CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP012568	Klebsiella pneumoniae strain UCLAOXA232KP chromosome, complete genome	3 crisprs	cas3,csa3,DEDDh,DinG,RT,WYL	9
NZ_CP012570	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-4.X, complete sequence	0 crisprs	DEDDh	1
NZ_CP012571	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-5.X, complete sequence	0 crisprs	NA	6
NZ_CP012572	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-6.X, complete sequence	0 crisprs	csa3	9
NZ_CP012569	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-3.X, complete sequence	0 crisprs	TnsE_C,WYL,RT	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012568_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012568_1

497107-497184

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012568_1

>merge|NZ_CP012568|1|497107-497184|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP012568|1|1|497107-497184|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012568.1\|WP_004183475.1\|500425_501583_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP012568.1\|WP_040182175.1\|484272_486960_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP012568.1\|WP_002895648.1\|502314_503037_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP012568.1\|WP_004223758.1\|497885_499175_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP012568.1\|WP_072145324.1\|488671_489991_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP012568.1\|WP_004212869.1\|483789_484221_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NZ_CP012568.1\|WP_002895358.1\|491005_491731_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP012568.1\|WP_002895580.1\|499388_500429_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP012568.1\|WP_002895655.1\|504411_506433_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP012568.1\|WP_023302146.1\|489987_490944_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP012568.1\|WP_004183472.1\|493558_495085_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP012568.1\|WP_023302145.1\|501566_502322_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP012568.1\|WP_004147680.1\|506681_507779_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP012568.1\|WP_002895652.1\|503787_504000_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012568.1\|WP_014342949.1\|492623_493562_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP012568.1\|WP_002895575.1\|497338_497815_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP012568.1\|WP_004152853.1\|502978_503701_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP012568.1\|WP_004142122.1\|487233_488517_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP012568.1\|WP_004147672.1\|495183_496566_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP012568.1\|WP_004183463.1\|482170_483256_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776

Protein	Function_ID	Function_description	E-value
NZ_CP012568.1\|WP_004183475.1\|500425_501583_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP012568.1\|WP_040182175.1\|484272_486960_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP012568.1\|WP_002895648.1\|502314_503037_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP012568.1\|WP_004223758.1\|497885_499175_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP012568.1\|WP_072145324.1\|488671_489991_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP012568.1\|WP_004212869.1\|483789_484221_+\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	7.32546e-44
NZ_CP012568.1\|WP_002895358.1\|491005_491731_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP012568.1\|WP_002895580.1\|499388_500429_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP012568.1\|WP_023302146.1\|489987_490944_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	6.77924e-178
NZ_CP012568.1\|WP_004183472.1\|493558_495085_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP012568.1\|WP_023302145.1\|501566_502322_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.36239e-160
NZ_CP012568.1\|WP_004147680.1\|506681_507779_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP012568.1\|WP_002895655.1\|504411_506433_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP012568.1\|WP_014342949.1\|492623_493562_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP012568.1\|WP_002895575.1\|497338_497815_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP012568.1\|WP_004152853.1\|502978_503701_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP012568.1\|WP_004142122.1\|487233_488517_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP012568.1\|WP_004147672.1\|495183_496566_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP012568.1\|WP_004183463.1\|482170_483256_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.94626e-66

>NZ_CP012568.1|WP_004147672.1|495183_496566_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP012568.1|WP_004183472.1|493558_495085_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLIGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP012568.1|WP_014342949.1|492623_493562_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP012568.1|WP_002895358.1|491005_491731_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP012568.1|WP_023302146.1|489987_490944_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEVAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLARLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>NZ_CP012568.1|WP_072145324.1|488671_489991_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASMHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP012568.1|WP_004142122.1|487233_488517_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP012568.1|WP_040182175.1|484272_486960_+|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEQVGKIYAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NZ_CP012568.1|WP_004212869.1|483789_484221_+|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALTDELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NZ_CP012568.1|WP_004183463.1|482170_483256_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVAVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL
>NZ_CP012568.1|WP_002895575.1|497338_497815_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP012568.1|WP_004223758.1|497885_499175_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP012568.1|WP_002895580.1|499388_500429_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP012568.1|WP_004183475.1|500425_501583_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>NZ_CP012568.1|WP_023302145.1|501566_502322_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAISELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP012568.1|WP_002895648.1|502314_503037_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP012568.1|WP_004152853.1|502978_503701_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP012568.1|WP_002895652.1|503787_504000_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP012568.1|WP_002895655.1|504411_506433_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP012568.1|WP_004147680.1|506681_507779_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

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Crispr_ID: NZ_CP012568_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012568_2

3514852-3515137

Orphan

Consensus_repeat	Method
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012568_2

>merge|NZ_CP012568|2|3514852-3515137|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCGCGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAAGGTGAAACTGACCGATGAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCTTTCTCCGCTATTCGAATAGCAAAGACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCT

>NZ_CP012568|2|1|3514852-3515137|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCG	CGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAAGGTGAAA
CTGACCGATGAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCT	TTCTCCGCTATTCGAATAGCAAAGACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAA
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012568.1\|WP_002917920.1\|3509696_3510089_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP012568.1\|WP_002917925.1\|3512697_3513399_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP012568.1\|WP_002917917.1\|3508659_3509058_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP012568.1\|WP_004888294.1\|3518529_3519861_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP012568.1\|WP_004144865.1\|3511696_3512593_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP012568.1\|WP_004149907.1\|3513664_3514075_-\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|226203
NZ_CP012568.1\|WP_004144878.1\|3522025_3522889_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP012568.1\|WP_040168746.1\|3517732_3518503_-\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NZ_CP012568.1\|WP_002917918.1\|3509054_3509351_+\|YqjK-like-family-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP012568.1\|WP_002917952.1\|3516815_3517706_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NZ_CP012568.1\|WP_002918214.1\|3526030_3526606_+\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP012568.1\|WP_023284319.1\|3515605_3516751_-\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
NZ_CP012568.1\|WP_002917922.1\|3510173_3511160_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP012568.1\|WP_002917960.1\|3520253_3521825_+\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NZ_CP012568.1\|WP_002918211.1\|3525430_3526021_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP012568.1\|WP_002917923.1\|3511286_3511655_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP012568.1\|WP_002917926.1\|3513423_3513591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012568.1\|WP_004150939.1\|3514380_3514845_+\|OB-fold-putative-lipoprotein	unknown	unknown	gnl\|CDD\|378982
NZ_CP012568.1\|WP_020802042.1\|3522952_3525061_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP012568.1\|WP_002918206.1\|3525018_3525405_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119

Protein	Function_ID	Function_description	E-value
NZ_CP012568.1\|WP_002917920.1\|3509696_3510089_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.0965e-24
NZ_CP012568.1\|WP_002917925.1\|3512697_3513399_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.76429e-64
NZ_CP012568.1\|WP_002917917.1\|3508659_3509058_+\|phage-holin-family-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	1.16468e-44
NZ_CP012568.1\|WP_004888294.1\|3518529_3519861_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.25852e-131
NZ_CP012568.1\|WP_004144865.1\|3511696_3512593_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.52e-52
NZ_CP012568.1\|WP_004149907.1\|3513664_3514075_-\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|226203	COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism].	8.17264e-19
NZ_CP012568.1\|WP_004144878.1\|3522025_3522889_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP012568.1\|WP_040168746.1\|3517732_3518503_-\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NZ_CP012568.1\|WP_002917918.1\|3509054_3509351_+\|YqjK-like-family-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	1.48395e-22
NZ_CP012568.1\|WP_002917952.1\|3516815_3517706_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NZ_CP012568.1\|WP_002918214.1\|3526030_3526606_+\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.07708e-116
NZ_CP012568.1\|WP_023284319.1\|3515605_3516751_-\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
NZ_CP012568.1\|WP_002917922.1\|3510173_3511160_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP012568.1\|WP_002917960.1\|3520253_3521825_+\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NZ_CP012568.1\|WP_002918211.1\|3525430_3526021_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	2.29713e-142
NZ_CP012568.1\|WP_002917923.1\|3511286_3511655_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.36085e-39
NZ_CP012568.1\|WP_004150939.1\|3514380_3514845_+\|OB-fold-putative-lipoprotein	gnl\|CDD\|378982	pfam12869, tRNA_anti-like, tRNA_anti-like. This is a family of bacterial, archeael and viral proteins that is related to the tRNA_anti family pfam01336. The major characteristic of families like tRNA_anti is their OB-fold, and many of them bind DNA.	3.01553e-44
NZ_CP012568.1\|WP_020802042.1\|3522952_3525061_+\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	4.36981e-121
NZ_CP012568.1\|WP_002918206.1\|3525018_3525405_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	6.84829e-53

>NZ_CP012568.1|WP_004150939.1|3514380_3514845_+|OB-fold-putative-lipoprotein
MLLRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK
>NZ_CP012568.1|WP_004149907.1|3513664_3514075_-|Spy/CpxP-family-protein-refolding-chaperone
MKLITRIAFATLLTTGFSITAQAADVKAAPAPAQDPIVQHLKLTNDQVAKIKSLHQQLESNVQQISQQEIKDGALINVIDSGKWDEKAVNDQLAAFSKIDQQVRYYRVKYYFEVNKVLTPEQRTQVKKDLADALSE
>NZ_CP012568.1|WP_002917926.1|3513423_3513591_+|hypothetical-protein
MSKKKNRKKASPTPLAPVQPQVAGAASFGYDEMLSELEAIVAEAEIRLRDEESLA
>NZ_CP012568.1|WP_002917925.1|3512697_3513399_+|pirin-family-protein
MITTRTAKQCGQADFGWLQARYTFSFGHYFDPKLLGFASLRVLNQEVLAPGASFQARTYPKVDILNLILEGEAEYRDSDGNHVQAKAGEALLIATQPGVSYSEHNLSKEQSLTRMQLWLDACPQRENPLQQKINVADATLQLLASPEGGDNSLQLRQQAWVYHIALEKGEQINVQLHGPRAYLQSIHGSVHAVAQEQQKQALTCGDGAFIRDEANITLVADTPLRALLIDLPV
>NZ_CP012568.1|WP_004144865.1|3511696_3512593_-|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
>NZ_CP012568.1|WP_002917923.1|3511286_3511655_+|DUF805-domain-containing-protein
MDWYLKVLKNYIGFGGRARRKEYWMFILVNLILTGVLSIIDKMLGWQRAGGEGILTTIYGVLVFLPWWAVQFRRLHDTDRSAWWLLLLLIPVIGWLVILIFNCQRGTEGNNRFGPDPKPFSY
>NZ_CP012568.1|WP_002917922.1|3510173_3511160_+|glutathione-S-transferase-family-protein
MGQLVDGVWQDTWYDTKSTGGRFKRSVSAFRNWLTADGAAGPSGEGGFAAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFLPVSVVNPLMLENGWTFDDSFPEATGDTLYQHDFLYQLYLHADPHYTGRVTVPVLWDKKQQTIVSNESAEIIRMFNTAFDGLGARAGDYYPPALREQIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVDAVFTSLERLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKRRISDYLNLYGFLRDIYQMPGIAETVSFPHIRHHYYRSHKTINPTGIISIGPQQDLNEPHGRDQRFR
>NZ_CP012568.1|WP_002917920.1|3509696_3510089_+|DoxX-family-protein
MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGALLPLTILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTIAGGYLLLAITGPGAFSIDRVLNKKW
>NZ_CP012568.1|WP_002917918.1|3509054_3509351_+|YqjK-like-family-protein
MNGRQERERQKTQLLRQIQQQRLELSACRRHWHEATAPLDRGWHTLLSLRSWLMVGSGLMAVWSVRHPHFLMRWTKRGLGLWSTWRLVRGILRQSAVR
>NZ_CP012568.1|WP_002917917.1|3508659_3509058_+|phage-holin-family-protein
MANTQHTQGPGQRVFSIGQRIVTLLVEMVETRLRLVVVELEEEKANLFQLLIMTGLTLLFAAFGLMSLLVLVIWAVDAQYRLHVMIATTVVLLLAAAIVGILTLRKARRSTLLRLTRKELENDRALLEEDKS
>NZ_CP012568.1|WP_023284319.1|3515605_3516751_-|glycerate-2-kinase
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSLPVADGGEGTVEAMIAATQGKEHFAWVTGPLGERVKACWGMSGDGVTAFIEMAAASGLGLVPPDKRNPLITTSRGTGELILQALEHGAERIIIGIGGSATNDGGAGMMQALGARLCDAEGQEIGHGGGSLSRLSRIDLSAIDPRLRDRMIHVACDVTNPLVGEHGASRIFGPQKGATEAMIVELDRNLAHYADVIKTSLQVDVKSIPGAGAAGGMGAALMAFLNAELRSGIEIVTEALKLEEQIHDCSLVVTGEGRLDSQSVHGKVPVGVARVAKKYRKPVIGIAGSLTHDVGVVHQHGIDAVFSVLTSVSTLEEAFRGAFDNIYRASRNIAATLQVGMTTEG
>NZ_CP012568.1|WP_002917952.1|3516815_3517706_-|2-hydroxy-3-oxopropionate-reductase
MTIKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETATTPKAIAEQCEVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>NZ_CP012568.1|WP_040168746.1|3517732_3518503_-|2-dehydro-3-deoxyglucarate-aldolase
MDNAIFPNKFKAALAAHQVQIGCWCALANPISTEVLGLAGFDWLVLDAEHAPNDVTTLIPQLMALKGSSSAQVVRVPTNEPIIIKRMLDIGFYNFLVPFVETAEQAAQAVASTRYPPEGIRGVSVSHRGNMFGTVPDYFAQSNKNISILVQIESQTGVDNVEAIAATEGVDGVFVGPSDLAAALGHLGNAAHPEVQRAIQYIFASAKKHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATHKLADAFKK
>NZ_CP012568.1|WP_004888294.1|3518529_3519861_-|MFS-transporter
MILDSTLDEKKGMPTRYLILLMIFVVTAVNYGDRATLSIAGTEVAKELGLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYSYSLFFWSLFTFLQGFIDVFPLAWAGVSMFFMRFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNAAQYFSLALFSPLLGWLTFALGWEHVFTVMGIIGFVLTIIWVKFVHNPTDHPRMSAAELKYISEGGAVVDMDHKKEATPAAGPKMDYIRQLLTNRMMLGVFFGQYFLNTITWFFLTWFPIYLVQDKGMSILKVGFVASIPALFGFAGGVLGGLFSDYLIGRGCTLTFARKLPIVLGMLLASSIILCNYTASTPLVITLMALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIATPLVIGYIVSELHSFNGALIFVGGSALMMMVCYLFVVGDIKRMELQK
>NZ_CP012568.1|WP_002917960.1|3520253_3521825_+|galactarate-dehydratase
MADIAIRQQSPTAFYIKVDPTDNVAIIVNDRGLTAGTRFPDGLTLVEHIPQGHKVALVDIPAHGEIIRYGEVIGYAVRDIPQGSWIDESLVELPTAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPNYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLQGTEDVKSIPVDSASIVSLQDEKHVGFKSMVDDILQVAERHLAKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGRKLFEFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>NZ_CP012568.1|WP_004144878.1|3522025_3522889_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQHESADNSQGQLYIVPTPIGNLSDITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLKEGQNIALVSDAGTPLINDPGYHLVRTCREANIRVVPLPGPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDTLKALEEEPRTLIFYESTHRLVESLEDICAVLGESRYVVLARELTKTWESIHGAPIGELVAWVKEDENRRKGEMVLIVEGFKAQEEALPAAALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQGE
>NZ_CP012568.1|WP_020802042.1|3522952_3525061_+|penicillin-binding-protein-activator
MVPSTFLRSKPARCLPVLLATLIFAGCGTHTQDQSAAFMQGTSQANSSFYLQQMQQSTNDSKTNWQLLAIRALLQEGKKQQAIDLFNQLPANLNSTQAREQSLLAVEVKLAQNDYQAARNLLAKIDPTNLEQPQQARYWQAQIDASQGKPSLTLLRALIAQQPLLSDAKQRQKNIDATWQALTSMPQDQANALVINADENILQGWLDLQRMWFDNRNDPTLLKAGVKDWQTRYPQNPGAKMLPTALVNMQNYKPASINKIALFLPLNGQASIFGRTIQQGFEAAKNGAPSVTGSAVPAQVAQAANVSGNDDVVSPSQAEISDLTATGSRADPVQAPTQDQAAPAAEPAAQAPATSTTPQTTASPATQPVTAPAAQPQPVVATAANPSAELKIYDTTSQPISQLLAQAQQDGATLVVGPLLKENVEEVIKSNTPLNVLALNQPEKVESRANLCYFALSPEDEARDAARHIHQQGKQTPLLLVPRGALGDRVVSAFADEWLKLGGASVLQQRFGSTAELRAGVNGGGGIALSGTPVSTLPSAQNSILGSADEMPVSSGGSVDAAYILATPEQIAYIKPMIAMRNGSQSNVTLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGSNPSLMQQALSAVRNDYSLARLYAMGADAWSLANHFTQMRQTPGFELNGNTGDLTANQDCVINRKLSWLKYQQGKIVPAS
>NZ_CP012568.1|WP_002918206.1|3525018_3525405_+|YraN-family-protein
MAQVPAGKNRSGQLSKQTGDAWENQARRWLEGQGLRFIAANARERGGEIDLIMRDGTVTVFIEVRYRRSARYGDAAASVTPQKQQRLLKAARLWLCRQNGSFETVDCRFDVVAFTGNDIQWLKNAFGE
>NZ_CP012568.1|WP_002918211.1|3525430_3526021_+|DnaA-initiator-associating-protein-DiaA
MLDRIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPGLPAIALNTDNVVLTAIANDRLHDEIYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>NZ_CP012568.1|WP_002918214.1|3526030_3526606_+|divisome-associated-lipoprotein-YraP
MKALSPLAILLSALLLQGCVAAAVVGTAAVGTKAATDPRTVGTQVDDSTLELRVNSALSKDEQIKKQARINVTAYQGKVLLTGQSPTPDLSARAKQIAMGVEGTTEVFNEVRQGQPIGLGTASSDTWITTKVRSQLLSTDQVKSSNVKVTTENSEVFLMGLVTDREGRAAADIASRVSGVSRVTTAFTYIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP012568_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012568_3

4937617-4937702

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012568_3

>merge|NZ_CP012568|3|4937617-4937702|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP012568|3|2|4937617-4937702|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012568.1\|WP_002888373.1\|4951623_4952391_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP012568.1\|WP_002888329.1\|4930368_4931655_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP012568.1\|WP_002888345.1\|4937799_4939164_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP012568.1\|WP_002888337.1\|4935161_4935860_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP012568.1\|WP_002888347.1\|4939343_4939883_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP012568.1\|WP_004178574.1\|4940629_4943536_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP012568.1\|WP_002888323.1\|4928175_4928553_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP012568.1\|WP_004177424.1\|4947089_4948592_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP012568.1\|WP_004177427.1\|4939957_4940617_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP012568.1\|WP_023342998.1\|4948602_4950312_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP012568.1\|WP_004177431.1\|4927322_4928171_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP012568.1\|WP_023343000.1\|4929373_4930363_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP012568.1\|WP_016531719.1\|4946256_4946952_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP012568.1\|WP_004147026.1\|4931709_4934058_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP012568.1\|WP_002888324.1\|4928555_4929377_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP012568.1\|WP_004145972.1\|4950649_4951495_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP012568.1\|WP_002888320.1\|4926249_4926729_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP012568.1\|WP_023302315.1\|4935849_4937475_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP012568.1\|WP_058842857.1\|4934301_4935129_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP012568.1\|WP_023342999.1\|4943723_4946081_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595

Protein	Function_ID	Function_description	E-value
NZ_CP012568.1\|WP_002888373.1\|4951623_4952391_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP012568.1\|WP_002888329.1\|4930368_4931655_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP012568.1\|WP_002888345.1\|4937799_4939164_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP012568.1\|WP_002888337.1\|4935161_4935860_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP012568.1\|WP_002888347.1\|4939343_4939883_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP012568.1\|WP_004178574.1\|4940629_4943536_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP012568.1\|WP_002888323.1\|4928175_4928553_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP012568.1\|WP_004177424.1\|4947089_4948592_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP012568.1\|WP_004177427.1\|4939957_4940617_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_CP012568.1\|WP_023342998.1\|4948602_4950312_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP012568.1\|WP_004177431.1\|4927322_4928171_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP012568.1\|WP_023343000.1\|4929373_4930363_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP012568.1\|WP_016531719.1\|4946256_4946952_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP012568.1\|WP_004147026.1\|4931709_4934058_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP012568.1\|WP_002888324.1\|4928555_4929377_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP012568.1\|WP_004145972.1\|4950649_4951495_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP012568.1\|WP_002888320.1\|4926249_4926729_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP012568.1\|WP_023302315.1\|4935849_4937475_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
NZ_CP012568.1\|WP_058842857.1\|4934301_4935129_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	7.71378e-164
NZ_CP012568.1\|WP_023342999.1\|4943723_4946081_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0

>NZ_CP012568.1|WP_023302315.1|4935849_4937475_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP012568.1|WP_002888337.1|4935161_4935860_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP012568.1|WP_058842857.1|4934301_4935129_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDTATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP012568.1|WP_004147026.1|4931709_4934058_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP012568.1|WP_002888329.1|4930368_4931655_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP012568.1|WP_023343000.1|4929373_4930363_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP012568.1|WP_002888324.1|4928555_4929377_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP012568.1|WP_002888323.1|4928175_4928553_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP012568.1|WP_004177431.1|4927322_4928171_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP012568.1|WP_002888320.1|4926249_4926729_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP012568.1|WP_002888345.1|4937799_4939164_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP012568.1|WP_002888347.1|4939343_4939883_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP012568.1|WP_004177427.1|4939957_4940617_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP012568.1|WP_004178574.1|4940629_4943536_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP012568.1|WP_023342999.1|4943723_4946081_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP012568.1|WP_016531719.1|4946256_4946952_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP012568.1|WP_004177424.1|4947089_4948592_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP012568.1|WP_023342998.1|4948602_4950312_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP012568.1|WP_004145972.1|4950649_4951495_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP012568.1|WP_002888373.1|4951623_4952391_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

98540 : 143487

Cronobacter_phage(27.08%)

head,tRNA,coat,terminase,tail,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004143010.1\|98540_99926_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004143016.1\|99971_100184_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|100185_101052_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_071531921.1\|102523_102859_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_040182114.1\|102860_103079_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
WP_040182113.1\|103075_103603_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
WP_040182112.1\|103631_104255_-	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	5.8e-57	59.2
WP_040182110.1\|104251_104998_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.7
WP_040182107.1\|105014_105299_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-40	81.9
WP_019704100.1\|105388_105583_-	hypothetical protein	NA	NA	NA	NA
WP_074183191.1\|105575_105701_-	hypothetical protein	NA	NA	NA	NA
WP_004178796.1\|106084_107017_-	hypothetical protein	K7PGT0	Enterobacteria_phage	1.9e-91	55.5
WP_004178798.1\|107013_107487_-	hypothetical protein	K7PLT9	Enterobacteria_phage	1.1e-52	58.5
WP_032429930.1\|107736_108459_-	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	9.4e-75	63.2
WP_004194000.1\|108527_108755_+	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	1.9e-18	61.2
WP_001548453.1\|108794_109016_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_065807611.1\|109101_109956_+	replication protein	K7PGT1	Enterobacteria_phage	2.8e-62	54.8
WP_065807612.1\|109940_110813_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	3.8e-94	69.4
WP_012542626.1\|110809_111103_+	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
WP_162899465.1\|111105_111555_+	hypothetical protein	R9TME7	Aeromonas_phage	7.5e-06	31.7
WP_065807614.1\|111551_111788_+	hypothetical protein	S4TVX5	Salmonella_phage	1.5e-13	50.0
WP_065807615.1\|111780_112320_+	hypothetical protein	A0A1V0E5L5	Salmonella_phage	9.3e-19	37.6
WP_009308003.1\|112319_112496_+	hypothetical protein	NA	NA	NA	NA
WP_077269010.1\|112996_113473_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.0e-13	35.4
WP_004191566.1\|113879_114476_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.3
WP_071854273.1\|114481_114649_+	NinE family protein	NA	NA	NA	NA
WP_065807617.1\|114645_115314_+	metallophosphoesterase	K7P6H8	Enterobacteria_phage	4.1e-101	76.0
WP_065807618.1\|115306_115915_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.3e-50	65.7
WP_065807619.1\|115911_116142_+	hypothetical protein	NA	NA	NA	NA
WP_004136182.1\|116138_116279_+	YlcG family protein	NA	NA	NA	NA
WP_065807620.1\|116275_116965_+	antiterminator	I6PDF8	Cronobacter_phage	1.1e-56	54.9
WP_012967717.1\|117739_118054_+	hypothetical protein	H6WRZ3	Salmonella_phage	8.3e-44	86.1
WP_040181191.1\|118056_118560_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_040181192.1\|118556_119024_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
WP_087749278.1\|119026_119164_+	hypothetical protein	NA	NA	NA	NA
WP_069377345.1\|119232_119883_+	hypothetical protein	G8C7P2	Escherichia_phage	6.2e-102	89.4
WP_040181332.1\|119879_121448_+\|terminase	terminase	G8C7P3	Escherichia_phage	2.4e-301	91.2
WP_040181330.1\|121459_122908_+	hypothetical protein	F1C5D7	Cronobacter_phage	2.1e-118	51.0
WP_087749279.1\|122825_123839_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.8e-116	69.7
WP_020804668.1\|123835_124039_-	hypothetical protein	NA	NA	NA	NA
WP_040181327.1\|124089_125445_+	hypothetical protein	F1C5D9	Cronobacter_phage	5.1e-130	53.1
WP_016529582.1\|125444_125906_+	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
WP_040027496.1\|125902_126958_+\|coat	phage coat protein	A0A291AXD4	Shigella_phage	2.2e-101	53.2
WP_029884066.1\|126990_127230_+	hypothetical protein	NA	NA	NA	NA
WP_032439723.1\|127232_127613_+	hypothetical protein	F1C5E2	Cronobacter_phage	4.1e-29	54.5
WP_038434988.1\|127612_127786_+	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-12	51.8
WP_040181321.1\|127785_128148_+	hypothetical protein	G0ZNE2	Cronobacter_phage	1.6e-27	50.8
WP_040181318.1\|128150_128519_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.9e-47	82.0
WP_023339086.1\|128515_128899_+	hypothetical protein	NA	NA	NA	NA
WP_023283367.1\|128957_129722_+	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	2.7e-40	43.8
WP_040181312.1\|129790_130504_+	hypothetical protein	G0ZNE7	Cronobacter_phage	2.1e-63	54.6
WP_040181310.1\|130721_131279_+	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	6.7e-89	88.2
WP_023339090.1\|131425_131623_+	hypothetical protein	NA	NA	NA	NA
WP_052450973.1\|131591_132065_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_040181307.1\|132160_132499_+	hypothetical protein	H6WRV3	Salmonella_phage	1.0e-31	57.3
WP_071854270.1\|132554_133025_+	hypothetical protein	NA	NA	NA	NA
WP_040181305.1\|133116_135687_+\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	8.5e-94	40.3
WP_040181302.1\|135727_135907_+	hypothetical protein	NA	NA	NA	NA
WP_071854269.1\|135926_136340_-	hypothetical protein	G0ZNE8	Cronobacter_phage	5.0e-65	89.8
WP_023283377.1\|136453_136930_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
WP_004196571.1\|136929_137400_+	hypothetical protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
WP_040181295.1\|137396_137792_+	C40 family peptidase	F1C5F2	Cronobacter_phage	4.7e-36	54.8
WP_040186451.1\|137778_140256_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
WP_071854268.1\|142341_143142_+	hypothetical protein	NA	NA	NA	NA
WP_040181289.1\|143247_143487_+	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9

DBSCAN-SWA_2

625078 : 634552

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|625078_626194_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|626190_628131_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896516.1\|628207_628429_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|628754_629072_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|629102_631382_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|631512_631731_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_023302126.1\|632084_632786_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_023302125.1\|632830_634552_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_3

873560 : 943175

Enterobacteria_phage(50.0%)

head,portal,tRNA,plate,integrase,terminase,tail,capsid

attL 900756:900773|attR 937931:937948

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004150803.1\|873560_874667_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004150802.1\|874723_875182_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004150801.1\|875198_875849_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150800.1\|876089_877340_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004213085.1\|877612_878326_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150798.1\|878322_878715_-	amino acid-binding protein	NA	NA	NA	NA
WP_004150797.1\|878707_879031_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_048263900.1\|879119_879326_-	hypothetical protein	NA	NA	NA	NA
WP_019704434.1\|879273_879459_+	hypothetical protein	NA	NA	NA	NA
WP_004140530.1\|879479_879707_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004140529.1\|879819_881013_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_137013050.1\|881228_881417_-	hypothetical protein	NA	NA	NA	NA
WP_004150795.1\|881636_881822_+	general stress protein	NA	NA	NA	NA
WP_004148027.1\|881912_882407_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140514.1\|882433_882940_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004179357.1\|882956_883844_+	manganese catalase family protein	NA	NA	NA	NA
WP_004140511.1\|883899_885306_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004183659.1\|885302_886313_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140506.1\|886428_886626_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|887192_887825_+	DNA-binding protein	NA	NA	NA	NA
WP_032409986.1\|887864_888044_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|888441_889128_+	EAL domain-containing protein	NA	NA	NA	NA
WP_020804938.1\|889240_889405_-	hypothetical protein	NA	NA	NA	NA
WP_023302066.1\|889438_890947_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_021313530.1\|891067_891958_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023302065.1\|891964_893749_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004140494.1\|893822_895031_-	HD domain-containing protein	NA	NA	NA	NA
WP_069377336.1\|895333_896377_+	type II asparaginase	NA	NA	NA	NA
WP_023302064.1\|897038_897953_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150783.1\|898042_898681_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004140489.1\|898811_899075_+	DUF2534 family protein	NA	NA	NA	NA
WP_004140488.1\|899134_899260_-	hypothetical protein	NA	NA	NA	NA
WP_004892898.1\|899377_899452_-	protein YoaJ	NA	NA	NA	NA
WP_004150782.1\|899451_899553_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_004176549.1\|899610_900624_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
900756:900773	attL	NA	NA	NA	NA
WP_040181453.1\|900888_901872_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.4e-150	79.8
WP_004213095.1\|901987_902287_-	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_020806130.1\|902407_902686_+	regulatory phage cox family protein	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_004216643.1\|902706_902925_+	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_040181449.1\|902940_903318_+	hypothetical protein	NA	NA	NA	NA
WP_023329526.1\|903333_903606_+	hypothetical protein	NA	NA	NA	NA
WP_004213098.1\|903674_903899_+	hypothetical protein	NA	NA	NA	NA
WP_023329528.1\|903895_904462_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	33.2
WP_040181444.1\|904694_905651_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
WP_162899463.1\|905668_907720_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	6.2e-188	52.3
WP_040181442.1\|908540_910811_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_040181440.1\|910810_911602_-	hypothetical protein	NA	NA	NA	NA
WP_048289843.1\|912446_913508_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	68.1
WP_040181438.1\|913501_915229_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
WP_040181436.1\|915385_916225_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_023328071.1\|916234_917269_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
WP_040181433.1\|917318_918176_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	9.8e-71	61.3
WP_040181431.1\|918288_918804_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
WP_004131559.1\|918803_919004_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_004213110.1\|918994_919279_+	hypothetical protein	NA	NA	NA	NA
WP_023339943.1\|919275_919821_+	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_158246032.1\|920007_920343_+	peptidase	B6SD31	Bacteriophage	2.1e-05	33.3
WP_040181428.1\|920343_920811_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
WP_020316957.1\|920807_921443_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
WP_009486481.1\|921439_922027_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
WP_040181426.1\|922023_922374_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
WP_023300878.1\|922375_923299_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_040181424.1\|923288_926315_+\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_023339950.1\|926311_926524_+	hypothetical protein	NA	NA	NA	NA
WP_040181419.1\|926523_927621_+\|tail	phage tail protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
WP_052450975.1\|928220_929444_+	DUF262 domain-containing protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
WP_040181417.1\|929461_930124_+	hypothetical protein	NA	NA	NA	NA
WP_040181415.1\|930587_931061_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
WP_040181412.1\|931076_934052_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.0e-219	46.4
WP_071591910.1\|934038_934176_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	4.4e-10	65.9
WP_004131585.1\|934196_934514_-	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_004216461.1\|934559_935075_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_071854307.1\|935043_936246_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	3.3e-157	70.7
WP_040181406.1\|936400_937540_+	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	72.3
WP_004213128.1\|937583_937835_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_004176548.1\|938099_938339_+	DUF333 domain-containing protein	NA	NA	NA	NA
937931:937948	attR	NA	NA	NA	NA
WP_014343000.1\|938328_938667_-	DUF488 family protein	NA	NA	NA	NA
WP_020802835.1\|938671_939181_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004140471.1\|939326_940019_+	CTP synthase	NA	NA	NA	NA
WP_020324105.1\|940050_941226_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140469.1\|941333_942128_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002901080.1\|942111_942558_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004892876.1\|942674_943175_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_4

1097723 : 1187249

Klebsiella_phage(63.46%)

protease,head,portal,plate,tRNA,integrase,holin,terminase,tail,capsid

attL 1093439:1093454|attR 1116032:1116047

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1093439:1093454	attL	NA	NA	NA	NA
WP_023285032.1\|1097723_1098485_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.1
WP_004224331.1\|1098701_1100234_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.5e-21	30.0
WP_016197745.1\|1100432_1100981_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_040186739.1\|1101177_1102359_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	1.3e-201	84.2
WP_077255525.1\|1102339_1102582_-	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004198245.1\|1102541_1102688_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_103219593.1\|1102760_1103645_-	hypothetical protein	A0A2H4FNA9	Salmonella_phage	5.1e-06	70.6
WP_040186810.1\|1103641_1103866_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.7e-30	94.6
WP_032415174.1\|1103855_1104581_-	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	1.4e-131	99.6
WP_040186812.1\|1104586_1105105_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	9.4e-93	97.7
WP_040186814.1\|1105145_1105586_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	7.5e-59	80.8
WP_004177208.1\|1105582_1105801_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_040186816.1\|1105772_1106027_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	1.4e-36	89.3
WP_023304721.1\|1106019_1106385_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	5.8e-57	97.5
WP_004177202.1\|1106385_1106610_-	hypothetical protein	NA	NA	NA	NA
WP_040182568.1\|1106792_1107206_-	hypothetical protein	NA	NA	NA	NA
WP_029602970.1\|1107369_1108029_-	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	9.4e-98	79.5
WP_071854265.1\|1108184_1108418_+	helix-turn-helix domain-containing protein	A0A1B5FPK9	Escherichia_phage	4.9e-17	63.9
WP_040182571.1\|1109088_1109457_+	hypothetical protein	A0A286S263	Klebsiella_phage	6.7e-53	82.8
WP_048322137.1\|1109498_1111157_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	97.5
WP_071854264.1\|1111158_1112121_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	3.1e-182	98.8
WP_040182574.1\|1112117_1112900_+	antitermination protein	F1C595	Cronobacter_phage	6.5e-114	79.1
WP_004184721.1\|1113053_1113311_+	hypothetical protein	A0A286N2Q3	Klebsiella_phage	1.3e-42	100.0
WP_031280381.1\|1113216_1113663_-	hypothetical protein	NA	NA	NA	NA
WP_017145563.1\|1114225_1114621_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
WP_019705280.1\|1114607_1114889_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
WP_023304728.1\|1114888_1115518_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	6.9e-106	90.9
WP_040182576.1\|1115525_1115801_+	hypothetical protein	G8C7W1	Escherichia_phage	9.9e-09	41.6
WP_031591489.1\|1116036_1116321_-	hypothetical protein	NA	NA	NA	NA
1116032:1116047	attR	NA	NA	NA	NA
WP_023304730.1\|1116453_1116726_+	hypothetical protein	NA	NA	NA	NA
WP_032408647.1\|1117050_1117287_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-31	94.9
WP_071854263.1\|1117367_1117574_+	DUF551 domain-containing protein	A0A286N2R2	Klebsiella_phage	1.1e-33	97.1
WP_040182580.1\|1117644_1117935_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	2.9e-51	94.8
WP_040182582.1\|1117947_1118157_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	2.4e-23	84.1
WP_004143905.1\|1118278_1118713_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_004143904.1\|1118722_1120255_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_017880221.1\|1120257_1121535_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_077255528.1\|1121540_1122221_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	2.7e-124	99.6
WP_040186862.1\|1122232_1123396_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.8e-211	99.2
WP_044067369.1\|1123432_1123675_+	hypothetical protein	NA	NA	NA	NA
WP_040186860.1\|1123622_1123949_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	9.8e-56	99.1
WP_004899632.1\|1124009_1124207_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
WP_040186341.1\|1124208_1124541_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	1.0e-55	98.2
WP_004216814.1\|1124533_1125073_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	3.0e-94	99.4
WP_000561415.1\|1125069_1125435_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_000115125.1\|1125490_1125982_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_001177591.1\|1126025_1126379_+\|tail	phage tail assembly chaperone family protein, TAC	A0A286S1N4	Klebsiella_phage	4.9e-61	99.1
WP_004143895.1\|1126411_1126675_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	5.9e-43	98.8
WP_004143894.1\|1126740_1127208_+	hypothetical protein	NA	NA	NA	NA
WP_040182604.1\|1127252_1129700_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	5.9e-278	66.5
WP_004899614.1\|1129699_1130179_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_040182606.1\|1130165_1130648_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	6.0e-86	98.8
WP_004152651.1\|1130657_1131038_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_048322138.1\|1131034_1134103_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.2
WP_040186352.1\|1136152_1136953_+	hypothetical protein	NA	NA	NA	NA
WP_019705237.1\|1138054_1138303_-	DinI-like family protein	S5MQI1	Escherichia_phage	1.0e-25	70.4
WP_004176434.1\|1139148_1139640_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_023302033.1\|1139682_1141227_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004179544.1\|1141236_1142580_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004176431.1\|1142576_1143266_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_021440002.1\|1143262_1144969_+	OmpA family protein	NA	NA	NA	NA
WP_002902160.1\|1144973_1145465_+	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_023302030.1\|1145729_1148384_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	7.7e-98	33.4
WP_024623002.1\|1148385_1150755_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.4e-18	33.0
WP_021440005.1\|1150758_1151535_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_023302028.1\|1151559_1152090_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_040181976.1\|1152077_1154477_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_040181978.1\|1154519_1154777_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_021440008.1\|1154725_1155907_+	hypothetical protein	NA	NA	NA	NA
WP_021440009.1\|1155896_1159346_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_004183804.1\|1159342_1160935_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_021440010.1\|1161013_1162768_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004176418.1\|1162731_1163817_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_040181981.1\|1163794_1164337_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009309032.1\|1164464_1164959_+	hypothetical protein	NA	NA	NA	NA
WP_023302022.1\|1165025_1165739_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_021440012.1\|1165812_1166406_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004151596.1\|1166410_1167166_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_004151595.1\|1167324_1168203_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004179576.1\|1168253_1168460_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_021440014.1\|1168485_1169415_-	aromatic alcohol reductase	NA	NA	NA	NA
WP_004190483.1\|1169559_1170465_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_052455031.1\|1170484_1170799_-	hypothetical protein	NA	NA	NA	NA
WP_020324664.1\|1171495_1172365_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_024622999.1\|1172357_1173269_+	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_004179582.1\|1173323_1173872_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004179583.1\|1173960_1174995_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_023285056.1\|1175039_1176215_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002902393.1\|1176435_1177242_+	methionine-binding protein	NA	NA	NA	NA
WP_004892563.1\|1178255_1178924_+	ABC transporter permease	NA	NA	NA	NA
WP_019705261.1\|1179991_1180738_+	hypothetical protein	NA	NA	NA	NA
WP_004176404.1\|1180850_1181045_-	hypothetical protein	NA	NA	NA	NA
WP_023302016.1\|1181281_1182400_-	oxidoreductase	NA	NA	NA	NA
WP_023302015.1\|1182362_1183106_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.0e-15	30.1
WP_004148192.1\|1183385_1184369_+	zinc transporter ZntB	NA	NA	NA	NA
WP_004151591.1\|1184894_1186268_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-53	32.3
WP_002902422.1\|1186313_1187249_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0

DBSCAN-SWA_5

1361915 : 1372803

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|1361915_1362536_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_032423485.1\|1362528_1363794_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002903955.1\|1363805_1364708_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|1364969_1365731_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_001620095.1\|1365751_1366612_-	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_004176262.1\|1366909_1367170_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_040182017.1\|1367256_1368345_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
WP_004176258.1\|1368375_1369641_-	MFS transporter	NA	NA	NA	NA
WP_040182019.1\|1369695_1372803_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_6

2029415 : 2081551

uncultured_Caudovirales_phage(40.0%)

tail,tRNA,plate,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004891136.1\|2029415_2030672_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|2030942_2031554_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_014343188.1\|2031553_2032402_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|2032585_2033533_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004189412.1\|2033657_2035337_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.0e-23	23.4
WP_023301802.1\|2035338_2036385_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|2036605_2036881_-	stress-induced protein YchH	NA	NA	NA	NA
WP_009307591.1\|2037153_2037738_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|2037855_2038947_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_004145442.1\|2039027_2039357_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|2039440_2040355_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009307590.1\|2040486_2041902_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_004152261.1\|2041921_2042365_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004184604.1\|2042367_2042904_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152910.1\|2042884_2043901_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_069377385.1\|2043930_2045694_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_023301801.1\|2045827_2049244_-	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_029499423.1\|2050473_2050731_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_032413757.1\|2050756_2051164_-	hypothetical protein	NA	NA	NA	NA
WP_004148791.1\|2051656_2052553_-	hypothetical protein	NA	NA	NA	NA
WP_023342696.1\|2052567_2054595_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JIA8	uncultured_Caudovirales_phage	2.6e-74	31.6
WP_009307584.1\|2054597_2057225_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.3e-17	31.5
WP_009307583.1\|2057683_2059381_-	OmpA family protein	NA	NA	NA	NA
WP_004175498.1\|2059384_2060038_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009307582.1\|2060034_2061375_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002910650.1\|2061940_2062270_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_002910652.1\|2062384_2062924_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|2062949_2063648_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_040181240.1\|2063839_2064322_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_040181238.1\|2065296_2065614_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-22	52.0
WP_064172271.1\|2065613_2065853_-	hypothetical protein	K7P7N3	Enterobacteria_phage	1.4e-14	50.6
WP_071854259.1\|2065957_2066758_-	hypothetical protein	NA	NA	NA	NA
WP_119183683.1\|2066767_2068750_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.2e-26	27.6
WP_069377383.1\|2068768_2069542_-	hypothetical protein	A0A248SL44	Klebsiella_phage	8.6e-26	49.2
WP_040181232.1\|2069541_2070315_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.8e-68	51.0
WP_065807624.1\|2070311_2071511_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	5.8e-162	75.3
WP_048289810.1\|2071510_2071864_-	bacteriophage protein	A0A2H4J629	uncultured_Caudovirales_phage	3.0e-50	78.6
WP_065807623.1\|2071860_2072517_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	1.7e-83	64.8
WP_050008892.1\|2072739_2073096_+	hypothetical protein	NA	NA	NA	NA
WP_065807629.1\|2073107_2073416_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.4e-35	90.9
WP_065807621.1\|2073451_2074513_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.1e-139	69.9
WP_074422975.1\|2074515_2074743_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.3e-17	49.3
WP_065802512.1\|2074818_2075394_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.7e-66	71.2
WP_065802509.1\|2075393_2077391_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	7.5e-231	61.7
WP_065802507.1\|2077380_2077533_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	1.0e-15	76.0
WP_065802505.1\|2077574_2077994_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	3.0e-41	66.7
WP_023312781.1\|2077997_2078441_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	80.0
WP_065802503.1\|2078450_2079596_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.3e-166	77.7
WP_004152176.1\|2079599_2080040_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_065519890.1\|2080134_2080521_-\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	5.8e-47	75.8
WP_064151821.1\|2080520_2081135_-	hypothetical protein	NA	NA	NA	NA
WP_065802501.1\|2081131_2081551_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	4.4e-40	60.7

DBSCAN-SWA_7

2090655 : 2122126

Salmonella_phage(27.03%)

lysis,integrase,terminase

attL 2083643:2083659|attR 2100210:2100226

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2083643:2083659	attL	NA	NA	NA	NA
WP_071854257.1\|2090655_2091180_-	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	1.4e-14	43.7
WP_048265733.1\|2091965_2092178_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_064162991.1\|2092301_2093531_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1V0E8G8	Vibrio_phage	3.6e-74	40.5
WP_040181205.1\|2094120_2094615_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.1e-49	61.5
WP_040181203.1\|2094618_2095821_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.3e-107	52.8
WP_025714258.1\|2095830_2096025_-	hypothetical protein	NA	NA	NA	NA
WP_025714257.1\|2096070_2096619_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
WP_039108763.1\|2096674_2098126_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	7.2e-191	68.4
WP_040181195.1\|2098363_2099764_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	7.2e-188	69.2
WP_074422973.1\|2099714_2100203_-	hypothetical protein	NA	NA	NA	NA
WP_087749278.1\|2100559_2100697_-	hypothetical protein	NA	NA	NA	NA
2100210:2100226	attR	NA	NA	NA	NA
WP_040181192.1\|2100699_2101167_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
WP_040181191.1\|2101163_2101667_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_012967717.1\|2101669_2101984_-	hypothetical protein	H6WRZ3	Salmonella_phage	8.3e-44	86.1
WP_065807620.1\|2102758_2103448_-	antiterminator	I6PDF8	Cronobacter_phage	1.1e-56	54.9
WP_004136182.1\|2103444_2103585_-	YlcG family protein	NA	NA	NA	NA
WP_065807619.1\|2103581_2103812_-	hypothetical protein	NA	NA	NA	NA
WP_065807618.1\|2103808_2104417_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.3e-50	65.7
WP_065807617.1\|2104409_2105078_-	metallophosphoesterase	K7P6H8	Enterobacteria_phage	4.1e-101	76.0
WP_071854273.1\|2105074_2105242_-	NinE family protein	NA	NA	NA	NA
WP_004191566.1\|2105247_2105844_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.3
WP_077269010.1\|2106250_2106727_-	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.0e-13	35.4
WP_009308003.1\|2107227_2107404_-	hypothetical protein	NA	NA	NA	NA
WP_065807615.1\|2107403_2107943_-	hypothetical protein	A0A1V0E5L5	Salmonella_phage	9.3e-19	37.6
WP_065807614.1\|2107935_2108172_-	hypothetical protein	S4TVX5	Salmonella_phage	1.5e-13	50.0
WP_162899465.1\|2108168_2108618_-	hypothetical protein	R9TME7	Aeromonas_phage	7.5e-06	31.7
WP_012542626.1\|2108620_2108914_-	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
WP_065807612.1\|2108910_2109783_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	3.8e-94	69.4
WP_001548453.1\|2110705_2110927_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004191589.1\|2110967_2111186_-	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	1.4e-13	50.7
WP_021312733.1\|2111294_2111954_+	helix-turn-helix domain-containing protein	K7P7K3	Enterobacteria_phage	1.9e-69	61.5
WP_004219883.1\|2112332_2112458_+	hypothetical protein	NA	NA	NA	NA
WP_008807814.1\|2112450_2112657_+	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_040181687.1\|2112737_2113022_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.3e-39	78.7
WP_040181685.1\|2113037_2113883_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
WP_124072215.1\|2114050_2114500_+	hypothetical protein	A0A221SAP1	Ralstonia_phage	1.0e-18	52.6
WP_040181683.1\|2114492_2115179_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
WP_016529279.1\|2115175_2115334_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_024264482.1\|2115330_2115858_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
WP_040181679.1\|2115854_2116625_+	hypothetical protein	D5LH17	Escherichia_phage	3.2e-65	51.0
WP_065802489.1\|2116841_2117606_+	hypothetical protein	Q71T76	Escherichia_phage	3.0e-71	58.3
WP_040218332.1\|2117602_2117794_+	DUF1382 family protein	G9L698	Escherichia_phage	1.3e-12	64.4
WP_032431536.1\|2117790_2118000_+	hypothetical protein	NA	NA	NA	NA
WP_009483816.1\|2117996_2118215_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.6e-12	52.2
WP_040181674.1\|2118218_2118464_+	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
WP_021312745.1\|2118506_2119769_+	DUF3596 domain-containing protein	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
WP_074183181.1\|2120009_2120819_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004175494.1\|2120830_2122126_-	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8

DBSCAN-SWA_8

2457343 : 2464248

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004149058.1\|2457343_2458822_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
WP_004175198.1\|2458818_2459541_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004144192.1\|2459859_2461221_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004151134.1\|2461463_2462360_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004180550.1\|2462600_2463374_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004175147.1\|2463384_2464248_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_9

2663145 : 2728301

Klebsiella_phage(53.19%)

head,portal,terminase,tRNA,integrase,holin,protease,tail,capsid

attL 2685876:2685899|attR 2725329:2725352

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009307375.1\|2663145_2663958_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_002913227.1\|2663957_2664971_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_009307374.1\|2665034_2666171_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.6e-20	27.8
WP_023282884.1\|2666281_2667259_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_004149211.1\|2667345_2668521_-	MFS transporter	NA	NA	NA	NA
WP_002913291.1\|2668730_2669951_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_023301691.1\|2670109_2672098_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002913338.1\|2672159_2672441_-	YfcL family protein	NA	NA	NA	NA
WP_002913339.1\|2672472_2673021_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_002913340.1\|2673020_2673830_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_004174960.1\|2673829_2674654_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_023287874.1\|2674656_2675742_-	chorismate synthase	A0A291AU41	Pandoravirus	7.7e-89	46.6
WP_069377392.1\|2675783_2676716_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002913348.1\|2676883_2677435_+	endonuclease SmrB	NA	NA	NA	NA
WP_002913355.1\|2677455_2677941_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_004174952.1\|2678150_2680295_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_002913358.1\|2680294_2681605_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_002913359.1\|2681764_2682049_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_002913360.1\|2682422_2683745_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_002913362.1\|2683806_2684568_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_004149224.1\|2684857_2685787_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	6.7e-134	81.4
2685876:2685899	attL	NA	NA	NA	NA
WP_032422721.1\|2685993_2686365_-	hypothetical protein	K7PGV5	Enterobacterial_phage	9.2e-26	50.9
WP_019705521.1\|2686321_2686561_-	hypothetical protein	I6PD82	Cronobacter_phage	1.5e-21	55.7
WP_077255527.1\|2687111_2687564_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_019705523.1\|2687653_2688013_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_040181868.1\|2689358_2690159_-	hypothetical protein	NA	NA	NA	NA
WP_065802474.1\|2692204_2695273_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.7
WP_064184941.1\|2695269_2695650_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-69	96.0
WP_064184942.1\|2695659_2696142_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.9e-85	98.8
WP_004899614.1\|2696128_2696608_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_064184943.1\|2696607_2699142_-\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.4
WP_133060711.1\|2699190_2699568_-	hypothetical protein	NA	NA	NA	NA
WP_004104224.1\|2699626_2699890_-	hypothetical protein	A0A286S1P2	Klebsiella_phage	3.0e-39	91.9
WP_004899623.1\|2699892_2700276_-\|tail	phage tail assembly chaperone family protein, TAC	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
WP_000115125.1\|2700319_2700811_-	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_000561415.1\|2700867_2701233_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_064184944.1\|2701229_2701769_-	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	2.3e-94	99.4
WP_064184945.1\|2701761_2702094_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	1.5e-56	99.1
WP_004143899.1\|2702095_2702293_-	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_017880223.1\|2702353_2702680_-\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_133060710.1\|2702627_2702870_-	hypothetical protein	NA	NA	NA	NA
WP_064184946.1\|2702906_2704070_-\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	7.7e-212	99.7
WP_077269009.1\|2704081_2704762_-\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
WP_017880221.1\|2704767_2706045_-\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_004143904.1\|2706047_2707580_-\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_064184913.1\|2707589_2708024_-	hypothetical protein	A0A286S1P9	Klebsiella_phage	2.4e-73	99.3
WP_004216880.1\|2708145_2708355_-	hypothetical protein	A0A286N2R4	Klebsiella_phage	2.6e-25	87.0
WP_042950190.1\|2708367_2708658_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.7e-51	94.8
WP_042950192.1\|2708714_2708936_-	hypothetical protein	NA	NA	NA	NA
WP_004216876.1\|2709002_2709248_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_064184914.1\|2709324_2710617_-	hypothetical protein	NA	NA	NA	NA
WP_106493672.1\|2710613_2711036_-	hypothetical protein	NA	NA	NA	NA
WP_052454910.1\|2711191_2711389_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	7.3e-22	84.5
WP_064184915.1\|2711339_2711615_-	hypothetical protein	G8C7W1	Escherichia_phage	2.1e-22	65.2
WP_064184916.1\|2711611_2711959_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.7e-38	78.3
WP_064184917.1\|2711955_2712495_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.1e-99	96.6
WP_024176410.1\|2712491_2712791_-\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_064184918.1\|2712960_2713200_-	hypothetical protein	NA	NA	NA	NA
WP_064184919.1\|2713351_2713930_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.9e-49	55.6
WP_071854253.1\|2713943_2714924_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-134	66.9
WP_000779146.1\|2714936_2715314_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_049006283.1\|2715323_2716133_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.5e-110	69.3
WP_069377391.1\|2716129_2717098_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.6e-85	66.0
WP_001208720.1\|2717087_2717267_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_004213338.1\|2717504_2717966_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_024176406.1\|2717991_2718201_-	cell division protein	NA	NA	NA	NA
WP_019705289.1\|2718295_2718940_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
WP_040149782.1\|2719328_2719628_+	hypothetical protein	NA	NA	NA	NA
WP_064184923.1\|2719627_2720413_+	hypothetical protein	C7BGF1	Burkholderia_phage	8.1e-64	53.3
WP_048270910.1\|2720540_2720951_+	hypothetical protein	NA	NA	NA	NA
WP_064184924.1\|2721228_2721969_+	hypothetical protein	R9TPK2	Aeromonas_phage	2.5e-30	97.3
WP_004141386.1\|2721968_2722181_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_064184925.1\|2722177_2722786_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.8e-48	82.4
WP_064184926.1\|2722993_2723932_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	5.8e-08	31.7
WP_064184927.1\|2723964_2725134_-\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.1e-200	85.5
WP_004174945.1\|2725652_2726135_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
2725329:2725352	attR	NA	NA	NA	NA
WP_023301636.1\|2726501_2727383_+	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_004149227.1\|2727392_2728301_-	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012570

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 111036

112

Salmonella_phage(90.72%)

integrase,tail,terminase,portal

attL 15680:15698|attR 98536:98554

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014342073.1\|0_1218_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.3e-73	47.3
WP_014342074.1\|1669_1882_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_019704552.1\|1881_2217_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.1e-37	67.6
WP_014342076.1\|2579_2756_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.7e-12	68.8
WP_019704549.1\|4005_4272_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
WP_014342079.1\|4271_5216_-	exonuclease	J9Q7S6	Salmonella_phage	1.1e-171	93.0
WP_032439699.1\|5276_6284_-	hypothetical protein	J9Q7Z3	Salmonella_phage	5.4e-145	88.6
WP_032439785.1\|6403_6835_-	hypothetical protein	J9Q6I8	Salmonella_phage	3.4e-64	91.4
WP_032439697.1\|6985_7633_+	hypothetical protein	NA	NA	NA	NA
WP_032439695.1\|7737_8712_+	FRG domain-containing protein	NA	NA	NA	NA
WP_072199362.1\|8811_9237_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-56	80.9
WP_060613611.1\|9251_12770_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	93.2
WP_032439780.1\|12950_14183_-	AAA family ATPase	J9Q733	Salmonella_phage	2.2e-212	86.4
WP_071854283.1\|14279_16559_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	5.0e-247	63.1
15680:15698	attL	NA	NA	NA	NA
WP_014342091.1\|17160_17541_+	transcriptional regulator	NA	NA	NA	NA
WP_032439777.1\|17535_18636_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	9.4e-18	30.0
WP_019704541.1\|18985_19345_+	hypothetical protein	NA	NA	NA	NA
WP_014342093.1\|19409_19820_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_014342094.1\|19829_20435_-	hypothetical protein	NA	NA	NA	NA
WP_026005930.1\|20529_20775_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.3e-14	47.4
WP_014342096.1\|20905_21679_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.1e-89	65.0
WP_014342097.1\|21919_23509_+	hypothetical protein	NA	NA	NA	NA
WP_179235152.1\|24676_24919_-	hypothetical protein	NA	NA	NA	NA
WP_014342103.1\|25066_25282_-	hypothetical protein	J9Q6I3	Salmonella_phage	3.2e-23	77.1
WP_014342104.1\|25265_25430_-	hypothetical protein	J9Q729	Salmonella_phage	6.7e-13	72.5
WP_014342105.1\|25441_26764_-	putative DNA ligase	J9Q7G5	Salmonella_phage	4.8e-226	85.2
WP_050484893.1\|26763_27231_-	hypothetical protein	J9Q7R9	Salmonella_phage	7.5e-49	63.9
WP_032439773.1\|27310_28099_-	hypothetical protein	J9Q7Z0	Salmonella_phage	6.9e-71	51.1
WP_032439771.1\|28387_29554_+	hypothetical protein	NA	NA	NA	NA
WP_072196452.1\|29596_30721_-	DNA primase	J9Q720	Salmonella_phage	6.3e-203	91.6
WP_014342110.1\|30868_32209_-	AAA family ATPase	J9Q7G4	Salmonella_phage	7.0e-241	95.7
WP_014342111.1\|32273_32999_-	hypothetical protein	J9Q7R8	Salmonella_phage	1.3e-127	88.4
WP_032439768.1\|33181_33592_-	hypothetical protein	J9Q6F2	Salmonella_phage	9.2e-19	38.6
WP_174565794.1\|33584_34352_-	hypothetical protein	J9Q719	Salmonella_phage	6.6e-18	42.9
WP_014342115.1\|34424_34781_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_014342116.1\|34786_35452_-	AAA family ATPase	J9Q7R7	Salmonella_phage	8.3e-102	83.3
WP_072199352.1\|35691_36213_+	hypothetical protein	NA	NA	NA	NA
WP_032439763.1\|36415_36667_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.2e-24	74.7
WP_032439761.1\|36669_37362_-	membrane protein	J9Q7Y7	Salmonella_phage	1.2e-119	89.1
WP_004109805.1\|37375_37699_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_032439760.1\|37794_39240_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	1.3e-38	37.1
WP_019704527.1\|51477_52089_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1
WP_004109817.1\|52076_52874_-	C40 family peptidase	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_071854284.1\|52866_53565_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.0
WP_032439754.1\|53651_53987_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-51	83.6
WP_048292502.1\|54030_58566_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	69.7
WP_014342129.1\|58573_58798_-	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
WP_004109835.1\|58923_59241_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_004109839.1\|59302_60049_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
WP_014342130.1\|60116_60509_-	hypothetical protein	J9Q6D8	Salmonella_phage	5.3e-48	69.0
WP_004109845.1\|60510_60984_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_004109848.1\|60974_61319_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
WP_032439750.1\|61416_62250_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.2e-131	84.1
WP_021313129.1\|62249_62684_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
WP_014342134.1\|62731_63160_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
WP_004109857.1\|63238_64117_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_014342135.1\|64143_65043_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
WP_048292499.1\|65065_66640_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	2.8e-273	88.2
WP_004109863.1\|66672_67929_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_004109866.1\|67931_68573_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109869.1\|68748_69015_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_004109872.1\|69024_69915_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
WP_019704585.1\|69920_70175_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	96.4
WP_019704584.1\|70167_70806_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.4e-109	97.6
WP_014342142.1\|70802_71471_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.9e-106	91.4
WP_050484892.1\|71470_72175_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.8e-108	89.3
WP_071854285.1\|72234_73794_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	4.4e-279	92.5
WP_014342145.1\|73796_74072_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.0e-26	68.1
WP_019704582.1\|74122_74560_-	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
WP_014342147.1\|74715_75246_+	transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-71	84.5
WP_148722482.1\|75255_75555_+	hypothetical protein	NA	NA	NA	NA
WP_004109892.1\|75879_76530_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
WP_004109904.1\|76580_76784_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
WP_021313140.1\|77375_77858_-	hypothetical protein	J9Q805	Salmonella_phage	1.3e-64	70.6
WP_032439735.1\|78083_78272_+	hypothetical protein	E5FFJ6	Burkholderia_phage	1.1e-11	61.1
WP_032439733.1\|78299_78581_-	ABC transporter	J9Q753	Salmonella_phage	5.3e-42	83.9
WP_032439731.1\|78707_79115_-	hypothetical protein	NA	NA	NA	NA
WP_072199357.1\|79234_79534_-	hypothetical protein	J9Q7T7	Salmonella_phage	5.0e-30	68.7
WP_023279445.1\|79682_79895_-	hypothetical protein	J9Q804	Salmonella_phage	4.4e-25	77.9
WP_019704577.1\|79907_80126_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
WP_019704576.1\|81676_82903_-	hypothetical protein	J9Q803	Salmonella_phage	1.6e-119	54.2
WP_019704575.1\|83073_83391_-	hypothetical protein	J9Q750	Salmonella_phage	9.2e-43	74.3
WP_019704574.1\|84005_84752_+	NYN domain-containing protein	NA	NA	NA	NA
WP_071786700.1\|84896_85325_-	GFA family protein	NA	NA	NA	NA
WP_019704573.1\|85598_85958_-	hypothetical protein	NA	NA	NA	NA
WP_019704572.1\|86204_86468_-	hypothetical protein	J9Q7T5	Salmonella_phage	1.7e-29	70.5
WP_019704571.1\|86619_87321_-	hypothetical protein	J9Q6K2	Salmonella_phage	3.0e-78	69.7
WP_071854286.1\|87409_89095_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	91.1
WP_019704569.1\|89223_89802_-	hypothetical protein	J9Q7H6	Salmonella_phage	3.9e-55	57.0
WP_019704568.1\|89929_90085_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.3e-05	61.2
WP_019704567.1\|90084_90510_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
WP_023343110.1\|90810_91350_-	hypothetical protein	J9Q6J9	Salmonella_phage	6.4e-28	46.0
WP_019704565.1\|91507_92095_-	ribonuclease HI	J9Q745	Salmonella_phage	3.4e-91	80.2
WP_019704564.1\|92667_92901_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.7e-31	84.2
WP_071854287.1\|93098_93692_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.2e-96	83.8
WP_019704562.1\|93876_94710_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.2e-62	53.1
WP_014342174.1\|94835_95393_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.4e-86	84.2
WP_023279504.1\|95402_95822_-	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
WP_014342176.1\|95885_96530_-	AAA family ATPase	J9Q7H4	Salmonella_phage	6.8e-93	76.6
WP_019704561.1\|96529_97006_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	1.9e-71	79.0
WP_162899470.1\|97002_97398_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.6e-50	74.8
WP_014342179.1\|97417_98521_-	thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
WP_014342180.1\|98714_99590_-	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	4.5e-140	84.7
98536:98554	attR	NA	NA	NA	NA
WP_014342181.1\|99667_100810_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
WP_071854289.1\|100940_103244_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.8
WP_014342183.1\|103319_103889_-	hypothetical protein	J9Q7Z7	Salmonella_phage	3.8e-95	90.5
WP_014342184.1\|103898_104609_-	hypothetical protein	J9Q6J5	Salmonella_phage	2.8e-71	57.6
WP_019704556.1\|104634_106551_-	AAA family ATPase	J9Q741	Salmonella_phage	3.3e-300	84.8
WP_014342187.1\|106547_106781_-	hypothetical protein	J9Q7H1	Salmonella_phage	3.4e-18	66.1
WP_014342188.1\|106780_107866_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	2.0e-182	84.2
WP_019704555.1\|108518_110078_+	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	6.6e-57	52.3
WP_014342193.1\|110391_111036_-	hypothetical protein	J9Q739	Salmonella_phage	8.3e-99	80.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012571

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12798

Escherichia_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011977818.1\|1720_2926_+	AAA family ATPase	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_011977819.1\|2925_3900_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_011977820.1\|3981_5253_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.1e-150	63.3
WP_001568036.1\|5252_5684_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_011977821.1\|5917_6889_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	8.2e-74	46.8
WP_032435767.1\|6891_7563_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|7625_7856_+	hypothetical protein	NA	NA	NA	NA
WP_011977792.1\|8292_8994_+	DNA methylase	A0A2I7RE86	Vibrio_phage	2.4e-27	36.7
WP_001568042.1\|8993_9215_+	hypothetical protein	NA	NA	NA	NA
WP_001568043.1\|9224_9644_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_013214013.1\|9697_10465_+	hypothetical protein	NA	NA	NA	NA
WP_023279469.1\|11144_11573_+	antirestriction protein	NA	NA	NA	NA
WP_011977778.1\|11615_12122_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.2e-07	31.4
WP_001568047.1\|12164_12356_+	hypothetical protein	NA	NA	NA	NA
WP_011977779.1\|12543_12798_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.0e-12	48.8

DBSCAN-SWA_2

15937 : 26442

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152756.1\|15937_16501_+	methyltransferase	M4M9L8	Vibrio_phage	1.7e-18	42.0
WP_023280871.1\|17331_17874_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	4.6e-50	76.7
WP_001568055.1\|17922_18171_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_071854292.1\|18240_20298_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.4e-21	25.2
WP_001568057.1\|20342_20774_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_015065516.1\|20770_21499_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001568059.1\|21495_21822_+	hypothetical protein	NA	NA	NA	NA
WP_020806188.1\|22187_23168_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
WP_019706020.1\|23260_23473_+	hypothetical protein	NA	NA	NA	NA
WP_014343499.1\|23483_23708_+	hypothetical protein	NA	NA	NA	NA
WP_004152720.1\|23788_24109_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
WP_004152721.1\|24098_24377_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
WP_023287139.1\|24377_24791_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004152492.1\|25620_26442_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	1.2e-44	40.1

DBSCAN-SWA_3

55479 : 64993

Virus_Rctr197k(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015065542.1\|55479_60738_+	conjugative transfer relaxase/helicase TraI	A0A1P8DII4	Virus_Rctr197k	8.0e-06	33.8
WP_015065543.1\|60817_61543_+	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	1.2e-05	28.3
WP_015065544.1\|61698_62292_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_071854295.1\|62411_62633_+	hypothetical protein	NA	NA	NA	NA
WP_015065546.1\|62682_63327_+	hypothetical protein	NA	NA	NA	NA
WP_022631529.1\|63382_64033_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_015065549.1\|64029_64338_+	hypothetical protein	K7PKY8	Enterobacterial_phage	1.7e-17	40.4
WP_023157996.1\|64513_64993_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.2e-17	31.7

DBSCAN-SWA_4

71197 : 94286

Escherichia_phage(33.33%)

transposase,integrase

attL 71135:71194|attR 90847:91666

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
71135:71194	attL	NA	NA	NA	NA
WP_001067855.1\|71197_71902_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001247892.1\|74590_74881_+	nucleotidyltransferase	NA	NA	NA	NA
WP_001293886.1\|74877_75279_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_000215515.1\|75268_75625_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000091613.1\|75879_76194_+	hypothetical protein	NA	NA	NA	NA
WP_000509966.1\|77896_78502_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_015632391.1\|79883_82877_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.3e-258	46.6
WP_022631505.1\|82880_83291_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_023356273.1\|83290_83530_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_001389365.1\|83872_84637_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000376623.1\|85143_85644_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|85771_86611_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|86604_86952_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000777554.1\|87655_88129_-	trimethoprim-resistant dihydrofolate reductase DfrA1	G3MBI7	Bacillus_virus	3.7e-19	32.1
WP_001749986.1\|88263_88716_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_000845048.1\|88888_89902_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|90138_90843_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000427623.1\|91397_92402_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
90847:91666	attR	NA	NA	NA	NA
WP_022631502.1\|92816_93017_-	hypothetical protein	NA	NA	NA	NA
WP_004099053.1\|93317_94286_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8

DBSCAN-SWA_5

110582 : 115475

Escherichia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032441952.1\|110582_111605_+\|transposase	IS21-like element ISSen3 family transposase	A0A2L1IVA1	Escherichia_phage	8.7e-175	85.6
WP_001531258.1\|111601_112384_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.1e-136	96.5
WP_015632382.1\|113064_113505_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
WP_004189161.1\|113501_113852_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_014839879.1\|113882_115475_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-175	61.6

DBSCAN-SWA_6

124735 : 125515

Macacine_betaherpesvirus(100.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013214009.1\|124735_125515_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP012572

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10150

Macacine_betaherpesvirus(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000523813.1\|1610_2777_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
WP_004152062.1\|2776_3748_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
WP_014386156.1\|6571_7843_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.5e-155	64.0
WP_004182047.1\|7842_8268_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
WP_004118481.1\|8482_8713_+	hypothetical protein	NA	NA	NA	NA
WP_004118478.1\|9233_9659_+	antirestriction protein	NA	NA	NA	NA
WP_004152754.1\|9895_10150_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0

DBSCAN-SWA_2

13289 : 17650

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152756.1\|13289_13853_+	methyltransferase	M4M9L8	Vibrio_phage	1.7e-18	42.0
WP_071854301.1\|14683_15226_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.5e-50	76.7
WP_014386159.1\|15274_15523_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_014386160.1\|15592_17650_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	9.1e-22	25.4

DBSCAN-SWA_3

21157 : 22126

Salmonella_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074422984.1\|21157_22126_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.8

DBSCAN-SWA_4

25868 : 27017

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014386168.1\|25868_27017_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-24	45.0

DBSCAN-SWA_5

42943 : 43731

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014386179.1\|42943_43384_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.0e-20	62.8
WP_014386180.1\|43380_43731_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.9e-39	63.8

DBSCAN-SWA_6

50433 : 51022

Shigella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014386190.1\|50433_50754_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	3.0e-09	39.5
WP_004152721.1\|50743_51022_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4

DBSCAN-SWA_7

82129 : 91533

Virus_Rctr197k(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071854302.1\|82129_87388_+	conjugative transfer relaxase/helicase TraI	A0A1P8DII4	Virus_Rctr197k	5.2e-05	33.3
WP_014386207.1\|87432_88158_+	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	3.5e-05	27.9
WP_004152380.1\|88229_88823_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_014386209.1\|90009_91533_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.0e-88	38.7

DBSCAN-SWA_8

95305 : 98590

Liberibacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040182250.1\|95305_98590_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.3e-66	27.4

DBSCAN-SWA_9

104992 : 162552

uncultured_Caudovirales_phage(26.32%)

transposase,integrase,holin,protease

attL 120852:120865|attR 163279:163292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064762441.1\|104992_105472_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.4e-18	33.1
WP_004099069.1\|105791_106070_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_014386216.1\|106285_106363_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004099067.1\|106355_107213_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000616807.1\|108201_108855_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|108947_109205_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|109137_109539_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|109675_112573_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_001067855.1\|112842_113547_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152101.1\|113788_114139_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152100.1\|114188_114551_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152099.1\|114568_116320_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152098.1\|116367_117657_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152097.1\|117669_118095_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152096.1\|118127_118664_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152095.1\|120560_120923_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
120852:120865	attL	NA	NA	NA	NA
WP_004182005.1\|120998_121544_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152093.1\|121552_122266_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004152092.1\|122262_122589_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004152091.1\|122920_123418_+	N-acetyltransferase	NA	NA	NA	NA
WP_031944101.1\|123467_123977_-	aquaporin	NA	NA	NA	NA
WP_004152086.1\|125719_125899_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004152085.1\|126130_126565_-	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152084.1\|126781_128182_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_001188930.1\|128178_128859_-	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004118344.1\|128913_129843_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_000025662.1\|129847_130228_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_185157552.1\|130267_131158_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000925242.1\|131163_132981_-	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001023257.1\|133214_133664_+	copper resistance protein	NA	NA	NA	NA
WP_004118669.1\|133952_134690_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_000843497.1\|134723_134921_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004098955.1\|134961_137409_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000758228.1\|137535_137976_-	hypothetical protein	NA	NA	NA	NA
WP_004098958.1\|138062_141209_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_004152079.1\|141219_142512_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_001246153.1\|142625_142979_-	cation efflux system protein CusF	NA	NA	NA	NA
WP_000475512.1\|143007_144393_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001572351.1\|144582_145263_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_003032875.1\|145255_146731_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_004178091.1\|146981_147413_+	silver-binding protein SilE	NA	NA	NA	NA
WP_085955172.1\|148841_150048_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178088.1\|151088_153086_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_004152070.1\|153148_154426_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_080895248.1\|155408_156845_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004197688.1\|157464_157722_+	hypothetical protein	NA	NA	NA	NA
WP_011977741.1\|158394_159363_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.1
WP_071527918.1\|159382_159694_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152065.1\|159720_160668_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_001515717.1\|161811_162552_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
163279:163292	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP012569

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11158 : 52423

Escherichia_phage(21.05%)

integrase,transposase

attL 28050:28066|attR 49562:49578

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000845048.1\|11158_12172_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000237816.1\|12344_12797_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-2	NA	NA	NA	NA
WP_022631163.1\|12877_14131_-	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	3.0e-12	29.7
WP_022631510.1\|14851_15406_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_015632396.1\|15816_16596_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtF1	NA	NA	NA	NA
WP_031281281.1\|18244_18877_-	type B chloramphenicol O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.6e-28	40.9
WP_000376623.1\|19659_20160_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|20666_21431_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|21691_22906_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_072094655.1\|22939_24343_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_071854279.1\|24691_25396_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	4.5e-138	99.6
WP_001348075.1\|25442_25679_-	AAA family ATPase	NA	NA	NA	NA
WP_071854281.1\|25752_26169_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|26165_26396_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_165763053.1\|26352_26814_+	hypothetical protein	NA	NA	NA	NA
WP_015632378.1\|26958_27273_+	hypothetical protein	NA	NA	NA	NA
WP_024191724.1\|27321_27633_+	hypothetical protein	NA	NA	NA	NA
WP_016162067.1\|27697_28702_+	hypothetical protein	NA	NA	NA	NA
28050:28066	attL	NA	NA	NA	NA
WP_032495756.1\|28745_28907_+	hypothetical protein	NA	NA	NA	NA
WP_015632375.1\|28899_29694_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
WP_006788217.1\|30165_30345_-	hypothetical protein	NA	NA	NA	NA
WP_004197649.1\|30464_31091_-	ParA family plasmid-partitioning AAA ATPase	A0A222YXS3	Escherichia_phage	2.9e-40	43.6
WP_004098982.1\|31723_32599_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	5.6e-82	56.4
WP_016162068.1\|33010_34282_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.6e-152	63.0
WP_015632467.1\|34281_34713_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.2e-30	53.7
WP_015632466.1\|35656_36682_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015632465.1\|36867_37086_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_015632464.1\|37085_37391_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_015632463.1\|37535_37880_+	hypothetical protein	NA	NA	NA	NA
WP_015632462.1\|37921_38488_+	hypothetical protein	NA	NA	NA	NA
WP_016162071.1\|38691_38949_-	helix-turn-helix transcriptional regulator	H2DE32	Erwinia_phage	5.1e-07	56.4
WP_016162072.1\|39378_39606_+	hypothetical protein	NA	NA	NA	NA
WP_015632459.1\|39947_40391_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	4.6e-16	33.8
WP_015632458.1\|40416_40599_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	2.0e-05	48.3
WP_015632457.1\|40959_41940_+	partitioning protein	A0A0A7NPX4	Enterobacteria_phage	2.3e-76	49.4
WP_015632456.1\|41932_42361_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_015632455.1\|42513_42972_+	hypothetical protein	NA	NA	NA	NA
WP_015632454.1\|42968_43457_+	transcriptional regulator	NA	NA	NA	NA
WP_015632453.1\|43584_44022_+	hypothetical protein	NA	NA	NA	NA
WP_016162075.1\|44615_44975_+	hypothetical protein	NA	NA	NA	NA
WP_032441934.1\|45118_45298_+	hypothetical protein	NA	NA	NA	NA
WP_015632451.1\|45371_46232_+	DUF4942 domain-containing protein	I6RTT5	Marinomonas_phage	2.8e-17	29.6
WP_015632450.1\|46401_46839_+	antirestriction protein	NA	NA	NA	NA
WP_016162076.1\|47530_47764_+	hypothetical protein	NA	NA	NA	NA
WP_015632449.1\|47817_48138_+	hypothetical protein	NA	NA	NA	NA
WP_015632448.1\|48408_48741_-	hypothetical protein	NA	NA	NA	NA
WP_016162079.1\|49136_49448_+	hypothetical protein	NA	NA	NA	NA
WP_015632446.1\|49450_51379_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
49562:49578	attR	NA	NA	NA	NA
WP_016162080.1\|51419_51671_-	hypothetical protein	NA	NA	NA	NA
WP_016162081.1\|51682_51940_-	hypothetical protein	A0A1B2LRT6	Wolbachia_phage	1.2e-05	41.5
WP_015632445.1\|52015_52423_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.4e-14	40.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage