CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016501	Streptococcus agalactiae strain WC1535 chromosome, complete genome	2 crisprs	RT,DEDDh,csm6,csn2,cas2,cas1,cas9,DinG,cas3,WYL	1	3	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016501_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016501_1

846807-847108

TypeII

II-A

Consensus_repeat	Method
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder

4 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP016501_1

>merge|NZ_CP016501|1|846807-847108|CRT,PILER-CR,CRISPRCasFinder
ATGATGTCCTAGCATAATAACAGCACAGCTCTAAAACACATATCCTTTTGTTAGGTCAAAAGAAGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGGTTATATGGTCGATATGATTCTACAACATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTGATAGATTTCTTACAAAATGAACGCATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCGTAAGTCGTGCGATGAAACCATTTACTCGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP016501|1|1|846807-847108|CRT
ATGATGTCCTAGCATAATAACAGCACAGCTCTAAAAC	ACATATCCTTTTGTTAGGTCAAAAGAAGA
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGTTATATGGTCGATATGATTCTACAACA
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGATAGATTTCTTACAAAATGAACGCAT
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTAAGTCGTGCGATGAAACCATTTACTCG
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP016501|1|1|846873-847108|PILER-CR
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGTTATATGGTCGATATGATTCTACAACA
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGATAGATTTCTTACAAAATGAACGCAT
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTAAGTCGTGCGATGAAACCATTTACTCG
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP016501|1|1|846873-847108|CRISPRCasFinder
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGTTATATGGTCGATATGATTCTACAACA
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGATAGATTTCTTACAAAATGAACGCAT
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTAAGTCGTGCGATGAAACCATTTACTCG
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016501.1\|WP_000590706.1\|847208_847874_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP016501.1\|WP_000523795.1\|854986_855724_-\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_CP016501.1\|WP_000065321.1\|835268_836372_-\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_CP016501.1\|WP_000323544.1\|854215_854986_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP016501.1\|WP_000914664.1\|855727_856858_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP016501.1\|WP_000653360.1\|853569_854226_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP016501.1\|WP_000621142.1\|839749_840214_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP016501.1\|WP_001241816.1\|856949_857330_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_CP016501.1\|WP_001040087.1\|849069_853182_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_CP016501.1\|WP_001242359.1\|847860_848187_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP016501.1\|WP_000929489.1\|848198_849068_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP016501.1\|WP_001019133.1\|843865_845698_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP016501.1\|WP_000438314.1\|845833_846250_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP016501.1\|WP_070001305.1\|840222_840834_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP016501.1\|WP_000146566.1\|834509_835148_+\|antibiotic-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP016501.1\|WP_000159234.1\|857354_857726_-\|DUF1722-domain-containing-protein	unknown	unknown	gnl\|CDD\|377982
NZ_CP016501.1\|WP_011058334.1\|846382_846553_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_001056394.1\|833187_833799_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP016501.1\|WP_000665410.1\|839315_839750_-\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|234692
NZ_CP016501.1\|WP_000467138.1\|830933_831716_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016501.1\|WP_000590706.1\|847208_847874_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_CP016501.1\|WP_000523795.1\|854986_855724_-\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_CP016501.1\|WP_000065321.1\|835268_836372_-\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NZ_CP016501.1\|WP_000323544.1\|854215_854986_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_CP016501.1\|WP_000914664.1\|855727_856858_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP016501.1\|WP_000653360.1\|853569_854226_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	8.67363e-51
NZ_CP016501.1\|WP_000621142.1\|839749_840214_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NZ_CP016501.1\|WP_001241816.1\|856949_857330_-\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_CP016501.1\|WP_000159234.1\|857354_857726_-\|DUF1722-domain-containing-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_CP016501.1\|WP_001242359.1\|847860_848187_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.0048e-50
NZ_CP016501.1\|WP_000929489.1\|848198_849068_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_CP016501.1\|WP_001019133.1\|843865_845698_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP016501.1\|WP_000438314.1\|845833_846250_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_CP016501.1\|WP_000146566.1\|834509_835148_+\|antibiotic-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	9.50556e-71
NZ_CP016501.1\|WP_000665410.1\|839315_839750_-\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_CP016501.1\|WP_001056394.1\|833187_833799_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
NZ_CP016501.1\|WP_001040087.1\|849069_853182_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_CP016501.1\|WP_070001305.1\|840222_840834_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.09273e-33

>NZ_CP016501.1|WP_011058334.1|846382_846553_-|hypothetical-protein
MKGYNSNLMVKGLGCSTLYLIISLTALVLLVIAGVFFVINTCKLTRKAVENLSIIN
>NZ_CP016501.1|WP_000438314.1|845833_846250_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_CP016501.1|WP_001019133.1|843865_845698_-|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_CP016501.1|WP_070001305.1|840222_840834_-|HD-domain-containing-protein
MVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_CP016501.1|WP_000621142.1|839749_840214_-|N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_CP016501.1|WP_000665410.1|839315_839750_-|peptide-methionine-(R)-S-oxide-reductase
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_CP016501.1|WP_000065321.1|835268_836372_-|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NZ_CP016501.1|WP_000146566.1|834509_835148_+|antibiotic-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYGVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_CP016501.1|WP_001056394.1|833187_833799_-|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN
>NZ_CP016501.1|WP_000467138.1|830933_831716_+|hypothetical-protein
MFGKLLKYELKSVGKWYLTLNAAVLLVSIILGLVLKALGGNFSTDTNSTSAQIFTIILVLLLAMVISGSLLSTLAIIIKRFYSNIFGRQGYLTLTLPVTTNQIICSKLLASLLWSIFNIFIVIIGIILVILPLVGIGQFVVAFPEIYKIISSSNAPLFIAYFFLSYVAGTLLIYLSIAVGQLFTNKRVLMGIVSYFGISLLITFLTLIIDSIFHIDLFNSHANATFSQPVLLYNILVSIVEIAIFYMLTHSIIKYKLNIQ
>NZ_CP016501.1|WP_000590706.1|847208_847874_-|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_CP016501.1|WP_001242359.1|847860_848187_-|CRISPR-associated-endonuclease-Cas2
MRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_CP016501.1|WP_000929489.1|848198_849068_-|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_CP016501.1|WP_001040087.1|849069_853182_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_CP016501.1|WP_000653360.1|853569_854226_-|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRSGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_CP016501.1|WP_000323544.1|854215_854986_-|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_CP016501.1|WP_000523795.1|854986_855724_-|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_CP016501.1|WP_000914664.1|855727_856858_-|coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_CP016501.1|WP_001241816.1|856949_857330_-|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_CP016501.1|WP_000159234.1|857354_857726_-|DUF1722-domain-containing-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP016501_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016501_2

1898343-1898429

Orphan

Consensus_repeat	Method
GCTCAAACTAAGTACGATACTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016501_2

>merge|NZ_CP016501|2|1898343-1898429|CRISPRCasFinder
GCTCAAACTAAGTACGATACTGCTGTTAAAGCAGACCAAGATGCTAAAGTTAAGTTGGCTAAGGCTCAAACTGAGTACGATACTGCT

>NZ_CP016501|2|2|1898343-1898429|CRISPRCasFinder
GCTCAAACTAAGTACGATACTGCT	GTTAAAGCAGACCAAGATGCTAAAGTTAAGTTGGCTAAG
GCTCAAACTGAGTACGATACTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016501.1\|WP_000857770.1\|1905577_1906522_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP016501.1\|WP_000852726.1\|1899297_1899759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_000614740.1\|1893407_1893938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_000830936.1\|1903836_1905588_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP016501.1\|WP_000097743.1\|1890880_1891144_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_000661406.1\|1895977_1896313_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP016501.1\|WP_001138859.1\|1907528_1907837_-\|bacteriocin-immunity-protein	unknown	unknown	gnl\|CDD\|370205
NZ_CP016501.1\|WP_001019353.1\|1889518_1890784_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP016501.1\|WP_001180636.1\|1894984_1895941_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_000915478.1\|1906629_1907502_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP016501.1\|WP_000458739.1\|1894456_1894750_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_000290414.1\|1902061_1902244_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NZ_CP016501.1\|WP_000027783.1\|1892661_1893408_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224588
NZ_CP016501.1\|WP_001292556.1\|1900319_1901597_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP016501.1\|WP_050886285.1\|1888044_1889322_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP016501.1\|WP_000190889.1\|1893934_1894375_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016501.1\|WP_000185201.1\|1891226_1892498_-\|replication-protein-RepA	unknown	unknown	unknown
NZ_CP016501.1\|WP_000775906.1\|1902463_1903744_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP016501.1\|WP_001265622.1\|1901896_1902046_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP016501.1\|WP_000379866.1\|1907924_1909616_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|183534

Protein	Function_ID	Function_description	E-value
NZ_CP016501.1\|WP_000857770.1\|1905577_1906522_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.35347e-81
NZ_CP016501.1\|WP_000379866.1\|1907924_1909616_-\|arginine--tRNA-ligase	gnl\|CDD\|183534	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP016501.1\|WP_000830936.1\|1903836_1905588_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP016501.1\|WP_000661406.1\|1895977_1896313_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.5066e-07
NZ_CP016501.1\|WP_001138859.1\|1907528_1907837_-\|bacteriocin-immunity-protein	gnl\|CDD\|370205	pfam08951, EntA_Immun, Enterocin A Immunity. Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc pfam10439). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin. The C-terminal hair-pin recognizes the C-terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, pfam01721. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids.	8.07327e-08
NZ_CP016501.1\|WP_001019353.1\|1889518_1890784_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.90804e-32
NZ_CP016501.1\|WP_000915478.1\|1906629_1907502_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.20576e-84
NZ_CP016501.1\|WP_000290414.1\|1902061_1902244_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	2.16073e-18
NZ_CP016501.1\|WP_000027783.1\|1892661_1893408_-\|hypothetical-protein	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.02593e-08
NZ_CP016501.1\|WP_001292556.1\|1900319_1901597_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	5.32369e-174
NZ_CP016501.1\|WP_050886285.1\|1888044_1889322_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.25806e-172
NZ_CP016501.1\|WP_000775906.1\|1902463_1903744_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP016501.1\|WP_001265622.1\|1901896_1902046_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	6.45602e-18

>NZ_CP016501.1|WP_000661406.1|1895977_1896313_-|XRE-family-transcriptional-regulator
MKELNLRAYIGKRIRILRTQKHLTQQQLEEDADLPLKYTYKLENLEPNITVETLEKIMTALDTNIESFFDISLKEDNPLTNQLLSKIAEFPASKQERLLKLLINIIDEVEK
>NZ_CP016501.1|WP_001180636.1|1894984_1895941_+|hypothetical-protein
MQNNISCFEVLENLYKENTEFKNEFKQIIFDIAILKKYITYWQTYDFLTKFRDKILPKQFRGGSKGGFIEDYDSDNKMKEWKSFSAKGTTKFVISLVFQEIKEESEEIKDMLRGGIESYLQDKDPELNELLLSQEDKDLIRSCSNVVKKYENITKIYNVRYSIFELSSEQLNNMKSYLLQFIMDSQDKNNFDLEYTALEEYLNQKNFLNLLEELTANLINSQNKSEAQKNIMGIMFLLAKVRIGITESSALQTREVTNDKGRKPLLNIPTKMNLNELSEENQKLQKELEVLLEPLLNSRFILNNLYEFYFECRGNLQI
>NZ_CP016501.1|WP_000458739.1|1894456_1894750_-|hypothetical-protein
MFCQEILVTVSVLGVSPEIDFETKQATGNIKIDAGFRNSSGKHITRTIKIANSTVSEYSTYLDEKVNLRLERVTFSPYLTNGRAALSIKAESATIEE
>NZ_CP016501.1|WP_000190889.1|1893934_1894375_-|hypothetical-protein
MATIFKKTIKQTPTITFDKCVTECEKILGVLGIDQLVNLSVKDRMKLSKKFEYNSYDSRGILSLQALVPKYAIKKDSLLLKQRENSFVTTAQRQHAQKLYDKISRAVNSYPYGVITCYEFEQWIDEHLRLYIMLKYDKDFEGDNIL
>NZ_CP016501.1|WP_000614740.1|1893407_1893938_-|hypothetical-protein
MIQILQLVFYFIIIFFIPYLGLILVNTVILIYTLPAEQLLPQAIQNTNLQIQKWLKSFNVFPKERDCYSDFYIELTHQAIKLRPCLNTGLYPNGVQREGMDFYLWLSKVPDPKEFEPWKMQLRQTVRTYDDNLDVLFNMIEEEPFLKLKMNLVPKIELNQLEHGQPKALYNEEGEV
>NZ_CP016501.1|WP_000027783.1|1892661_1893408_-|hypothetical-protein
MSIRLKILRQEGSNEPVSWDTIRYPHMLISAPTNSGKSYFIKYLLSILAIHSTDASIMILDYKQGTDYWQWIDSDNVFLGDSVYDGFRQAYKIFENRRLDPKKEYPPFFLIFEEYQSTIESISKKADKDEFLRLVGNLLRLSRQVNYHLICICQRVDASVFPAGGRENFAAKISIGRLSPQAKQMLFPDDGVNCNKGQGEVNFQFDGQPVIEAKTYTIRDMEKAKHLITDLLNRGLPQSDETVAKGEP
>NZ_CP016501.1|WP_000185201.1|1891226_1892498_-|replication-protein-RepA
MTNSNISSDFRANSFCCVLNNVDKLFDKESVFFDSDKYKEKTKKRIQEFRKLLPDTNEPLNPEEIVDFLMERWMARNENVVCAINYEIGDNGVHHCHMVLEDKKAFRFSALQKLYPTIHAEITRGTKEQVIAYLEKSGEHEEKAHTIVVPMKVHGELRARNQGHRSDFDYIQRQIENGATPEEIMMGNLEYRKYSKMIREHFFQHRFAQTPDIKDMKVYWHVGESGSGKSHTQVHLKQEFGRDNVYIWTDFDNGGLDLYCAEPILFMDEFKGMSYKEFLKVTDVYPVQLHARYTNTIALWNEIHITSIFTPKEAYGLMVPESQQEVDSYKQLQRRLTNVIYHFKIREDDGNFKYKTITFTPEDFERHNQEQIEKFAYLFDKFNPNVLNYDFTKDAFHLSMNPINNKKKKATTLKLTKAESNSK
>NZ_CP016501.1|WP_000097743.1|1890880_1891144_-|hypothetical-protein
MSSNNFDLKQIELMLLTVIDLLKHLNTEKNKTGIIYTQKELLDLLSISPNTLKSWENRGLKRLEPPIEGTRTVYYHIDTVLEFLSHN
>NZ_CP016501.1|WP_001019353.1|1889518_1890784_-|site-specific-integrase
MNIEKIIHKGKTVLKKVKDNGEISYSAKSIYLGLDIKTGKPVKTTVTAKTLRSLDRKIIQAKIDFEESGSTRKETFSIATLSDLAELWFSNYETWVSSDNTLNRVRNYLDTYILPQFGQYQPDKVTSSDIQNWVNELATKSKESVDSGIKRAEKGCAKDFGAIAHKLSDIFDFGITHFELKHNPAQSIKIPPKPKSNQKRIMVLHDEDLTIWLNFVDTLPNTRANRRFKVICDSLLASGMRINELLALTIYDLDFESSEILVTKTLVWKNAKPKLGLKGKVVCKNTPKSDSGNRKIAVPYQIIEQLQNFHDEMNLYFKKNGLSKSKLIFPTIYGNYMCDRNERATLKRRLQEVGLPDYGFHLFRHTHASMMLNAGMNWKELQVRMGHKSIKTTMDIYAELAPKNQTQAVDIYLNKIAELTS
>NZ_CP016501.1|WP_050886285.1|1888044_1889322_+|group-II-intron-reverse-transcriptase/maturase
MSELLDKILSRNNMLEAYKQVKSNKGSAGIDGVTIEQMDDYLHQNWRETKQLIKERSYKPQPVLRVEIPKPNGGVRNLGIPTAMDRMIQQAIVQVLSPLCEKHFSEYSYGFRSNRSCETAIVQLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIQDGDTESLIRKYLHSGVVINGQRHKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAAAKRVMHSVSSYIEKRLGLKVNMTKTKIVRPNKLKYLGFGFWKSPKGWKCRPHQDSVQSFKRKLKQLTMRKWSIDLITRIERLNWVIRGWINYFSLGNMKSIMTQIDERLRTRIRVIIWKQWKKKAKRLWGLLKLGVARWIADKVSGWGDHYQLVAQKSVLKRAISKPALAKRGLVSCLDYYLERHALKVS
>NZ_CP016501.1|WP_000852726.1|1899297_1899759_+|hypothetical-protein
MAEVTTIVYRLGSQYDEKMSAISVFDAHLFHAKCHGDKVLFTVPTQNNTKVGKKVEKIDNIILTLKDGSKSLFAEVDAHGVFPEKVKDGYIYTLPSQWNVFEEIEQGYTWFALKGVKEISEEELNSYKSTNERECPLLQSISGASCRIYVTEE
>NZ_CP016501.1|WP_001292556.1|1900319_1901597_+|group-II-intron-reverse-transcriptase/maturase
MSELLDKILSRNNMLEAYKQVKSNKGSAGIDGVTIEQMDDYLHQNWRETKQLIKERSYKPQPVLRVEIPKPNGGVRNLGIPTAMDRMIQQAIVQVLSPLCEKHFSEYSYGFRPNRSCETAIVQLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIQDGDTESLIRKYLHSGVVINGQRHKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAAAKRVMHSVSSYIEKRLGLKVNMTKTKIVRPNKLKYLGFGFWKSPKGWKCRPHQDSVQSFKRKLKQLTMRKWSIDLITRIERLNWVIRGWINYFSLGNMKSIMTQIDERLRTRIRVIIWKQWKKKAKRLWGLLKLGVARWIADKVSGWGDHYQLVAQKSVLKRAISKPALAKRGLVSCLDYYLERHALKVS
>NZ_CP016501.1|WP_001265622.1|1901896_1902046_-|50S-ribosomal-protein-L33
MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVVFTEVK
>NZ_CP016501.1|WP_000290414.1|1902061_1902244_-|50S-ribosomal-protein-L32
MAVPARHTSKAKKNKRRTHYKLTAPSVQFDETTGDYSRSHRVSLKGYYKGRKIAKANEAK
>NZ_CP016501.1|WP_000775906.1|1902463_1903744_+|histidine--tRNA-ligase
MKLQKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLRPEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAGRLREFHQVGVECFGSNNPATDVETIAMGHHLFEDLGIKNVKLHLNSLGSPESRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYNHTIFEFITEIEDNELTICAGGRYDGLVSYFGGPETPAFGFGLGLERLLLILGKQGIPLPIENTIDLYIAVLGSEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSREVSLKNNQTRQEVKVSFENIKTGFSSVLKQLGL
>NZ_CP016501.1|WP_000830936.1|1903836_1905588_+|aspartate--tRNA-ligase
MKRSMYAGRVRSEHIGTSITLKGWVGRRRDLGGLIFIDLRDREGIMQLVINPEEVSASVMATAESLRSEFVIEVSGVVTAREQANDNLPTGEVELKVQELSVLNTSKTTPFEIKDGIEANDDTRMRYRYLDLRRPEMLENFKLRAKVTHSIRNYLDNLEFIDVETPMLTKSTPEGARDYLVPSRVNQGHFYALPQSPQITKQLLMNAGFDRYYQIVKCFRDEDLRGDRQPEFTQVDLETSFLSDQEIQDIVEGMIAKVMKDTKGLEVSLPFPRMAYDDAMNNYGSDKPDTRFDMLLQDLTEVVKEVDFKVFSEASVVKAIVVKNKADKYSRKNIDKLTEIAKQYGAKGLAWLKYADNTISGPVAKFLTAIEDRLTEALQLENNDLILFVADSLEVANETLGALRTRIAKELELIDYSKFNFLWIVDWPMFEWSEEEGRYMSAHHPFTLPTAETAHELEGDLAKVRAVAYDIVLNGYELGGGSLRINQKDTQERMFKALGFSAESAQEQFGFLLEAMDYGFPPHGGLAIGLDRFVMLLAGKDNIREVIAFPKNNKASDPMTQAPSLVSEQQLEELSLTVESYEN
>NZ_CP016501.1|WP_000857770.1|1905577_1906522_+|YitT-family-protein
MKTRRTPLEKKVKYIISVWAKKFGLLHTLKSISREKYAEKISASLLYGILSSVAVNFFFQPGHVYSSGATGLAQVISAVSKHWFSFEIPVALAFYAINIPLLILSWRKIGHKFTIFTFITVTVSSIFIQLMPQITLTTDPLINAIFGGLIMGAGVGFSFKSRISSGGTDIISLTIRKKTGRDVGSISFIINGIILLFAGLLFGWKYALYSMVTIFVSSRVTDAIFTKQKKMQAMIVTSKPDCVIKRIHRDLHRGVTCINDAEGTYNHEKKAVLITILTREEFSDFKYLMLKADPKAFVSVAENVHIIGRFVDDD
>NZ_CP016501.1|WP_000915478.1|1906629_1907502_+|YitT-family-protein
MLKLDLKTKIKEAILIALGVALYTFGFVKFNMANHLAEGGISGVTLIIHALFGVNPALSSLLLNIPLFILGARILGKKSLLLTIYGTVLMSFFMWFWQQIPVTVPLKNDMMLVAVAAGILAGTGSGLVFRYGATTGGADIIGRIVEEKSGIKLGQTLLFIDAIVLTSSLVYINLQQMLYTLVASFVFSQVLTNVENGGYTVRGMIIITKESESAAATILHEINRGVTFLRGQGAYSGREHDVLYVALNPSEVRDVKEIMADLDPDAFISVINVDEVISSDFKIRRRNYDK
>NZ_CP016501.1|WP_001138859.1|1907528_1907837_-|bacteriocin-immunity-protein
MPSEKEILDALSKVYSEEVIQADDYFRQAIFELASQLEKEGMNSLLATKIDSLINQYVLTHQFDAPKSIFDLSRLVKTKASHYKGTAISAIMLGSFLSGGPK
>NZ_CP016501.1|WP_000379866.1|1907924_1909616_-|arginine--tRNA-ligase
MDTKHLIASEIQKVVPDMEQSTILSLLETPKNSSMGDLAFPAFSLAKTLRKAPQIIASDIAEQIKSDQFEKVEAVGPYVNFFLDKAAISSQVLKQVLSDGSAYATQNIGEGRNVAIDMSSPNIAKPFSIGHLRSTVIGDSLANIFDKIGYHPVKINHLGDWGKQFGMLIVAYKKWGNEEAVRAHPIDELLKLYVRINAEAETDPSVDEEAREWFRKLEANDPEATELWQWFRDESLLEFNRLYDKMNVTFDSYNGEAFYNDKMEEVLELLESKNLLVESKGAQVVNLEKYGIEHPALIKKSDGATLYITRDLAAALYRRRTYDFAKSIYVVGNEQSAHFKQLKAVLKEMDYDWSDDMTHVPFGLVTKGGAKLSTRKGNVILLEPTVAEAINRAASQIEAKNPNLADKDKVAQAVGVGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANFNPSNSDNYSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAEISSRLALCYATATVLKESLRLLGVDAPNEM

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	NZ_CP016501.1	2094020-2094048	0	1.0

1. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to position: 2094020-2094048, mismatch: 0, identity: 1.0

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
ttgatagatttcttacaaaatgaacgcat	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	MK308676	Vibrio phage vB_VmeM-Yong MS31, complete genome	172843-172871	7	0.759
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	MK308675	Vibrio phage vB_VmeM-Yong XC32, complete genome	172842-172870	7	0.759
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	MK308677	Vibrio phage vB_VmeM-Yong MS32, complete genome	172843-172871	7	0.759
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	MK308674	Vibrio phage vB_VmeM-Yong XC31, complete genome	172842-172870	7	0.759
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	429648-429676	7	0.759
NZ_CP016501_1	1.3\|846976\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846976-847004	29	MN855763	Myoviridae sp. isolate 210, complete genome	13489-13517	7	0.759
NZ_CP016501_1	1.2\|846910\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846910-846938	29	NZ_CP020580	Acinetobacter baumannii strain SSMA17 plasmid pSSMA17_1, complete sequence	55464-55492	8	0.724
NZ_CP016501_1	1.2\|846910\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846910-846938	29	NZ_CP020582	Acinetobacter baumannii strain JBA13 plasmid pJBA13_1, complete sequence	16314-16342	8	0.724
NZ_CP016501_1	1.2\|846910\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846910-846938	29	NZ_CP017657	Acinetobacter baumannii strain KAB08 plasmid unnamed, complete sequence	56273-56301	8	0.724
NZ_CP016501_1	1.2\|846910\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846910-846938	29	NZ_CP017649	Acinetobacter baumannii strain KAB04 plasmid unnamed, complete sequence	58336-58364	8	0.724
NZ_CP016501_1	1.2\|846910\|29\|NZ_CP016501\|CRT,PILER-CR,CRISPRCasFinder	846910-846938	29	NZ_CP050915	Acinetobacter baumannii strain DT-Ab007 plasmid unnamed1, complete sequence	22391-22419	8	0.724
NZ_CP016501_2	2.1\|1898367\|39\|NZ_CP016501\|CRISPRCasFinder	1898367-1898405	39	DQ535032	Lactococcus lactis phage KSY1, complete genome	76516-76554	11	0.718
NZ_CP016501_2	2.1\|1898367\|39\|NZ_CP016501\|CRISPRCasFinder	1898367-1898405	39	NC_009817	Lactococcus phage KSY1, complete genome	76516-76554	11	0.718

1. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to MK308676 (Vibrio phage vB_VmeM-Yong MS31, complete genome) position: , mismatch: 7, identity: 0.759

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
cgtccaaatttcttagaaaatgaacgcat	Protospacer
.   .*.******** *************

2. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to MK308675 (Vibrio phage vB_VmeM-Yong XC32, complete genome) position: , mismatch: 7, identity: 0.759

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
cgtccaaatttcttagaaaatgaacgcat	Protospacer
.   .*.******** *************

3. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to MK308677 (Vibrio phage vB_VmeM-Yong MS32, complete genome) position: , mismatch: 7, identity: 0.759

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
cgtccaaatttcttagaaaatgaacgcat	Protospacer
.   .*.******** *************

4. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to MK308674 (Vibrio phage vB_VmeM-Yong XC31, complete genome) position: , mismatch: 7, identity: 0.759

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
cgtccaaatttcttagaaaatgaacgcat	Protospacer
.   .*.******** *************

5. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.759

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
ttgatagatttcttgcaaaatacgtactt	Protospacer
**************.******. ...* *

6. spacer 1.3|846976|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to MN855763 (Myoviridae sp. isolate 210, complete genome) position: , mismatch: 7, identity: 0.759

ttgatagatttcttacaaaatgaacgcat	CRISPR spacer
attttgtttttctttcaaaatgaacgcat	Protospacer
 *  *.  ****** **************

7. spacer 1.2|846910|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020580 (Acinetobacter baumannii strain SSMA17 plasmid pSSMA17_1, complete sequence) position: , mismatch: 8, identity: 0.724

ggttatatggtcgatatgattctacaaca	CRISPR spacer
aaatgcttggtcgatttgattctacaacc	Protospacer
.. *.. ******** ************

8. spacer 1.2|846910|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020582 (Acinetobacter baumannii strain JBA13 plasmid pJBA13_1, complete sequence) position: , mismatch: 8, identity: 0.724

ggttatatggtcgatatgattctacaaca	CRISPR spacer
aaatgcttggtcgatttgattctacaacc	Protospacer
.. *.. ******** ************

9. spacer 1.2|846910|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017657 (Acinetobacter baumannii strain KAB08 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

ggttatatggtcgatatgattctacaaca	CRISPR spacer
aaatgcttggtcgatttgattctacaacc	Protospacer
.. *.. ******** ************

10. spacer 1.2|846910|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017649 (Acinetobacter baumannii strain KAB04 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

ggttatatggtcgatatgattctacaaca	CRISPR spacer
aaatgcttggtcgatttgattctacaacc	Protospacer
.. *.. ******** ************

11. spacer 1.2|846910|29|NZ_CP016501|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050915 (Acinetobacter baumannii strain DT-Ab007 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

ggttatatggtcgatatgattctacaaca	CRISPR spacer
aaatgcttggtcgatttgattctacaacc	Protospacer
.. *.. ******** ************

12. spacer 2.1|1898367|39|NZ_CP016501|CRISPRCasFinder matches to DQ535032 (Lactococcus lactis phage KSY1, complete genome) position: , mismatch: 11, identity: 0.718

gttaaagcagaccaagatgctaaagttaagttggctaag	CRISPR spacer
gaacaagcagaacaagatgctaaagttgagttattgtat	Protospacer
*   ******* ***************.****. .  *

13. spacer 2.1|1898367|39|NZ_CP016501|CRISPRCasFinder matches to NC_009817 (Lactococcus phage KSY1, complete genome) position: , mismatch: 11, identity: 0.718

gttaaagcagaccaagatgctaaagttaagttggctaag	CRISPR spacer
gaacaagcagaacaagatgctaaagttgagttattgtat	Protospacer
*   ******* ***************.****. .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

170766 : 182275

Streptococcus_phage(90.91%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069571495.1\|170766_171468_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-17	28.6
WP_001144248.1\|171486_172146_+	CBS domain-containing protein	M1NSC5	Streptococcus_phage	5.2e-64	55.6
WP_000160537.1\|172410_173577_-\|transposase	IS30-like element ISSag9 family transposase	NA	NA	NA	NA
WP_000715592.1\|173785_174421_+	thymidylate kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1
WP_000364565.1\|174440_175304_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
WP_000358198.1\|175333_175660_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_001866320.1\|175665_176529_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.4
WP_011058366.1\|176504_176666_-	hypothetical protein	NA	NA	NA	NA
WP_011058365.1\|176650_176755_+	hypothetical protein	NA	NA	NA	NA
WP_000603277.1\|176798_177434_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001167085.1\|178726_179275_+	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000232156.1\|179337_180519_+	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.0e-168	75.6
WP_000966772.1\|180573_181050_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000287944.1\|181051_181408_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
WP_000767484.1\|181447_182275_-	exodeoxyribonuclease	M1PSC0	Streptococcus_phage	4.3e-124	78.0

DBSCAN-SWA_2

1140008 : 1182358

Streptococcus_phage(97.22%)

tail,portal,terminase,head,holin,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000247956.1\|1140008_1140881_-	hypothetical protein	A0A0G2YBE6	Acanthamoeba_polyphaga_mimivirus	1.3e-06	25.1
WP_000504421.1\|1140894_1141668_-	hypothetical protein	NA	NA	NA	NA
WP_079254335.1\|1141737_1143042_-	recombinase family protein	E4ZFN9	Streptococcus_phage	1.4e-198	80.0
WP_000290968.1\|1142986_1144228_-	recombinase family protein	A0A1X9I6J1	Streptococcus_phage	1.2e-170	69.5
WP_000123549.1\|1144765_1144873_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_000143479.1\|1145008_1146415_-	LysM peptidoglycan-binding domain-containing protein	A0A1B0RXL4	Streptococcus_phage	3.7e-107	63.4
WP_000661349.1\|1146416_1146815_-\|holin	holin	D0R0E9	Streptococcus_phage	5.1e-38	60.8
WP_000796404.1\|1146832_1148689_-	hypothetical protein	Q6DMS9	Streptococcus_phage	2.7e-259	73.3
WP_069571476.1\|1148701_1151617_-	carbamoylsarcosine amidase	Q6DMT0	Streptococcus_phage	0.0e+00	64.5
WP_000589863.1\|1151616_1152342_-	hypothetical protein	Q6DMT1	Streptococcus_phage	2.1e-82	58.8
WP_000918343.1\|1152338_1155458_-	hypothetical protein	Q6DMT2	Streptococcus_phage	3.5e-259	78.0
WP_001249616.1\|1155752_1156172_-	hypothetical protein	A0A1X9I691	Streptococcus_phage	2.8e-55	75.5
WP_000818565.1\|1156183_1156753_-	hypothetical protein	E4ZFM9	Streptococcus_phage	5.1e-100	97.3
WP_001209971.1\|1156755_1157082_-	hypothetical protein	M1Q1Z4	Streptococcus_phage	5.4e-38	67.6
WP_000161241.1\|1157090_1157459_-	hypothetical protein	Q6DMT7	Streptococcus_phage	9.1e-34	62.1
WP_000684962.1\|1157451_1157790_-\|head,tail	head-tail adaptor protein	A0A1B0RXE4	Streptococcus_phage	1.2e-37	69.6
WP_000988605.1\|1157789_1158047_-\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	4.3e-30	78.8
WP_000040500.1\|1158043_1159252_-\|capsid	phage major capsid protein	E4ZFM5	Streptococcus_phage	6.8e-211	91.3
WP_001225236.1\|1159265_1159964_-\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	1.4e-104	82.8
WP_000523688.1\|1159956_1161246_-\|portal	phage portal protein	E4ZFM3	Streptococcus_phage	2.0e-229	91.0
WP_000424367.1\|1161326_1161599_-	hypothetical protein	E4ZFM1	Streptococcus_phage	4.1e-07	78.0
WP_000666489.1\|1161615_1161921_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001140392.1\|1161920_1162223_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_000220985.1\|1162278_1163871_-\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	1.5e-306	95.5
WP_000342209.1\|1164377_1164827_-	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	2.1e-16	65.2
WP_000164539.1\|1164837_1165092_-	hypothetical protein	NA	NA	NA	NA
WP_000176350.1\|1165169_1166423_-	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	2.5e-232	93.8
WP_000211620.1\|1166419_1167676_-	lactate dehydrogenase	A0A1B0RXE5	Streptococcus_phage	7.5e-221	90.7
WP_000999418.1\|1167647_1168103_-	hypothetical protein	A0A1B0RXC6	Streptococcus_phage	5.4e-44	51.0
WP_001138031.1\|1168390_1168756_-	HNH endonuclease	A0A1B0RXJ3	Streptococcus_phage	6.6e-61	86.0
WP_000640707.1\|1168757_1169795_-	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	2.2e-170	84.9
WP_000356300.1\|1170187_1170685_-	hypothetical protein	A0A1B0RXB9	Streptococcus_phage	4.3e-63	75.0
WP_000768926.1\|1170677_1172054_-	ATP-dependent helicase	A0A1X9I6B0	Streptococcus_phage	5.2e-231	86.2
WP_001208492.1\|1172034_1172316_-	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	7.9e-38	79.6
WP_001160920.1\|1172599_1174885_-	hypothetical protein	E4ZFK6	Streptococcus_phage	0.0e+00	79.1
WP_000041407.1\|1175281_1175605_+	hypothetical protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
WP_001873559.1\|1175597_1176719_+	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	2.6e-196	87.9
WP_000208946.1\|1176723_1177287_+	DUF2815 domain-containing protein	A0A1B0RXA9	Streptococcus_phage	3.3e-91	93.4
WP_000905646.1\|1177517_1179473_+	DNA polymerase I	D0R0B0	Streptococcus_phage	0.0e+00	84.0
WP_001122250.1\|1179511_1180081_-	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	1.1e-86	81.0
WP_000459854.1\|1180489_1182358_-	XRE family transcriptional regulator	E4ZFJ9	Streptococcus_phage	5.2e-303	81.0

DBSCAN-SWA_3

1492981 : 1500501

Bacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000041114.1\|1492981_1494316_-	aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	1.1e-63	33.3
WP_000468675.1\|1494522_1495983_+\|transposase	IS1182-like element IS1563 family transposase	A0A1X9I5T2	Streptococcus_phage	1.3e-203	74.8
WP_000174854.1\|1495992_1496814_-	NAD(+) synthetase	G3MA24	Bacillus_virus	7.7e-73	55.1
WP_000276183.1\|1496810_1498271_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.4e-100	42.3
WP_000272353.1\|1498428_1499343_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.1e-87	52.8
WP_000478229.1\|1499411_1499636_-	DUF4059 domain-containing protein	NA	NA	NA	NA
WP_000593862.1\|1499757_1500501_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-29	38.1

DBSCAN-SWA_4

1764624 : 1776689

Streptomyces_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000783424.1\|1764624_1765929_-	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	1.7e-05	40.5
WP_001045908.1\|1766075_1766975_-	hypothetical protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000166558.1\|1767167_1768715_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.5e-77	48.9
WP_000780020.1\|1768734_1769487_-	GNAT family acetyltransferase	NA	NA	NA	NA
WP_000685111.1\|1769506_1770058_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	35.6
WP_001291325.1\|1770225_1771248_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	9.6e-65	44.6
WP_000220672.1\|1771275_1772730_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.3e-54	32.5
WP_001042263.1\|1772963_1776689_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0

DBSCAN-SWA_5

1836703 : 1843907

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000706190.1\|1836703_1837948_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5
WP_000217765.1\|1837949_1839233_+	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	1.6e-05	23.6
WP_000239224.1\|1839355_1839898_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000181757.1\|1839897_1840737_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000510606.1\|1840712_1841555_+	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
WP_000359358.1\|1841547_1842342_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000029067.1\|1842557_1843097_+	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
WP_001042661.1\|1843202_1843907_+	transglycosylase	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6

DBSCAN-SWA_6

1852209 : 1867825

Streptococcus_phage(76.92%)

integrase

attL 1854788:1854807|attR 1868663:1868682

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000852645.1\|1852209_1853565_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6
WP_001278152.1\|1853576_1853864_+	hypothetical protein	NA	NA	NA	NA
WP_000092759.1\|1854193_1854805_+	30S ribosomal protein S4	NA	NA	NA	NA
1854788:1854807	attL	NA	NA	NA	NA
WP_000605384.1\|1854911_1856084_-\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	5.7e-154	70.1
WP_000429451.1\|1856415_1857381_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	7.1e-86	51.1
WP_000946250.1\|1857918_1858206_-	DUF3102 domain-containing protein	A0A286QMZ8	Streptococcus_phage	1.9e-10	61.4
WP_001080841.1\|1858217_1858832_-	XRE family transcriptional regulator	A0A1X9I723	Streptococcus_phage	2.6e-17	68.7
WP_000359663.1\|1859037_1859238_+	transcriptional regulator	NA	NA	NA	NA
WP_001258618.1\|1859261_1859864_+	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	5.1e-42	47.2
WP_001021393.1\|1860099_1860738_+	hypothetical protein	NA	NA	NA	NA
WP_011285274.1\|1860821_1861013_+	hypothetical protein	NA	NA	NA	NA
WP_000916925.1\|1861153_1861606_+	hypothetical protein	A0A1X9I5V7	Streptococcus_phage	2.0e-06	34.4
WP_000877495.1\|1861694_1862027_+	hypothetical protein	NA	NA	NA	NA
WP_000613926.1\|1862023_1862218_+	hypothetical protein	NA	NA	NA	NA
WP_000174496.1\|1862229_1862559_+	hypothetical protein	NA	NA	NA	NA
WP_001100458.1\|1862561_1862834_+	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	1.4e-18	60.0
WP_001029288.1\|1862834_1863704_+	hypothetical protein	A0A1X9I6L2	Streptococcus_phage	7.7e-116	71.4
WP_000838179.1\|1863723_1865226_+	DNA primase	Q9AZI5	Lactococcus_phage	3.5e-63	36.9
WP_000173127.1\|1865590_1866136_+	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	1.2e-26	57.0
WP_000891150.1\|1866209_1866698_+	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.2e-49	58.0
WP_079260833.1\|1866894_1867074_+	hypothetical protein	NA	NA	NA	NA
WP_001274639.1\|1867101_1867464_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_000038827.1\|1867438_1867825_+	ArpU family phage encoded transcriptional regulator	A0A141E173	Streptococcus_phage	1.2e-07	33.1
1868663:1868682	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP016501.1|WP_000384271.1|1568021_1568348_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP016501.1|WP_000384271.1|1568021_1568348_-|hypothetical-protein

1568021_1568348_-

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	1.0	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016501

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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