGAWKEMGFSEVDLSSVDHYPCPVPCGPMTYILRVIGDSMIEEYRPGDMIFVDPEVPPEHGDDVVALMLDSGETTFKRLIEDGGKRYLKALNKDWPEPYLPINGNCSIIGTVIFSGKPRRYAV
>NZ_CP016044.1|WP_069579025.1|2747694_2747901_-|transcriptional-regulator
MSDYWNTLTTDQKADLAKQVGSSAGYLRLVFKGHKKAGFSLAQRLEDVTCGKVSKSDLRPDIYPNRTR
>NZ_CP016044.1|WP_071890331.1|2756142_2756430_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLIVLANDLPPAVRGRMKLWFIEPRPNTFVSGIKDSVADTVIEYLYQHCSPAAGVVIFKSIARAPGYQIHTIGSPTKTLCEINGLQLVVEKRLNQ
>NZ_CP016044.1|WP_069579035.1|2756410_2757289_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRGQRLFVKITRESLPQIKDKYPFIYLERGRLEIDDSSLKWLDAEGQVVRLPVATLNAILLGPGTSLTHEAVKTAAAANCAICWVGEDSLLFYAAGFLPTANTRNLNHQMRLACNKKSSLEVARRMFAYRFPDADLAGKSLKEMMGMEGSRVRALYQQKAQQYGVGWRGRQYIPGKMEISDTTNRVLTSANAALYGILCSALHAMGYSPHMGFIHSGSPLPFVYDLADLYKENLCIDLAFSLTREMAGRYEKALVSSRFRERVIELNLLASVARDIPQLLGGANIDADSSR
>NZ_CP016044.1|WP_069579038.1|2757292_2758006_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQPYLLLWLEGPLQSWGHDSRFGRRETLHFPTKSGVLGIICAALGAGGPQISLLAQFADLDMQVHSFARRDKNGALVPREPVLRDFHMVGSGYDDKDPWQSLLIPKTREGKKAVGGGTKMTYRYYLQDQAFAVLFQIPDGLLTEVALALQNPVWDLSLGRKTCVPSEFIFQGQFANRDDALTAALNLAEQKQRTQDFMVVQGATEGGELLTLNDVPLQFGQHKRYRDRQVTLINEG
>NZ_CP016044.1|WP_069579040.1|2758009_2759053_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNNALKNTRIEFHILQSFPVTCLNRDDVGAPKTAVVGGVTRARVSSQCWKRQVRLAMQAFGVKLGIRTKKVADLVTEHCIKLGAAQEPAQACASKIAELLADDTLLFISDSEAEALADYAREQEFDSNKIKDKELAKRAKKNLNPALDALDIALFGRMVAKAAEMNVEAAASFSHAISTHKVANEVEFFTALDDRQEEPGSAHMGSLEFNSATYYRYISLDLGQLADTMGGDELNKEQLKQAIAAFTQALFVAVPAARQTTQSGASPWEFAKVLVRKGQRLQVPFDEPVKAAGHGFLAPSVAALKGYISKKEVLTGSLFGKLGDYEWGEDETFSLDHLIAKLQNHVE
>NZ_CP016044.1|WP_069579041.1|2759065_2759701_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYASVLRLDRAAVKALRVTDLYSLHRVVYALFEDVRSEMRKQASVPSGIQWVDKGGDHRCRQILLLSDRLPQAGEYGEVESRPLPDDFLSHRHYRFAVTVSPTRRDNQSRQLKPVKGREAIADWFIERAATNWGFYIDSERIQVDDVRVAQFKGKAERAITLQQATLSGYLTVTDPERFALSVASGVGRGRAFGCGLLQVVPLIEHPLF
>NZ_CP016044.1|WP_069579044.1|2759697_2760222_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNTQPQASQRREVDFVAYLCQRCQKDKGFAARLRRADNPATEYQSWDTLAAFGINLEWAEERQPFALIAAAVARSDQACNGSLPLGQAIALAFSEGRESDQAKARLRRLLACDDTEEVCRILRPLLTLIRSRVNQPLDYAALLVDLRWFHRSADRAKARWAQQFYGRQEKELTA
>NZ_CP016044.1|WP_069579046.1|2760218_2761703_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEHRFNLIDEPWIPVTDNGRVGLKDIFTHPEYRALGGNPVQKAAILKLLQAIAQAASTPQDLKAWQQLGWQGMAERVCRYLAQWNDRFYLYGPIPFLQMPAIAKAAIKSFGTVQPDVATGNTTVLTQSQAERPLDDGERALLLITQMGFALGGKKTDNSVVLTPGYSGKSNDKGKPSTGKPGPSVAYMGLLHNYCLGTSLLESIWLNLFTEAEIVDLTLYPSGVGIAPWEQMPEGEDCHVAKQLKGSLMGRLVPLCRFCLLADEGLHYSEGIAHGNYKEGVFDPSVAIDISGKEPKVRWADPERRPWRELTSLLGFIDQGGKSLDCYQIKLALRKAKKQVAHFAIWSGGLRVSSNAGEQYASGSDDMVESLCWLSPSHVNALWFNRFQTEIGQLDGLAKTLYGCVMGYYKAQMVDGESLAKQASNLFWQLCERQSQALIDGCDEVKARQQLRRQFARYTSQVFDQFCPHQTARQMDAWAKTKPNLSAYLQQEQS
>NZ_CP016044.1|WP_069579047.1|2761706_2764352_-|CRISPR-associated-helicase-Cas3'
MINRRRKATNTESAIAAVPFELCPAKTYKDRQGVPHLGRSVFNHCQIVGQTAKALLERIPETIRHPLFPRGSALQAALHDIGKISPTFFLKLQCAVEGEDSPWLQRMPQFRGIQEREWGGHAGVSELALAAITSNPFVPSVAGQHHGFNPPEVMLTADAPPLGGASWQTERCKLVEALQRAMGEEIPVITTPAQARILAGLTTVADWIGSGHHFEDPATPWQPRIEQALDDAGFVLPQVRNGLTFGDIFRAEDGTPYQPNEPQQLLHQYSQGVGVYVLEAPMGLGKTEAALYAAYKMLEEGRATGIYFALPTQLTSNKLLDRFNGYLKQILTEESPHRHSLLLHGNAWLVNHALGEEGKPGRSWFDSAKRGLLAPFAVGTLDQALMAAMNVKHGFVRAFGLVGKVVILDEVHSYDAYTGVILDELIRLLRTLHCTVIILSATLSQARRSELLGQPAQRDAYPLISVSPGITPSPLQELSVTPEEPRTVYLQCKAMADQTVLEEVLKRASQGQQVLWIENTVAEAQERYLDLAARAQELGVACGLLHSRFTALHRQKNEAHWVGCYGKVGRAARREQGRILIGTQVLEQSLDIDADFLVSRMAPSDMLFQRLGRLWRHEQTPRPPEAIREAWILAPDLDAARQDPYQAFGATAHVYSPYLLCRSLEVWLAQVKEGRVSLPDHIRTLVESTYRERSEDDAMARWKRELFEGAHRRKGVNTLRQLARLTLSKGGKTLPEAKAQTRYSEQESGDLLLLSGLSLNNHDQATTLTFLDGEQIVIPWHGHRLTPAEWRNRAARVTQHLVSCRLSQLPRPAERLWCQKVGLGHVLYLGHPDQDDAAISIALVATDHQLQAVDGRSAPLSDRLSYRYRDDIGLIITQYKE
>NZ_CP016044.1|WP_012849316.1|2765768_2766446_+|DUF1345-domain-containing-protein
MNPRLTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPFFSPAIRLMFGWNVFAWLYILFLLTKIVNRRAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQTSGHQKILHFIITGSTLISSWLLLPMGFTMHYAHVFYSNPKTDDPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMTILGLSINVCASLF
>NZ_CP016044.1|WP_012849317.1|2766596_2767304_+|GntR-family-transcriptional-regulator
METVSTVELAKEQLNQWIDNGMIGAGGKLPSERELSELLGIKRMTLRQALLNLEGESKIFRKDRRGWFVALPRFNYNPNEATSYKQAAIEQGRVPSWGYLEKQRVLDAPPRMQSLLQADPQQGLFRIRGWGALDGHKVFYHETYINPLVAPDFIDHLGESAFADVWSQHYQRPTVTRHLAFKPTRLNAEASRVIGGNCTTPAIQVEKFRADMLRNILQIDIEYWRFESVDFYIDL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016044_1	1.2\|1745772\|32\|NZ_CP016044\|CRISPRCasFinder	1745772-1745803	32	NZ_CP023707	Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence	32226-32257	1	0.969
NZ_CP016044_1	1.3\|1745833\|32\|NZ_CP016044\|CRISPRCasFinder	1745833-1745864	32	NC_017318	Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence	32376-32407	1	0.969
NZ_CP016044_3	3.3\|2755787\|32\|NZ_CP016044\|CRT	2755787-2755818	32	NC_017318	Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence	36223-36254	2	0.938
NZ_CP016044_3	3.10\|2755787\|33\|NZ_CP016044\|CRISPRCasFinder,PILER-CR	2755787-2755819	33	NC_017318	Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence	36222-36254	2	0.939
NZ_CP016044_1	1.11\|1745830\|36\|NZ_CP016044\|CRT,PILER-CR	1745830-1745865	36	NC_017318	Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence	32373-32408	3	0.917
NZ_CP016044_1	1.10\|1745769\|36\|NZ_CP016044\|CRT,PILER-CR	1745769-1745804	36	NZ_CP023707	Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence	32225-32260	4	0.889
NZ_CP016044_1	1.5\|1745955\|32\|NZ_CP016044\|CRISPRCasFinder	1745955-1745986	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	132297-132328	6	0.812
NZ_CP016044_1	1.5\|1745955\|32\|NZ_CP016044\|CRISPRCasFinder	1745955-1745986	32	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	408388-408419	7	0.781
NZ_CP016044_1	1.5\|1745955\|32\|NZ_CP016044\|CRISPRCasFinder	1745955-1745986	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	923795-923826	7	0.781
NZ_CP016044_1	1.1\|1745711\|32\|NZ_CP016044\|CRISPRCasFinder	1745711-1745742	32	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	247287-247318	8	0.75
NZ_CP016044_3	3.3\|2755787\|32\|NZ_CP016044\|CRT	2755787-2755818	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	163182-163213	8	0.75
NZ_CP016044_3	3.3\|2755787\|32\|NZ_CP016044\|CRT	2755787-2755818	32	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	212504-212535	8	0.75
NZ_CP016044_3	3.7\|2756031\|32\|NZ_CP016044\|CRT	2756031-2756062	32	NC_022765	Bacillus phage Riggi, complete genome	1001-1032	8	0.75
NZ_CP016044_3	3.7\|2756031\|32\|NZ_CP016044\|CRT	2756031-2756062	32	MT422786	Bacillus phage Novomoskovsk, complete genome	1033-1064	8	0.75
NZ_CP016044_3	3.10\|2755787\|33\|NZ_CP016044\|CRISPRCasFinder,PILER-CR	2755787-2755819	33	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	163181-163213	8	0.758
NZ_CP016044_3	3.10\|2755787\|33\|NZ_CP016044\|CRISPRCasFinder,PILER-CR	2755787-2755819	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	212503-212535	8	0.758
NZ_CP016044_1	1.4\|1745894\|32\|NZ_CP016044\|CRISPRCasFinder	1745894-1745925	32	MG251388	Pseudomonas phage Psp6, complete genome	20740-20771	9	0.719
NZ_CP016044_1	1.5\|1745955\|32\|NZ_CP016044\|CRISPRCasFinder	1745955-1745986	32	NC_003904	Streptomyces coelicolor A3(2) plasmid SCP2, complete sequence	21906-21937	9	0.719
NZ_CP016044_3	3.1\|2755665\|32\|NZ_CP016044\|CRT	2755665-2755696	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1011591-1011622	9	0.719
NZ_CP016044_3	3.1\|2755665\|32\|NZ_CP016044\|CRT	2755665-2755696	32	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	330338-330369	9	0.719
NZ_CP016044_3	3.1\|2755665\|32\|NZ_CP016044\|CRT	2755665-2755696	32	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	119712-119743	9	0.719
NZ_CP016044_3	3.6\|2755970\|32\|NZ_CP016044\|CRT	2755970-2756001	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	12293-12324	9	0.719
NZ_CP016044_3	3.3\|2755787\|32\|NZ_CP016044\|CRT	2755787-2755818	32	CP054924	Verrucosispora sp. NA02020 plasmid unnamed, complete sequence	64285-64316	10	0.688
NZ_CP016044_3	3.13\|2755970\|33\|NZ_CP016044\|CRISPRCasFinder,PILER-CR	2755970-2756002	33	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	12292-12324	10	0.697
NZ_CP016044_1	1.5\|1745955\|32\|NZ_CP016044\|CRISPRCasFinder	1745955-1745986	32	NZ_CP023073	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence	28424-28455	11	0.656

1. spacer 1.2|1745772|32|NZ_CP016044|CRISPRCasFinder matches to NZ_CP023707 (Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence) position: , mismatch: 1, identity: 0.969

gcctaacggctgctctcgatggtagctccctc	CRISPR spacer
gccttacggctgctctcgatggtagctccctc	Protospacer
**** ***************************

2. spacer 1.3|1745833|32|NZ_CP016044|CRISPRCasFinder matches to NC_017318 (Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence) position: , mismatch: 1, identity: 0.969

agtacaatagacaagccgccagaccatgccgg	CRISPR spacer
agtacaataaacaagccgccagaccatgccgg	Protospacer
*********.**********************

3. spacer 3.3|2755787|32|NZ_CP016044|CRT matches to NC_017318 (Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence) position: , mismatch: 2, identity: 0.938

caattcgtcgggccaccacgatcggcgggatg	CRISPR spacer
caattcgtcgggccaccacgatcagcaggatg	Protospacer
***********************.**.*****

4. spacer 3.10|2755787|33|NZ_CP016044|CRISPRCasFinder,PILER-CR matches to NC_017318 (Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence) position: , mismatch: 2, identity: 0.939

caattcgtcgggccaccacgatcggcgggatgg	CRISPR spacer
caattcgtcgggccaccacgatcagcaggatgg	Protospacer
***********************.**.******

5. spacer 1.11|1745830|36|NZ_CP016044|CRT,PILER-CR matches to NC_017318 (Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence) position: , mismatch: 3, identity: 0.917

gacagtacaatagacaagccgccagaccatgccggg	CRISPR spacer
tccagtacaataaacaagccgccagaccatgccggg	Protospacer
  **********.***********************

6. spacer 1.10|1745769|36|NZ_CP016044|CRT,PILER-CR matches to NZ_CP023707 (Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence) position: , mismatch: 4, identity: 0.889

gacgcctaacggctgctctcgatggtagctccctcg	CRISPR spacer
ctagccttacggctgctctcgatggtagctccctcg	Protospacer
   **** ****************************

7. spacer 1.5|1745955|32|NZ_CP016044|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 6, identity: 0.812

agccaccggccagggcatcctcg--atggtgacg	CRISPR spacer
cgccaccggccagcgcatcgtcgacatggtgt--	Protospacer
 ************ ***** ***  ******

8. spacer 1.5|1745955|32|NZ_CP016044|CRISPRCasFinder matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 7, identity: 0.781

agccac-cggccagggcatcctcgatggtgacg	CRISPR spacer
-gcagcacggccagggcctcctcgttggtgcca	Protospacer
 ** .* ********** ****** ***** *.

9. spacer 1.5|1745955|32|NZ_CP016044|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 7, identity: 0.781

agccaccggccagggcatcctcgatggtgacg	CRISPR spacer
ggccaccgcccaggccatcctcgacgtcgccg	Protospacer
.******* ***** *********.* .* **

10. spacer 1.1|1745711|32|NZ_CP016044|CRISPRCasFinder matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 8, identity: 0.75

atatcagctaccagataggcgggataatccgt	CRISPR spacer
atatcagctacctgataggcaggaatattgaa	Protospacer
************ *******.***  **. .

11. spacer 3.3|2755787|32|NZ_CP016044|CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.75

caattcgtcgggccaccacgatcggcgggatg	CRISPR spacer
gccttcatcgggccgccacgatcggcgtgcag	Protospacer
   ***.*******.************ *  *

12. spacer 3.3|2755787|32|NZ_CP016044|CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.75

caattcgtcgggccaccacgatcggcgggatg	CRISPR spacer
gccttcatcgggccgccacgatcggcgtgcag	Protospacer
   ***.*******.************ *  *

13. spacer 3.7|2756031|32|NZ_CP016044|CRT matches to NC_022765 (Bacillus phage Riggi, complete genome) position: , mismatch: 8, identity: 0.75

aggccatcaacaaagtaaaagagccatctagg	CRISPR spacer
actcagtcaacaaaataaaagagccacctcag	Protospacer
*  * .********.***********.** .*

14. spacer 3.7|2756031|32|NZ_CP016044|CRT matches to MT422786 (Bacillus phage Novomoskovsk, complete genome) position: , mismatch: 8, identity: 0.75

aggccatcaacaaagtaaaagagccatctagg	CRISPR spacer
actcagtcaacaaaataaaagagccacctcag	Protospacer
*  * .********.***********.** .*

15. spacer 3.10|2755787|33|NZ_CP016044|CRISPRCasFinder,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.758

caattcgtcgggccaccacgatcggcgggatgg	CRISPR spacer
gccttcatcgggccgccacgatcggcgtgcagg	Protospacer
   ***.*******.************ *  **

16. spacer 3.10|2755787|33|NZ_CP016044|CRISPRCasFinder,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

caattcgtcgggccaccacgatcggcgggatgg	CRISPR spacer
gccttcatcgggccgccacgatcggcgtgcagg	Protospacer
   ***.*******.************ *  **

17. spacer 1.4|1745894|32|NZ_CP016044|CRISPRCasFinder matches to MG251388 (Pseudomonas phage Psp6, complete genome) position: , mismatch: 9, identity: 0.719

tgacg-accgttgacgtcgattaccgtgttgtt	CRISPR spacer
-atcgcaccgttggcgtcgattaccgcgtccag	Protospacer
 . ** *******.************.**.

18. spacer 1.5|1745955|32|NZ_CP016044|CRISPRCasFinder matches to NC_003904 (Streptomyces coelicolor A3(2) plasmid SCP2, complete sequence) position: , mismatch: 9, identity: 0.719

agccaccggccagggcatcctcgatggtgacg-------	CRISPR spacer
agtcaccggccggggcatcctcg-------cgcgcccgt	Protospacer
**.********.***********       **

19. spacer 3.1|2755665|32|NZ_CP016044|CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgaagataacaaccgagaccacgggaaaga	CRISPR spacer
caggaagataacaagcgtgaccacggcgatgg	Protospacer
   *********** ** ******** .* *.

20. spacer 3.1|2755665|32|NZ_CP016044|CRT matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 9, identity: 0.719

gtcgaagataacaaccgagaccacgggaaaga	CRISPR spacer
gtcaaagataacaaccgaaaccaaacctgtga	Protospacer
***.**************.**** .   . **

21. spacer 3.1|2755665|32|NZ_CP016044|CRT matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 9, identity: 0.719

gtcgaagataacaaccgagaccacgggaaaga	CRISPR spacer
gtcaaagataacaaccgaaaccaaacctgtga	Protospacer
***.**************.**** .   . **

22. spacer 3.6|2755970|32|NZ_CP016044|CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccactggagtgagctgaaagcggccatcatgg	CRISPR spacer
tgatcttagtgagctggaagcggccaccatga	Protospacer
. *..  *********.*********.****.

23. spacer 3.3|2755787|32|NZ_CP016044|CRT matches to CP054924 (Verrucosispora sp. NA02020 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

caattcgtcgggccaccacgatcggcgggatg	CRISPR spacer
tcttgacccggaccaccacgatcggcgcgata	Protospacer
.  *   .***.*************** ***.

24. spacer 3.13|2755970|33|NZ_CP016044|CRISPRCasFinder,PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ccactggagtgagctgaaagcggccatcatgga	CRISPR spacer
tgatcttagtgagctggaagcggccaccatgag	Protospacer
. *..  *********.*********.****..

25. spacer 1.5|1745955|32|NZ_CP016044|CRISPRCasFinder matches to NZ_CP023073 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence) position: , mismatch: 11, identity: 0.656

agccaccggccagggcatcctcgatggtgacg	CRISPR spacer
ctttaccggcccgggcatgctcgatggcttgt	Protospacer
  ..******* ****** ********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

490914 : 528886

Salmonella_phage(82.05%)

terminase,integrase,tRNA,plate,head,capsid,lysis,tail,portal

attL 491798:491853|attR 522590:522645

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012847325.1\|490914_491577_+	fructose-6-phosphate aldolase	A0A0E3EPH4	Synechococcus_phage	8.2e-25	31.8
491798:491853	attL	NA	NA	NA	NA
WP_133176303.1\|491980_493453_-	hypothetical protein	NA	NA	NA	NA
WP_069578110.1\|493455_494469_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	4.1e-116	59.6
WP_071890235.1\|494695_495310_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.0e-38	43.1
WP_068871156.1\|495411_495648_+	regulator	NA	NA	NA	NA
WP_069578112.1\|495682_496192_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	8.1e-81	88.8
WP_071890237.1\|496368_496710_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.0e-48	83.2
WP_069578116.1\|496777_497011_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	1.2e-20	72.7
WP_133176304.1\|497010_497229_+	hypothetical protein	NA	NA	NA	NA
WP_071890240.1\|497228_497456_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	2.1e-33	89.3
WP_071890243.1\|497452_498313_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	9.7e-127	79.0
WP_069578121.1\|498303_500685_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	88.2
WP_069578123.1\|500841_501030_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.0e-21	79.0
WP_071890246.1\|501347_501893_+	hypothetical protein	NA	NA	NA	NA
WP_069578125.1\|501937_502960_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.9e-178	92.1
WP_069578126.1\|502959_504726_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	93.5
WP_069578127.1\|504867_505701_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	3.6e-110	76.9
WP_069578129.1\|505716_506778_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.7e-187	95.8
WP_069578130.1\|506781_507435_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.7e-107	94.9
WP_069578131.1\|507528_507993_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.1e-71	85.7
WP_068871195.1\|507992_508196_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	4.2e-33	97.0
WP_068871198.1\|508199_508415_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	93.0
WP_069578133.1\|508395_508911_+	lysozyme	E5G6N1	Salmonella_phage	2.2e-70	74.3
WP_069578134.1\|508907_509336_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	9.2e-54	80.3
WP_068871205.1\|509431_509863_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.9e-71	93.0
WP_069578135.1\|509855_510302_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.8e-61	82.9
WP_069578137.1\|510298_510964_-	hypothetical protein	NA	NA	NA	NA
WP_069578138.1\|511052_511631_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.5e-96	88.5
WP_069578139.1\|511627_511987_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	7.7e-54	89.7
WP_069578141.1\|511973_512882_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	3.5e-143	89.1
WP_069578142.1\|512874_513480_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.9e-108	91.5
WP_084822820.1\|513476_514994_+	hypothetical protein	A0A1S6KZZ8	Salmonella_phage	1.9e-154	53.0
WP_069578143.1\|514996_515524_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	2.2e-28	43.5
WP_069578144.1\|515636_516809_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.3e-210	93.3
WP_069578146.1\|516818_517334_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.8e-88	94.7
WP_068871223.1\|517387_517690_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	4.7e-44	97.0
WP_032680256.1\|517704_517824_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.7e-13	89.7
WP_069578147.1\|517816_520618_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	4.4e-269	59.9
WP_069578148.1\|520614_521100_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.7e-67	82.6
WP_069578150.1\|521096_522194_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.8e-173	86.9
WP_032681944.1\|522262_522478_+	late control protein B	Q53ZE7	Salmonella_virus	9.4e-23	72.2
WP_012847326.1\|522809_523322_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
522590:522645	attR	NA	NA	NA	NA
WP_015460877.1\|523424_525260_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_012847328.1\|525495_527244_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.1e-76	40.7
WP_005295814.1\|527431_527647_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_069578151.1\|527860_528886_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.9e-106	58.3

DBSCAN-SWA_2

866491 : 930143

Streptococcus_phage(12.5%)

integrase,tRNA,transposase

attL 852832:852848|attR 940250:940266

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
852832:852848	attL	NA	NA	NA	NA
WP_012847627.1\|866491_867811_+\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	2.2e-05	23.0
WP_069578245.1\|867843_868173_+	cytochrome c	NA	NA	NA	NA
WP_012847629.1\|868230_868491_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_012847630.1\|868477_868678_-	YaeP family protein	NA	NA	NA	NA
WP_012847632.1\|868897_869446_+	YaeQ family protein	NA	NA	NA	NA
WP_012847633.1\|869447_869864_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_012847634.1\|869965_870643_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_012847635.1\|870664_870925_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.9e-17	51.2
WP_015461014.1\|871050_871902_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012847637.1\|872078_872702_+	acid phosphatase AphA	NA	NA	NA	NA
WP_012847638.1\|872733_873885_-	L-threonine dehydrogenase	NA	NA	NA	NA
WP_012847639.1\|874155_874494_-	thiosulfate sulfurtransferase PspE	NA	NA	NA	NA
WP_015461015.1\|874690_875203_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_012847641.1\|875219_876644_-	membrane-bound lytic murein transglycosylase MltF	I1VXB7	Halocynthia_phage	3.4e-12	34.5
WP_109729052.1\|876924_880815_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	2.6e-134	61.3
WP_015461017.1\|881300_882716_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.9e-16	26.2
WP_109729053.1\|882730_883450_+	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_012847645.1\|883453_884794_+	two-component system response regulator GlrR	NA	NA	NA	NA
WP_015461019.1\|884944_886567_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	6.1e-90	35.6
WP_005283058.1\|886580_886919_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_012847647.1\|887166_887748_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.1e-12	28.2
WP_012847648.1\|887792_888560_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_012847649.1\|888530_889253_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_012847650.1\|889560_890607_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_069578248.1\|890672_892127_-	amino acid permease	NA	NA	NA	NA
WP_012847652.1\|892178_893630_-	amino acid permease	NA	NA	NA	NA
WP_012847653.1\|893799_895512_-	glutamate decarboxylase	NA	NA	NA	NA
WP_069578249.1\|896235_897294_+	DNA polymerase IV	NA	NA	NA	NA
WP_012847656.1\|897393_898647_+	peptidase T	NA	NA	NA	NA
WP_012847657.1\|898643_900005_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_015461025.1\|900138_900672_+	outer membrane lipoprotein Blc	A0A1W6JNX6	Morganella_phage	8.5e-49	54.8
WP_015461026.1\|900760_902221_-	beta-Ala-His dipeptidase	NA	NA	NA	NA
WP_012847660.1\|902636_903095_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_069578251.1\|903278_904544_+	esterase FrsA	NA	NA	NA	NA
WP_069578253.1\|904605_905007_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_012847663.1\|905201_906308_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-58	41.6
WP_012847664.1\|906317_907571_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.3e-91	47.2
WP_012847665.1\|907641_908673_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_069578255.1\|909128_910325_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.6e-130	55.7
WP_069578256.1\|910599_910842_+\|integrase	integrase	Q7M297	Enterobacteria_phage	3.4e-21	76.3
WP_071890249.1\|910897_914149_+	hypothetical protein	NA	NA	NA	NA
WP_109729013.1\|914284_915128_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.8e-22	48.7
WP_069578257.1\|915267_915888_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.9e-36	42.8
WP_045341144.1\|916516_917395_+	DUF3644 domain-containing protein	NA	NA	NA	NA
WP_084822824.1\|917761_919570_-	hypothetical protein	NA	NA	NA	NA
WP_069578261.1\|921767_922991_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_069578262.1\|923107_925309_+	hypothetical protein	NA	NA	NA	NA
WP_015683265.1\|925308_927015_+	hypothetical protein	NA	NA	NA	NA
WP_109729054.1\|927833_928998_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.7e-73	48.5
WP_156776830.1\|929031_930143_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.8e-06	25.0
940250:940266	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1719275 : 1771186

Escherichia_phage(30.56%)

terminase,holin,integrase,capsid,transposase,portal

attL 1710770:1710785|attR 1788272:1788287

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1710770:1710785	attL	NA	NA	NA	NA
WP_069579640.1\|1719275_1719632_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	9.8e-17	43.0
WP_069578521.1\|1720024_1721119_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.2e-62	42.3
WP_015871361.1\|1721105_1721354_-	excisionase	NA	NA	NA	NA
WP_069578523.1\|1721453_1721732_+	Killer protein	A0A2L1IV28	Escherichia_phage	1.8e-26	58.7
WP_069578525.1\|1721731_1722019_+	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	5.3e-21	51.1
WP_071890273.1\|1722101_1722761_-	hypothetical protein	NA	NA	NA	NA
WP_069578527.1\|1723270_1724029_-	hypothetical protein	A0A0N6WET9	Escherichia_phage	5.8e-43	73.4
WP_069578529.1\|1724778_1726164_+	hypothetical protein	NA	NA	NA	NA
WP_069578531.1\|1726357_1726858_-	AAA family ATPase	NA	NA	NA	NA
WP_069578534.1\|1727121_1727589_-	hypothetical protein	NA	NA	NA	NA
WP_069578536.1\|1727618_1727768_-	potassium transporter 7	NA	NA	NA	NA
WP_069578538.1\|1727831_1728134_-	hypothetical protein	NA	NA	NA	NA
WP_069578539.1\|1728152_1729223_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	4.5e-81	55.7
WP_069578540.1\|1731884_1732187_-	hypothetical protein	NA	NA	NA	NA
WP_069578542.1\|1732352_1732826_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	3.6e-67	78.1
WP_069578543.1\|1733479_1734154_+	hypothetical protein	NA	NA	NA	NA
WP_069578544.1\|1734155_1734986_+	ATP-binding protein	NA	NA	NA	NA
WP_069578545.1\|1735188_1735485_-	hypothetical protein	NA	NA	NA	NA
WP_109729013.1\|1735936_1736781_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.8e-22	48.7
WP_071890277.1\|1736826_1737828_-	ParA family protein	H2BD62	Pseudomonas_phage	1.7e-50	35.8
WP_078057774.1\|1738001_1738631_-	helix-turn-helix domain-containing protein	A0A0N7BTS4	Escherichia_phage	3.1e-66	57.9
WP_071890280.1\|1738772_1738982_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	7.2e-12	52.3
WP_069578549.1\|1739046_1739403_+	hypothetical protein	NA	NA	NA	NA
WP_069578550.1\|1739399_1739630_+	porin	NA	NA	NA	NA
WP_069578552.1\|1739661_1739922_+	hypothetical protein	NA	NA	NA	NA
WP_069578554.1\|1740123_1741062_+	helix-turn-helix domain-containing protein	A0A1R3Y5R9	Salmonella_virus	3.2e-30	66.0
WP_069578555.1\|1741058_1742441_+	AAA family ATPase	A0A1V0E5J4	Salmonella_phage	1.0e-162	64.8
WP_069578556.1\|1742470_1742818_+	hypothetical protein	NA	NA	NA	NA
WP_069578557.1\|1742927_1743572_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.0e-16	33.0
WP_069578558.1\|1743574_1743877_+	DUF1364 domain-containing protein	A0A2I7R6Q3	Vibrio_phage	3.5e-15	52.9
WP_069578559.1\|1744168_1744414_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_015871333.1\|1744550_1744859_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	9.0e-43	90.2
WP_015871332.1\|1744848_1745178_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.3e-39	88.5
WP_071890285.1\|1746585_1747347_+	hypothetical protein	A0A0P0ZDY7	Stx2-converting_phage	1.2e-40	74.3
WP_071890287.1\|1747580_1748561_-	hypothetical protein	NA	NA	NA	NA
WP_133176305.1\|1748557_1749079_-	hypothetical protein	NA	NA	NA	NA
WP_069578561.1\|1749401_1750220_+	hypothetical protein	NA	NA	NA	NA
WP_133176306.1\|1750453_1750852_+	hypothetical protein	NA	NA	NA	NA
WP_069578562.1\|1750969_1751200_+	hypothetical protein	NA	NA	NA	NA
WP_069578563.1\|1751174_1751504_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012848472.1\|1751589_1751928_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	3.5e-24	52.9
WP_084822832.1\|1751930_1752482_+	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	1.3e-71	70.6
WP_069579643.1\|1752662_1753445_+	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	5.0e-29	60.2
WP_069578564.1\|1753547_1754093_+	DUF2514 family protein	A0A291AXG6	Shigella_phage	4.2e-11	33.5
WP_069578566.1\|1754449_1755226_+	hypothetical protein	G8C7P2	Escherichia_phage	9.0e-07	49.3
WP_084822833.1\|1755203_1756880_+\|terminase	terminase	A0A2R2Z350	Escherichia_phage	1.2e-229	70.1
WP_069578567.1\|1756876_1758991_+\|portal	portal protein	A0A088CE71	Shigella_phage	1.8e-222	63.2
WP_069578568.1\|1759063_1759345_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	7.0e-18	49.5
WP_069578569.1\|1759334_1759586_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_069578570.1\|1759863_1760865_+	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	8.0e-32	34.0
WP_069578572.1\|1760882_1762121_+\|capsid	N4-gp56 family major capsid protein	A0A088CC32	Shigella_phage	3.0e-169	72.0
WP_069578573.1\|1762179_1762575_+	hypothetical protein	V5UT93	Shigella_phage	4.6e-15	38.5
WP_069578574.1\|1762616_1763060_+	hypothetical protein	A0A2L1IV43	Escherichia_phage	2.7e-24	46.5
WP_069578575.1\|1763059_1763641_+	hypothetical protein	NA	NA	NA	NA
WP_069578577.1\|1763640_1764303_+	hypothetical protein	Q08J85	Stx2-converting_phage	8.1e-65	55.5
WP_069578579.1\|1766610_1768239_+	hypothetical protein	A0A088CBK0	Shigella_phage	9.6e-160	53.2
WP_069578580.1\|1768282_1769824_+	DUF1983 domain-containing protein	A0A2L1IV54	Escherichia_phage	5.3e-75	41.7
WP_069578582.1\|1769820_1770192_+	hypothetical protein	A0A1I9KFI0	Aeromonas_phage	8.1e-06	33.3
WP_069578583.1\|1770202_1770778_+	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	4.7e-45	51.3
WP_069578585.1\|1770805_1771186_+	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	2.3e-24	47.6
1788272:1788287	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1959372 : 1969316

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045474762.1\|1959372_1959861_-	endopeptidase	S5MM68	Bacillus_phage	2.2e-11	38.5
WP_012848646.1\|1960004_1960772_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	3.4e-06	26.4
WP_012848648.1\|1961775_1961979_-	protein DsrB	NA	NA	NA	NA
WP_005285818.1\|1962068_1962365_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.4e-13	41.1
WP_069578659.1\|1962369_1964757_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.1e-06	25.8
WP_012848650.1\|1964771_1965755_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	42.6
WP_106120997.1\|1965940_1965985_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_015461533.1\|1966147_1966504_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005293643.1\|1966547_1966745_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_034163363.1\|1966841_1967384_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	7.4e-16	34.1
WP_015461535.1\|1967387_1969316_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-127	37.3

DBSCAN-SWA_5

2067718 : 2075350

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012848758.1\|2067718_2068498_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	58.2
WP_015461589.1\|2068701_2069622_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	5.0e-105	70.4
WP_012848760.1\|2069618_2070878_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.5e-120	57.3
WP_069578692.1\|2070874_2071513_+	aldolase	A0A077SK32	Escherichia_phage	3.1e-69	64.0
WP_069578693.1\|2071515_2072292_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_012848763.1\|2072366_2073737_+	GntP family transporter	NA	NA	NA	NA
WP_012848764.1\|2073830_2074190_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.0e-17	49.0
WP_012848765.1\|2074384_2075350_+	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	9.1e-41	32.5

DBSCAN-SWA_6

2376014 : 2383840

Escherichia_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012849023.1\|2376014_2376629_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	4.7e-27	38.1
WP_034168058.1\|2376684_2377545_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	1.5e-23	34.2
WP_012849025.1\|2377546_2378164_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.1e-79	62.1
WP_015461824.1\|2378174_2380622_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.5e-220	50.6
WP_012849028.1\|2381083_2382376_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.8e-92	44.2
WP_069578834.1\|2382496_2383840_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.8e-74	39.1

DBSCAN-SWA_7

2612264 : 2755140

150

Enterobacteria_phage(29.07%)

terminase,holin,integrase,tRNA,portal,protease,head,capsid,lysis,tail,transposase,plate

attL 2706667:2706692|attR 2752761:2752786

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015461939.1\|2612264_2613077_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_069578959.1\|2613091_2614102_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012849246.1\|2614210_2615338_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.8e-19	29.6
WP_078057746.1\|2615564_2615924_+	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_069578964.1\|2616072_2616570_+	acid resistance repetitive basic protein Asr	NA	NA	NA	NA
WP_012849249.1\|2616641_2617388_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015461944.1\|2617514_2618726_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_069578966.1\|2618898_2620923_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_012849252.1\|2621059_2621341_-	YfcL family protein	NA	NA	NA	NA
WP_069578968.1\|2621379_2621928_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_012849254.1\|2622028_2622829_-	TSUP family transporter	NA	NA	NA	NA
WP_071890320.1\|2623132_2624587_-	cell wall hydrolase	NA	NA	NA	NA
WP_041692883.1\|2625169_2625472_+	hypothetical protein	NA	NA	NA	NA
WP_051065053.1\|2625721_2626237_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012849259.1\|2626233_2627721_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012849260.1\|2627790_2628282_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_069578972.1\|2628381_2629602_+	type VI secretion protein	NA	NA	NA	NA
WP_015461951.1\|2629610_2630087_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012849263.1\|2630090_2631932_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_069578974.1\|2631928_2632954_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_081604803.1\|2633072_2635685_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	5.1e-86	32.4
WP_015461955.1\|2635684_2637670_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.0e-46	28.3
WP_012849267.1\|2637764_2638067_+	type VI secretion protein	NA	NA	NA	NA
WP_069578976.1\|2639133_2639775_+	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_069578978.1\|2639873_2641262_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_069578980.1\|2641258_2641909_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_069578982.1\|2641905_2645688_+	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_109615053.1\|2645819_2646650_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_012849275.1\|2647840_2648773_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_015461963.1\|2648983_2649529_+	endonuclease SmrB	NA	NA	NA	NA
WP_012849277.1\|2649579_2650056_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_015461965.1\|2650447_2650744_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_012849280.1\|2651141_2652458_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_015461477.1\|2652778_2653237_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	5.9e-14	31.5
WP_012849281.1\|2653421_2654189_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_084822839.1\|2654259_2655474_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_012849283.1\|2655470_2655974_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_012849284.1\|2655970_2656525_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_069578984.1\|2656521_2658492_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_015461968.1\|2658488_2658977_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_012849287.1\|2658976_2659210_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_015461969.1\|2659206_2659959_-	heme ABC transporter permease	NA	NA	NA	NA
WP_069578986.1\|2660134_2660794_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_015461970.1\|2660790_2661414_-	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2H4PQG7	Staphylococcus_phage	4.7e-06	23.2
WP_034168305.1\|2662175_2662385_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_069578987.1\|2662396_2663386_+	HlyD family secretion protein	NA	NA	NA	NA
WP_069578988.1\|2663394_2665059_+	FUSC family protein	NA	NA	NA	NA
WP_012849295.1\|2665615_2666197_-\|tail	tail protein	A0A218M4J2	Erwinia_phage	1.3e-42	48.4
WP_015461973.1\|2666199_2668356_-\|tail	tail fiber protein	A0A2D1UII2	Escherichia_phage	2.6e-27	49.2
WP_071881868.1\|2668416_2669289_-	hypothetical protein	NA	NA	NA	NA
WP_014526501.1\|2669468_2670131_-	Ail/Lom family outer membrane beta-barrel protein	A0A2L1IV31	Escherichia_phage	2.1e-12	28.3
WP_071840979.1\|2670184_2671186_-	hypothetical protein	NA	NA	NA	NA
WP_015461975.1\|2671182_2674278_-	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	52.6
WP_034168787.1\|2674337_2674985_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	2.1e-49	50.0
WP_015461977.1\|2674879_2675614_-\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	1.8e-97	65.3
WP_015461978.1\|2675649_2676348_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.2e-80	60.3
WP_015461979.1\|2676357_2676687_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.1e-22	47.7
WP_071840980.1\|2676738_2677092_-	hypothetical protein	NA	NA	NA	NA
WP_015461980.1\|2677145_2680079_-\|tail	phage tail tape measure protein	A0A2H4J7J3	uncultured_Caudovirales_phage	3.3e-33	27.9
WP_015461981.1\|2680316_2680655_-	hypothetical protein	NA	NA	NA	NA
WP_015461982.1\|2680664_2681144_-	hypothetical protein	Q6UAX0	Klebsiella_phage	1.6e-25	41.1
WP_015461983.1\|2681189_2681600_-	hypothetical protein	Q6UAX1	Klebsiella_phage	2.2e-36	64.8
WP_015461984.1\|2681603_2681984_-	hypothetical protein	Q7Y405	Yersinia_phage	6.1e-33	49.2
WP_015461985.1\|2681964_2682309_-\|head	phage head closure protein	Q7Y406	Yersinia_phage	2.7e-24	57.8
WP_015461986.1\|2682305_2682635_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.8e-25	55.0
WP_084822840.1\|2682666_2682972_+	hypothetical protein	NA	NA	NA	NA
WP_069578991.1\|2682968_2684192_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	2.1e-196	86.7
WP_069578993.1\|2684204_2685062_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	2.1e-113	72.6
WP_069578994.1\|2685069_2686398_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.9e-185	75.9
WP_041692784.1\|2686397_2688140_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	3.1e-140	45.4
WP_015461993.1\|2688093_2688561_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	2.2e-45	61.0
WP_069578997.1\|2689255_2689720_-\|lysis	lysis protein	G9L6J7	Escherichia_phage	6.5e-45	64.3
WP_084822842.1\|2689787_2690639_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	2.7e-28	58.4
WP_069578998.1\|2690762_2691308_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	1.5e-72	71.2
WP_015462001.1\|2691304_2691586_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	9.4e-15	49.5
WP_014526530.1\|2691582_2691954_-	membrane protein	S4TRS4	Salmonella_phage	1.9e-15	40.9
WP_014526529.1\|2692153_2692432_+	hypothetical protein	NA	NA	NA	NA
WP_069578999.1\|2692666_2693437_-	antitermination protein	Q76H66	Enterobacteria_phage	2.2e-69	51.2
WP_069579001.1\|2693456_2694500_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	1.2e-62	38.7
WP_109579762.1\|2694499_2694718_-	LexA family transcriptional regulator	U5P451	Shigella_phage	3.5e-09	45.6
WP_034168925.1\|2694714_2695530_-	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	2.3e-85	58.7
WP_069579002.1\|2695685_2696081_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	8.9e-35	57.6
WP_069579004.1\|2696080_2698249_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B0V7P0	Salmonella_phage	4.5e-181	46.1
WP_069579006.1\|2698490_2699636_-	replication protein O	A0A1P8DTG2	Proteus_phage	2.3e-35	53.8
WP_015462010.1\|2699635_2699815_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_015462011.1\|2700009_2700549_-	hypothetical protein	NA	NA	NA	NA
WP_015462012.1\|2700626_2700842_-	helix-turn-helix domain-containing protein	K7P6H5	Enterobacteria_phage	3.8e-24	76.1
WP_015462013.1\|2700967_2701669_+	helix-turn-helix transcriptional regulator	K7P7I4	Enterobacteria_phage	2.0e-93	69.8
WP_015462014.1\|2701948_2702464_+	hypothetical protein	NA	NA	NA	NA
WP_015462015.1\|2702746_2703070_+	hypothetical protein	NA	NA	NA	NA
WP_069579007.1\|2703702_2704641_+	exonuclease	A0A1Y0SUG1	Pseudomonas_phage	9.4e-43	33.9
WP_069579008.1\|2704637_2704985_+	hypothetical protein	NA	NA	NA	NA
WP_069579011.1\|2705586_2705859_+	hypothetical protein	A0A077K9V8	Edwardsiella_phage	2.7e-22	57.5
WP_069579012.1\|2705855_2706521_+	morphogenetic protein	A0A077KCB2	Edwardsiella_phage	1.6e-44	45.5
2706667:2706692	attL	NA	NA	NA	NA
WP_052219252.1\|2706672_2707104_+	hypothetical protein	A0A077K9V6	Edwardsiella_phage	1.1e-27	53.2
WP_015462020.1\|2707096_2707702_+	exodeoxyribonuclease VIII	A0A2D1GMH0	Marinobacter_phage	8.0e-11	27.8
WP_015462021.1\|2707701_2708517_+	hypothetical protein	K7PKM7	Enterobacterial_phage	1.6e-75	59.1
WP_015462022.1\|2708522_2708723_+	excisionase	A0A2R2Z2X2	Escherichia_phage	2.5e-14	58.3
WP_015462023.1\|2708706_2709876_-\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	4.7e-185	75.1
WP_069579014.1\|2710305_2711463_+\|integrase	tyrosine-type recombinase/integrase	K7P7E1	Enterobacteria_phage	6.8e-176	78.5
WP_012849295.1\|2711562_2712144_-\|tail	tail protein	A0A218M4J2	Erwinia_phage	1.3e-42	48.4
WP_071890324.1\|2712146_2714303_-\|tail	phage tail protein	A0A2D1UII2	Escherichia_phage	4.0e-28	50.0
WP_069579016.1\|2714376_2715039_-	Ail/Lom family outer membrane beta-barrel protein	A0A2R2Z365	Escherichia_phage	1.9e-13	28.9
WP_071890327.1\|2715092_2716094_-	hypothetical protein	NA	NA	NA	NA
WP_069579018.1\|2716090_2719210_-	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	57.8
WP_071881870.1\|2719250_2719904_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.0e-72	64.2
WP_034162699.1\|2719801_2720539_-\|tail	phage tail protein	A0A0P0ZDT1	Stx2-converting_phage	1.8e-105	70.2
WP_034162700.1\|2720627_2721164_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	7.1e-27	56.4
WP_034162701.1\|2721242_2721941_-\|tail	phage minor tail protein L	A0A0P0ZD44	Stx2-converting_phage	1.3e-92	70.3
WP_014526494.1\|2721956_2722286_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	6.9e-33	56.9
WP_034162702.1\|2722285_2725192_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	1.2e-120	39.2
WP_034168887.1\|2725181_2725508_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.1e-14	43.2
WP_069579019.1\|2725516_2725915_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	3.8e-09	38.0
WP_069579020.1\|2725967_2726738_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.4e-39	43.4
WP_014526489.1\|2726739_2727153_-\|tail	minor tail component of prophage	A5LH34	Enterobacteria_phage	2.2e-20	40.5
WP_014526488.1\|2727149_2727728_-\|tail	tail component of prophage protein	NA	NA	NA	NA
WP_014526487.1\|2727739_2728021_-	hypothetical protein	NA	NA	NA	NA
WP_014526486.1\|2728013_2728337_-	DUF2190 family protein	A5LH31	Enterobacteria_phage	1.1e-30	66.0
WP_109729117.1\|2728429_2730490_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	2.2e-278	72.8
WP_014526543.1\|2730401_2731928_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.5e-183	65.2
WP_014526542.1\|2731927_2732131_-	hypothetical protein	A5LH28	Enterobacteria_phage	7.5e-06	45.7
WP_014526541.1\|2732127_2734221_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	1.0e-294	70.7
WP_014526540.1\|2734220_2734757_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	7.8e-50	59.8
WP_069579021.1\|2735494_2735767_+	hypothetical protein	NA	NA	NA	NA
WP_156776834.1\|2735747_2735897_-	hypothetical protein	NA	NA	NA	NA
WP_034168038.1\|2735998_2736286_-	hypothetical protein	Q8W634	Enterobacteria_phage	9.9e-28	59.8
WP_069579022.1\|2736482_2736881_-	hypothetical protein	NA	NA	NA	NA
WP_084822842.1\|2736880_2737732_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	2.7e-28	58.4
WP_069578998.1\|2737855_2738401_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	1.5e-72	71.2
WP_015462001.1\|2738397_2738679_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	9.4e-15	49.5
WP_014526529.1\|2739245_2739524_+	hypothetical protein	NA	NA	NA	NA
WP_034168911.1\|2739758_2740529_-	antitermination protein	Q76H66	Enterobacteria_phage	1.3e-69	51.6
WP_069579024.1\|2740548_2741592_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	5.4e-63	39.0
WP_109579762.1\|2741591_2741810_-	LexA family transcriptional regulator	U5P451	Shigella_phage	3.5e-09	45.6
WP_034168925.1\|2741806_2742622_-	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	2.3e-85	58.7
WP_069579002.1\|2742777_2743173_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	8.9e-35	57.6
WP_069579004.1\|2743172_2745341_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B0V7P0	Salmonella_phage	4.5e-181	46.1
WP_069579006.1\|2745582_2746728_-	replication protein O	A0A1P8DTG2	Proteus_phage	2.3e-35	53.8
WP_015462010.1\|2746727_2746907_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_015462011.1\|2747101_2747641_-	hypothetical protein	NA	NA	NA	NA
WP_069579025.1\|2747694_2747901_-	transcriptional regulator	U5P445	Shigella_phage	4.8e-16	60.9
WP_071890393.1\|2747988_2748657_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.5e-95	74.3
WP_069579026.1\|2748795_2749119_+	hypothetical protein	NA	NA	NA	NA
WP_069579007.1\|2749751_2750690_+	exonuclease	A0A1Y0SUG1	Pseudomonas_phage	9.4e-43	33.9
WP_069579008.1\|2750686_2751034_+	hypothetical protein	NA	NA	NA	NA
WP_069579011.1\|2751635_2751908_+	hypothetical protein	A0A077K9V8	Edwardsiella_phage	2.7e-22	57.5
WP_069579028.1\|2751904_2752570_+	morphogenetic protein	A0A077KCB2	Edwardsiella_phage	1.2e-44	45.5
WP_069579031.1\|2753448_2754054_+	3'-5' exoribonuclease	A0A067ZJ28	Vibrio_phage	9.5e-12	30.0
2752761:2752786	attR	NA	NA	NA	NA
WP_069579033.1\|2754053_2754854_+	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	1.3e-77	59.1
WP_034165921.1\|2754939_2755140_+	excisionase	K7P7V0	Enterobacteria_phage	3.0e-23	74.2

DBSCAN-SWA_8

2991074 : 2997696

Morganella_phage(33.33%)

integrase

attL 2988913:2988926|attR 2998127:2998140

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2988913:2988926	attL	NA	NA	NA	NA
WP_109729112.1\|2991074_2991668_-	antirepressor protein	A0A1W6JPH8	Morganella_phage	6.3e-61	61.7
WP_069579184.1\|2991681_2992116_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	4.7e-29	52.9
WP_069579185.1\|2992115_2992313_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	2.3e-07	47.2
WP_069579187.1\|2992544_2993276_-	hypothetical protein	NA	NA	NA	NA
WP_078000323.1\|2993289_2993631_-	hypothetical protein	NA	NA	NA	NA
WP_069579669.1\|2993765_2994902_-\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	4.0e-205	92.7
WP_069579189.1\|2995184_2996399_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.7e-124	53.6
WP_069579670.1\|2996838_2997696_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	36.9
2998127:2998140	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3193788 : 3208417

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069579272.1\|3193788_3195369_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-09	32.8
WP_015462241.1\|3195866_3196184_+	acid-activated periplasmic chaperone HdeB	NA	NA	NA	NA
WP_012849694.1\|3196307_3196976_+	transcriptional regulator	NA	NA	NA	NA
WP_069579274.1\|3197138_3199697_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	5.8e-26	24.7
WP_012849696.1\|3199749_3200736_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.0e-31	36.2
WP_071818536.1\|3200787_3201744_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.9e-07	35.6
WP_069579275.1\|3202054_3202693_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	53.0
WP_012849699.1\|3202686_3203451_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-67	53.8
WP_012849700.1\|3203431_3204478_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_012849701.1\|3204481_3204955_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_012849702.1\|3204958_3205690_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_012849703.1\|3205743_3206088_-	cell division protein FtsB	NA	NA	NA	NA
WP_034167940.1\|3206170_3208417_-	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	9.3e-12	26.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016044

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection