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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017019 Moorella thermoacetica strain DSM 103132, complete genome 6 crisprs csa3,csx1,csx15,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cas6,c2c10_CAS-V-U3,cas14k,c2c9_V-U4,DinG 0 12 5 0

Results visualization

1. NZ_CP017019
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017019_1 479330-485861 TypeIII NA
98 spacers
cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017019_2 487499-489918 TypeIII NA
36 spacers
cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017019_3 492425-492652 Unclear NA
3 spacers
cas6,cas2,cas1,cas4,cas3,cas5,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017019_4 523189-523283 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017019_5 1931046-1932958 Unclear NA
29 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017019_6 1935464-1938935 Unclear NA
53 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017019_1 1.72|484069|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 484069-484103 35 MN693029 Marine virus AFVG_117M56, complete genome 52567-52601 8 0.771
NZ_CP017019_1 1.72|484069|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 484069-484103 35 MN692985 Marine virus AFVG_117M57, complete genome 52707-52741 8 0.771
NZ_CP017019_5 5.8|1931539|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1931539-1931573 35 X96987 Bacteriophage GA-1 complete genome sequence 18822-18856 8 0.771
NZ_CP017019_5 5.8|1931539|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1931539-1931573 35 NC_002649 Bacillus phage GA-1, complete genome 18822-18856 8 0.771
NZ_CP017019_1 1.5|479624|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 479624-479658 35 NZ_CP035002 Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence 523202-523236 9 0.743
NZ_CP017019_1 1.73|484134|36|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 484134-484169 36 MH673673 Thermus phage phiLo, complete genome 143239-143274 9 0.75
NZ_CP017019_1 1.93|485464|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 485464-485498 35 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1597822-1597856 9 0.743
NZ_CP017019_6 6.38|1937898|34|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1937898-1937931 34 NZ_CP022726 Erwinia persicina strain B64 plasmid pEP1, complete sequence 11529-11562 9 0.735
NZ_CP017019_6 6.33|1937574|36|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1937574-1937609 36 NC_019957 Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence 194243-194278 10 0.722
NZ_CP017019_1 1.34|481545|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 481545-481579 35 NZ_CP041205 Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence 247354-247388 11 0.686
NZ_CP017019_3 3.3|492588|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 492588-492622 35 LR745207 uncultured phage genome assembly, chromosome: 1 121634-121668 11 0.686
NZ_CP017019_5 5.20|1932312|34|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1932312-1932345 34 NC_009621 Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence 1195361-1195394 11 0.676
NZ_CP017019_5 5.20|1932312|34|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1932312-1932345 34 NZ_CP023065 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence 238732-238765 11 0.676
NZ_CP017019_6 6.23|1936922|36|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 1936922-1936957 36 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 498686-498721 11 0.694
NZ_CP017019_1 1.1|479360|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT 479360-479394 35 NZ_AP014708 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_4p, complete sequence 3404-3438 12 0.657

1. spacer 1.72|484069|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to MN693029 (Marine virus AFVG_117M56, complete genome) position: , mismatch: 8, identity: 0.771

atttcaagtaaagtattttgtaattctccttttct	CRISPR spacer
atatattttaaagtatcttgtaattctactttttt	Protospacer
** *    ********.********** *****.*

2. spacer 1.72|484069|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to MN692985 (Marine virus AFVG_117M57, complete genome) position: , mismatch: 8, identity: 0.771

atttcaagtaaagtattttgtaattctccttttct	CRISPR spacer
atatattttaaagtatcttgtaattctactttttt	Protospacer
** *    ********.********** *****.*

3. spacer 5.8|1931539|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to X96987 (Bacteriophage GA-1 complete genome sequence) position: , mismatch: 8, identity: 0.771

acaaaaaggaggcaacaaaaatgacctacaccata	CRISPR spacer
acaaataggaggaaacaaaaatgacaaacgctgtt	Protospacer
***** ****** ************  **.*..* 

4. spacer 5.8|1931539|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NC_002649 (Bacillus phage GA-1, complete genome) position: , mismatch: 8, identity: 0.771

acaaaaaggaggcaacaaaaatgacctacaccata	CRISPR spacer
acaaataggaggaaacaaaaatgacaaacgctgtt	Protospacer
***** ****** ************  **.*..* 

5. spacer 1.5|479624|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 9, identity: 0.743

tcgacctgccggaaggctcctggcgcggtggccat	CRISPR spacer
tggtgctgccggcaggctgctggcgcggtggaata	Protospacer
* *  ******* ***** ************    

6. spacer 1.73|484134|36|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to MH673673 (Thermus phage phiLo, complete genome) position: , mismatch: 9, identity: 0.75

ttgagtccttgccattgttacatacctccattttaa	CRISPR spacer
gtgagtccttcccattgctacataccttatttctgg	Protospacer
 ********* ******.*********.  **.*..

7. spacer 1.93|485464|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.743

tgaagctggtcatcgattttccgcccgaactcaag	CRISPR spacer
accagacgaccatcgattttccgccggaaatcaag	Protospacer
   ** .*..*************** *** *****

8. spacer 6.38|1937898|34|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022726 (Erwinia persicina strain B64 plasmid pEP1, complete sequence) position: , mismatch: 9, identity: 0.735

tagcagatgcggcaggcaatcggtacttaatata	CRISPR spacer
cgcgagatgcggcaggcgatcggtacttcagtaa	Protospacer
..  *************.********** *   *

9. spacer 6.33|1937574|36|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 10, identity: 0.722

cagctccatcctcgcccagggcgtcccgcagatcga	CRISPR spacer
ggcgtactacctcgcccaggccgtcccccagatcgc	Protospacer
 .  * *  *********** ****** ******* 

10. spacer 1.34|481545|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 11, identity: 0.686

tcgcttgcgatgacgatttcctcatagctcccgtt	CRISPR spacer
ggcgttgcgatgacgatttcgtcatcgctcggcgg	Protospacer
    **************** **** ****     

11. spacer 3.3|492588|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to LR745207 (uncultured phage genome assembly, chromosome: 1) position: , mismatch: 11, identity: 0.686

caaagaaccaacgaaaacgaaaaagccaaacatat	CRISPR spacer
tttcgttatgacgaaaacgaaaaagcaaaacaaat	Protospacer
.   *   ..**************** ***** **

12. spacer 5.20|1932312|34|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 11, identity: 0.676

gcacttgaggctttccgtggcggctgccgcaggg	CRISPR spacer
aagagcgaggctttccgtggcggcggtcgctgta	Protospacer
. .  .****************** *.*** * .

13. spacer 5.20|1932312|34|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 11, identity: 0.676

gcacttgaggctttccgtggcggctgccgcaggg	CRISPR spacer
aagagcgaggctttccgtggcggcggtcgcggta	Protospacer
. .  .****************** *.***.* .

14. spacer 6.23|1936922|36|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.694

tttcatagactgattccttcggcgcctcgcatctca	CRISPR spacer
gcgcatagacggattccttcggcccctcggcctcct	Protospacer
 . ******* ************ *****  ...* 

15. spacer 1.1|479360|35|NZ_CP017019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014708 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_4p, complete sequence) position: , mismatch: 12, identity: 0.657

aatacctggggcaagacgtggggggacttaaatac	CRISPR spacer
cgtacctggggcaagacctggggcgacccggtcgt	Protospacer
 .*************** ***** ***.... ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 584777 : 662520 89 Bacillus_phage(16.67%) protease,transposase NA
DBSCAN-SWA_2 1311640 : 1317612 8 Bacillus_phage(50.0%) integrase attL 1311261:1311273|attR 1319928:1319940
DBSCAN-SWA_3 2051306 : 2061670 12 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_4 2137641 : 2149138 7 Bacillus_phage(83.33%) NA NA
DBSCAN-SWA_5 2476199 : 2485081 8 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage