CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP012567	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-6, complete sequence	0 crisprs	csa3	9
NZ_CP012565	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-4, complete sequence	0 crisprs	DEDDh	1
NZ_CP012566	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-5, complete sequence	0 crisprs	NA	6
NZ_CP012564	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-3, complete sequence	0 crisprs	TnsE_C,WYL,RT	1
NZ_CP012562	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-1, complete sequence	0 crisprs	NA	0
NZ_CP012563	Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-2, complete sequence	0 crisprs	NA	0
NZ_CP012561	Klebsiella pneumoniae strain UCLAOXA232KP chromosome, complete genome	1 crisprs	cas3,csa3,DEDDh,RT,DinG,WYL	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10150

Macacine_betaherpesvirus(40.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000523813.1\|1610_2777_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
WP_004152062.1\|2776_3748_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
WP_014386156.1\|6571_7843_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.5e-155	64.0
WP_004182047.1\|7842_8268_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
WP_004118481.1\|8482_8713_+	hypothetical protein	NA	NA	NA	NA
WP_004118478.1\|9233_9659_+	antirestriction protein	NA	NA	NA	NA
WP_004152754.1\|9895_10150_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0

DBSCAN-SWA_2

13289 : 17650

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152756.1\|13289_13853_+	methyltransferase	M4M9L8	Vibrio_phage	1.7e-18	42.0
WP_071854301.1\|14683_15226_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.5e-50	76.7
WP_014386159.1\|15274_15523_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_014386160.1\|15592_17650_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	9.1e-22	25.4

DBSCAN-SWA_3

21157 : 22126

Salmonella_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074422984.1\|21157_22126_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.8

DBSCAN-SWA_4

42942 : 43730

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014386179.1\|42942_43383_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.0e-20	62.8
WP_014386180.1\|43379_43730_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.9e-39	63.8

DBSCAN-SWA_5

50432 : 51021

Shigella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014386190.1\|50432_50753_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	3.0e-09	39.5
WP_004152721.1\|50742_51021_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4

DBSCAN-SWA_6

82128 : 91532

Virus_Rctr197k(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071854302.1\|82128_87387_+	conjugative transfer relaxase/helicase TraI	A0A1P8DII4	Virus_Rctr197k	5.2e-05	33.3
WP_014386207.1\|87431_88157_+	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	3.5e-05	27.9
WP_004152380.1\|88228_88822_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_014386209.1\|90008_91532_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.0e-88	38.7

DBSCAN-SWA_7

95304 : 98589

Liberibacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040182250.1\|95304_98589_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.3e-66	27.4

DBSCAN-SWA_8

104991 : 186372

uncultured_Caudovirales_phage(20.0%)

transposase,protease,holin,integrase

attL 112863:112922|attR 121018:121756

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064762441.1\|104991_105471_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.4e-18	33.1
WP_004099069.1\|105790_106069_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_014386216.1\|106284_106362_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004099067.1\|106354_107212_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000616807.1\|108200_108854_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|108946_109204_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|109136_109538_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|109674_112572_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_001067855.1\|112841_113546_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
112863:112922	attL	NA	NA	NA	NA
WP_000147567.1\|115702_116263_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|116388_116739_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|116941_117955_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063840321.1\|118246_118801_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|118931_119762_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_044117068.1\|120393_121062_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_000427623.1\|121353_122358_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
121018:121756	attR	NA	NA	NA	NA
WP_004217321.1\|123692_124397_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_014386147.1\|125252_126080_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-21	37.6
WP_004152695.1\|126076_126940_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|126948_127776_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|127784_128795_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|128788_129658_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014386148.1\|130866_131847_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
WP_004118209.1\|133048_133312_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|133326_133590_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|133833_134115_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|134149_134719_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|134833_137629_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152115.1\|137628_137826_+	hypothetical protein	NA	NA	NA	NA
WP_009483782.1\|138063_138813_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_004152113.1\|138799_139762_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_020314316.1\|141604_142951_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_003026803.1\|143162_143645_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003026799.1\|143632_143899_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_004152108.1\|144074_144329_-	hypothetical protein	NA	NA	NA	NA
WP_004152107.1\|144404_144662_-	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|144710_144914_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152105.1\|144947_145316_-	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|145359_145854_-	DNA-binding protein	NA	NA	NA	NA
WP_004152103.1\|145884_146460_-	hypothetical protein	NA	NA	NA	NA
WP_004152102.1\|146447_146717_-	hypothetical protein	NA	NA	NA	NA
WP_004152101.1\|147074_147425_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152100.1\|147474_147837_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152099.1\|147854_149606_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152098.1\|149653_150943_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152097.1\|150955_151381_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152096.1\|151413_151950_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152095.1\|153846_154209_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004182005.1\|154284_154830_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152093.1\|154838_155552_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004152092.1\|155548_155875_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004152091.1\|156206_156704_+	N-acetyltransferase	NA	NA	NA	NA
WP_031944101.1\|156753_157263_-	aquaporin	NA	NA	NA	NA
WP_004152086.1\|159005_159185_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004152085.1\|159416_159851_-	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152084.1\|160067_161468_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_001188930.1\|161464_162145_-	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004118344.1\|162199_163129_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_000025662.1\|163133_163514_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_185157552.1\|163553_164444_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000925242.1\|164449_166267_-	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001023257.1\|166500_166950_+	copper resistance protein	NA	NA	NA	NA
WP_004118669.1\|167238_167976_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_000843497.1\|168009_168207_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004098955.1\|168247_170695_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000758228.1\|170821_171262_-	hypothetical protein	NA	NA	NA	NA
WP_004098958.1\|171348_174495_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_004152079.1\|174505_175798_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_001246153.1\|175911_176265_-	cation efflux system protein CusF	NA	NA	NA	NA
WP_000475512.1\|176293_177679_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001572351.1\|177868_178549_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_003032875.1\|178541_180017_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_004178091.1\|180267_180699_+	silver-binding protein SilE	NA	NA	NA	NA
WP_085955172.1\|182127_183334_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178088.1\|184374_186372_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9

DBSCAN-SWA_9

191680 : 195838

Salmonella_phage(33.33%)

transposase,integrase

attL 193777:193788|attR 196533:196544

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011977741.1\|191680_192649_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.1
WP_071527918.1\|192668_192980_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152065.1\|193006_193954_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
193777:193788	attL	NA	NA	NA	NA
WP_001515717.1\|195097_195838_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_001515717.1\|195097_195838_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
196533:196544	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012561

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012561_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012561_1

92977-93071

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012561_1

>merge|NZ_CP012561|1|92977-93071|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP012561|1|1|92977-93071|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012561.1\|WP_002888323.1\|102134_102512_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP012561.1\|WP_002888329.1\|99032_100319_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP012561.1\|WP_023302315.1\|93212_94838_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP012561.1\|WP_004177431.1\|102516_103365_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP012561.1\|WP_004147026.1\|96629_98978_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP012561.1\|WP_004177427.1\|90070_90730_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP012561.1\|WP_004178574.1\|87151_90058_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP012561.1\|WP_023343000.1\|100324_101314_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP012561.1\|WP_002888373.1\|78296_79064_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP012561.1\|WP_002888337.1\|94827_95526_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP012561.1\|WP_004145972.1\|79192_80038_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP012561.1\|WP_002888320.1\|103958_104438_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP012561.1\|WP_016531719.1\|83735_84431_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP012561.1\|WP_002888345.1\|91523_92888_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP012561.1\|WP_058842857.1\|95558_96386_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP012561.1\|WP_002888347.1\|90804_91344_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP012561.1\|WP_023342999.1\|84606_86964_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP012561.1\|WP_004177424.1\|82095_83598_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP012561.1\|WP_002888324.1\|101310_102132_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP012561.1\|WP_023342998.1\|80375_82085_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221

Protein	Function_ID	Function_description	E-value
NZ_CP012561.1\|WP_002888323.1\|102134_102512_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP012561.1\|WP_002888329.1\|99032_100319_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP012561.1\|WP_023302315.1\|93212_94838_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
NZ_CP012561.1\|WP_004177431.1\|102516_103365_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP012561.1\|WP_004147026.1\|96629_98978_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP012561.1\|WP_004177427.1\|90070_90730_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_CP012561.1\|WP_004178574.1\|87151_90058_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP012561.1\|WP_023343000.1\|100324_101314_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP012561.1\|WP_002888373.1\|78296_79064_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP012561.1\|WP_002888337.1\|94827_95526_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP012561.1\|WP_004145972.1\|79192_80038_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP012561.1\|WP_002888320.1\|103958_104438_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP012561.1\|WP_016531719.1\|83735_84431_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP012561.1\|WP_002888345.1\|91523_92888_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP012561.1\|WP_058842857.1\|95558_96386_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	7.71378e-164
NZ_CP012561.1\|WP_002888347.1\|90804_91344_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP012561.1\|WP_023342999.1\|84606_86964_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP012561.1\|WP_004177424.1\|82095_83598_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP012561.1\|WP_002888324.1\|101310_102132_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP012561.1\|WP_023342998.1\|80375_82085_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0

>NZ_CP012561.1|WP_002888345.1|91523_92888_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP012561.1|WP_002888347.1|90804_91344_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP012561.1|WP_004177427.1|90070_90730_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP012561.1|WP_004178574.1|87151_90058_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP012561.1|WP_023342999.1|84606_86964_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP012561.1|WP_016531719.1|83735_84431_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP012561.1|WP_004177424.1|82095_83598_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP012561.1|WP_023342998.1|80375_82085_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP012561.1|WP_004145972.1|79192_80038_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP012561.1|WP_002888373.1|78296_79064_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP012561.1|WP_023302315.1|93212_94838_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP012561.1|WP_002888337.1|94827_95526_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP012561.1|WP_058842857.1|95558_96386_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDTATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP012561.1|WP_004147026.1|96629_98978_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP012561.1|WP_002888329.1|99032_100319_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP012561.1|WP_023343000.1|100324_101314_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP012561.1|WP_002888324.1|101310_102132_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP012561.1|WP_002888323.1|102134_102512_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP012561.1|WP_004177431.1|102516_103365_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP012561.1|WP_002888320.1|103958_104438_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2282332 : 2338480

Klebsiella_phage(54.35%)

portal,integrase,head,tail,capsid,protease,holin,terminase,tRNA

attL 2305332:2305355|attR 2344786:2344809

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004145598.1\|2282332_2283751_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_002913435.1\|2283802_2284195_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002913434.1\|2284198_2284552_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_023301631.1\|2285173_2287345_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002913423.1\|2287393_2288596_-	nucleoside permease NupC	NA	NA	NA	NA
WP_002913421.1\|2288942_2290184_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_004899719.1\|2290241_2290595_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_023301632.1\|2290725_2291718_-	aldo/keto reductase	NA	NA	NA	NA
WP_023301633.1\|2291898_2293560_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_004180794.1\|2293556_2294792_-	ion channel protein	NA	NA	NA	NA
WP_002913377.1\|2295055_2296021_+	glucokinase	NA	NA	NA	NA
WP_002913374.1\|2296074_2296812_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
WP_004149230.1\|2296823_2298521_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
WP_004153200.1\|2298519_2298633_+	hypothetical protein	NA	NA	NA	NA
WP_032409803.1\|2298629_2298815_-	hypothetical protein	NA	NA	NA	NA
WP_002913372.1\|2298903_2300118_+	alanine transaminase	NA	NA	NA	NA
WP_099119320.1\|2300188_2300260_-	membrane protein YpdK	NA	NA	NA	NA
WP_004185022.1\|2300598_2301795_-	cyanate transporter	NA	NA	NA	NA
WP_023301635.1\|2301791_2302250_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	7.2e-12	33.1
WP_004149227.1\|2302382_2303291_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
WP_023301636.1\|2303300_2304182_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_004174945.1\|2304548_2305031_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
2305332:2305355	attL	NA	NA	NA	NA
WP_064184927.1\|2305549_2306719_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.1e-200	85.5
WP_064184926.1\|2306751_2307690_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	5.8e-08	31.7
WP_077255880.1\|2307705_2307891_-	hypothetical protein	G3CFG7	Escherichia_phage	2.4e-14	61.4
WP_064184925.1\|2307898_2308507_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.8e-48	82.4
WP_004141386.1\|2308503_2308716_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_064184924.1\|2308715_2309456_-	hypothetical protein	R9TPK2	Aeromonas_phage	2.5e-30	97.3
WP_048270910.1\|2309733_2310144_-	hypothetical protein	NA	NA	NA	NA
WP_064184923.1\|2310271_2311057_-	hypothetical protein	C7BGF1	Burkholderia_phage	8.1e-64	53.3
WP_040149782.1\|2311056_2311356_-	hypothetical protein	NA	NA	NA	NA
WP_019705289.1\|2311744_2312389_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
WP_024176406.1\|2312483_2312693_+	cell division protein	NA	NA	NA	NA
WP_004213338.1\|2312718_2313180_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_001208720.1\|2313417_2313597_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_069377391.1\|2313586_2314555_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.6e-85	66.0
WP_049006283.1\|2314551_2315361_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.5e-110	69.3
WP_000779146.1\|2315370_2315748_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_071854253.1\|2315760_2316741_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-134	66.9
WP_064184919.1\|2316754_2317333_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.9e-49	55.6
WP_064184918.1\|2317484_2317724_+	hypothetical protein	NA	NA	NA	NA
WP_024176410.1\|2317893_2318193_+\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_064184917.1\|2318189_2318729_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.1e-99	96.6
WP_064184916.1\|2318725_2319073_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.7e-38	78.3
WP_064184915.1\|2319069_2319345_+	hypothetical protein	G8C7W1	Escherichia_phage	2.1e-22	65.2
WP_052454910.1\|2319295_2319493_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	7.3e-22	84.5
WP_106493672.1\|2319648_2320071_+	hypothetical protein	NA	NA	NA	NA
WP_064184914.1\|2320067_2321360_+	hypothetical protein	NA	NA	NA	NA
WP_004216876.1\|2321436_2321682_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_042950192.1\|2321748_2321970_+	hypothetical protein	NA	NA	NA	NA
WP_042950190.1\|2322026_2322317_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.7e-51	94.8
WP_004216880.1\|2322329_2322539_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	2.6e-25	87.0
WP_064184913.1\|2322660_2323095_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	2.4e-73	99.3
WP_004143904.1\|2323104_2324637_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_017880221.1\|2324639_2325917_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_077269009.1\|2325922_2326603_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
WP_064184946.1\|2326614_2327778_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	7.7e-212	99.7
WP_133060710.1\|2327814_2328057_+	hypothetical protein	NA	NA	NA	NA
WP_017880223.1\|2328004_2328331_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_004143899.1\|2328391_2328589_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_064184945.1\|2328590_2328923_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	1.5e-56	99.1
WP_064184944.1\|2328915_2329455_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	2.3e-94	99.4
WP_000561415.1\|2329451_2329817_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_000115125.1\|2329873_2330365_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_004899623.1\|2330408_2330792_+\|tail	phage tail assembly chaperone family protein, TAC	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
WP_004104224.1\|2330794_2331058_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	3.0e-39	91.9
WP_133060711.1\|2331116_2331494_+	hypothetical protein	NA	NA	NA	NA
WP_064184943.1\|2331542_2334077_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.4
WP_004899614.1\|2334076_2334556_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_064184942.1\|2334542_2335025_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.9e-85	98.8
WP_064184941.1\|2335034_2335415_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-69	96.0
WP_065802474.1\|2335411_2338480_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.7
2344786:2344809	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2566435 : 2573340

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|2566435_2567299_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|2567309_2568083_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|2568323_2569220_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|2569462_2570824_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|2571142_2571865_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|2571861_2573340_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

2907356 : 2964189

Salmonella_phage(32.76%)

integrase,head,tail,plate,lysis,terminase

attL 2905527:2905544|attR 2954833:2954850

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2905527:2905544	attL	NA	NA	NA	NA
WP_004175494.1\|2907356_2908652_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_074183181.1\|2908663_2909473_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_040181674.1\|2911017_2911263_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
WP_009483816.1\|2911266_2911485_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.6e-12	52.2
WP_032431536.1\|2911481_2911691_-	hypothetical protein	NA	NA	NA	NA
WP_040218332.1\|2911687_2911879_-	DUF1382 family protein	G9L698	Escherichia_phage	1.3e-12	64.4
WP_065802489.1\|2911875_2912640_-	hypothetical protein	Q71T76	Escherichia_phage	3.0e-71	58.3
WP_040181679.1\|2912856_2913627_-	hypothetical protein	D5LH17	Escherichia_phage	3.2e-65	51.0
WP_024264482.1\|2913623_2914151_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
WP_016529279.1\|2914147_2914306_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_040181683.1\|2914302_2914989_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
WP_124072215.1\|2914981_2915431_-	hypothetical protein	A0A221SAP1	Ralstonia_phage	1.0e-18	52.6
WP_040181685.1\|2915598_2916444_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
WP_040181687.1\|2916459_2916744_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.3e-39	78.7
WP_008807814.1\|2916824_2917031_-	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_004219883.1\|2917023_2917149_-	hypothetical protein	NA	NA	NA	NA
WP_021312733.1\|2917527_2918187_-	helix-turn-helix domain-containing protein	K7P7K3	Enterobacteria_phage	1.9e-69	61.5
WP_004191589.1\|2918295_2918514_+	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	1.4e-13	50.7
WP_001548453.1\|2918554_2918776_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_065807611.1\|2918861_2919716_+	replication protein	K7PGT1	Enterobacteria_phage	2.8e-62	54.8
WP_065807612.1\|2919700_2920573_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	3.8e-94	69.4
WP_012542626.1\|2920569_2920863_+	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
WP_162899465.1\|2920865_2921315_+	hypothetical protein	R9TME7	Aeromonas_phage	7.5e-06	31.7
WP_065807614.1\|2921311_2921548_+	hypothetical protein	S4TVX5	Salmonella_phage	1.5e-13	50.0
WP_065807615.1\|2921540_2922080_+	hypothetical protein	A0A1V0E5L5	Salmonella_phage	9.3e-19	37.6
WP_009308003.1\|2922079_2922256_+	hypothetical protein	NA	NA	NA	NA
WP_077269010.1\|2922756_2923233_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.0e-13	35.4
WP_004191566.1\|2923639_2924236_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.3
WP_071854273.1\|2924241_2924409_+	NinE family protein	NA	NA	NA	NA
WP_065807617.1\|2924405_2925074_+	metallophosphoesterase	K7P6H8	Enterobacteria_phage	4.1e-101	76.0
WP_065807618.1\|2925066_2925675_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.3e-50	65.7
WP_065807619.1\|2925671_2925902_+	hypothetical protein	NA	NA	NA	NA
WP_004136182.1\|2925898_2926039_+	YlcG family protein	NA	NA	NA	NA
WP_065807620.1\|2926035_2926725_+	antiterminator	I6PDF8	Cronobacter_phage	1.1e-56	54.9
WP_012967717.1\|2927499_2927814_+	hypothetical protein	H6WRZ3	Salmonella_phage	8.3e-44	86.1
WP_040181191.1\|2927816_2928320_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_040181192.1\|2928316_2928784_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
WP_087749278.1\|2928786_2928924_+	hypothetical protein	NA	NA	NA	NA
WP_074422973.1\|2929280_2929769_+	hypothetical protein	NA	NA	NA	NA
WP_040181195.1\|2929719_2931120_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	7.2e-188	69.2
WP_039108763.1\|2931357_2932809_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	7.2e-191	68.4
WP_025714257.1\|2932864_2933413_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
WP_025714258.1\|2933458_2933653_+	hypothetical protein	NA	NA	NA	NA
WP_040181203.1\|2933662_2934865_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.3e-107	52.8
WP_040181205.1\|2934868_2935363_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.1e-49	61.5
WP_064162991.1\|2935952_2937182_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1V0E8G8	Vibrio_phage	3.6e-74	40.5
WP_048265733.1\|2937305_2937518_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_071854257.1\|2938303_2938828_+	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	1.4e-14	43.7
WP_069377377.1\|2938820_2939003_+	hypothetical protein	NA	NA	NA	NA
WP_064162993.1\|2938995_2939874_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_064162994.1\|2939866_2940046_+	hypothetical protein	NA	NA	NA	NA
WP_064162995.1\|2940042_2940306_+	hypothetical protein	NA	NA	NA	NA
WP_064162996.1\|2940302_2940521_+	hypothetical protein	NA	NA	NA	NA
WP_071854258.1\|2940526_2940745_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_069377378.1\|2940741_2943087_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	1.3e-146	39.9
WP_069377379.1\|2944091_2944760_+	hypothetical protein	NA	NA	NA	NA
WP_069377380.1\|2945260_2945776_+	hypothetical protein	NA	NA	NA	NA
WP_069377382.1\|2946331_2946850_-	hypothetical protein	NA	NA	NA	NA
WP_040181209.1\|2947684_2947966_+	hypothetical protein	NA	NA	NA	NA
WP_065802501.1\|2947934_2948354_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	4.4e-40	60.7
WP_064151821.1\|2948350_2948965_+	hypothetical protein	NA	NA	NA	NA
WP_065519890.1\|2948964_2949351_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	5.8e-47	75.8
WP_004152176.1\|2949445_2949886_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_065802503.1\|2949889_2951035_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.3e-166	77.7
WP_023312781.1\|2951044_2951488_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	80.0
WP_065802505.1\|2951491_2951911_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	3.0e-41	66.7
WP_065802507.1\|2951952_2952105_+	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	1.0e-15	76.0
WP_065802509.1\|2952094_2954092_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	7.5e-231	61.7
WP_065802512.1\|2954091_2954667_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.7e-66	71.2
WP_074422975.1\|2954742_2954970_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.3e-17	49.3
2954833:2954850	attR	NA	NA	NA	NA
WP_065807621.1\|2954972_2956034_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.1e-139	69.9
WP_065807629.1\|2956069_2956378_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.4e-35	90.9
WP_050008892.1\|2956389_2956746_-	hypothetical protein	NA	NA	NA	NA
WP_065807623.1\|2956968_2957625_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	1.7e-83	64.8
WP_048289810.1\|2957621_2957975_+	bacteriophage protein	A0A2H4J629	uncultured_Caudovirales_phage	3.0e-50	78.6
WP_065807624.1\|2957974_2959174_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	5.8e-162	75.3
WP_040181232.1\|2959170_2959944_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.8e-68	51.0
WP_069377383.1\|2959943_2960717_+	hypothetical protein	A0A248SL44	Klebsiella_phage	8.6e-26	49.2
WP_119183683.1\|2960735_2962718_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.2e-26	27.6
WP_071854259.1\|2962727_2963528_+	hypothetical protein	NA	NA	NA	NA
WP_064172271.1\|2963632_2963872_+	hypothetical protein	K7P7N3	Enterobacteria_phage	1.4e-14	50.6
WP_040181238.1\|2963871_2964189_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-22	52.0

DBSCAN-SWA_4

3656682 : 3667570

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040182019.1\|3656682_3659790_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004176258.1\|3659844_3661110_+	MFS transporter	NA	NA	NA	NA
WP_040182017.1\|3661140_3662229_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
WP_004176262.1\|3662315_3662576_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|3662873_3663734_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|3663754_3664516_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|3664777_3665680_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_032423485.1\|3665691_3666957_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|3666949_3667570_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

3842218 : 3931742

Klebsiella_phage(63.46%)

portal,integrase,head,tail,plate,capsid,protease,holin,terminase,tRNA

attL 3913419:3913434|attR 3936012:3936027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902422.1\|3842218_3843154_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0
WP_004151591.1\|3843199_3844573_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-53	32.3
WP_004148192.1\|3845098_3846082_-	zinc transporter ZntB	NA	NA	NA	NA
WP_023302015.1\|3846361_3847105_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.0e-15	30.1
WP_023302016.1\|3847067_3848186_+	oxidoreductase	NA	NA	NA	NA
WP_004176404.1\|3848422_3848617_+	hypothetical protein	NA	NA	NA	NA
WP_019705261.1\|3848729_3849476_-	hypothetical protein	NA	NA	NA	NA
WP_004892563.1\|3850543_3851212_-	ABC transporter permease	NA	NA	NA	NA
WP_002902393.1\|3852225_3853032_-	methionine-binding protein	NA	NA	NA	NA
WP_023285056.1\|3853252_3854428_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004179583.1\|3854472_3855507_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_004179582.1\|3855595_3856144_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324664.1\|3857101_3857971_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_052455031.1\|3858667_3858982_+	hypothetical protein	NA	NA	NA	NA
WP_004190483.1\|3859001_3859907_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021440014.1\|3860050_3860980_+	aromatic alcohol reductase	NA	NA	NA	NA
WP_004179576.1\|3861005_3861212_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004151595.1\|3861262_3862141_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004151596.1\|3862299_3863055_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_021440012.1\|3863059_3863653_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_023302022.1\|3863726_3864440_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_009309032.1\|3864506_3865001_-	hypothetical protein	NA	NA	NA	NA
WP_040181981.1\|3865128_3865671_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004176418.1\|3865648_3866734_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_021440010.1\|3866697_3868452_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004183804.1\|3868530_3870123_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_021440009.1\|3870119_3873569_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_021440008.1\|3873558_3874740_-	hypothetical protein	NA	NA	NA	NA
WP_040181978.1\|3874688_3874946_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_040181976.1\|3874988_3877388_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_023302028.1\|3877375_3877906_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_021440005.1\|3877930_3878707_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_024623002.1\|3878710_3881080_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.4e-18	33.0
WP_023302030.1\|3881081_3883736_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	7.7e-98	33.4
WP_002902160.1\|3884000_3884492_-	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_021440002.1\|3884496_3886203_-	OmpA family protein	NA	NA	NA	NA
WP_004176431.1\|3886199_3886889_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004179544.1\|3886885_3888229_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_023302033.1\|3888238_3889783_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004176434.1\|3889825_3890317_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_019705237.1\|3891162_3891411_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.0e-25	70.4
WP_040186352.1\|3892512_3893313_-	hypothetical protein	NA	NA	NA	NA
WP_048322138.1\|3895362_3898431_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.2
WP_004152651.1\|3898427_3898808_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_040182606.1\|3898817_3899300_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	6.0e-86	98.8
WP_004899614.1\|3899286_3899766_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_040182604.1\|3899765_3902213_-\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	5.9e-278	66.5
WP_004143894.1\|3902257_3902725_-	hypothetical protein	NA	NA	NA	NA
WP_004143895.1\|3902790_3903054_-	hypothetical protein	A0A286S1P2	Klebsiella_phage	5.9e-43	98.8
WP_001177591.1\|3903086_3903440_-\|tail	phage tail assembly chaperone family protein, TAC	A0A286S1N4	Klebsiella_phage	4.9e-61	99.1
WP_000115125.1\|3903483_3903975_-	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_000561415.1\|3904030_3904396_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_004216814.1\|3904392_3904932_-	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	3.0e-94	99.4
WP_040186341.1\|3904924_3905257_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	1.0e-55	98.2
WP_004899632.1\|3905258_3905456_-	hypothetical protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
WP_040186860.1\|3905516_3905843_-\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	9.8e-56	99.1
WP_044067369.1\|3905790_3906033_-	hypothetical protein	NA	NA	NA	NA
WP_040186862.1\|3906069_3907233_-\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.8e-211	99.2
WP_077255528.1\|3907244_3907925_-\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	2.7e-124	99.6
WP_017880221.1\|3907930_3909208_-\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_004143904.1\|3909210_3910743_-\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_004143905.1\|3910752_3911187_-	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_040182582.1\|3911308_3911518_-	hypothetical protein	A0A286N2R4	Klebsiella_phage	2.4e-23	84.1
WP_040182580.1\|3911530_3911821_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	2.9e-51	94.8
WP_071854263.1\|3911891_3912098_-	DUF551 domain-containing protein	A0A286N2R2	Klebsiella_phage	1.1e-33	97.1
WP_032408647.1\|3912178_3912415_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-31	94.9
WP_023304730.1\|3912739_3913012_-	hypothetical protein	NA	NA	NA	NA
WP_031591489.1\|3913144_3913429_+	hypothetical protein	NA	NA	NA	NA
3913419:3913434	attL	NA	NA	NA	NA
WP_040182576.1\|3913664_3913940_-	hypothetical protein	G8C7W1	Escherichia_phage	9.9e-09	41.6
WP_023304728.1\|3913947_3914577_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	6.9e-106	90.9
WP_019705280.1\|3914576_3914858_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
WP_017145563.1\|3914844_3915240_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
WP_031280381.1\|3915802_3916249_+	hypothetical protein	NA	NA	NA	NA
WP_004184721.1\|3916154_3916412_-	hypothetical protein	A0A286N2Q3	Klebsiella_phage	1.3e-42	100.0
WP_040182574.1\|3916565_3917348_-	antitermination protein	F1C595	Cronobacter_phage	6.5e-114	79.1
WP_071854264.1\|3917344_3918307_-	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	3.1e-182	98.8
WP_048322137.1\|3918308_3919967_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	97.5
WP_040182571.1\|3920008_3920377_-	hypothetical protein	A0A286S263	Klebsiella_phage	6.7e-53	82.8
WP_071854265.1\|3921047_3921281_-	helix-turn-helix domain-containing protein	A0A1B5FPK9	Escherichia_phage	4.9e-17	63.9
WP_029602970.1\|3921436_3922096_+	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	9.4e-98	79.5
WP_040182568.1\|3922259_3922673_+	hypothetical protein	NA	NA	NA	NA
WP_004177202.1\|3922855_3923080_+	hypothetical protein	NA	NA	NA	NA
WP_023304721.1\|3923080_3923446_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	5.8e-57	97.5
WP_040186816.1\|3923438_3923693_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	1.4e-36	89.3
WP_004177208.1\|3923664_3923883_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_040186814.1\|3923879_3924320_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	7.5e-59	80.8
WP_040186812.1\|3924360_3924879_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	9.4e-93	97.7
WP_032415174.1\|3924884_3925610_+	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	1.4e-131	99.6
WP_040186810.1\|3925599_3925824_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.7e-30	94.6
WP_103219593.1\|3925820_3926705_+	hypothetical protein	A0A2H4FNA9	Salmonella_phage	5.1e-06	70.6
WP_004198245.1\|3926777_3926924_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_077255525.1\|3926883_3927126_+	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_040186739.1\|3927106_3928288_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	1.3e-201	84.2
WP_016197745.1\|3928484_3929033_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004224331.1\|3929231_3930764_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.5e-21	30.0
WP_023285032.1\|3930980_3931742_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.1
3936012:3936027	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4086290 : 4132425

Enterobacteria_phage(51.52%)

portal,integrase,head,tail,plate,capsid,tRNA

attL 4091518:4091535|attR 4128691:4128708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|4086290_4086791_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|4086907_4087354_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|4087337_4088132_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|4088239_4089415_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|4089446_4090139_-	CTP synthase	NA	NA	NA	NA
WP_020802835.1\|4090284_4090794_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|4090798_4091137_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|4091126_4091366_-	DUF333 domain-containing protein	NA	NA	NA	NA
4091518:4091535	attL	NA	NA	NA	NA
WP_004213128.1\|4091629_4091881_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_040181406.1\|4091924_4093064_-	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	72.3
WP_040181409.1\|4093218_4094391_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
WP_004216461.1\|4094390_4094906_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_004131585.1\|4094951_4095269_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_071591910.1\|4095289_4095427_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	4.4e-10	65.9
WP_040181412.1\|4095413_4098389_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.0e-219	46.4
WP_040181415.1\|4098404_4098878_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
WP_040181417.1\|4099341_4100004_-	hypothetical protein	NA	NA	NA	NA
WP_052450975.1\|4100021_4101245_-	DUF262 domain-containing protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
WP_040181419.1\|4101844_4102942_-\|tail	phage tail protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
WP_023339950.1\|4102941_4103154_-	hypothetical protein	NA	NA	NA	NA
WP_040181424.1\|4103150_4106177_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_023300878.1\|4106166_4107090_-\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_040181426.1\|4107091_4107442_-	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
WP_009486481.1\|4107438_4108026_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
WP_020316957.1\|4108022_4108658_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
WP_040181428.1\|4108654_4109122_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
WP_158246032.1\|4109122_4109458_-	peptidase	B6SD31	Bacteriophage	2.1e-05	33.3
WP_023339943.1\|4109644_4110190_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|4110186_4110471_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|4110461_4110662_-\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_040181431.1\|4110661_4111177_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
WP_023328071.1\|4112195_4113230_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
WP_040181436.1\|4113239_4114079_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_040181438.1\|4114235_4115963_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
WP_048289843.1\|4115956_4117018_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	68.1
WP_040181440.1\|4117862_4118654_+	hypothetical protein	NA	NA	NA	NA
WP_040181442.1\|4118653_4120924_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_162899463.1\|4121743_4123795_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	6.2e-188	52.3
WP_040181444.1\|4123812_4124769_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
WP_023329528.1\|4125001_4125568_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	33.2
WP_004213098.1\|4125564_4125789_-	hypothetical protein	NA	NA	NA	NA
WP_023329526.1\|4125857_4126130_-	hypothetical protein	NA	NA	NA	NA
WP_040181449.1\|4126145_4126523_-	hypothetical protein	NA	NA	NA	NA
WP_004216643.1\|4126538_4126757_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_020806130.1\|4126777_4127056_-	regulatory phage cox family protein	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_004213095.1\|4127176_4127476_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_040181453.1\|4127591_4128575_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.4e-150	79.8
WP_004176549.1\|4128839_4129853_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
4128691:4128708	attR	NA	NA	NA	NA
WP_004150782.1\|4129910_4130012_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004892898.1\|4130011_4130086_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|4130203_4130329_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|4130388_4130652_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|4130782_4131421_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_023302064.1\|4131510_4132425_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4

DBSCAN-SWA_7

4885980 : 4930926

Cronobacter_phage(27.66%)

head,tail,lysis,coat,terminase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040181289.1\|4885980_4886220_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
WP_071854268.1\|4886325_4887126_-	hypothetical protein	NA	NA	NA	NA
WP_040186451.1\|4889211_4891689_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
WP_040181295.1\|4891675_4892071_-	C40 family peptidase	F1C5F2	Cronobacter_phage	4.7e-36	54.8
WP_004196571.1\|4892067_4892538_-	hypothetical protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
WP_023283377.1\|4892537_4893014_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
WP_071854269.1\|4893127_4893541_+	hypothetical protein	G0ZNE8	Cronobacter_phage	5.0e-65	89.8
WP_040181302.1\|4893560_4893740_-	hypothetical protein	NA	NA	NA	NA
WP_040181305.1\|4893780_4896351_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	8.5e-94	40.3
WP_071854270.1\|4896442_4896913_-	hypothetical protein	NA	NA	NA	NA
WP_040181307.1\|4896968_4897307_-	hypothetical protein	H6WRV3	Salmonella_phage	1.0e-31	57.3
WP_052450973.1\|4897402_4897876_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_023339090.1\|4897844_4898042_-	hypothetical protein	NA	NA	NA	NA
WP_040181310.1\|4898188_4898746_-	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	6.7e-89	88.2
WP_040181312.1\|4898963_4899677_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.1e-63	54.6
WP_023283367.1\|4899745_4900510_-	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	2.7e-40	43.8
WP_023339086.1\|4900568_4900952_-	hypothetical protein	NA	NA	NA	NA
WP_040181318.1\|4900948_4901317_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.9e-47	82.0
WP_040181321.1\|4901319_4901682_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.6e-27	50.8
WP_038434988.1\|4901681_4901855_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-12	51.8
WP_032439723.1\|4901854_4902235_-	hypothetical protein	F1C5E2	Cronobacter_phage	4.1e-29	54.5
WP_029884066.1\|4902237_4902477_-	hypothetical protein	NA	NA	NA	NA
WP_040027496.1\|4902509_4903565_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	2.2e-101	53.2
WP_016529582.1\|4903561_4904023_-	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
WP_040181327.1\|4904022_4905378_-	hypothetical protein	F1C5D9	Cronobacter_phage	5.1e-130	53.1
WP_020804668.1\|4905428_4905632_+	hypothetical protein	NA	NA	NA	NA
WP_087749279.1\|4905628_4906642_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.8e-116	69.7
WP_040181330.1\|4906559_4908008_-	hypothetical protein	F1C5D7	Cronobacter_phage	2.1e-118	51.0
WP_040181332.1\|4908019_4909588_-\|terminase	terminase	G8C7P3	Escherichia_phage	2.4e-301	91.2
WP_069377345.1\|4909584_4910235_-	hypothetical protein	G8C7P2	Escherichia_phage	6.2e-102	89.4
WP_087749278.1\|4910303_4910441_-	hypothetical protein	NA	NA	NA	NA
WP_040181192.1\|4910443_4910911_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
WP_040181191.1\|4910907_4911411_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_012967717.1\|4911413_4911728_-	hypothetical protein	H6WRZ3	Salmonella_phage	8.3e-44	86.1
WP_065807620.1\|4912502_4913192_-	antiterminator	I6PDF8	Cronobacter_phage	1.1e-56	54.9
WP_004136182.1\|4913188_4913329_-	YlcG family protein	NA	NA	NA	NA
WP_065807619.1\|4913325_4913556_-	hypothetical protein	NA	NA	NA	NA
WP_065807618.1\|4913552_4914161_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.3e-50	65.7
WP_065807617.1\|4914153_4914822_-	metallophosphoesterase	K7P6H8	Enterobacteria_phage	4.1e-101	76.0
WP_071854273.1\|4914818_4914986_-	NinE family protein	NA	NA	NA	NA
WP_004191566.1\|4914991_4915588_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.3
WP_077269010.1\|4915994_4916471_-	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.0e-13	35.4
WP_009308003.1\|4916971_4917148_-	hypothetical protein	NA	NA	NA	NA
WP_065807615.1\|4917147_4917687_-	hypothetical protein	A0A1V0E5L5	Salmonella_phage	9.3e-19	37.6
WP_065807614.1\|4917679_4917916_-	hypothetical protein	S4TVX5	Salmonella_phage	1.5e-13	50.0
WP_162899465.1\|4917912_4918362_-	hypothetical protein	R9TME7	Aeromonas_phage	7.5e-06	31.7
WP_012542626.1\|4918364_4918658_-	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
WP_065807612.1\|4918654_4919527_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	3.8e-94	69.4
WP_001548453.1\|4920450_4920672_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004194000.1\|4920711_4920939_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	1.9e-18	61.2
WP_032429930.1\|4921007_4921730_+	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	9.4e-75	63.2
WP_004178798.1\|4921979_4922453_+	hypothetical protein	K7PLT9	Enterobacteria_phage	1.1e-52	58.5
WP_004178796.1\|4922449_4923382_+	hypothetical protein	K7PGT0	Enterobacteria_phage	1.9e-91	55.5
WP_074183191.1\|4923765_4923891_+	hypothetical protein	NA	NA	NA	NA
WP_019704100.1\|4923883_4924078_+	hypothetical protein	NA	NA	NA	NA
WP_040182107.1\|4924167_4924452_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-40	81.9
WP_040182110.1\|4924468_4925215_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.7
WP_040182112.1\|4925211_4925835_+	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	5.8e-57	59.2
WP_040182113.1\|4925863_4926391_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
WP_040182114.1\|4926387_4926606_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
WP_071531921.1\|4926607_4926943_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004143017.1\|4928414_4929281_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|4929282_4929495_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4929540_4930926_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012565

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 107866

110

Salmonella_phage(91.58%)

integrase,terminase,portal,tail

attL 15680:15698|attR 98536:98554

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014342073.1\|0_1218_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.3e-73	47.3
WP_014342074.1\|1669_1882_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_019704552.1\|1881_2217_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.1e-37	67.6
WP_014342076.1\|2579_2756_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.7e-12	68.8
WP_019704549.1\|4005_4272_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
WP_014342079.1\|4271_5216_-	exonuclease	J9Q7S6	Salmonella_phage	1.1e-171	93.0
WP_032439699.1\|5276_6284_-	hypothetical protein	J9Q7Z3	Salmonella_phage	5.4e-145	88.6
WP_032439785.1\|6403_6835_-	hypothetical protein	J9Q6I8	Salmonella_phage	3.4e-64	91.4
WP_032439697.1\|6985_7633_+	hypothetical protein	NA	NA	NA	NA
WP_032439695.1\|7737_8712_+	FRG domain-containing protein	NA	NA	NA	NA
WP_072199362.1\|8811_9237_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-56	80.9
WP_060613611.1\|9251_12770_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	93.2
WP_032439780.1\|12950_14183_-	AAA family ATPase	J9Q733	Salmonella_phage	2.2e-212	86.4
WP_071854283.1\|14279_16559_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	5.0e-247	63.1
15680:15698	attL	NA	NA	NA	NA
WP_014342091.1\|17160_17541_+	transcriptional regulator	NA	NA	NA	NA
WP_032439777.1\|17535_18636_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	9.4e-18	30.0
WP_019704541.1\|18985_19345_+	hypothetical protein	NA	NA	NA	NA
WP_014342093.1\|19409_19820_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_014342094.1\|19829_20435_-	hypothetical protein	NA	NA	NA	NA
WP_026005930.1\|20529_20775_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.3e-14	47.4
WP_014342096.1\|20905_21679_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.1e-89	65.0
WP_014342097.1\|21919_23509_+	hypothetical protein	NA	NA	NA	NA
WP_179235152.1\|24676_24919_-	hypothetical protein	NA	NA	NA	NA
WP_014342103.1\|25066_25282_-	hypothetical protein	J9Q6I3	Salmonella_phage	3.2e-23	77.1
WP_014342104.1\|25265_25430_-	hypothetical protein	J9Q729	Salmonella_phage	6.7e-13	72.5
WP_014342105.1\|25441_26764_-	putative DNA ligase	J9Q7G5	Salmonella_phage	4.8e-226	85.2
WP_050484893.1\|26763_27231_-	hypothetical protein	J9Q7R9	Salmonella_phage	7.5e-49	63.9
WP_032439773.1\|27310_28099_-	hypothetical protein	J9Q7Z0	Salmonella_phage	6.9e-71	51.1
WP_032439771.1\|28387_29554_+	hypothetical protein	NA	NA	NA	NA
WP_072196452.1\|29596_30721_-	DNA primase	J9Q720	Salmonella_phage	6.3e-203	91.6
WP_014342110.1\|30868_32209_-	AAA family ATPase	J9Q7G4	Salmonella_phage	7.0e-241	95.7
WP_014342111.1\|32273_32999_-	hypothetical protein	J9Q7R8	Salmonella_phage	1.3e-127	88.4
WP_032439768.1\|33181_33592_-	hypothetical protein	J9Q6F2	Salmonella_phage	9.2e-19	38.6
WP_174565794.1\|33584_34352_-	hypothetical protein	J9Q719	Salmonella_phage	6.6e-18	42.9
WP_014342115.1\|34424_34781_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_014342116.1\|34786_35452_-	AAA family ATPase	J9Q7R7	Salmonella_phage	8.3e-102	83.3
WP_072199352.1\|35691_36213_+	hypothetical protein	NA	NA	NA	NA
WP_032439763.1\|36415_36667_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.2e-24	74.7
WP_032439761.1\|36669_37362_-	membrane protein	J9Q7Y7	Salmonella_phage	1.2e-119	89.1
WP_004109805.1\|37375_37699_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_032439760.1\|37794_39240_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	1.3e-38	37.1
WP_019704527.1\|51477_52089_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1
WP_004109817.1\|52076_52874_-	C40 family peptidase	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_071854284.1\|52866_53565_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.0
WP_032439754.1\|53651_53987_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-51	83.6
WP_048292502.1\|54030_58566_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	69.7
WP_014342129.1\|58573_58798_-	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
WP_004109835.1\|58923_59241_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_004109839.1\|59302_60049_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
WP_014342130.1\|60116_60509_-	hypothetical protein	J9Q6D8	Salmonella_phage	5.3e-48	69.0
WP_004109845.1\|60510_60984_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_004109848.1\|60974_61319_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
WP_032439750.1\|61416_62250_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.2e-131	84.1
WP_021313129.1\|62249_62684_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
WP_014342134.1\|62731_63160_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
WP_004109857.1\|63238_64117_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_014342135.1\|64143_65043_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
WP_048292499.1\|65065_66640_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	2.8e-273	88.2
WP_004109863.1\|66672_67929_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_004109866.1\|67931_68573_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109869.1\|68748_69015_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_004109872.1\|69024_69915_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
WP_019704585.1\|69920_70175_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	96.4
WP_019704584.1\|70167_70806_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.4e-109	97.6
WP_014342142.1\|70802_71471_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.9e-106	91.4
WP_050484892.1\|71470_72175_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.8e-108	89.3
WP_071854285.1\|72234_73794_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	4.4e-279	92.5
WP_014342145.1\|73796_74072_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.0e-26	68.1
WP_019704582.1\|74122_74560_-	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
WP_014342147.1\|74715_75246_+	transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-71	84.5
WP_148722482.1\|75255_75555_+	hypothetical protein	NA	NA	NA	NA
WP_004109892.1\|75879_76530_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
WP_004109904.1\|76580_76784_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
WP_021313140.1\|77375_77858_-	hypothetical protein	J9Q805	Salmonella_phage	1.3e-64	70.6
WP_032439735.1\|78083_78272_+	hypothetical protein	E5FFJ6	Burkholderia_phage	1.1e-11	61.1
WP_032439733.1\|78299_78581_-	ABC transporter	J9Q753	Salmonella_phage	5.3e-42	83.9
WP_032439731.1\|78707_79115_-	hypothetical protein	NA	NA	NA	NA
WP_072199357.1\|79234_79534_-	hypothetical protein	J9Q7T7	Salmonella_phage	5.0e-30	68.7
WP_023279445.1\|79682_79895_-	hypothetical protein	J9Q804	Salmonella_phage	4.4e-25	77.9
WP_019704577.1\|79907_80126_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
WP_019704576.1\|81676_82903_-	hypothetical protein	J9Q803	Salmonella_phage	1.6e-119	54.2
WP_019704575.1\|83073_83391_-	hypothetical protein	J9Q750	Salmonella_phage	9.2e-43	74.3
WP_019704574.1\|84005_84752_+	NYN domain-containing protein	NA	NA	NA	NA
WP_071786700.1\|84896_85325_-	GFA family protein	NA	NA	NA	NA
WP_019704573.1\|85598_85958_-	hypothetical protein	NA	NA	NA	NA
WP_019704572.1\|86204_86468_-	hypothetical protein	J9Q7T5	Salmonella_phage	1.7e-29	70.5
WP_019704571.1\|86619_87321_-	hypothetical protein	J9Q6K2	Salmonella_phage	3.0e-78	69.7
WP_071854286.1\|87409_89095_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	91.1
WP_019704569.1\|89223_89802_-	hypothetical protein	J9Q7H6	Salmonella_phage	3.9e-55	57.0
WP_019704568.1\|89929_90085_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.3e-05	61.2
WP_019704567.1\|90084_90510_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
WP_023343110.1\|90810_91350_-	hypothetical protein	J9Q6J9	Salmonella_phage	6.4e-28	46.0
WP_019704565.1\|91507_92095_-	ribonuclease HI	J9Q745	Salmonella_phage	3.4e-91	80.2
WP_019704564.1\|92667_92901_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.7e-31	84.2
WP_071854287.1\|93098_93692_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.2e-96	83.8
WP_019704562.1\|93876_94710_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.2e-62	53.1
WP_014342174.1\|94835_95393_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.4e-86	84.2
WP_023279504.1\|95402_95822_-	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
WP_014342176.1\|95885_96530_-	AAA family ATPase	J9Q7H4	Salmonella_phage	6.8e-93	76.6
WP_019704561.1\|96529_97006_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	1.9e-71	79.0
WP_162899470.1\|97002_97398_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.6e-50	74.8
WP_014342179.1\|97417_98521_-	thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
WP_014342180.1\|98714_99590_-	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	4.5e-140	84.7
98536:98554	attR	NA	NA	NA	NA
WP_014342181.1\|99667_100810_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
WP_071854289.1\|100940_103244_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.8
WP_014342183.1\|103319_103889_-	hypothetical protein	J9Q7Z7	Salmonella_phage	3.8e-95	90.5
WP_014342184.1\|103898_104609_-	hypothetical protein	J9Q6J5	Salmonella_phage	2.8e-71	57.6
WP_019704556.1\|104634_106551_-	AAA family ATPase	J9Q741	Salmonella_phage	3.3e-300	84.8
WP_014342187.1\|106547_106781_-	hypothetical protein	J9Q7H1	Salmonella_phage	3.4e-18	66.1
WP_014342188.1\|106780_107866_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	2.0e-182	84.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP012564

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11158 : 41752

Escherichia_phage(35.71%)

integrase,transposase

attL 25444:25458|attR 42475:42489

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000845048.1\|11158_12172_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000237816.1\|12344_12797_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-2	NA	NA	NA	NA
WP_022631163.1\|12877_14131_-	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	3.0e-12	29.7
WP_022631510.1\|14851_15406_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_015632396.1\|15816_16596_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtF1	NA	NA	NA	NA
WP_031281281.1\|18244_18877_-	type B chloramphenicol O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.6e-28	40.9
WP_000376623.1\|19659_20160_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|20666_21431_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|21691_22906_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_072094655.1\|22939_24343_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_071854279.1\|24691_25396_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	4.5e-138	99.6
25444:25458	attL	NA	NA	NA	NA
WP_001393253.1\|28274_28607_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000239590.1\|28653_29529_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001067855.1\|29761_30466_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001348075.1\|30512_30749_-	AAA family ATPase	NA	NA	NA	NA
WP_071854281.1\|30822_31239_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|31235_31466_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_165763053.1\|31422_31884_+	hypothetical protein	NA	NA	NA	NA
WP_015632378.1\|32028_32343_+	hypothetical protein	NA	NA	NA	NA
WP_024191724.1\|32391_32703_+	hypothetical protein	NA	NA	NA	NA
WP_016162067.1\|32767_33772_+	hypothetical protein	NA	NA	NA	NA
WP_032495756.1\|33815_33977_+	hypothetical protein	NA	NA	NA	NA
WP_015632375.1\|33969_34764_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
WP_006788217.1\|35235_35415_-	hypothetical protein	NA	NA	NA	NA
WP_004197649.1\|35534_36161_-	ParA family plasmid-partitioning AAA ATPase	A0A222YXS3	Escherichia_phage	2.9e-40	43.6
WP_004098982.1\|36793_37669_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	5.6e-82	56.4
WP_016162068.1\|38080_39352_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.6e-152	63.0
WP_015632467.1\|39351_39783_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.2e-30	53.7
WP_015632466.1\|40726_41752_-\|transposase	IS110 family transposase	NA	NA	NA	NA
42475:42489	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP012566

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12798

Escherichia_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011977818.1\|1720_2926_+	AAA family ATPase	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_011977819.1\|2925_3900_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_011977820.1\|3981_5253_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.1e-150	63.3
WP_001568036.1\|5252_5684_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_011977821.1\|5917_6889_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	8.2e-74	46.8
WP_032435767.1\|6891_7563_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|7625_7856_+	hypothetical protein	NA	NA	NA	NA
WP_011977792.1\|8292_8994_+	DNA methylase	A0A2I7RE86	Vibrio_phage	2.4e-27	36.7
WP_001568042.1\|8993_9215_+	hypothetical protein	NA	NA	NA	NA
WP_001568043.1\|9224_9644_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_013214013.1\|9697_10465_+	hypothetical protein	NA	NA	NA	NA
WP_023279469.1\|11144_11573_+	antirestriction protein	NA	NA	NA	NA
WP_011977778.1\|11615_12122_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.2e-07	31.4
WP_001568047.1\|12164_12356_+	hypothetical protein	NA	NA	NA	NA
WP_011977779.1\|12543_12798_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.0e-12	48.8

DBSCAN-SWA_2

15937 : 26442

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152756.1\|15937_16501_+	methyltransferase	M4M9L8	Vibrio_phage	1.7e-18	42.0
WP_023280871.1\|17331_17874_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	4.6e-50	76.7
WP_001568055.1\|17922_18171_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_071854292.1\|18240_20298_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.4e-21	25.2
WP_001568057.1\|20342_20774_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_015065516.1\|20770_21499_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001568059.1\|21495_21822_+	hypothetical protein	NA	NA	NA	NA
WP_020806188.1\|22187_23168_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
WP_019706020.1\|23260_23473_+	hypothetical protein	NA	NA	NA	NA
WP_014343499.1\|23483_23708_+	hypothetical protein	NA	NA	NA	NA
WP_004152720.1\|23788_24109_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
WP_004152721.1\|24098_24377_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
WP_023287139.1\|24377_24791_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004152492.1\|25620_26442_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	1.2e-44	40.1

DBSCAN-SWA_3

55479 : 64993

Virus_Rctr197k(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015065542.1\|55479_60738_+	conjugative transfer relaxase/helicase TraI	A0A1P8DII4	Virus_Rctr197k	8.0e-06	33.8
WP_015065543.1\|60817_61543_+	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	1.2e-05	28.3
WP_015065544.1\|61698_62292_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_071854295.1\|62411_62633_+	hypothetical protein	NA	NA	NA	NA
WP_015065546.1\|62682_63327_+	hypothetical protein	NA	NA	NA	NA
WP_022631529.1\|63382_64033_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_015065549.1\|64029_64338_+	hypothetical protein	K7PKY8	Enterobacterial_phage	1.7e-17	40.4
WP_023157996.1\|64513_64993_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.2e-17	31.7

DBSCAN-SWA_4

71197 : 95113

Escherichia_phage(44.44%)

transposase,integrase

attL 81110:81169|attR 91676:92502

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|71197_71902_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001247892.1\|74590_74881_+	nucleotidyltransferase	NA	NA	NA	NA
WP_001293886.1\|74877_75279_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_000215515.1\|75268_75625_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000091613.1\|75879_76194_+	hypothetical protein	NA	NA	NA	NA
WP_000509966.1\|77896_78502_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
81110:81169	attL	NA	NA	NA	NA
WP_001067855.1\|81174_81879_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845048.1\|82114_83128_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001749986.1\|83300_83753_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_000777554.1\|83887_84361_+	trimethoprim-resistant dihydrofolate reductase DfrA1	G3MBI7	Bacillus_virus	3.7e-19	32.1
WP_000679427.1\|85064_85412_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|85405_86245_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|86372_86873_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|87379_88144_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_023356273.1\|88486_88726_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_022631505.1\|88725_89136_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_001067855.1\|90965_91670_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000427623.1\|92224_93229_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
91676:92502	attR	NA	NA	NA	NA
WP_022631502.1\|93643_93844_-	hypothetical protein	NA	NA	NA	NA
WP_004099053.1\|94144_95113_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8

DBSCAN-SWA_5

111409 : 116302

Escherichia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032441952.1\|111409_112432_+\|transposase	IS21-like element ISSen3 family transposase	A0A2L1IVA1	Escherichia_phage	8.7e-175	85.6
WP_001531258.1\|112428_113211_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.1e-136	96.5
WP_015632382.1\|113891_114332_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
WP_004189161.1\|114328_114679_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_014839879.1\|114709_116302_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-175	61.6

DBSCAN-SWA_6

125562 : 126342

Macacine_betaherpesvirus(100.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013214009.1\|125562_126342_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012567

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012561

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP012565

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP012564

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

5. NZ_CP012566

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection