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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020029 Lactobacillus helveticus strain D75, complete genome 5 crisprs cas14k,csa3,Cas14u_CAS-V,cas14j,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6 4 7 12 1

Results visualization

1. NZ_CP020029
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020029_1 457964-458146 TypeV NA
2 spacers
cas14k

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020029_2 1360958-1361169 Orphan I-B,III-A,III-B
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020029_3 1362306-1362394 Orphan I-B,III-A,III-B
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020029_4 1490702-1491326 Unclear NA
9 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020029_5 1492138-1493550 Unclear NA
21 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP020029_4 4.5|1490997|36|NZ_CP020029|CRISPRCasFinder,CRT 1490997-1491032 36 NZ_CP020029.1 985890-985925 0 1.0
NZ_CP020029_4 4.12|1490998|36|NZ_CP020029|PILER-CR 1490998-1491033 36 NZ_CP020029.1 985890-985925 0 1.0
NZ_CP020029_5 5.20|1493421|35|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1493421-1493455 35 NZ_CP020029.1 1661027-1661061 0 1.0
NZ_CP020029_5 5.21|1493486|35|NZ_CP020029|CRT,CRISPRCasFinder 1493486-1493520 35 NZ_CP020029.1 1661027-1661061 0 1.0

1. spacer 4.5|1490997|36|NZ_CP020029|CRISPRCasFinder,CRT matches to position: 985890-985925, mismatch: 0, identity: 1.0

aatgaaaaggtggcgcaagatatgagtttttacgat	CRISPR spacer
aatgaaaaggtggcgcaagatatgagtttttacgat	Protospacer
************************************

2. spacer 4.12|1490998|36|NZ_CP020029|PILER-CR matches to position: 985890-985925, mismatch: 0, identity: 1.0

aatgaaaaggtggcgcaagatatgagtttttacgat	CRISPR spacer
aatgaaaaggtggcgcaagatatgagtttttacgat	Protospacer
************************************

3. spacer 5.20|1493421|35|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to position: 1661027-1661061, mismatch: 0, identity: 1.0

cttttagtagtaaccacagaagttaaataattaga	CRISPR spacer
cttttagtagtaaccacagaagttaaataattaga	Protospacer
***********************************

4. spacer 5.21|1493486|35|NZ_CP020029|CRT,CRISPRCasFinder matches to position: 1661027-1661061, mismatch: 0, identity: 1.0

cttttagtagtaaccacagaagttaaataattaga	CRISPR spacer
cttttagtagtaaccacagaagttaaataattaga	Protospacer
***********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020029_5 5.7|1492562|37|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1492562-1492598 37 NC_019782 Lactobacillus phage AQ113, complete genome 9068-9104 0 1.0
NZ_CP020029_5 5.4|1492365|35|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1492365-1492399 35 NC_019782 Lactobacillus phage AQ113, complete genome 6158-6192 1 0.971
NZ_CP020029_5 5.12|1492893|36|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1492893-1492928 36 NC_019782 Lactobacillus phage AQ113, complete genome 10650-10685 1 0.972
NZ_CP020029_5 5.12|1492893|36|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1492893-1492928 36 NC_024206 Lactobacillus phage phi jlb1, complete genome 25770-25805 2 0.944
NZ_CP020029_5 5.12|1492893|36|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1492893-1492928 36 DQ320509 Lactobacillus phage KC5a, complete genome 25750-25785 2 0.944
NZ_CP020029_5 5.18|1493289|35|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1493289-1493323 35 NC_019782 Lactobacillus phage AQ113, complete genome 33793-33827 4 0.886
NZ_CP020029_3 3.1|1362334|33|NZ_CP020029|CRISPRCasFinder 1362334-1362366 33 MN694486 Marine virus AFVG_250M318, complete genome 22099-22131 7 0.788
NZ_CP020029_5 5.1|1492168|36|NZ_CP020029|CRT 1492168-1492203 36 NZ_AP019369 Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence 37934-37969 9 0.75
NZ_CP020029_5 5.11|1492826|37|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder 1492826-1492862 37 NC_022882 Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence 34904-34940 11 0.703

1. spacer 5.7|1492562|37|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 0, identity: 1.0

gcgatcactggactaagcacaaaaccacttcagttga	CRISPR spacer
gcgatcactggactaagcacaaaaccacttcagttga	Protospacer
*************************************

2. spacer 5.4|1492365|35|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 1, identity: 0.971

ggtgagagtgctgctaacatccaatcactaaatga	CRISPR spacer
agtgagagtgctgctaacatccaatcactaaatga	Protospacer
.**********************************

3. spacer 5.12|1492893|36|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 1, identity: 0.972

tactttcacccattgttttagcaacggcagaaatac	CRISPR spacer
tactttcacccattgttttagcaactgcagaaatac	Protospacer
************************* **********

4. spacer 5.12|1492893|36|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to NC_024206 (Lactobacillus phage phi jlb1, complete genome) position: , mismatch: 2, identity: 0.944

tactttcacccattgttttagcaacggcagaaatac	CRISPR spacer
tacttacacccattgtcttagcaacggcagaaatac	Protospacer
***** **********.*******************

5. spacer 5.12|1492893|36|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to DQ320509 (Lactobacillus phage KC5a, complete genome) position: , mismatch: 2, identity: 0.944

tactttcacccattgttttagcaacggcagaaatac	CRISPR spacer
tacttacacccattgtcttagcaacggcagaaatac	Protospacer
***** **********.*******************

6. spacer 5.18|1493289|35|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 4, identity: 0.886

cagaagttgttgttgaagacttttcatttttaggt	CRISPR spacer
ctgaagttgttgttgaaaacttttcatttttatct	Protospacer
* ***************.**************  *

7. spacer 3.1|1362334|33|NZ_CP020029|CRISPRCasFinder matches to MN694486 (Marine virus AFVG_250M318, complete genome) position: , mismatch: 7, identity: 0.788

tttactttagttttatctgtaactcctgtgtaa	CRISPR spacer
tttacttttgttttatctttaactgttttttta	Protospacer
******** ********* ***** .* * * *

8. spacer 5.1|1492168|36|NZ_CP020029|CRT matches to NZ_AP019369 (Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence) position: , mismatch: 9, identity: 0.75

tcaaatctaattattgatgatattgaaaatagaaga	CRISPR spacer
tttcctataaatattaatgatattgaaaatagaatt	Protospacer
*.   * *** ****.******************  

9. spacer 5.11|1492826|37|NZ_CP020029|CRT,PILER-CR,CRISPRCasFinder matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 11, identity: 0.703

ttatcggcttactggctggcgtagatttgattctgtg	CRISPR spacer
ctcccattttactagcttgcgtagatttgattctaat	Protospacer
.* .*. .*****.*** ****************.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 183924 : 242020 52 Bacillus_phage(20.0%) bacteriocin,transposase NA
DBSCAN-SWA_2 255039 : 308679 46 Bacillus_phage(20.0%) transposase,bacteriocin NA
DBSCAN-SWA_3 317460 : 470814 108 Bacillus_virus(14.71%) transposase,protease,tRNA NA
DBSCAN-SWA_4 490685 : 555606 53 Bacillus_phage(23.08%) bacteriocin,transposase NA
DBSCAN-SWA_5 771905 : 838776 53 Staphylococcus_virus(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_6 842212 : 910213 58 Lactobacillus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_7 949429 : 1014662 56 Staphylococcus_phage(13.33%) integrase,transposase,protease,tRNA attL 946616:946634|attR 973656:973674
DBSCAN-SWA_8 1044020 : 1113414 43 Bacillus_phage(20.0%) integrase,transposase attL 1086096:1086121|attR 1118889:1118914
DBSCAN-SWA_9 1207856 : 1275849 53 Lactobacillus_virus(10.0%) transposase,protease,tRNA NA
DBSCAN-SWA_10 1481475 : 1549190 54 Bacillus_phage(23.08%) transposase,bacteriocin,tRNA NA
DBSCAN-SWA_11 1615774 : 1676371 48 uncultured_virus(14.29%) holin,transposase,tRNA NA
DBSCAN-SWA_12 1762744 : 1799930 27 Lactobacillus_virus(25.0%) bacteriocin,transposase,protease,tRNA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP020029.1|WP_012211463.1|1633478_1633850_-|hypothetical-protein 1633478_1633850_- 123 aa aa NA NA NA 1615774-1676371 yes