CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017296	Pseudomonas fluorescens strain Pt14 chromosome, complete genome	10 crisprs	DinG,csa3,cas3,DEDDh,RT,PD-DExK	1	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017296_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_1

730220-730318

Unclear

Consensus_repeat	Method
AGCTGGCTTGCCTGCGATGACGGCCTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP017296_1

>merge|NZ_CP017296|1|730220-730318|CRISPRCasFinder
AGCTGGCTTGCCTGCGATGACGGCCTGCCAGCCGACACCTATCGATCTGATGCCCCGCGTTCAACCTGTGGGAGCTGGCTTGCCTGCGATGGCGGCCTG

>NZ_CP017296|1|1|730220-730318|CRISPRCasFinder
AGCTGGCTTGCCTGCGATGACGGCCTG	CCAGCCGACACCTATCGATCTGATGCCCCGCGTTCAACCTGTGGG
AGCTGGCTTGCCTGCGATGGCGGCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_003189650.1\|725206_726382_+\|acetyl-CoA-C-acyltransferase-FadA	unknown	unknown	gnl\|CDD\|181592
NZ_CP017296.1\|WP_014717508.1\|721559_722000_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP017296.1\|WP_014717515.1\|737005_737572_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371320
NZ_CP017296.1\|WP_155766212.1\|732085_732247_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_069868324.1\|734305_736996_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350770
NZ_CP017296.1\|WP_014717512.1\|732350_733058_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380065
NZ_CP017296.1\|WP_014717506.1\|717312_719241_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NZ_CP017296.1\|WP_003189652.1\|726831_729453_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_CP017296.1\|WP_060767241.1\|719454_721377_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236861
NZ_CP017296.1\|WP_019818247.1\|722105_722543_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_069868322.1\|733193_734204_+\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NZ_CP017296.1\|WP_032873405.1\|741372_742836_+\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236219
NZ_CP017296.1\|WP_069868320.1\|730994_731468_-\|CDP-glycerol--UDP-pyrophosphoryl-N--acetylglucosaminyl-N-acetylmannosamine-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|227691
NZ_CP017296.1\|WP_003189651.1\|726480_726717_+\|DUF1653-domain-containing-protein	unknown	unknown	gnl\|CDD\|377930
NZ_CP017296.1\|WP_019818250.1\|715450_717247_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|131259
NZ_CP017296.1\|WP_003172575.1\|731478_732087_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP017296.1\|WP_005786151.1\|723029_725177_+\|fatty-acid-oxidation-complex-subunit-alpha-FadB	unknown	unknown	gnl\|CDD\|183293
NZ_CP017296.1\|WP_003189653.1\|729672_730194_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_003189666.1\|737582_741032_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP017296.1\|WP_014717511.1\|730724_730958_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_003189650.1\|725206_726382_+\|acetyl-CoA-C-acyltransferase-FadA	gnl\|CDD\|181592	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.	0
NZ_CP017296.1\|WP_014717508.1\|721559_722000_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	8.09085e-35
NZ_CP017296.1\|WP_014717515.1\|737005_737572_-\|hypothetical-protein	gnl\|CDD\|371320	pfam10972, CsiV, Peptidoglycan-binding protein, CsiV. CsiV, a small periplasmic protein (cell-shape integrity in Vibrio), is essential for growth of Vibrio cholerae in the presence of DAA, non-canonical amino-acids, the typical components of peptidoglycan side-chains in Vibrio cholerae. CsiV interacts with LpoA, the lipoprotein activator of penicillin-binding-protein1A that is necessary for mediating the assembly of peptidoglycan. CsiV acts through LpoA to promote peptidoglycan biogenesis in V. cholerae and other vibrio species as well as in the other genera where this protein is found.	5.91242e-36
NZ_CP017296.1\|WP_069868324.1\|734305_736996_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350770	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins. Proteins belonging to SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprises a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. Archaeal SWI2 and SNF2 are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.53681e-109
NZ_CP017296.1\|WP_014717512.1\|732350_733058_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380065	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in the Pseudomonas aeruginosa PsrA which regulates the fadBA5 beta-oxidation operon. Functional analysis of PsrA indicated its importance in regulating b-oxidative enzymes. It has also been suggested that PsrA, a member of the TetR family of repressors, could affect global gene expression including activation of rpoS.	1.13288e-24
NZ_CP017296.1\|WP_014717506.1\|717312_719241_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	1.81968e-109
NZ_CP017296.1\|WP_003189652.1\|726831_729453_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP017296.1\|WP_060767241.1\|719454_721377_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NZ_CP017296.1\|WP_069868322.1\|733193_734204_+\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NZ_CP017296.1\|WP_032873405.1\|741372_742836_+\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP017296.1\|WP_069868320.1\|730994_731468_-\|CDP-glycerol--UDP-pyrophosphoryl-N--acetylglucosaminyl-N-acetylmannosamine-glycerophosphotransferase	gnl\|CDD\|227691	COG5404, SulA, SOS-response cell division inhibitor, blocks FtsZ ring formation [Cell division and chromosome partitioning].	3.47531e-32
NZ_CP017296.1\|WP_003189651.1\|726480_726717_+\|DUF1653-domain-containing-protein	gnl\|CDD\|377930	pfam07866, DUF1653, Protein of unknown function (DUF1653). This is a family of hypothetical bacterial proteins of unknown function.	6.03977e-35
NZ_CP017296.1\|WP_019818250.1\|715450_717247_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP017296.1\|WP_005786151.1\|723029_725177_+\|fatty-acid-oxidation-complex-subunit-alpha-FadB	gnl\|CDD\|183293	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB.	0
NZ_CP017296.1\|WP_003189666.1\|737582_741032_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP017296.1\|WP_003172575.1\|731478_732087_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.07254e-112

>NZ_CP017296.1|WP_003189653.1|729672_730194_+|hypothetical-protein
MANELYTRTNQKIYFAGLSLEALGRAEEGKEMNAIALVQAGREAALFHLYGALLGLCHEIAGFYRLPQAGAPRAEMIMNREVLDSMAIPELAELVEMAQSPDSWVARLLKAHADMFQPPRIPHVPKGDVTQPLIVAVALEQDEPKPLSREELEGWRQELKKMALRFREGLNEC
>NZ_CP017296.1|WP_003189652.1|726831_729453_+|type-I-DNA-topoisomerase
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGEGPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGANVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMARTYIESEFGKTYLPEKPNVYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPENGMRANQPVMTDIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVLRGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGASGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTKEQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
>NZ_CP017296.1|WP_003189651.1|726480_726717_+|DUF1653-domain-containing-protein
MKVEPGLYQHYKGPQYRVFSVARHSETEEEVVFYQALYGEYGFWVRPLSMFLETVEVDGEQVPRFALVTAEPSLFTGQ
>NZ_CP017296.1|WP_003189650.1|725206_726382_+|acetyl-CoA-C-acyltransferase-FadA
MSLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNTKVDPNEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTAAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREAQDAFGLRSHQLAHKATVEGKFKDEIIPMNGYDENGFLKLFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGGNLGVATMCIGLGQGISTVFERV
>NZ_CP017296.1|WP_005786151.1|723029_725177_+|fatty-acid-oxidation-complex-subunit-alpha-FadB
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASVKGVIVSSGKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMSATAKIGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENKAEDALKVGAVDAVVAPDKLAEAALNLIKGAISGEFDYKAKRQPKLEKLKLNAIEQMMSFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQELKKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVKDDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKVADPSVHEVLAPVIYEQREVSDEDIINWMMIALCLETVRCLEDGIVETAAEADMGLVYGIGFPPFRGGALRYIDSIGVAEFVALADKYADLGPLYHPTAKLREMAKNGQSFFG
>NZ_CP017296.1|WP_019818247.1|722105_722543_+|hypothetical-protein
MTVWIVVSILAVVLSPLVWLRPSRQQSGRMALRMEARRIGLAMQLAPQEWPHWLKQEPPSPCAQYCRPRRGSAPATWSYWQLEPGLWVNQWREPCVDEKLLPHFATLPANVYKVEADKQMIALYWGEKGDASVLKDIDTLLKALA
>NZ_CP017296.1|WP_014717508.1|721559_722000_-|universal-stress-protein
MPYEHILVAVDLTEECDPVIKRAQESAIANGAKLSLVHIVEPMAMAFGGDVPMDLSQLQQQQFDQAKERLDRLILKYPHLKKEDCHLTYGQPRQEIHHLAKEKACDLIVVGSHGRHGLALLLGSTANDVLHGAPCDVLAVKLIKSP
>NZ_CP017296.1|WP_060767241.1|719454_721377_+|ATP-binding-cassette-domain-containing-protein
MTLLKFSDVSLAFGAMPLLDKVSWQIARGERVCIIGRNGTGKSSMMKLVKGDQKPDDGSVWRAPGLKIGELPQELPVADGRTVFDVVAEGLDGVGELLAQYHHLAQNCVTEEDLDKLMHVQQDLEARDGWRLQQLVDSTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPTNHLDIGAIAWLEEAIKDFQGAVLFITHDRAFLQSLATRILELDRGGLIDWNGDYASFLVHKEAALAAEETANALFDKKLAQEEVWIRQGIKARRTRNEGRVRALKALRVERSERRERTGKANIQLDTADKSGKQVMVLENVSFHHPDGPFLIKDFSMVLQRGDRIGLLGANGTGKTTLLKLMLSGLQPTSGKVEEGTRIDVAYFDQLRHQLDLEKTVIDNVAEGRDFIDIDGQSRHVLSYLGDFLFSPQRARTPVKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVLLTFNGTVLMVSHDREFLDNVVTSTLVFEGEGKVREYVGGYQDWLRQGGSPRLLGVTESKSGKADLNTAVVAPVAAQAPAAAADAAPAKKKLSYKLQRELEALPGDIDAKEQQIAAVEAEMADAGFYLRPAAETAKVIASLETLNQELEALVERWAELDA
>NZ_CP017296.1|WP_014717506.1|717312_719241_-|transglycosylase-SLT-domain-containing-protein
MRSRLFNFLSCLLLSATAVQSAQAVDLTTQRQYYDQAKRALAKGDSGPYMQYSQALADYPLTPYLAYDELTARLKTASNEEIEQFLAKHGDLPQANWMKLRWLRWLAERGDWQTFEKYYDTKLNFVELDCLHGQYQLSHNLKAEGYKTAEKLWMTGKSQPAACDATFGQWAAAGQLTEQKIWERTKLAAEARNYALANSLVKTLPTLGAQGRLMVDVAQKPDMLSDPSRFQPATEAMSDAVGLGLRRLARQDPDKAMSLLDGYASSMHFSRDEKVSIAREIGLTLAKRFDPRALEVMTKYDPELRDNTVSEWRLRLLLRLARWEDAYQLTRKLPQDLATTNRWRYWQARSLELAEPKNPQALVLYKNVAKERDFYGFLAADRSKAPYQLNNKPLVMSQALVNKVRNTPGVRRALEFYARGQIVDGRREWYHVSRHFNRDEMVAQAKLAYDMKWYFPAIRTISQAQYWDDLDIRFPMAHRDTLVREAKVRGLHSSWIFAITRQESAFMDDARSGVGASGLMQLMPGTAKETARKFSIPLASPAQVLDPDKNIQLGAAYLSQVHSQFNGNRVLASAAYNAGPGRVRQWLRGADHLSFDVWVESIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERYFDDQ
>NZ_CP017296.1|WP_019818250.1|715450_717247_+|ABC-transporter-ATP-binding-protein/permease
MFSIRQRRAIRLASRFIAPYRWQALGALLALIVTAGITLSMGQGIRLLVDQGFMTQSPHLLNQSIGLFMLLVLGLAVGTFTRFYLVSWIGERVVADIRRQVFNHLIYLHPGFYENNRSSEIQSRLTTDTTLLQSVIGSSLSLFLRNALMVIGGIVLLFITNPKLTSIVVVALPLVLAPILIFGRRVRSLSRLSQDRIADVGSYVAETLGQIKTVQAYNHQVQDEQRFAVTVEDAFVTARKRILQRSWLITLVIMLVLGAVGVMLWVGGMDVISGRISGGELAAFVFYSLIVGSAVGTLSEVLGELQRAAGAAERIGELLQSGNEIQAPATGGVRLPERVSGRMELQDLRFSYPSRPDSYAIDGLNLTINPGETLALVGPSGAGKSTIFDLLLRFYDPQQGRILLEGQPLTELDPLDLRRHFALVSQSPALFFGSVEDNIRYGNPSATTAQVEAAARIAHAHDFILQMPDGYQTHLGESGQGLSGGQRQRLAIARALLVDAPILLLDEATSALDAQSEHLIQQALPQLMQGRTTLVIAHRLATVKNADRIAVMDQGKLVAVGTHQQLIASNPLYARLAALQFSADPVGGGLPPIAADQQ
>NZ_CP017296.1|WP_014717511.1|730724_730958_+|hypothetical-protein
MPTSFLEIVELPDGRIELRRAEDEGSLVILDFSEDAKVFLQGQHVEVAKAMLSVGVQMAGRLAEGEPEKDEGPRVLH
>NZ_CP017296.1|WP_069868320.1|730994_731468_-|CDP-glycerol--UDP-pyrophosphoryl-N--acetylglucosaminyl-N-acetylmannosamine-glycerophosphotransferase
MQLMHTPQHTQLSLFEAFMAQPLAPILKETVEAPWGGEPEAFSELSLRGAAESCLNLLAPILRELSEDQDARWLTLIAPPASLTQAWLRDAGLNRERILLLQPRGAQSAQQLTCEALRLGRSHTVVSWLNPLNASAKQQLISAARTGDAQSLNIRLG
>NZ_CP017296.1|WP_003172575.1|731478_732087_-|transcriptional-repressor-LexA
MLKLTPRQAEILAFIKRCLDDNGYPPTRAEIALELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKADESTLPIIGRVAAGAPILAQQHVEESCNINPTFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTTREARNGQIVVARIGDEVTVKRFKREGSKVWLLAENPEFAPIEVNLKDQDLVIEGLSVGVIRR
>NZ_CP017296.1|WP_155766212.1|732085_732247_+|hypothetical-protein
MLIALSFYTVTGIIYSELRLAIILFSGPAGRSSVSRPTEQKRRCLHSCKDVIK
>NZ_CP017296.1|WP_014717512.1|732350_733058_+|TetR/AcrR-family-transcriptional-regulator
MAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCTSLDRELERRQAKADHKPSLEELLEILVEQALVVQPRSGNDLSIFMRLLGLAFSQSQGHLRRYLEDMYGKVFRRYMLLVNEAAPRIPPIELFWRVHFMLGAAAFSMSGIKALRAIAETDFGVNTSIEQVMRLMVPFLAAGMRAETGVSDPAMAAAQLRPRSKTVPVAAKV
>NZ_CP017296.1|WP_069868322.1|733193_734204_+|beta-N-acetylhexosaminidase
MTAALQGSLMVDVAGTRLTAEDRHLLRQPEVGGLIIFARNIEHPRQVRELSAAIRAVRPDLLLAVDQEGGRVQRLRQGFVRLPAMRALADNPNAEYLAEQCGWIMATEVLAVGLDLSFAPVLDLDYQRSAVVGTRAFEGDPERAAVLAGAFIRGMNSAGMAATGKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAHVIYPQVDAQPAGFSRRWLQDILRGELQFDGVIFSDDLSMAGAHVVGDAASRIEAALTAGCDMGLVCNDRAAAELALSAAQRMKVTPSARIARMRGQAVASTDYKQDPRWLTALTALRDAQLID
>NZ_CP017296.1|WP_069868324.1|734305_736996_-|DEAD/DEAH-box-helicase
MPLTSSLTKPLAPSWANRFKEQSLERGRRYALENRVRIVECGDSTITASCEGSGGNVYRQTISLRESAKGLLILVDSRCTCPVHTNCKHIAAVLLKVQETLAYPAAAQDAQLLEKLQAVLENRVVLPQVVMDDVQPVPRLWLASVEFSAFEPRNGKMQRYIQHRAALSFNYLGNYVSGQKNADIIVRQETQSLRIKRHPEQEQAYREHLRLLGFKIATRQSKALPESAGELFEMVNDSAWLNFTLNVSPTLRAEGWELQIDEDFGFDLSPVDDWYATVDEGPERDWFDLELGIIVNGERLSLLPILLNLMRSHTEILNPEKLARRRDEELILVNIPGLPNGHGPLQVALPYGRLKPVLATLGEFYLQEAGTTALRLAKADAIRLNPLEDLPLQWEGGEKIRTFAQRLRDIKDFTCVAPEGLNATLRPYQLEGLSWMQSLRQLEVGGILADDMGLGKTLQTLAHILTEKNAGRLDRPCMVVMPTSLIPNWLDEAAHFTPQLRVQALYGAGRKKHFANLNDYDLLLTTYALLPKDIEQLAALPLHVLILDEAQYIKNPSSKAAQAARELNARQRLCLSGTPLENHLGELWSLFHFLLPGWLGDVKSFNRDYRVPIEKRASEVRLQHLNGRIKPFLLRRTKEQVATELPPKTEIIHWVDLNEAQRDVYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDATLPARGSSSGKLDSLMDMLDELFAEGRRILLFSQFTSMLSLIEAELKKRGIAYALLTGQTRDRRTPVKDFQSGKLQIFLISLKAGGVGLNLTEADTVIHYDPWWNPATENQATDRAYRIGQEKPVFVYKMIARGTVEEKIQHLQKEKSDLAAGVLDGRTTGDWQLGNEEIEALFAPLPNKQEKR
>NZ_CP017296.1|WP_014717515.1|737005_737572_-|hypothetical-protein
MRVFRILSLLLVVLAPSAFADSLYQVEMILVRQNAEPVINSRAAPENWDAGAPRLGERMSPPRLGNIVDKLRADANYTVLAHKAWEQNLGEQAVKVAITDGQEQFGQFPIEGVLSLQLGRFTDIDADFWINQFDGNGSVIASEHLSQKDVRTKNNQLNYLDGGHLALLIKITSLTAKPPSAPPPDLQD
>NZ_CP017296.1|WP_003189666.1|737582_741032_-|transcription-repair-coupling-factor
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPASALPDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVASKERLAITIAPLDEGLRLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEALFERLIPKSV
>NZ_CP017296.1|WP_032873405.1|741372_742836_+|glyceraldehyde-3-phosphate-dehydrogenase
MWKVPVTQKPDQCLGEWIDREALAEAMIPLIGQLYRNNNVVSSIYGRSLINQSVIAILKAHRFARHRSADDSELSVHETFPLLKAMSELKLGAASVDLGKLAYKFRKEGAGRTAEQFVREEMADVVGQQNAAARKGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLTKRASLLRRDSVHGSFNGTITIDEENNTITANGNLIQVIYAKNPTEVDYTQYGIQNALLVDNTGVWRDAEGLGQHLACPGVDRVVLTAPGKGKLKNIVHGINHAEITADDKIVSAASCTTNAIVPVLKAVNDKFGIVNGHVETVHSYTNDQNLIDNFHKGDRRGRSAALNMVITETGAATAAAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKAATREEMNEYLRYMALHSDLHKQIDFVNSQEVVSTDFVGSRHAGVVDAEATITQDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR

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Crispr_ID: NZ_CP017296_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_2

1153261-1153364

Orphan

Consensus_repeat	Method
CGATCCAACTGTGGGAGCTGGCTCGCCTGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_2

>merge|NZ_CP017296|2|1153261-1153364|CRISPRCasFinder
CGATCCAACTGTGGGAGCTGGCTCGCCTGCGATGGCGGCCTGCCAGGCGACGGCTATCTACCTGACACCCCACGATCCAACTGTGGGAGCTGGCTTGCCTGCGA

>NZ_CP017296|2|2|1153261-1153364|CRISPRCasFinder
CGATCCAACTGTGGGAGCTGGCTCGCCTGCGA	TGGCGGCCTGCCAGGCGACGGCTATCTACCTGACACCCCA
CGATCCAACTGTGGGAGCTGGCTTGCCTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_003190283.1\|1151166_1151349_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_014717956.1\|1162632_1163535_-\|transcriptional-activator-NhaR	unknown	unknown	gnl\|CDD\|176120
NZ_CP017296.1\|WP_014717954.1\|1160011_1161232_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP017296.1\|WP_069868365.1\|1146917_1148588_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP017296.1\|WP_038449689.1\|1161473_1162628_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP017296.1\|WP_020302053.1\|1164795_1165830_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NZ_CP017296.1\|WP_081339099.1\|1153557_1154859_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP017296.1\|WP_014717958.1\|1163952_1164702_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP017296.1\|WP_038449681.1\|1141599_1142913_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340430
NZ_CP017296.1\|WP_014717949.1\|1151440_1151635_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038449688.1\|1156784_1159940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038449686.1\|1148610_1149924_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NZ_CP017296.1\|WP_014717950.1\|1152399_1153218_+\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|183587
NZ_CP017296.1\|WP_019817519.1\|1155989_1156499_+\|DUF1993-domain-containing-protein	unknown	unknown	gnl\|CDD\|370447
NZ_CP017296.1\|WP_019818659.1\|1151868_1152243_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371451
NZ_CP017296.1\|WP_014717957.1\|1163669_1163921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_032903698.1\|1155221_1155872_-\|DUF480-domain-containing-protein	unknown	unknown	gnl\|CDD\|377312
NZ_CP017296.1\|WP_038449682.1\|1145415_1146738_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|224967
NZ_CP017296.1\|WP_019818667.1\|1143041_1145189_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP017296.1\|WP_019818663.1\|1150095_1151163_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_019818659.1\|1151868_1152243_-\|hypothetical-protein	gnl\|CDD\|371451	pfam11285, DUF3086, Protein of unknown function (DUF3086). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	0.00387162
NZ_CP017296.1\|WP_014717956.1\|1162632_1163535_-\|transcriptional-activator-NhaR	gnl\|CDD\|176120	cd08429, PBP2_NhaR, The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine (PGA) .Thus, it is suggested that NhaR has an extended role in promoting bacterial survival. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.39283e-121
NZ_CP017296.1\|WP_014717954.1\|1160011_1161232_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP017296.1\|WP_069868365.1\|1146917_1148588_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.9931e-72
NZ_CP017296.1\|WP_038449689.1\|1161473_1162628_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.54342e-78
NZ_CP017296.1\|WP_020302053.1\|1164795_1165830_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NZ_CP017296.1\|WP_081339099.1\|1153557_1154859_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.90402e-07
NZ_CP017296.1\|WP_014717958.1\|1163952_1164702_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	4.27189e-75
NZ_CP017296.1\|WP_038449681.1\|1141599_1142913_+\|sensor-histidine-kinase	gnl\|CDD\|340430	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.	5.40035e-49
NZ_CP017296.1\|WP_038449686.1\|1148610_1149924_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NZ_CP017296.1\|WP_014717950.1\|1152399_1153218_+\|shikimate-5-dehydrogenase	gnl\|CDD\|183587	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.	0
NZ_CP017296.1\|WP_019817519.1\|1155989_1156499_+\|DUF1993-domain-containing-protein	gnl\|CDD\|370447	pfam09351, DUF1993, Domain of unknown function (DUF1993). This family of proteins are functionally uncharacterized.	9.94994e-90
NZ_CP017296.1\|WP_019818667.1\|1143041_1145189_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.79648e-80
NZ_CP017296.1\|WP_019818663.1\|1150095_1151163_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.37159e-43
NZ_CP017296.1\|WP_038449682.1\|1145415_1146738_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|224967	COG2056, COG2056, Predicted permease [General function prediction only].	0
NZ_CP017296.1\|WP_032903698.1\|1155221_1155872_-\|DUF480-domain-containing-protein	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	3.62476e-73

>NZ_CP017296.1|WP_014717950.1|1152399_1153218_+|shikimate-5-dehydrogenase
MQMHPNKDTQLCMSLSARPGNFGLRFHNHLYEQLGLNFYYKAFSSQDLPGAIGGIRALGVRGCGVSMPFKEAAIALVDELDDSVQAIDSLNTIVNTNGHLKAYNTDYIAIEQLLKKHAVPKDSSFALRGSGGMAKAVASALRDGGYANGVIVARNEVAGQALARNLGYAWQADLGSLRPQMLINVTPIGMTGGAEADALAFDAEAIDQAETVFDVVAIPAETPLIVRGRAQGKRVITGLEVIAIQALEQFVLYTGVRPTQEQFEAAVAFARS
>NZ_CP017296.1|WP_019818659.1|1151868_1152243_-|hypothetical-protein
MTIMRKLPRIALLIGALAMAGQASAHGGGWGGPAVFGALVGAAVVGSVVASQPREVYVQQPVYVQPQPVYAAPPPVYYAPPPPVYVQQQVYYRPAPVYYGPPRGYYGPPRGYYGPPHGYYRHGW
>NZ_CP017296.1|WP_014717949.1|1151440_1151635_-|hypothetical-protein
MPTQNPHRTAGLCTSSKVYNALTELKHLEGHRSAKFLALLAENLVRKGLLSEHEVVNMLDQVVD
>NZ_CP017296.1|WP_003190283.1|1151166_1151349_-|hypothetical-protein
MPTVQIMSVIGSAVPAPLRKLGLLACWYVVRDGEPISGPLTSLSDAETQRRMATDFRLEA
>NZ_CP017296.1|WP_019818663.1|1150095_1151163_+|AI-2E-family-transporter
MNQTNLQFKTLLLLLALVTVAFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFSWNRNLTSLTTLMVCLVIAILPVIITSALLVQEGATLYKNIESGKLDVAGYIEQFKNVLPPYFQQLLDRFGMGNLEGLREKVVKGAMQGSQFFASQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVRTAVPLAEPQKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMAFLSLLPAVGAGLVWGPVAVYFLLSGSIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGLSVFGLNGFVIGPLVAALFMSCWALFVETKPRVKLPLP
>NZ_CP017296.1|WP_038449686.1|1148610_1149924_-|tRNA-5-hydroxyuridine-modification-protein-YegQ
MPSMIAPELLAPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFDHANLALGIHEAHDQGKRFYVVVNIAPHNAKLKTFLKDLAPVIAMGPDALIMSDPGLIMLVRQHFPQMPIHLSVQANTVNWASVAFWQQQGICRVILSRELSLEEIGEIRQQVPAMELEVFVHGALCMAYSGRCLLSGYMNKRDANQGTCTNACRWKYQATPAVENATGDIVHEYQPTLGIGTPTDQVFLLQEANRPDDSMPAFEDEHGTYIMNAKDLRAVQHVERLAQMGVHSLKIEGRTKSHFYCARTTQVYRQAIDDAVAGRAFDRGLMTNLESLAQRGYTEGFLRRHVHDEYQNYQNGSSVSERQQFVGELTGERRGALAEVKVKNRFALGDHLELMTPAGNFHFDLPSLHNAKGESIEVAPGDGHTVYVPIPAQMDLRFGLLMRDV
>NZ_CP017296.1|WP_069868365.1|1146917_1148588_+|methyl-accepting-chemotaxis-protein
MRLSLKAKVLALAVVPVLLFAVVISLTTVWILQGQARNEVDETRQRLLNDAKATLQGYVEVAMTTIKPLYDAAAPGDSAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGKSFKDNRDPNGVYVNRDLVKVGKDGSHYLQYSSTQPGQTELVPKLGYTEYLPKWDMVIGTSVNLDGIDAQVAVVQAKVEKRMQGVLLSILGVAVVVLLVIAAVGMLLANTILRPLHLMKANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITDMTAQLTGLVSQVSDQAQRSEQAMERQRHETDQVATAINQMSSAAHEVARSAQGAAVAAQQTDAEGQAAKRVVDGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLGVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQKGTEAAVDAMRRSSDAGDGTSAQANQAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTSRSLGQRLGQLVGQFRI
>NZ_CP017296.1|WP_038449682.1|1145415_1146738_+|TRAP-transporter-large-permease-subunit
MINAVIAAVGTMLVLSLSRVHVVIAIIVGALVGGLTGGLGIEATLKAFNGGLGGGATVALSYALLGAFAVAIAKSGLAHALADKALLLVDRQDASGGNHVKWLLIGLLWVVAIASQNILPIHIAFIPLLVPPLLYVLTKLQLDRRLIACVMTFGLITPYMFLPVGFGNIFLNQILLANVAKSGVDISGVNVTHAMGLPALGMVVGLLVAVLISYRKKRVYDLKKIERVEQVAVQYNPLTLLVAGLAIASAFIIQLWLDSMIIGALAGFLIFSVSGIVRWRDTDDLFTEGMKMMAMIGFIMIASSGFAEVLKATGDVNSLVQASAALIGHSRGVGALLMLLVGLLVTMGIGSSFSTVPILAAIFVPLCVQLGFSPLAIVCIVGTAGALGDAGSPASDSTLGPTSGLNIDGQHHHIWDTVVPTFLHYNLPLLAFGWLAAMTL
>NZ_CP017296.1|WP_019818667.1|1143041_1145189_-|methyl-accepting-chemotaxis-protein
MSLRQLSIQWKITLLAGLCLLGIVTLLVGLSLYRMAQSSQQVKASSMQMLDEAAQSRIEAQGEVQALGIRQQFMDAYQYGHGFSRQVLFLREQAEKRFLDAFDTREDLTRQVKAALQANPDLLGLSLVFEANALDGKDELFANQAELGSNDKGRFALYWSQPTPGKITSMALPESDMADTSIGPSGEKANAWFTCPRTTLKPCVIEPYFYVIDGQNVLMTSIVFPLMVNGKVIASLSVDINLNSLQAVSQQASQKLYDGQTQVSILSPTGLLAGYSPDASKLSQRLEQVDPASGAQLTSALASSTQTHSLRTDHQLKVLAPFAPIPGGKAWGVLLDVPEKVLVAPAEALKNQLDADNAKGTLLELGLGLLAAVVGLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYAKQDELGQLAGWFNRFLDKLQPIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASHEMSATAQDVARSAAQAAQAARDADQATRQGLTVIDRTTANIGELAADMSTAMTQVEGLAANSEQIGSVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLARRTQESVEETRLVIEQLQTGTSDVVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASAAEEQSAVAEEINSNVATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV
>NZ_CP017296.1|WP_038449681.1|1141599_1142913_+|sensor-histidine-kinase
MRSIQRRLSLGLISVMVIVGVVLAQTSLWLFEAGLQRYLEAGLRNDSENLLVALVRGPNGVQLDEQRLSPAYQRPFSGHYFRIDFADVHWRSRSLWDQELPRLPVAGLKGNLQLGPEGQQLLVLRSDYKRFGQPISISVAQDYTPVRESFRLMRRVGLVMGLAALLLVLILQRVTVRRALRPLETARNQIAQLQQGQRSQLDTQVPLELEPLVAQINHLLAHTEDSLKRSRNALGNLGHALKTPLAVLLSAASSDALKDHPQLSQLLREQLEQVQQRLNRELNRARLAGDALPGALFDCEQELPGLLATLRMIHGEHLDLSYQVAPGLQLPWDREDLLELLGNLLDNACKWADAEVRLSVSETPQGYRLAVEDDGPGIPEAQRDQVFSRGARLDEQRVGHGLGLGIVRDIVEVWGGVLQLQESELGGLKVLIQLPRR
>NZ_CP017296.1|WP_081339099.1|1153557_1154859_+|IS4-family-transposase
MAKLALQQAIAPEWIDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPSLHAAARQLEDLPVSLAALYDKISRTEPALLRALITGCAQRLAPTIRELGCTAMLPGWQVRVVDGNHLASTEKRLGALRNERGAARPGFSVVAYDPDLDQVVDLQACEDAYASERVCVLPLLANAEPGQVWLADRLYCTLPVMEACEQVQTCFVIRQQAKHPRLIQEGEWQEPVPVETGTVREQIIQVKGGYQCRRVELTLHSPTDSGDSSLMFWSNLPESVSAQQIAELYRRRWSIEGMFQRLEAILESEIETLGSPKAALLGFATAVLAYNVLAVLKRSVEQAHRDTQPEGWEASIYHLAVQVRSGYEGMQIALPSEHLPVIPLEKLAQHLLALARNIQPKQVAKSPRGPKVPKPKTWVKGTAVNAHVSTDRIIKAAKTKRP
>NZ_CP017296.1|WP_032903698.1|1155221_1155872_-|DUF480-domain-containing-protein
MTAEHDTDTPEPRLNSTEIRILGCLIEKQATNPETYPLTLNALVLACNQKTSREPVMNLSQGQVGQSLRALEGQGFTRLVMGSRADRWEHRVDKALELVPAQVILTGLLFLRGPQTVNELLTRSGRMHDFEDAEQVVHQLERLIARGLALLVPRQAGQREDRYTHALGDPADIEAIMTARGNPVERSAGAVSVERIEELEARIAALEERLTQLEQV
>NZ_CP017296.1|WP_019817519.1|1155989_1156499_+|DUF1993-domain-containing-protein
MTISLYAASIPVFKQMLNALSDVLKKAEAHASAKNIEPNALLQARLFPDMFPLVRQVQIAVDFAKGVSARLAEIEVPKYEDNEVTFADLQALIAKVLAFVDTIKPEQIDGKEGIEIITRPGTPKEKRFSGQSYLLTYGLPQFFFHITTAYALLRHNGVEVGKRDYMGAF
>NZ_CP017296.1|WP_038449688.1|1156784_1159940_+|hypothetical-protein
MSRTRREAPGNEAVLSTSDRAQADSELAARYAEALESRARDEHTIIPNIPDASSLGQWRIQLRNTFEDPYLAYVLKRQGLDPTTMEIAPDGTLSVKEKNGAIARFTLKDHPRWALYAGPILAALKAYAPDGISYSAVRADSVPLKLIAQFYGETIHNDSTEDRARAQALQKNNAFATSGVGQARSEETLMLQKQQLADRRDLQAFQDALVEANAKVGKYLDQQERLHQSNLSFRPGFQPPYDREAGFLSYLQSQLFTIGPESGFHLDNQPMAGRQVNLLQFMTANGWKHPVNTEEMRQIGLSLAELQYPQRRQDLGGGLAWPTPLDTTQQQAIYDAVSYNAMGLPEFDQLKLSQNAFGYLTQTIQWSEAELKDPRQAILRLLQSPAAQSLGEALRDKFEGVGSVEDWVLSALQIGLNQDALWKPGEKNKVAGFDLSARENWGKPLSFVLKGLTDHLSKSYGGNAPVAAYLPLSHHAPELLVKDVPDHVTYGSPGWVSLKSIVAKAEMRSPGVAATKTYEQLLKDDLRPIDDAGIQVEALAAREGLIHWAVADGAIEKREDNNYTDEEIERAGVLANERFELLTTASEAQRTILHSRSELGLSILRACFPEETYGKIDFEKKTIYPTEKHRDLKGPYSILDIYSAPQQHVRWFSNDPAVPIEKIAADVHEMGSLNEAFESHVLEYFDGFKDAMSVNVKHQMSLLPQEDQEALQHGALKIYGEEKVTQTITSAGYKIQYDVSETEEVKSSSVFLETLHKGKKRIYEFNPATGGLQHRADLAEGLKTGLQGEWTPVATNKPKVRAQSNTKISEINANDSAERKERESKLQTSSPTQAFSSQRTQHIADAVTRHFFRADERETVVNAARGVTTFDTEVTEFEKIQAVTRALIPGASALHSFQQGRVGEGLKFLAFDVFGFVVAGAGAVGKISKIAKVGGQLGRGGVTGRLGRAFISAANPFAGGAAIGTRGLTAFSSVVGKLSLGWKSVAANISVNRVFQHKPKNVMVGTSAGEDATKIIAQLDSVSGKWYRFNPQTNERYGMPLQGFTAATSPS
>NZ_CP017296.1|WP_014717954.1|1160011_1161232_-|serine/threonine-transporter-SstT
MTAAPSLLQRLMRVSLVTQIVIGLIAGIVLALLFPEAARATGFIGKVFVTALKAVAPILVFVLVMASIANHKHGQETHIRPILFLYLLGTFSAAVVAVVASMLFPSALVLVTHDATVSAPGGIGEVLQSLLLSVVDNPVSALMNANFIGILAWAIGMGIAIRHAGETTRTVLDDLSNGVTLIVRVVIRFAPLGIFGLVASTLATSGFGALLGYAHLLVVLIGCMLFVALVINPAIVFWKLRRNPYPLVLMCLRESGITAFFTRSSAANIPVNLALSKRLGLHEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGITVDLPTAVLLSVVAAICACGASGVAGGSLLLIPLACSLFGIPSEIAMQVVAVGFIIGVLQDSAETALNSSTDVLFTAAACLGKEDQTA
>NZ_CP017296.1|WP_038449689.1|1161473_1162628_+|MFS-transporter
MLFPILLLSAAGFTVLTTEFVIVGLLPSIARDLNVSVSQAGLLVTLFAFTVAAFGPFLTAYCARFPRKRLFISILIMFAAANTVAALAPNIWVMALARLIPALGLPVFWALASETAVDIVGPEFAGRAIEKIGFGIVCATVFGIPVGTLISDMFGWRTAFAVLAVIALAKALLLYVYLPVTPAKHQQASLRSQFKILRSPVMQGHILLSILVFSGMFTAYTYLADILERLAGFDGTLVGWCLMGFGAVGLIGNSLGGRAVDRHPLIASMVFCGFMIAGMVAVVPAIHSTIGLAAAMAVWGVTQAAMFLVSHVRLMKAAPHAPAFAASLNIAGANLGIGLGAMVGGHVIDTLGLGSLGFAASGFILVSILLALWLMTAKPTAFNA
>NZ_CP017296.1|WP_014717956.1|1162632_1163535_-|transcriptional-activator-NhaR
MLNYRQLHYFWVVAKTGSIVRACEQLNLTPQTISGQISLLEQTFGIALFQRVGRQLELTEAGRQALPYAEQMFQTGNELEAMLRAQPDEQQIPFRVGVADVVPKSIVYRLIAPTMELSEPIRITCREDKLERLLADLAIQRLDLVISDSPMPTHLDIKGYSQKLGECGISFFATQTLADQHGGDFPQCLQGAPLLIPGAETVVRSRLQRWFAEQQIQPRIIGEFDDSALMQAFGQSGSGIFIAPSVIADEVVRQYGVALIGQTDAVTESFYAISVERKVKHPGIVAITEGARRELFTALP
>NZ_CP017296.1|WP_014717957.1|1163669_1163921_+|hypothetical-protein
MKLNSLGAASLLALSLIGVSGCDQVEKSAQQVLGKATESAKQAIDDTHKAAEQALSEATQGLISPEKQEKDAENAAESDTKET
>NZ_CP017296.1|WP_014717958.1|1163952_1164702_+|TerC-family-protein
MDYLLQLAASPTAWVALATLIVMEIVLGIDNLIFISILTNKLPEKHRAKARRIGISMALILRLGLLSTIAFIVQLTTPVFEVFGQAFSWKDMILIAGGLFLVWKATTEIHHSMDPEPEEKATVSNTVTIGFAAAIGQILMLDLVFSIDSIITAVGMTEHLPIMIIAVVVSVIVMLVAAEPLAKFINDNPTVVMLALGFLIMIGMTLIAEGFGAHVPKGYVYAAMAFSAAIECLNIARRNRHARLLAARQ
>NZ_CP017296.1|WP_020302053.1|1164795_1165830_+|selenide,-water-dikinase-SelD
MNEPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQNLDPNLWVGNASRDDAAVYAIDDERGVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAPEIAREVIRGGRAVCDAAGIPLAGGHSIDAPEPIFGLAVTGIVQKRHMKRNDTATAGCRLYLTKPLGIGILTTAEKKGKLREADIGLARDWMCTLNKPGSRFGKLAGVTAMTDVTGFGLLGHLVEMADGSGLTARIDYAKVPRLPGVEYYLDQGCVPGGTLRNFESYASKLGRVQELHKRVLCDPQTSGGLLIAVTPEGDAEFHAVAAELGLALEPIGELLERQTNAVEVI

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Crispr_ID: NZ_CP017296_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_3

1259585-1259865

Orphan

Consensus_repeat	Method
CTGTTCTGGCCGCCTTTGCTGCC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP017296_3

>merge|NZ_CP017296|3|1259585-1259865|CRISPRCasFinder
CTGTGTTCGCCACCTTTACGCCCGGCTTCGGAAGCTTTTTCACGGTCGTTGGCAAAATTGCCGCCACTGTTCTGGCCGCCTTTGCTGCCCGCCTCGGCGGCGCGTTCGGGGTCATTCTTGAAATTGCCCCCGCTGTTCTGGCCGCCTTTGCTGCCGGCTTCAGCGGCGCGCTCGGGATCGTTCTTGAAGTTCCCGCCACTGTTTTGGCCACCTTTGCTGCCGATCTCCTGATAGAACTCTTTGTCATGGGACGCAGAAGTGGCCTCGCCGCCTTTTTTACC

>NZ_CP017296|3|3|1259585-1259865|CRISPRCasFinder
CTGTGTTCGCCACCTTTACGCCC	GGCTTCGGAAGCTTTTTCACGGTCGTTGGCAAAATTGCCGCCA
CTGTTCTGGCCGCCTTTGCTGCC	CGCCTCGGCGGCGCGTTCGGGGTCATTCTTGAAATTGCCCCCG
CTGTTCTGGCCGCCTTTGCTGCC	GGCTTCAGCGGCGCGCTCGGGATCGTTCTTGAAGTTCCCGCCA
CTGTTTTGGCCACCTTTGCTGCC	GATCTCCTGATAGAACTCTTTGTCATGGGACGCAGAA
GTGGCCTCGCCGCCTTTTTTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_003190478.1\|1260238_1260415_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|226252
NZ_CP017296.1\|WP_038449772.1\|1272101_1272848_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP017296.1\|WP_038449759.1\|1258954_1259506_-\|Clp-protease	unknown	unknown	gnl\|CDD\|223811
NZ_CP017296.1\|WP_019821488.1\|1258270_1258480_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038449757.1\|1258691_1258925_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_CP017296.1\|WP_038449753.1\|1253314_1253929_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628
NZ_CP017296.1\|WP_003190483.1\|1262624_1263080_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP017296.1\|WP_038449765.1\|1265017_1265683_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP017296.1\|WP_014718030.1\|1253932_1255906_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP017296.1\|WP_038449763.1\|1263447_1264797_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP017296.1\|WP_019821486.1\|1257229_1257544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038449769.1\|1268868_1271202_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP017296.1\|WP_038449771.1\|1271479_1272028_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP017296.1\|WP_038449761.1\|1260833_1262357_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP017296.1\|WP_038449751.1\|1252120_1253017_-\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|184001
NZ_CP017296.1\|WP_069868372.1\|1255908_1256832_-\|ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_CP017296.1\|WP_003190473.1\|1257945_1258215_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_051661075.1\|1266484_1268869_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP017296.1\|WP_038449767.1\|1265822_1266488_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP017296.1\|WP_019821483.1\|1252974_1253313_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_003190478.1\|1260238_1260415_-\|general-stress-protein	gnl\|CDD\|226252	COG3729, GsiB, General stress protein [General function prediction only].	0.000339269
NZ_CP017296.1\|WP_038449772.1\|1272101_1272848_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	2.05577e-85
NZ_CP017296.1\|WP_038449759.1\|1258954_1259506_-\|Clp-protease	gnl\|CDD\|223811	COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	3.28201e-33
NZ_CP017296.1\|WP_038449769.1\|1268868_1271202_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	6.16363e-60
NZ_CP017296.1\|WP_038449753.1\|1253314_1253929_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	1.59437e-111
NZ_CP017296.1\|WP_003190483.1\|1262624_1263080_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.36549e-11
NZ_CP017296.1\|WP_038449765.1\|1265017_1265683_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.74794e-48
NZ_CP017296.1\|WP_014718030.1\|1253932_1255906_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP017296.1\|WP_038449763.1\|1263447_1264797_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.91832e-68
NZ_CP017296.1\|WP_038449757.1\|1258691_1258925_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	1.14484e-11
NZ_CP017296.1\|WP_038449771.1\|1271479_1272028_+\|fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	3.37902e-13
NZ_CP017296.1\|WP_038449761.1\|1260833_1262357_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.66996e-55
NZ_CP017296.1\|WP_038449751.1\|1252120_1253017_-\|protoheme-IX-farnesyltransferase	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	4.10167e-89
NZ_CP017296.1\|WP_069868372.1\|1255908_1256832_-\|ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	7.15664e-134
NZ_CP017296.1\|WP_051661075.1\|1266484_1268869_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.04658e-71
NZ_CP017296.1\|WP_038449767.1\|1265822_1266488_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.89742e-53
NZ_CP017296.1\|WP_019821483.1\|1252974_1253313_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	1.30542e-32

>NZ_CP017296.1|WP_038449759.1|1258954_1259506_-|Clp-protease
MPLHIINFTAPVTASTCSQLIEKASLAVQQDAQGLVLNIATMGGECSYGFTMYNFLLSLPIPVHTHNLGTVESMGNIIFLAGERRTACKHSKFLFHPFHWHVQGAVDHSRMSEYAMSLDYDLQLYARIVAERTADAVEKLETEKYLIAAPRILDPQQALTAGLIHGIELPVIKAEYVSSFIHS
>NZ_CP017296.1|WP_038449757.1|1258691_1258925_-|DUF2934-domain-containing-protein
MDEETIRLTAYRIWEQQGKPDGQDFVHWLQAREELTTPPTDGLAGSIESSVTPPNPDRSKRQATAAGQKTPSRKPNS
>NZ_CP017296.1|WP_019821488.1|1258270_1258480_-|hypothetical-protein
MIHLQANRSCLQCKQPYESTLDDPDFLVSSASDMLCPACKQHYAADLMKEALQRSVQKLCMLQERRKKQ
>NZ_CP017296.1|WP_003190473.1|1257945_1258215_+|hypothetical-protein
MKNSLYVIEYEYHHEPKSFIIRAEVMNNAEAWHWACCDAGIGIIPRSRNEKIKRISKPLAERYGLENVRWRPSGSIPFIAKPYVPPPPE
>NZ_CP017296.1|WP_019821486.1|1257229_1257544_+|hypothetical-protein
MFIRGNTYKAWVSKALKEKCFTREVENGCHIEVRARERDDADIEVLLCVYTATGQCVVERIKQLPGAEWTVNDALKRGIDQAERIAGGESGRLPCADAHVHDDD
>NZ_CP017296.1|WP_069868372.1|1255908_1256832_-|ubiquinol-oxidase-subunit-II
MKRAMGYCLVTITSLFLLTSCNLVVFNPKGQVATDERDLIILATGLMLLVVVPVIVMMFVFAYRYRATNKKARYSPRWASSHKIEAVVWGVPLLIIIVLGWVTWETTHALDPYRPLESDTPPINVQVVATDWKWLFIYPDLGIASVNELALPVHTPVSFTVTSDAAMTSFFIPALGGQIYAMAGMQTKLHLIANETGEFRGIAANYNGPGFSDMHFSTLSLSTADFQTWVTKVKGAATSLDHSTYAQLAKPTLKHPVTYYSAVQERLFLDIVDKYEGMNKANKPRRSPLSDAAQRTDQHPSLLAEER
>NZ_CP017296.1|WP_014718030.1|1253932_1255906_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MFGKLSWDAIPTTEPIVMYTLAIVGLIGVALVGSITWKRKWGYLWREWFTSVDHKKIGCMYIIVALVMLLRGFSDAIMMRTQQAMAASGGPGYLPPEHYDQIFTAHGVIMIFFMAMPFVVGLMNIVVPLQIGARDVAYPFLNALSFWLFVVGAALVNISLGVGEFARTGWVAYPPLSELGYSPGVGVDYYIWSLQISGIGTLLTGVNFFVTILKMRTEGMTLFKMPVFTWNALCTSVLILAAFPILTATLLMLTLDRYLGMHFFTNEAGGNPMMYVNLIWAWGHPEVYILILPAFGVFSEIAATFSSKRLFGYVSLVWATIAITVLSFIVWLHHFFTMGAGGNVNAFFGIMTMIIAVPTGVKIFTWLFTMYRGRVRFETPMLWTLGFIVTFSIGGMTGVLLAVPGADFLLHNSLFLIAHFHNVIIGGAVFGYMAGLTYWFPKAFGFRLNDKLGRIAFWCWLVGFYFAFMPSYVLGFMGMTRRLNHFDNPEWRPWLLLELVGVAIILCGVAAQALQLFVSIRNRHQYRDLTGDPWDGRTLEWATASPPPLYNFAEQPKVNDLDAYWGMKERGVSTLSHTDYRSIHMPRNTASGLVISLFALVCSFALVWHIWWMAAFGLVASVVAFVVRSYDEDTDYFVPAQEVARIETARLKDLAEA
>NZ_CP017296.1|WP_038449753.1|1253314_1253929_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MSNIVMEKDIAHTHEQGHEDAGSLSLFGFWIYLMTDCILFATLFAGYAVLRDSVAGGPSSMDIFELPYVLAETMLLLLSSITYGYAMLAMNHGKQRDVLRWLGLTFVLGAGFIAMEINEFHHLIAEGYGPDRSGFLTAFFTLVGTHGAHVFTGLIWMAVLMVQVKQRGLTSTNATRLSCLSLFWHFLDVVWICVFTVVYLLGVV
>NZ_CP017296.1|WP_019821483.1|1252974_1253313_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MYKQSSLHSSAGTSHGSSRSYLVGFLVSVLLTLIPFGLVMFPSLPRTFTAWLVVALGAIQIVVHLKFFLHLDTAEEQRWNLIALIFSAVIILLLVGLSLWIMDSIHHNMLAH
>NZ_CP017296.1|WP_038449751.1|1252120_1253017_-|protoheme-IX-farnesyltransferase
MDHGQYSSQHAGALKHWRGLFNTAIELTKPGIIVGNLASVLGGYLLAASGHVASVTHGLATLLGTALVIGCGCVINNCIDRDIDRRMVRTCHRPLALRTIRVSTAAGYGIVLGACGFGLLWGGSNALACGLAMVGLVIYAGVYTYWLKRRSHWATLIGSVSGAMPPVIGYCAVTGRFDLTAMLLIVVFCCWQMPHSHAITVMRREDFRAAGLPLLSLAQAHRQIQAYMLAFLASALMLGAVAQMAALYFVVMLGLGGYWLNLAASSTRLTDPTGWARRIFGFSIVLVLALNLALAVLR
>NZ_CP017296.1|WP_003190478.1|1260238_1260415_-|general-stress-protein
MTTSNKNPGNFANDREKASQAGKKGGQASGGNFANDREKASEAGRKGGQNSHGGGRKS
>NZ_CP017296.1|WP_038449761.1|1260833_1262357_+|sensor-domain-containing-diguanylate-cyclase
MKRDTRLVMLLLLVIGCSLTSLTIWKVLSSRDRALAEVDVHGLNLTQALNTYTEGIVRQSSLLLLGLVERLETEGSGPVQIQRISTLINLQQPLMPQLSGITIYDHQGRWLLSSNRAIPEGANSSDRAYFIHHRDDPSAEPFIGPPIQSRANHEWVVTISRRFNDAAGNFAGVVAVTLGVENFLRVFGKLDVGQEGAIGLSYADGTLLVRYPFREQDMGRNFSTSPIYSKYLVDQPVGTAAYTSSLDGVERLYAFRKSETLPLITTVALGKHEALAAWRIEAALSAVVVAGLLGLTGLIGWFLILDIRRRTAAEEALRVAQQQLLDSNRQLALLAKKDALTGLANRRCFDETLAVEARRAQREGTSLALLMLDIDHFKRFNDAFGHVAGDACLQAVSTLLETCVRRPSDLVARYGGEEMAIILPATDSTGAAVVAQRILSRLQQEHITHPGSPFGRVSVSIGVATGMGSRLEPVLGLVEAADAALYGAKAAGRNGFNVHPAHVTSSG
>NZ_CP017296.1|WP_003190483.1|1262624_1263080_-|GNAT-family-N-acetyltransferase
MAEYLLPPAAPHWLIRQATPDDVHALVALDAYATEHASRRVFIYDAVVRQQCLVAADANVCAGYLVLTHDFFNHGFIALVVVSPLYQRQGVALRLLSAAEAACKTPKLFASTNASNGASQALLTKAGFIPSGQIENLDDNDPERVYVRFIR
>NZ_CP017296.1|WP_038449763.1|1263447_1264797_+|EAL-domain-containing-protein
MILNVAVPNEFSALRVITLASDAACAHRLASALSGMGVLPLANVDSLDALQAWLDDYPVDVIVSEIRPECGDGLMLPSLLKARLESGKLAQFPGILWMGETTLGAPGGAADGARTSARERSAKPLWIKYLGGVAVSALESHARLARAAGIFVEIVREGGTLDLGDALRATVLTRVQPDPSLRKNTFDALAEDEVIHALTTGDGLRFVFQPQFELLSRRIVGAEALVRWKHPRFGEVPPSVLMPLVNRLGLDLLLFSLVEMWTIKVMLSLKRANIQIPIAVNASAKTICTPNFADRLAARMRQAELPNRLLKIELTEDVPEPNELYLSASLTAIRAKGFQVSMDDFGTGAATFALLANLSFDEMKIDGSFVRGVEQHSSSRNVIAGIVNWARLLNLSLVAEGIEDESTIPLLHRLGCRVGQGYALARPMEIDAFLNFVTQQNSNGASAIE
>NZ_CP017296.1|WP_038449765.1|1265017_1265683_+|response-regulator-transcription-factor
MKRLHIALLDDHAIVRHGLVNRLVQEPDFEVVGVYSRSRDLMAGLATEPAEILLLDFVLGPCELDGISLIRALRVKFPTCRILIFSTHHDAATAILALRVGARGFLGKGEDMEQLICAVRLVASGAVYLSPDMAYRVAEATAVSYDGEAKGRDEALRFVSLSAREQEVIRCYLAGMTITEIAEKFHRSIKTISSQKASAFRKLGVMSNNELFRIRHIIEGV
>NZ_CP017296.1|WP_038449767.1|1265822_1266488_+|response-regulator-transcription-factor
MKTIRIALLDDHAVVRHGLANTLAAEANFEVVGIYEKSRDLIAGLVTAPADLLLLDFSLNPNELDGVSLIRALRVKFPNCHILILSSHHDPATVGLAMRVGARGFVGKGEDMSQLVKAIRKVAAGAVYLNTDMTYRLAETVTGETRESTSEERDALALAELTSREQEVIRCYLAGMTVSEIAEKFNRSIKTISTQKTSAFRKLGVTSNNELFKLNKIIGTP
>NZ_CP017296.1|WP_051661075.1|1266484_1268869_+|response-regulator
MKRALCAIALCGLMVVPAVRAGPVVLSAEQKDWVQTHPVLRVGVVEDLLPFEYISDAVVRGRSIEYLQLVTAATGLQFTFVPGKTLAEREKMLLEGQVDLLSSYLRFRSEPTTKGLRTLAYESTSPVIVTRVESPDAFDLDQLQGKTIAIPTNVAYYEQIFRRKGVQANFKKSASALEILTSVEDGSADAAIASAIFLTPYLYQRFQGILEVSGVLGSQVLDVSMATRTDQVMLYSILEKVFASITVEQRNRLYGRWYQDLDLNVPSLPSIAAHYLHVLILGALVLVSLCALLYRGQRQRRLAVRNEQEKTMFLAVMGHEIRSPMNAVLAAMELLGHTRLNQQQRHLAHLANSGANALARLLDDVLDRPGSVAKLPRLAFEAIDVSALVQGVVGLHRLRAREKKLSLNSHIQAQLPLLLLDSSRLTQIFHNLISNAIKFTDTGSIDIDVALATLPDGSPQLQIEVRDSGVGISEAVQAALFQPYAQARESSRRTGGTGLGLMICRQLVDLMHGALTLTSEQGTGTTVTIRLPVSIGEEPPVLLAQAAPSTQPTSSGLRILVVEDTYANQEVLRAQISALDCQPVIAANAAQAWPLFRETVYDLVLMDCDLPDEDGYGLVRRLRALEIQLGRIRSPIIAISALTGDRHLQRCIEAGMDATLSKPIRLGQLSEVIERWCGVKLAAPSTSLMAPLLDQASIYREMAGDLANLIKAVALCDRASAQHVAHRLHGAALIMEWAALAQAAEYMERLLYGEHEWGPVHAQALQPLLLHWAALSGDTALDVLPATPVQRTAR
>NZ_CP017296.1|WP_038449769.1|1268868_1271202_+|transporter-substrate-binding-domain-containing-protein
MRRLLVVLALVCLPASVGVYASSPPMALTQQEVAWIAANPVLRVGVFEDLLPFEYMSSGQLRGLSAKYLRLIGLRTGLHFEPVLTTTRSARKDMLISGEVDILSTRRRSDDPAQDRGMLYTLPYNTSSTILVSRFGDQPLAGLQQLAHKRLVMLGREVYGAFLRHEAPGVTIITAQNAVDMMAMVKDGKADAAIASEWLLIPYLSRQYQGVLLISGVVPQLHTGVSMAVRDSDEILLSILEKALTSITGDERKAIFDAWFADMNLDIPTIRSIAAHYAGELWLLLAIVLLLIILVWQSRLQRRRAVQREREKAMFLAVMSHEIRSPMNAVLAAVELLEHTPLDEQQRHFTGLANTGANTLLRLVDDVLDISKMEAGQLRLNLEPVDLWSLLQEQVDDYRGYAEEKRLTLTLTGQRPVVSALLDDQRVAQVLRNLISNAIKFTEHGGVEVQLLLPDAQPGATSQALIRVVDTGIGLSDQAQAALFRPYARARQSFKRSGGTGLGLVICRRLVRLMQGELTLSSVPGSGTQVEVRLPVEWAGALESPVRAADSVAAPIEVSFWVLVLEAEYADQQAVKALLQGFGLGVLSADDDEEALALFNKHRVALVLIDEHHAFNLSRALRDVERQQQYGHCPIIAMSQVTGNAYLERCFAAGLDGVLSKPVRQDKLQQMIELWCDQVPVAATQVHGASRHEREGPQEALRPDMNRLFSAVALRDRPVAMQAAHRLQGAAQTAGWAAIAAGAEKVELLLHDEVSWPTVAVARQLSLMMDDWTAASY
>NZ_CP017296.1|WP_038449771.1|1271479_1272028_+|fimbrial-protein
MNYKARVLAALVAATATSAAMASDGTINFNGELKAETCQVAVNGAAGSAGTTVTLPTISTASLTSSGQVAGQTGFSIQLSKCSAALKTAAAFFEAGGSVDPASGNLKNIGGGATKVQLQLIDASNGKSIKAGDTAQVASTSRIAIDATALSADLPYAVQYYAQAATTPGTVISNVTYSINYQ
>NZ_CP017296.1|WP_038449772.1|1272101_1272848_+|fimbria/pilus-periplasmic-chaperone
MPCILPFKQMLLASLVAIGCSQALAGVVITGTRVIYPADQKEVTVKLNNNGTQPALMQAWIDTGSVESTPTSSKAPFLLSPPVARIDPTKGQSLRVLFTGAALPQDKESVFWLNVLEIPPKPEAGADLNTLQMAFRSRIKLFYRPTGLAGTASEAIEQVQWQLVTARDGQGLALRAFNPSAFHVSLVELDLVSGSQRARSEDGMVGPGQTRQFPLPTLKTRPAPGAQVEFSAINDYGALIPTRTALKP

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Crispr_ID: NZ_CP017296_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_4

1311982-1312082

Orphan

Consensus_repeat	Method
TCCAACTGTGGGAGCTGGCTTGCCTGCGA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP017296_4

>merge|NZ_CP017296|4|1311982-1312082|CRISPRCasFinder
TCCAACTGTGGGAGCTGGCTTGCCTGCGAAGACGGCCTGCCAGCCGACGCATTTCTACCTGACGCCCCGCAATCCAACTGTGGGAGCTGGCTTGCCTGCGA

>NZ_CP017296|4|4|1311982-1312082|CRISPRCasFinder
TCCAACTGTGGGAGCTGGCTTGCCTGCGA	AGACGGCCTGCCAGCCGACGCATTTCTACCTGACGCCCCGCAA
TCCAACTGTGGGAGCTGGCTTGCCTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_020302070.1\|1297808_1298984_+\|XylR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380485
NZ_CP017296.1\|WP_019817285.1\|1306137_1307058_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_014718070.1\|1316428_1317421_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226324
NZ_CP017296.1\|WP_014718067.1\|1308489_1309581_+\|NADH:flavin-oxidoreductase/NADH-oxidase	unknown	unknown	gnl\|CDD\|239242
NZ_CP017296.1\|WP_020302091.1\|1317431_1319012_+\|aldehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|143447
NZ_CP017296.1\|WP_019817286.1\|1307090_1308089_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP017296.1\|WP_038449806.1\|1319028_1319892_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_CP017296.1\|WP_003190542.1\|1304986_1305877_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226304
NZ_CP017296.1\|WP_038449809.1\|1319931_1320918_+\|arabinose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380482
NZ_CP017296.1\|WP_069868376.1\|1320914_1322417_+\|L-arabinose-ABC-transporter-ATP-binding-protein-AraG	unknown	unknown	gnl\|CDD\|183077
NZ_CP017296.1\|WP_019817284.1\|1300300_1302709_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP017296.1\|WP_019817327.1\|1323510_1324659_-\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP017296.1\|WP_038449814.1\|1322426_1323395_+\|L-arabinose-ABC-transporter-permease-AraH	unknown	unknown	gnl\|CDD\|183076
NZ_CP017296.1\|WP_003190551.1\|1312390_1313113_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP017296.1\|WP_014718064.1\|1302904_1304848_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP017296.1\|WP_019817288.1\|1313161_1314898_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|235708
NZ_CP017296.1\|WP_003190554.1\|1315089_1316412_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP017296.1\|WP_038449799.1\|1298980_1300243_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|335962
NZ_CP017296.1\|WP_032903511.1\|1309770_1311900_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
NZ_CP017296.1\|WP_003190545.1\|1308099_1308399_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_020302070.1\|1297808_1298984_+\|XylR-family-transcriptional-regulator	gnl\|CDD\|380485	cd01543, PBP1_XylR, ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.09351e-94
NZ_CP017296.1\|WP_014718070.1\|1316428_1317421_+\|hypothetical-protein	gnl\|CDD\|226324	COG3802, GguC, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP017296.1\|WP_014718067.1\|1308489_1309581_+\|NADH:flavin-oxidoreductase/NADH-oxidase	gnl\|CDD\|239242	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.	0
NZ_CP017296.1\|WP_020302091.1\|1317431_1319012_+\|aldehyde-dehydrogenase-(NADP(+))	gnl\|CDD\|143447	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.	0
NZ_CP017296.1\|WP_019817286.1\|1307090_1308089_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.67361e-41
NZ_CP017296.1\|WP_038449806.1\|1319028_1319892_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	6.72618e-81
NZ_CP017296.1\|WP_003190542.1\|1304986_1305877_-\|hypothetical-protein	gnl\|CDD\|226304	COG3781, COG3781, Predicted membrane protein [Function unknown].	1.08119e-62
NZ_CP017296.1\|WP_038449809.1\|1319931_1320918_+\|arabinose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380482	cd01540, PBP1_arabinose_binding, periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such as LacI and GalR.	1.07517e-110
NZ_CP017296.1\|WP_069868376.1\|1320914_1322417_+\|L-arabinose-ABC-transporter-ATP-binding-protein-AraG	gnl\|CDD\|183077	PRK11288, araG, L-arabinose ABC transporter ATP-binding protein AraG.	0
NZ_CP017296.1\|WP_019817284.1\|1300300_1302709_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP017296.1\|WP_019817327.1\|1323510_1324659_-\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	0
NZ_CP017296.1\|WP_038449814.1\|1322426_1323395_+\|L-arabinose-ABC-transporter-permease-AraH	gnl\|CDD\|183076	PRK11285, araH, L-arabinose transporter permease protein; Provisional.	1.5457e-171
NZ_CP017296.1\|WP_003190551.1\|1312390_1313113_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.06414e-53
NZ_CP017296.1\|WP_014718064.1\|1302904_1304848_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.97857e-70
NZ_CP017296.1\|WP_003190545.1\|1308099_1308399_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	2.67048e-12
NZ_CP017296.1\|WP_003190554.1\|1315089_1316412_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.57788e-98
NZ_CP017296.1\|WP_038449799.1\|1298980_1300243_-\|carbohydrate-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	2.18765e-96
NZ_CP017296.1\|WP_032903511.1\|1309770_1311900_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	8.1627e-100
NZ_CP017296.1\|WP_019817288.1\|1313161_1314898_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|235708	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.	0

>NZ_CP017296.1|WP_032903511.1|1309770_1311900_+|TonB-dependent-siderophore-receptor
MRRTLISICVLQAFSPFAWAEQAPAENASIELQATNVTATADLESAQGPVQGYHATRSASATRTDTAIHETPQSISVVSKDVVEDLGATRLQDALDYAGGVGRANNFGGQGLTTFTVRGFTTGEFYRNGFPINRGYPNMPDANTIERLEVLRGPATMLYGRGDPGGTFNVVSKQPLAERTVTLGSQLNDQGMKRGTLDASGPLDEEGRLAYRLNVVGEGGDTFRDHVETERYGVTPVITWQATDDTKVTFEGDFMRNNHPLDRGLTRFPNQRGTPSRDTFWGDKDAGKLHNDNNMAQLRFEHVLNDNWTLGGGFQWLDGSLKGNAIEANGPGSLGADGQTLQRNFNYRKLEWTDKDYQLNLTGHFSTGGFDHTLLTGIEYEDYDYKSIIQRSSDEVGTYPVDIFNPVYGQTRPALTRTPTHDKENLKTYAAFVQDQVALTERLKVLAGARFERFEHDYQNYVGKSWQAADNAVTPRVGVIYDLTDTVAVYADAARSFKPNASASREGGGFAPEKGKSYEMGLKWEALDRQLSVDAAIYQIEKKNVLTPDPVDSAFNVAAGQVRSRGFDLNVAGNLTPEWRVIGGYAYVDAEVTRDNTLRSGTRLMNIPRNSFSLLNVYEFQDGALKGLGLGAGGKYVDQRAGQTANTAFSMDAYTVVDLLGYYKVNERVRLNLDVKNLFNREYEEGAFGNIYAYPGAPRTVQVGIAYTL
>NZ_CP017296.1|WP_014718067.1|1308489_1309581_+|NADH:flavin-oxidoreductase/NADH-oxidase
MSALFEPFKLKDVTLRNRIAIPPMCQYMAEDGMVNDWHHVHLAGMARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPMVKAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIPASDARSWETIAPSAIAFGANLPNVPRAMTLEDIARVQQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNQRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVIEYDGRDEQTLTESIELARRFKDGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAGIPVTSAWGFGTPQLAQGALQAGHLDLVSVGRAHLADPHWAYFAAKELGVDKSSWTLPAPYAHWLERYR
>NZ_CP017296.1|WP_003190545.1|1308099_1308399_-|helix-turn-helix-transcriptional-regulator
MRAFKHPTPQELTLERVLYALSDPVRLDIVRYLANVPEATCGELDGGRPKSSMSHHFRVLRDAGLVHTRNVGTTHMNSLRRDELESRFPGLLASVLSQH
>NZ_CP017296.1|WP_019817286.1|1307090_1308089_+|GGDEF-domain-containing-protein
MRSLLSPAVTQAEWVGIIAWVGMLLIPAALKLDFYMLAVTVGLLIVCRVHATTTNFLLWRVLGVTYMVLLSVGFAYLIHMHAELRIYGLPLAVTLVVGSAILFISVQDYLADALLIWLILWPPMQADIYAGTEVYLLLFCAASVSIGFILSYSYLKNLRSVLLVESEFRALAETDYLTSILNRRAFMQSFEKLLGGERGGYFIMLDIDSFKEKNDLYGHDVGDKILRAMALCLKNAKGSHSFGRIGGEEFGVLLQGDDVEVACDYALDLLQAIRSSVPAPHHYTCSAGMARFSPGDELSAVLKMADKNLYGAKRNGKDCVHLDGALLQAVLS
>NZ_CP017296.1|WP_019817285.1|1306137_1307058_+|hypothetical-protein
MGPGCRDFVAEISGIKLDDQGSFMRVSSLKLAMCNTAQALERHKDFESCMRAHYHVLLVPYSKRPFFYKSALKYSRLMVSFALLSQYFSTPLPLLAEVKALCVTRKYCSKNSLESIFLLFRALGFMEVAPHPEDSRFRVYAPSDEACREARLMLTALTESLALLYPEREVFRQMRDLDDREFLALYFKGFAMILAAELTVDVLLPECYWLVKRDAGHLLMLAIYNDAFAPENDRATFRSSSYLALAKQLSVSKTHIIRMVQEGVEKGYFKAHSKTRLEVLPPFASLVKRFMAFSFAMGLHAIEMGA
>NZ_CP017296.1|WP_003190542.1|1304986_1305877_-|hypothetical-protein
MKAALLKKYRLIIKTMGYVGWALFWLLLWDVAVTVDFMLFLTAKINLPLMPLTLLGSALVVLISFRNSSAYNRWWEARTLWGAMVNNSRSFARQVLTLLDDAPGEVNPVKSTLLRRHVAYVNCLAAHLKGQPCPEEVRAFIPAEEFARNGATNNFANDILTGSASLLAREYQAGRLDSIRLARLESTLVDLSNAQGGMERIANTPLPYPYVYFPRLFISLFCLIVPVGLVESLGWFTPLASTVVGFMLLAIERIGTDLQSPFNSSEHQIQMESICETIEKNLQSMRRDALVGDPIA
>NZ_CP017296.1|WP_014718064.1|1302904_1304848_-|methyl-accepting-chemotaxis-protein
MNIKQKLTWAFAAIACVPVILVAIIVVLNLREGALANFLDSSGREIRQIDNGMQQFFDGISQNVDFVAKDPRVIAAKNLKSYAGADAAQIPLTPTNTELLAIFDQFAKSHPSTAYLSLGLSDGGYASWPDDAKLTQYDPRTRPWYQAAIAAPGKTVRTGAYYWAPDDVVLIGTVRTVADATGNVLGVVGLDVSLKQLTELVRTIKLGDSGYLMLVEADGNVLVDPSDATHNFKPLAGLGANYAELAKHGDGVTEVSIDGVAYMANVVSSKDLGWRFIGLIKRDEVMAGATRLTWLIAAIAAVLAVVFAIVGASFARVIVRPIRGVADGLQEIAEGEGDLTRQLKVQGKDETASLAGWFNQFLSMIAQLVQRIGNASSDLQTAAADTSAVANNMNQAAGRQREAVELVSTAFNEMVATANEVARSCSAAATSADEGYRDVHTGQQHIGEATGSVLKLSEDLQKSTQTMQLLEQDSQNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDSLLGNLARRTQEVTQQMQGSLLVSNTSVERIQQARDSFDKIRGSVDSIRDQNTQIATAAEEQHQVAEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQLNGLVGRFKF
>NZ_CP017296.1|WP_019817284.1|1300300_1302709_-|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MKRASRAAGVSRFLLLGLGVVIALLGLALAVGGAKLVSLGGSWYFLLGGVAMAISGLLIARCKPAGAWLFAAFLVATAVWAVADVGLEYWPLFSRLFMFAVIGVVVALVYPLLAGKPARGAYGVAAVLALGVAVAAGNMFVAHPSVAPTGAGPGMTPVAAADAQKDWAHYGNTEGGSRFAALDQINRDNIDKLKVAWTYHTGDVAISDGNGAEDQLTPLQVGNKVFICTPHNNLIALDADTGKELWKNEVNAKSAVWQRCRGMAYFDASAPIAQPTQPNSSPILTASVPVGAQCQRRLLTNTIDARLIAVDADTGKFCEDFGTHGQVDLKAGLGNVPDSYYQLSSAPLMAGTTVVVGGRVADNVQTDMPGGVIRGFDVITGQMRWAFDPGNPEDKQAPTGDATYVRSTPNSWAPMSYDPLMNTVFLPMGSSSTDIYGVERTQLNHKYGASVLALDASTGAEKWVYQTVHNDLWDFDLPMQPSLIDFTPPGSDKAVPAVVIGTKAGQIYVLDRATGKPLTDVQEVPVKAANIPNEPYSLTQPKSVGMPQIGAQTLTESDMWGATPYDQLLCRIDFKGMRYDGLYTAPGTDKSLSFPGSLGGMNWGSISTDPVHGFIFVNDMRLGLWIQMIPSQNKAQASSGGEALNTGMGAVPLKGTPYAVNKNRFLSVAGIPCQAPPFGTLTAIDMKTQKVAWQVPVGTVEDTGPLGIRMHLPIKVGLPTLGGTLSTQGGLIFIAGTQDFYLRAFNSGNGDEIWKARLPVGSQGGPMTYVSPKTGKQYIVVTAGGARQSTDRGDYVIAYALP
>NZ_CP017296.1|WP_038449799.1|1298980_1300243_-|carbohydrate-porin
MTPTPHTAWRLALGLAFAAALPVQADDTTLTGDWGGLRRELDAQGVRFTGDYSGEAAYNAHGGQHRSARYSQNVKLGVQFDLGKLYGFTNGDRIQLTINDRRGNSASEDLVGNRLPIQENYGGLYTRLTELSYERTLFTPALNLKLGYMAMGNDLGGLDSGILCNFMNAGFCGHPLNMSGGSGWANYPNAHLGARLKYDFSPNWQLRVAAFNVDPSSNGNSSRAWHLGPKHTTGTVVPIELIYKHAGALPGEYKLGYYYDSSDVKRIGSNKDVSGRGGHYLLIDQAVWASQSSQGRSLHAFGQYSAASQAASPFTKWYGAGVVLYKPFEGRPRDTVALGYGRAVPNPRSRDVQELAAFNTGTAYPDLDTAEQLIELSYGYQATPWLTLRPDVQYIIEPGAFSGESIDNALVLGLQVKAVF
>NZ_CP017296.1|WP_020302070.1|1297808_1298984_+|XylR-family-transcriptional-regulator
MKTLPPVHRIALLFNGSKIYDRGIIAGIGNYLSSTRASWDLFLEEDFLCRLRGIERWQGDGIIADFDDPLIGEALAGSRLPVVAVGGSYEDVSKYPKGIPYVATDNHALMKLAYEHLVEAGLTRFACFSLPEAQANRWAQEREKAFRRLMQRDGLQVEVYRGLGTSAPLWDSAVEQQIAWLHSLPKPIGIIAVTDARARQLLQACLTAGIAVPEEVALIGIDNDPLTRTLTRVPLSSVIQGTETMGRTAAALLHQMLHGKPCTGTQVLVPPDAINVQASSLHQPLGNPYVMQALLFIRQYACQGIKTDQVAAYVGVSRSSLEAHFRKARGCSVHDEILRFKLAAAAKGLENHSLAIADIAARCGFTSAQYLHTVFRREFGCTPRQYQQGTN
>NZ_CP017296.1|WP_003190551.1|1312390_1313113_-|FadR-family-transcriptional-regulator
MDHQPPKPRKSQHAQIVQDLGMHIVSGRFKPEERLPMEATLCEEYQVSRSVLREATRVLSAKGLVYSKPRVGAVVRPRLKWHLLDPDVLSWLMQSTPHSEFFNTLAGVRRILEPEIAAMAATTATDEDIATIEHAYQGMETAKTHEELLQADLDFHRAIADATRNDLLAYMCNMLSLPLRESINITNRRPDIQGLSLPRHKAILTAIQNRDALGARHASLVQLDDTRVALDTVMNVLTPL
>NZ_CP017296.1|WP_019817288.1|1313161_1314898_-|dihydroxy-acid-dehydratase
MPDKKPGLRSAQWFGTADKNGFMYRSWMKNQGIADHQFHGKPIIGICNTWSELTPCNAHFRQIAEHVKRGVIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEEAIRGNPIDGVVLLTGCDKTTPALLMGAASCDVPAIVVTGGPMLNGKHKGQDIGSGTVVWQLSEQVKAGTITLDDFLAAEGGMSRSAGTCNTMGTASTMACMAEALGTSLPHNAAIPAVDARRYVLAHMSGMRAVEMVREDLKLSKILTKEAFENAIRVNAAIGGSTNAVIHLKAIAGRIGVELDLDDWTRIGRGMPTIVDLQPSGRFLMEEFYYAGGLPAVLRRLGEANLIPHPNALTVNGKSLGENTQDSPIYGQDEVIRTLDNPIRADGGICVLRGNLAPLGAVLKPSAASPELMQHRGRAVVFENFDMYKARINDPELDVDANSILVMKNCGPKGYPGMAEVGNMGLPAKLLAQGVTDMVRISDARMSGTAYGTVVLHVAPEAAAGGPLATVKEGDWIELDCANGRLHLDIPDAELAARMADLPPAQNLIVGGYRQLYIDHVLQADQGCDFDFLVGCRGAEVPRHSH
>NZ_CP017296.1|WP_003190554.1|1315089_1316412_+|MFS-transporter
MSQELRLIRRITLKLIPFLILLYLIAYVDRSAVGFAKLHMGADVGIGDAAYGLGAGLFFIGYFLFEIPSNLMLDRFGARRWFARIMITWGAITIGMAFVQGPHSFYVMRFLLGAAEAGFFPGVLYYITQWFPVRHRGKILGLFILSQPIAMMITGPVSGGLLGMDGILGLHGWQWLFIVIGTPAILLTWPVLRYLPDGPQKVNWMSEEEKAWLTGELHKDLQAYGQTRHGNPLHALKDKRVLLLALFYLPVTLSIYGLGLWLPTLIKQFGGSDLTTGFISAVPYIFGIIGLLIIPRSSDRLNDRYGHLAVLYVLGAIGLFCSAWLTVPVLQMAALCLAAFAMFSCTAVFWTLPGRFFAGASAAAGIALINSVGNLGGYIGPFVIGALKEYTGNLASGLYFLSGVMVFGLLLTLVVYRLLERKHVLPVDQFAASARGATRT
>NZ_CP017296.1|WP_014718070.1|1316428_1317421_+|hypothetical-protein
MRLVQFELSNGERRVGVVEGNQVREVRGAHSVRELALAAIEAGGKLQQQVQALGLGASHDYTALLADHKILPPLDHPDPAHMLISGTGLTHLGSASARDKMHQQAGDDSAMTDTMRIFKWGVEGGKPGAGQAGVQPEWFYKGDGSIVVRPGQAFPVPPFAEDAGEEPEIGGLYVIGHDRKPYRLGFAVGNEFSDHVMERKNYLYLAHSKLRSCSYGPELRVGELPEHLAGTSRILRNGEVIWQNEFLSGEANMCHSLENLEYHHFKYSQFLKPGDVHIHFFGTATLSFADGIRTQPGDVFEISQAEFGAPLINGIGSSDAAFEPGQVTPL
>NZ_CP017296.1|WP_020302091.1|1317431_1319012_+|aldehyde-dehydrogenase-(NADP(+))
MTPFLGHNYIGGQRSANGSTKLQSIDATTGEALPQDFYQATAQEVDAAAQAAAQAYPAYRALSAARRAQFLDAVADELDALGDDFVELVCRETALPAARIKGERGRTSGQMRLFATVLRRGDFYGARIDKALPERQPLPRPDLRQYRIGLGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVFKAHSGHMATAERVADAIIRAAEATEMPAGVFNMIFGGGVGEALVKHPAIQAVGFTGSLKGGRALCDMAAARPQPIPVFAEMSSINPVIVLPQALHARAESIARDLTASVVQGCGQFCTNPGLVIGIASPAFTAFTQQVAQLIGEQPAQTMLNAGTLGSYGKGLEKLRSHPGIQHLAGSAQSGNQAQPQLFKADVRLLIDGDEVLQEEVFGPTTVFVEVADQAQLSAALQGLHGQLTATLIGEPTDLHQFAELTPLLEQKVGRILLNGYPTGVEVCDSMVHGGPYPATSDARGTSVGTLAIDRFLRPVCFQNYPDSLLPDALKNANPLRIQRLVNGTPSRESL
>NZ_CP017296.1|WP_038449806.1|1319028_1319892_+|SMP-30/gluconolactonase/LRE-family-protein
MSLSAVTPHRARLGEGPFWDVPTQALYWVDIAARQALRLMGGQLQVWQLPEHVSAFIPCQSGDALVTLSSGVYRLDLATEALTLLCVADPQTGNRGNEARCDAQGRLWLGTMQNNIGEQGEDLPITRRSGGLFRIDADARVTPLLAGLGIPNTLLWNEEGSQVHFGDSMDGTLYQHSIQADGQLGAAQAWFGPHTRGGPDGSAMDADGYIWNARWDGSCLLRLTPSGEVDRIIELPVSRPTSCVFGGPELTTLYITSAASPLDHPLDGAVLAIEVDVPGKPCHRFAG
>NZ_CP017296.1|WP_038449809.1|1319931_1320918_+|arabinose-ABC-transporter-substrate-binding-protein
MKKVLRVLAAAVALSSLSSIVSAEDVKIGFLVKQAEEPWFQTEWAFAEKAAQDKGFKLIKIAVPDGEKTLSAIDSLAANGAKGFVICPPDVSLGPAIVAKAKVNGLKVMAVDDRFVDAKGNFMEDVPYLGMAAFEVGQKQGAAMAAEAKKRGWDWKDTYAVINTFNELDTGKKRTDGSIKSLEEAGIPKDHILTAALKTLDVPGSMDATNSALVKLPSGAKNLIIGGMNDNTVLGGVRATESAGFAAANVIGIGINGTDAIGELKKANSGFFGSMLPSPHIEGYKTAEMMYEWVTQGTEPPKYTAMDEVTLITRENFQAELTKIGLWK
>NZ_CP017296.1|WP_069868376.1|1320914_1322417_+|L-arabinose-ABC-transporter-ATP-binding-protein-AraG
MTAAALRFDGIGKTFPGVKALDGICFTAHPGQVHALMGENGAGKSTLLKILGGAYIPSSGTVQIGAQTMAFKCAADSIASGVAVIHQELHLVPEMSVAENLLLGHLPTRFGVVNRSLLRKQALACLKGLADEIDPDEKLGRLSLGQRQLVEIAKALSRGANVIAFDEPTSSLSAREIDRLMAIITRLRDEGKVVLYVSHRMEEVFRICDAVTVFKDGRYVRTFEDMSTLTHDQLVTCMVGRDIQDIYDYRPREQGEVALKVDGLLGPGLREPISFQVRKGEILGLFGLVGAGRTELFRLLSGLERASAGSLELCGHALQLRSPRDAIAAGVLLCPEDRKKEGIIPLGSVAENINISARGAHSTFGWLLREGWEKGNADRQIQAMRVKTPNAAQKILYLSGGNQQKAILGRWLSMPMKVLLLDEPTRGIDIGAKSEIYQIIHNLAASGIAVIVVSSDLMEVMGISDRILVLCEGALRGEQLREHATESNLLQLALPRGLAN
>NZ_CP017296.1|WP_038449814.1|1322426_1323395_+|L-arabinose-ABC-transporter-permease-AraH
MTIQNNALPSARKPLDMRALLDNWAMLLAAVGIFVLCALLIDNFLSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSVIACAGVVAAIVMRDTDSVMLGIGAALLMGLMVGLINGIVIAKLRVNALITTLATMQIVRGLAYIFADGKAVGVSQEQFFVFGNGQLLGVPVPILITIVCFLFFGWLLNYTTYGRNTMAIGGNPEAALLAGVNVDRTKILIFAIHGLIGALAGVILASRMTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILLLAVVIDRMKQR
>NZ_CP017296.1|WP_019817327.1|1323510_1324659_-|galactose-mutarotase
MKHPRYLLSGLALSMLIASGGAHAAGLSSEHKPFGKTNDGTAVEQYVLRNSHGMQATVITYGGVLQSLKVPDKHGKLDDVVLGFDDVQGYQGGTAFFGATIGRFGNRLAGGAFELDGKRYQVPLNDGPNSLHGGAQGFDKQVWQAKSVKDKDSVGVTLTYLSKDGEMGFPGNLKTEVTYRLNDHNELHIDYTATTDKPTVLNLTNHSYFNLAGAGNGDILKQVATLHASHYTPVNATLIPTGELAPVKGTPMDFLKPTPIGQHIKADHPQLKFAEPKQGGFDFNWALDTKGDVKQLAAEVHDPESGRRLQLYTTEPGVQFYTSNFLDGSVKGKGGETYQHWSGFTLETQHFPDAPNQPSFASTRLNPGQTYTQHTIFKFTAD

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Crispr_ID: NZ_CP017296_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_5

1375038-1375142

Orphan

Consensus_repeat	Method
TGTGGGAGCTGGCTTGCCTGCGATGGCGGCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_5

>merge|NZ_CP017296|5|1375038-1375142|CRISPRCasFinder
TGTGGGAGCTGGCTTGCCTGCGATGGCGGCCTGCCAGCCGACACCTATCTACCTGACGCCCCGCGATCAATTTGTGGGAGCTGGCTTGCCTGCGAAGGCGGCCTG

>NZ_CP017296|5|5|1375038-1375142|CRISPRCasFinder
TGTGGGAGCTGGCTTGCCTGCGATGGCGGCCTG	CCAGCCGACACCTATCTACCTGACGCCCCGCGATCAATT
TGTGGGAGCTGGCTTGCCTGCGAAGGCGGCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_014718116.1\|1377274_1378144_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP017296.1\|WP_014718117.1\|1378213_1378846_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP017296.1\|WP_014718120.1\|1382192_1382609_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038449851.1\|1360738_1372126_+\|transporter	unknown	unknown	gnl\|CDD\|226973
NZ_CP017296.1\|WP_014718107.1\|1357888_1358443_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183232
NZ_CP017296.1\|WP_019817297.1\|1372242_1372926_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP017296.1\|WP_038449853.1\|1375475_1376906_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP017296.1\|WP_038449849.1\|1358515_1360327_-\|potassium-transporter-KefB	unknown	unknown	gnl\|CDD\|235131
NZ_CP017296.1\|WP_034133834.1\|1356272_1357028_+\|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl\|CDD\|236218
NZ_CP017296.1\|WP_080643481.1\|1382602_1382887_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_020303175.1\|1380032_1381262_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|235710
NZ_CP017296.1\|WP_038449855.1\|1378925_1379984_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|182329
NZ_CP017296.1\|WP_130175625.1\|1353779_1355267_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275228
NZ_CP017296.1\|WP_014718115.1\|1377064_1377247_+\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_CP017296.1\|WP_014718121.1\|1382936_1383248_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376019
NZ_CP017296.1\|WP_014718112.1\|1374511_1374982_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP017296.1\|WP_014718111.1\|1373143_1374388_-\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|181005
NZ_CP017296.1\|WP_032903701.1\|1381453_1381813_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038449847.1\|1357038_1357755_+\|phospholipase	unknown	unknown	gnl\|CDD\|223477
NZ_CP017296.1\|WP_019817302.1\|1355263_1356214_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_019817297.1\|1372242_1372926_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	4.43776e-08
NZ_CP017296.1\|WP_014718116.1\|1377274_1378144_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	6.27822e-20
NZ_CP017296.1\|WP_038449851.1\|1360738_1372126_+\|transporter	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	4.79746e-46
NZ_CP017296.1\|WP_014718117.1\|1378213_1378846_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	3.57788e-32
NZ_CP017296.1\|WP_014718107.1\|1357888_1358443_-\|hypothetical-protein	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	1.97106e-08
NZ_CP017296.1\|WP_014718115.1\|1377064_1377247_+\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	8.42438e-18
NZ_CP017296.1\|WP_038449853.1\|1375475_1376906_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.26244e-110
NZ_CP017296.1\|WP_034133834.1\|1356272_1357028_+\|precorrin-6A-synthase-(deacetylating)	gnl\|CDD\|236218	PRK08284, PRK08284, precorrin 6A synthase; Provisional.	1.94836e-155
NZ_CP017296.1\|WP_020303175.1\|1380032_1381262_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|235710	PRK06133, PRK06133, glutamate carboxypeptidase; Reviewed.	0
NZ_CP017296.1\|WP_130175625.1\|1353779_1355267_+\|hypothetical-protein	gnl\|CDD\|275228	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase. Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.	0.000227389
NZ_CP017296.1\|WP_038449855.1\|1378925_1379984_+\|diguanylate-cyclase	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	1.64601e-80
NZ_CP017296.1\|WP_014718121.1\|1382936_1383248_-\|hypothetical-protein	gnl\|CDD\|376019	pfam18593, CdiI_2, CdiI immunity protein. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. CDI+ bacteria also produce CdiI immunity proteins, which specifically neutralize cognate CdiA-CT toxins to prevent self-inhibition. Structure analysis of CdiI immunity protein from Yersinia kristensenii shows that it is composed of eight alpha-helices packed together to form a nearly spherical structure with weak structural homology to a putative TetR family transcriptional repressor. The CdiI protein fits into the curved cavity of the CdiA-CTYkris toxin domain where it most likely neutralizes toxin activity by blocking access to RNA substrates. This domain is mostly found in gammaproteobacteria.	3.31849e-14
NZ_CP017296.1\|WP_038449849.1\|1358515_1360327_-\|potassium-transporter-KefB	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP017296.1\|WP_014718111.1\|1373143_1374388_-\|methionine-gamma-lyase	gnl\|CDD\|181005	PRK07503, PRK07503, methionine gamma-lyase; Provisional.	0
NZ_CP017296.1\|WP_038449847.1\|1357038_1357755_+\|phospholipase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	3.06096e-38
NZ_CP017296.1\|WP_014718112.1\|1374511_1374982_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.35456e-47

>NZ_CP017296.1|WP_014718112.1|1374511_1374982_+|Lrp/AsnC-family-transcriptional-regulator
MPIKLDRTDKALLNALQGNARLTVAELAERVALTTSPCWRRVRTLEESGVISGYQAILSPKALGYGVTAFVSIMMESHTQEIARAFEQRLLAIPEIVACHNVSGRYDFLLEVVAKDLESFGEFAREVLQTLPCVKEIYSSFSYKSVRPLRVIPLPG
>NZ_CP017296.1|WP_014718111.1|1373143_1374388_-|methionine-gamma-lyase
MHTQHTSFGFCTRAIHHGYDPVDHHGALVPPIYLSATFAFPTVEYGAACFAGEASGHFYTRISNPTLALLESRMASLENGEAAVAFSSGMGAIAATFWTLLRPGDEIIVSQTLYGCTFALLHHGLGEFGIKVRHVDLTDLAALQAAFSPATRMLYCETPANPNLRLIDIAAVAELAHQQPNVTVVVDNTYCTPYLQRPLELGADVVVHSATKYLSGHGDITAGVAVSHQALAQRIRLQGLKDLTGAVMSPQDASLLMRGLKTLALRMDRHCSNAQALAEALQAHPAVESVIYPGLRSFPQYELATRQMKLPGGMIAFELKGGIETGRRFMNALQLFTRAVSLGDAESLAQHPASMTHSTYTPEQLAQHGISEGLVRLSVGLEDVADLLTDIQQALAKCSGANLRPAPTAVYAMK
>NZ_CP017296.1|WP_019817297.1|1372242_1372926_-|helix-turn-helix-transcriptional-regulator
MDELMNSHLFPQIGKVIASTGSRHFPRMLHDLILTQLAVDATHITQLHVSREGLGRRKISPVYTDSVAALGSEQLAAQLHLTGRKDDVRYVLSVYRSHPSDSFSAQERSMLQDFSALLLPMVEKHITALQPSLPDSPCAVPQHQGIDTLHRRIQERLVQSGLTLSNRELQVCVGLLAGRTAPELAEQLALKVNTIESYLKRAAIKLGISGRHSLLRWMYSTEDGTRF
>NZ_CP017296.1|WP_038449851.1|1360738_1372126_+|transporter
MDRRLATAALPRISALSLAIRLGVAGLVMGLASPDVFAACSPASPTAGATVTCTGVPTLLLIPNTFNSAVNTLTVNVTAGTKLNTLVGGVALSLTGNNTTLNNAGTIDPAVLGLVSALSGGVVIGNSTANALNITNAATGVINGTGALLGLNLASLGGMALNATNGVGGTTTIVNDGTIGSSFLLGLSLLSSDTPVVAVQGGGQVNMTNNGTLTGRVAFESSTTGNTFRNTGTISGGVSMGAASTNTFTAVTGSQVTNGGGLGLSLGGLIGVNLTFAPTGQVDGGAGGSNSLILENTTGVGGGSTGTGTASSANYVNFNNLAINSGTWTLQGPLVSGSTTLNGGVAQFNNNATFGSGVLTSNGGAIEATGNGLTLANLMTLGTGGLTVQGASTGLTLSGVISGAAGVSKAGTGELILSGTNTFQGGTTLNAGTLTLGNAAALGTGALTVAGASTLQSNAALTTSNAIALNANLTVDGVNPLTLGGVVSGGSGLIKEGVSSLALTGNNTYTGATALNAGSLVVGSNTALGASVLNASAGTTLDASAAVSLGNNLNLGGNLTLGGSNALTLGGVVAGLGGLIKNGPADLLLNQANTYLGNTALNSGKLVIGATGALGAGTLNAAAGTTLDASTSATLTNAINLAGNLGIGGSANLTLGGTVNGAGSLTKNGTAGLTLSGSNNFLGGTTLNAGTLTVGSNTALGLGNLTVGGAATLDSTSAVALGNGIALNAGLTVGGTNGLTLGGVVSGAGALIKDGLANLTLNGINTFTGGTSLNAGTLTLGTAGALGAGPLTVGGAATLDNSAALTLGNGIALNGDLTLAGNNDLNLSGVLSGASALIKNGLADLTLSGTNTFTGPLNIVSGSVTTGSAGALGNTSGVDVSAGAALNLGVNSSLAGLSGAGGVAIGGGLNLTVGGVNTSSTFDGDLSGAGSLIKVGTGTLTLNGINGITGNTAINAGTLDVDGSLGSASVNVNSGGTLTGSGSLLGTANINNGGHLALGSGTTLSAAGLNMSAGASLDVALGAPSLTSLMNVGGNVNLAGDLNVSDAGGFGAGVYRLINYTGGLTGALNVNTVPLGYGLGDLLVQTSVGSQVNLVVAAPNIRFWDGSNTLANGTVDGGSGTWTAGGTNWTSADGLSNQTWGGGFAVFQGAAGTVSVDGVQTITGLQFVTDGYSLVNGTGGQLSTGSGNFAVRVDPLATATLGVDITGAGVLNKLDTGTLVLNGANSYTGGTLLNGGTVVVGSNTALGTGTLTAAAGTTLDSNASVTLGNDAVLNGSLTVGGSNALALNGAISGTGGLVKNGTAGLTLGGTNTFLGPVALNAGGLILASNTALGAGVLNAAGGTTLDASTAVATTNAINLAGNLGIGGTADLTLGGAINGAGSLTKEGTANLILSGANAYLGGTTLNAGTLTLGSATALGLGNLTVGGAATLDNTAALSVGNGVVLDANLAVTGSNDLTLGGLVTGTAGLSKDGAANLTLNGVNTFQGGTSLNAGTLTLGTAAALGTGALNVNGAATLANSTPLVLANAVNLNAGLTVGGLNNNLTLAGVLAGSGSLVKTGTADVSLTGTNTFNGLFDVQSGSLTTLGNGALGVGAGVNLASGTSLNLGGSASLGALTGTGLATVGAGSTLSVGNNNLDSTFNGVVAGLGNLAKDGTGALTLGGLSVVTGDAQVNAGSLLVNGSLASANVAVGSGATLGGTGTLLGNVNIADGGHLAVNSGATLTTGSLLLNANANLDAGLGAPATGGTALVQVNGNLTLDGTLNVTDIGGFGAGIYRLIDYTGGLTNNGLLLGSLPVNIPASDLDLQTAIGNQINLLVNGSTNVQFWDGSQTTGNGTIEGGSGTWSAGGSQWTGVNGAFNTAWTPNSFAVFQGTAGTVTVDGAQAITGLQFVTDGYNMAGGAAGALTLFNGVGGNTAVRVDPGVTATLGVALNGGGTLAKLDTGTLVLNGANSYTGGTALDGGTLVVGNNSALGSGLLTTANGTTLDSNTAVSLANALNVNGSLTLGGSNALTLAGTVAGTGSLIKNGIANLTLSGNNTYAGPTALNAGGLILASNSALGSGALNAAAGTTLDSSTAVALANTVNLAGNLGILGTADLSLNGLVSGSGGLTKTGAGNLTLNGANAYLGGTQLNAGSLTLGNASALGSGALAVNGATTLDTNTALALANNTSLNAALTVGGSNDLSLNGVVDGSGSLTKAGGANLTLNGTNTYSGGTALNAGTLTVGSTTALGSGALTVGGTATLANSTPLVLANAVNLNGDLTVAGSNNLTLAGVLAGNAALIKNGAADLLLTGNNSFSGPLTVAAGSVTTTGNGALGATSSVTVGSGASLNLGGNANLNSLAGNGVVQVAGGNTLAVGGSNLDNSFGGALNGAGNLDKNGSGVLNLSGTNAISGAANVNGGTLNVTGSLASGTVAVNSGATLAGSGSLAGAVTVADGGHIGLATGSTLSVGSLVLGGNSNLDVGLGTPVLGGGTGLLNVGGNLTLDGNLNVTDIGGFGSGVYNLINYTGALTDNGLALGTLPGSVVPGDLQVQTAITNKVNLLVTAPNTTVQFWDGNSLIGNGAIDGGNGTWNAGNTNWTNVDGTLNQGWANSFAVFQGAAGNVTVDGTQNITGMQFVTDGYTLGSGTAGVLNLVNGGTGNTAVRVDPNATATLGVTLNGAGTLAKLDSGTLVLNGNNGYTGGTALNGGTLVVGNNSALGTGALTAAGGTTLDSNAAVSLANAAVLNGALAVAGSNALTLDGVVSGSGSLVKNGAAALTLNGVNSYSGGTGLNAGQLILGNNAALGSGALTVGGAAQLDGSTDLQLANTLNLGGALTLAGSHDLALNGVVSGSGGLVKNGNGDLLLTAANTYSGGTTLNGGSTTGNTTSLQGAIANNAALTFEQAIDGTYTGNLTGTGVLNKTGTGALLLSGNNTFTGNTNVNTGSLLVNGTLNSAAVQVASGATLGGSGTLGGAVNMADGSVLQAGAATPLSVGSLALSSGTTLDFALGAPGASSTAVNVAGNLTLDGTLNVSDTGGFGVGVYQLFRYGGSLTDNGLTFGTLPVALGNLSLQTALANQLNLVVQTTPGQIQFWNGGTTNPDGSITGGSGTWGPGTNWTDPTGTQGQASTNQFAVFGGQGGTVTVVGNQGFTGLQVLDAGYTLVAGAGGSLSPTNAADGSLAPVRVNSGVTAQIDAPLVGTGGINKLDAGTLLLTGANTYTGGTTVSGGTLAGTTTSLRGRILNNARLLFTQRTNGQFSGTLSGTGALIKQGAGALLLTGNQPFSGTVAVEEGVLQVGNAANPGAVLGGQVTVANGAGLTGNGSVGSLVNNGSVTPDGGKLTVAGNFTNASTGALNLVITPSTTGSLAVGGTANLGGTLNVVNLAPYAGATTYTLLTAGAVNGTFATTNLENLAFLTTALNYSPTQVALAVSRNDVSYASVAATGNQRGVAAALGTGTAVGGAAVQNALLNGDAAAARAAFDSLSGEIHASTASAMLEDSRYVRDAVNERLRQPGCYREDDPRNALAPSENHLSSAGCHGEMVGWMRVLGTWGHMGGDSNSAKLDRNLSGFLLGTDKQVDDAWRVGVAAGYTRSDLDAKRRNSSADVDSYHLMAYTAYQQEAFAARMGVAYSWHDVESKRNVAVGGEGQRLKADYKARSAQVFGEVGYTIQTPTVALEPFAGLAYVNYDSDTIKEKGGSAALRGDADQDITYSTLGVRIGQTITLGNGSKITPRGSIGWRHAFGDTKPDADLSFINGGGSFSTQGVPIAKDSAVVEAGLDYQISQNGRLGLGYSGQLSRNDKDHAVTVSFSLGF
>NZ_CP017296.1|WP_038449849.1|1358515_1360327_-|potassium-transporter-KefB
MPHEGNLLQAAVVFLFAAVLTVPLAKRLQLGAVLGYLFAGVIIGPSVLGLIGNPQSVAQFSELGVVLLLFIIGLELSPKRLWVMRKAVFGVGLAQVLLTGVVMGAVALWLFGQSWNSAIVLGLGLALSSTAFGLQSLAERKELNQPHGRLAFAILLFQDIAAIPLIAMVPLLAGSDHPTTEAQGLQHVLQILGSIAVVIIGGRYLLRPVFRIVAKTGLREVSTATALLVVIGTAWLMELVGVSMALGAFLAGLLLADSEYRHELESQIEPFKGLLLGLFFISVGMGANLSLLLSTPLVVIGLTLLLIGLKLPLLYAVGRMVGDLNRESALRLGVVLAAGGEFAFVVFKIGRDQGLFEPQLYDVLVLTITLSMAVTPLLLLVCPKLFKPKVKPVEVPEEYRAIESDAPRVVIAGMGRMGQIVARILRAQNISFIALDTSVETIELTRSFGGMPVFYGDPQRPEILHAAKVDQAEFFVIAMDDPEINIKTAELVRNLYPHMKIIARARNRQHVHRLVDLDASPVRETFYSSLEMSRRTLVGLGLSQAQADARINRFKTHDQQVLAAQHAVYDDAAKVMQTAQEARAELARLFEMDRIEEESSDKV
>NZ_CP017296.1|WP_014718107.1|1357888_1358443_-|hypothetical-protein
MATFTKTAMLLALALTAGSVFAAAKPTTQTISTLGGKFTFKLPKAYSADTLPSGTAQDGTADTQGTLYANSTTKSVVIVAETVRNDGATIQDNDPQFLDGAVADFVKDQSAALPDFKKLGEKKLTYKGLGLRQVDSSATQGGGKTLNSTFLGGSGNHLLVIQAISRADDVKGHAQLVKQITGGK
>NZ_CP017296.1|WP_038449847.1|1357038_1357755_+|phospholipase
MLKQLALALALVAGAAHADTGLHTDLPLSYLEQTQGDARNQPLVIFLHGFGSNEEDLFGIKDALPSTWTYLSVRAPLPVEPQGYRWFTKTDEPEYNGETDELFSSARLIKDFVLKATAKYHTQSDRVFLVGFSQGAIMSYEVALREPELVRGIAALSGSVLPVLRSALKPDAAMGKLAIFIGHGTLDQALPFSSATQANKVLAGLGLKPEFHEYPGMNHTISEAEIQDLKAWLEKSLK
>NZ_CP017296.1|WP_034133834.1|1356272_1357028_+|precorrin-6A-synthase-(deacetylating)
MKRILIIGIGAGNPDYITMQAVKALNRTDVFFLMDKGQSKDKLIDLRREICDTYITEPGYRFVEADCPERVRGEIDYTTAVQDLNRDKQQTFERMINEEMADGEVGAFLAWGDPALYDSTIRILQAILASGRCVFEFEVIPGITSVQALAAQHKVPLNRIGKSIEITTGRRLAAGQASDADTLVVMLDAEDSYRSVADQDLDIYWGAYLGTPDEILISGKVAQVAEEIERVRKAARLENGWIMDTYLLRKP
>NZ_CP017296.1|WP_019817302.1|1355263_1356214_+|hypothetical-protein
MIVNIARVWEDIAVRHKLFMLWKLQGLTDALKGFVGPAMTQHRLVEFLDKHREAICGCDPLALPGVIVAFSQTFARVVDIDYLNGFFKKYLCYKEFSAKERVVLLKRWDAYALCTSIRSKICPYCHITPIDTYVSPDGLKAYRPNIDHYYPQAEFPLLALTMGNFIPCCEKCNGPQMKGTTRFDLTPHLHPLVDAENISFRLAYKGGGLDLNKLRLQADSTSYEIEVMATNGTCLKVDNSIATFRLVPRYQVCVPDALLVAKRSRLGGRYRMLTKILTKLNFSDKHPLGFDETNDSYKNVIAGKLKLDIARQFKVI
>NZ_CP017296.1|WP_130175625.1|1353779_1355267_+|hypothetical-protein
MNKLIAVKTGTNKFEFENQESLKWNGFFDVDTIRLILGNNGSGKTALLCDMAAYISSPVSTPRRAVYDDRETSSEKLSDEELERIGVIYFSPVPYRRRLPFRNRFVDASPRFGKVENSARAEQFYQVASDLELNASLRAEVCYEFELFKTVLAPALVVMSNLAGFQTAHKPVITFLSEYAKIQKKRQFVSSDYYENERLNIQIERLLDTCVLRLERFALSKLPRGKSNKLVMLAALTSVAKKIPDHDRIGRFFFNFFELASDGRYDEDKEVFDLLMMTYRATLNFIKVGAKDDIRKHPRSYSFAIGSAEEIKQIKMSTAAVEVRWTDQSSGVRALVDQFFLLRQGFVTMAGKKLKHVMVLIDEGDAYLHLEWQRRYISLLNKFLAGVKAEFDMKIVQVVVATHSPVITGDFPACMVTNLDDRVTPQNTFAAPLEDIILNSFGTAAIGEFAAEKINALHQRLEQGISSALDKLLLESIGDIGIKEALYRAPERRYS
>NZ_CP017296.1|WP_038449853.1|1375475_1376906_-|PLP-dependent-aminotransferase-family-protein
MFVSAIAFVEGTPKVQQIVEAFSHAIENGEWAPGSKLPSVRELTQILGVSKFTLNEALDRLRGRHLLTSSQGRGYFVAMDSTRPASVTWVDLLPQDLLSVLRRPLATASGELRPGGGHLPEDWLNGEAIRQAMRSVVRAPSLRIAGLGTPAGLLPLRQALQQKLHGEGMSVPVEQIITTPNTVQGLDMLMRLLARPGDTVLLDAPCYFNFHANLALHGVKVVTIERRPDGFDFAALEQLLAEHRPSLYLTTSVLHNPTGHSFSPSQAFRLLQLTQHYHCHIVEDDLYGDLHPNPPPRLAAVAGLEQVTYLSGFSKSLSANTRVSYVVAAPQLAANLTNMKLMSGGVTSELFEQIVYRMLSEGSYAKHRKRMVQRLMEAGGRVEQWLKRCGCELPMAYEGGMFIWARLPPGVNGELLAQQALKRSMVLAPGALFGYDPAHRDSMRFNVAHSDEPRVQRVFEALLLHGVAHKSKSGPT
>NZ_CP017296.1|WP_014718115.1|1377064_1377247_+|rubredoxin
MKTYMCAPCGFMYVEELGIPEDGIPAGTPWEEVPEDWTCPDCGVTKADFMAINLPERQFA
>NZ_CP017296.1|WP_014718116.1|1377274_1378144_+|sugar-phosphate-isomerase/epimerase
MESKLINATVPFCTGVAHQKYLGAEKGLQTAIEGDCTHWYIDGSLFGEMVDDWTEARIESLQAQITATGVKPVFHGNFKAPLGSDVEAFRSAAVEYVKKEIDIASRLGAPLIIHGGCIVEPKMVLMAKKVALEHYLKSVQELARYAEAKGTDIYLENLSNYVNYRPFHYIFTHEAEYAFVFERLQAHSNVYFFLDAGHANIENGLPAEVVRKYHHLIKGISFSNNNGVQDQHFGIHDGNCDYADVVQAIVETNWKGLVAFETRNQTAKAALADLAVMYRESLTTEIAVA
>NZ_CP017296.1|WP_014718117.1|1378213_1378846_+|LysE-family-translocator
MTSALTLSSFLYFLLFCATMTFSPGPMTLLLLSLGLKDGLRSSIPAQIGASVSYLISILIFAVGFSELIKGNLAITQTIQFVGVAYILYLAYKQWTSSGVSINNAGAVEGSRSLFGKGLLTGFSNPKTIIMFSAVFPQFAGAGEHSSAADIAILGLTFLLLQFASGCLYCYFGQRIKHVLENPKRRVLLQRVTAVLLLGVALMLARGFSH
>NZ_CP017296.1|WP_038449855.1|1378925_1379984_+|diguanylate-cyclase
MPAVGGKGLPLALRLYKSRLLGLTLGFVCVAFGMYPLNPSLWVWAWMLVNAFAWPHLAFQCSLRSANTLRSERRSLLFDSFCGGFWVGAMHFNPLPSVTTLSMMSMNNVAIGGPRFLFAGWVAQALGLGTALLLFTPGFVALSTQAQLYACLPILMLYPLALGWICYRQAVTLARHKRELLALSRTDSLSGLLNHGAWKDHLDLEFQRCRRGPAGAAIALIDIDHFKTINDTYGHVTGDIVLRQLSKVLRQNLRTTDLAGRYGGDEFCVILPDMPLNRATEVMEALRGRFNALAYAQDPTLRVSLSIGLAPYQPSHADSISWLNDADQALYEAKSSGRNRVSSVQGSWLRSV
>NZ_CP017296.1|WP_020303175.1|1380032_1381262_+|M20/M25/M40-family-metallo-hydrolase
MFFTFPRTLLAATLALSFSLPAYSAEPHKQIQQQAEQYKAQALKLLERLVNIDSGSGYEPGLTQVRDIAVDELKQLGFTIELVPDKAANNSHVVATLKGTGKAKILLMAHMDTVFKEGSAAERPFHIKDGRAYGPGVMDDKGGIVAGIYALKVLKSQGFKDYAQITFLLDASEETGSDAASELIRNTAKGHDVTLNLEPGRPADGLVVWRKGSATAVVEVKGKAAHAGVAPELGRNAAMEAAHQILQLGKLGDEDKKTTINFTVLKAGDRTNVIPDQATAKADVRAALPEEFDRIEKDLARVSANKLIPETEVNTSLQRGLPPMPQTAESDKLVAMAQGIYGELGRKLTIEGSGGAADASLSAGVGTPTLDGFGIVGGNIHTAEEYAEVESVVPRVYLLSRMIMELSKR
>NZ_CP017296.1|WP_032903701.1|1381453_1381813_-|hypothetical-protein
MKSQPQLSILKGLLFTYCIENTRDADREELITSINVNHHEELTWLFNQLTKPEFIKYKQDEREWHINTLQHFLSTDENFESVFYLFDTYFEDEIVDNRAFMKTLLECLIRYHAQATADE
>NZ_CP017296.1|WP_014718120.1|1382192_1382609_-|hypothetical-protein
MLKHPFLDIPYAPKLRHLLSPFDIYDREETLGEEFARYDINLDTDRRRLIEKYIIEKSSDLSYRHRKVLCDKLGAALSDETFDFSHLLRQAPGYYCTLPWGWSEMDNPKGFFEEIYRLTNEWWKEDLQKASLEDPATW
>NZ_CP017296.1|WP_080643481.1|1382602_1382887_-|hypothetical-protein
MQLSTQFKSHRAQLAVLNEVTTRAERNLPPFTGEDYYGNPVVRIEMQGCGRGYIPNPSDRNNPILDENMDAAIAKFDRETKELYTVFPVSNDQC
>NZ_CP017296.1|WP_014718121.1|1382936_1383248_-|hypothetical-protein
MNNQLTELQQFFGAYFHQDWVDEHATADEVIDAFLLVSSTDVIITVKEEILELLKYYTNESNLLENLLHKQYCYYYYPHEWASGPLWLSHIVRKIENHLLLKQ

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Crispr_ID: NZ_CP017296_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_6

1451160-1451260

Orphan

Consensus_repeat	Method
CCAATGTGGGAGCTGGCTTGCCTGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_6

>merge|NZ_CP017296|6|1451160-1451260|CRISPRCasFinder
CCAATGTGGGAGCTGGCTTGCCTGCGATGACGGCCTGACAGCCGACATTTACCTACCAGACACCCCCGCAATCCAACTGTGGGAGCTGGCTTGCCTGCGAT

>NZ_CP017296|6|6|1451160-1451260|CRISPRCasFinder
CCAATGTGGGAGCTGGCTTGCCTGCGAT	GACGGCCTGACAGCCGACATTTACCTACCAGACACCCCCGCAATC
CAACTGTGGGAGCTGGCTTGCCTGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_038449901.1\|1453072_1453858_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP017296.1\|WP_038449890.1\|1437291_1439802_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP017296.1\|WP_038449907.1\|1460285_1463357_+\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
NZ_CP017296.1\|WP_014718178.1\|1463458_1465171_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP017296.1\|WP_038449897.1\|1447805_1449389_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238793
NZ_CP017296.1\|WP_038449905.1\|1458834_1460250_+\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NZ_CP017296.1\|WP_034125680.1\|1456423_1457011_+\|GDP-mannose-pyrophosphatase	unknown	unknown	gnl\|CDD\|184971
NZ_CP017296.1\|WP_020302077.1\|1453978_1455139_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP017296.1\|WP_014718166.1\|1442901_1443657_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP017296.1\|WP_038449895.1\|1442458_1442905_+\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP017296.1\|WP_003191880.1\|1450210_1451116_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP017296.1\|WP_038449894.1\|1441750_1442443_+\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP017296.1\|WP_038449892.1\|1439837_1441703_+\|phytase	unknown	unknown	gnl\|CDD\|226698
NZ_CP017296.1\|WP_020301598.1\|1457595_1458213_+\|repressor-LexA	unknown	unknown	gnl\|CDD\|171489
NZ_CP017296.1\|WP_014718168.1\|1446748_1447723_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270276
NZ_CP017296.1\|WP_003191873.1\|1458212_1458827_+\|translesion-DNA-synthesis-associated-protein-ImuA	unknown	unknown	gnl\|CDD\|380271
NZ_CP017296.1\|WP_014718167.1\|1445397_1446738_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP017296.1\|WP_032903886.1\|1455331_1456258_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP017296.1\|WP_081339099.1\|1451452_1452754_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP017296.1\|WP_093114179.1\|1449385_1450003_-\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|227840

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_038449901.1\|1453072_1453858_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.74061e-75
NZ_CP017296.1\|WP_038449890.1\|1437291_1439802_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP017296.1\|WP_038449907.1\|1460285_1463357_+\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP017296.1\|WP_014718178.1\|1463458_1465171_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.60742e-119
NZ_CP017296.1\|WP_038449897.1\|1447805_1449389_-\|sulfurtransferase	gnl\|CDD\|238793	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.	6.93272e-72
NZ_CP017296.1\|WP_038449905.1\|1458834_1460250_+\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	2.11528e-67
NZ_CP017296.1\|WP_034125680.1\|1456423_1457011_+\|GDP-mannose-pyrophosphatase	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	8.68439e-74
NZ_CP017296.1\|WP_020302077.1\|1453978_1455139_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	5.78239e-175
NZ_CP017296.1\|WP_014718166.1\|1442901_1443657_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	7.53781e-14
NZ_CP017296.1\|WP_038449895.1\|1442458_1442905_+\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	9.70676e-48
NZ_CP017296.1\|WP_003191880.1\|1450210_1451116_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.99946e-45
NZ_CP017296.1\|WP_038449894.1\|1441750_1442443_+\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	2.04302e-81
NZ_CP017296.1\|WP_038449892.1\|1439837_1441703_+\|phytase	gnl\|CDD\|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	3.66968e-94
NZ_CP017296.1\|WP_020301598.1\|1457595_1458213_+\|repressor-LexA	gnl\|CDD\|171489	PRK12423, PRK12423, LexA repressor; Provisional.	5.3144e-130
NZ_CP017296.1\|WP_014718168.1\|1446748_1447723_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270276	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.77178e-95
NZ_CP017296.1\|WP_003191873.1\|1458212_1458827_+\|translesion-DNA-synthesis-associated-protein-ImuA	gnl\|CDD\|380271	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA. A three-gene cassette encoding ImuA, ImuB, and ImuC (""inducible mutagenesis"") is induced by DNA damage, is capable of DNA synthesis across DNA damage lesions, and consequently is associated with mutagenesis. This family, ImuA (previously misnamed SulA in Pseudomonas putida) shows some homology to SulA itself and to RecA. ImuB resembles Y-family polymerases but may be catalytically inactive. ImuC is a C-family polymerase, and catalytically active.	6.17104e-80
NZ_CP017296.1\|WP_014718167.1\|1445397_1446738_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP017296.1\|WP_032903886.1\|1455331_1456258_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.21371e-19
NZ_CP017296.1\|WP_081339099.1\|1451452_1452754_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.90402e-07
NZ_CP017296.1\|WP_093114179.1\|1449385_1450003_-\|cysteine-dioxygenase	gnl\|CDD\|227840	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only].	4.4212e-59

>NZ_CP017296.1|WP_003191880.1|1450210_1451116_+|LysR-family-transcriptional-regulator
MKIDDIDAFVEVIRCQSISHAAASLQLTQPAITRRVQNFEQALGVELFDRNTKPLKPTLIGTRVYEQCRLILREMDALRELVATDAPPTGVLRLGVPQTIGDVVLLDALKHLRSEYADLRAQVATGWGSQLVGKIERGELDAAVALFPAGKIFPDNLVGESIGKMELVVVCAKAQLPKKPCKLADVYQSGWILNPDGCGFRAGLQRTLSDQGLALRVNLETFGTELQLGLVADGLGLGLVPRPLLERSAHREQLAAMPLKDFKPVMDLWLIYPHFLGNLQGPVDAFGQWVADALHKIRSAA
>NZ_CP017296.1|WP_093114179.1|1449385_1450003_-|cysteine-dioxygenase
MVMTQARHPERLRAFIGALAELIDGNPREGDLLHRGGKLLAQLVSHDDWLPDEFAQPDPERYQQFLLHADSRQRFSVVSFVWGPGQRTPIHDHRVWGLIGMLRGAEVSQGFARAPGGSLVALGEPVQLLPGQVEAVSPKVGDIHQVSNAHGDQVSISIHVYGANIGAVRRAVYQPDGSEKLFISGYSNAYLPNIWDLSKEKSPAL
>NZ_CP017296.1|WP_038449897.1|1447805_1449389_-|sulfurtransferase
MTTLSTRSFAQIRQALLAREEVALIDVREEAPFAEAHPLFAANIPLSKLELEVYARIPRRDTQVTLYDNGEGLAQRAAEHLVALGYTQVSLLEDGLDGWRRAGGELFIDVNVPSKAFGELVENQRHTPSLAAEEVQALLDSQADVVVLDARRFDEYQTMSIPTGISVPGAELVLRARELAPDPATRIIVNCAGRTRSIIGTQSLINAGLPNPVAALRNGTIGWTLAGQTLDHGQARRFAPTSENHRQLAAQKARGVADKAGVKRATLNDLHRWQQDATRTTYLFDVRTVEEFEAGHLPGARATPGGQLVQETDHVASVRGARLVLVDDDGVRANMSASWLAQLGWQVSVLDDLQATHFSERGAWVAPVPPPLQAELISPHTLADWLSHGDTQVLDFTASANYVKRHIPGAWWVLRAQLPEALSKVPSAQRYVLTCGSSQLARLAVPEVEALTGKPVFLLQDGTAGWIQAQLPLESGESHLASPRIDRYRRPYEGTDNPREAMQAYLDWEFGLVEQLARDGTHGFYVI
>NZ_CP017296.1|WP_014718168.1|1446748_1447723_-|ABC-transporter-substrate-binding-protein
MLYALPFKRLLWGAALAFGLLSTVQAGDLQPLRVANQKSTIKALLEASGESQNVPYEIKWSEFPSASPLGEALNAGAVDVGALGDAPYVFALGAGASIKVISIIHAEGRNTTALLVPKDSPIKTAADLKGKKIVTGRGSIGHYLAIKALNDAGLTTQDVQFIFLLPAESRLVLDNGTADAWATWDPYTTVVTSQSNARVLVSGKHLLSNHLYFAATGQAIADKRVQLDDFVARIDRAYAWANTHPEQYAAAQAKITGLPLAVHIEVAKDTHLSPVTIDDTVIHGLQATADTYVKEGLLSKHIDVSQGFDSSFNAKRIPLEQASR
>NZ_CP017296.1|WP_014718167.1|1445397_1446738_-|LLM-class-flavin-dependent-oxidoreductase
MSKPRQLKLGAMVHGVGHGWGEWRHPQAQPDASTNFGFYKQQTALAEAARFDFVFIADSLHIHPKSSPHYLNRFEPLTILSALAALTTHIGLVATVTVSYTEPYQVARQFASLDHISGGRAGWNVVTSWLSGTADNFGKAEHPPHAVRYRIAKEHLNVVKGLWDSWEDDAFAYNKHSGEFFTPGKLHALNHKGEFFSVKGPLNIARSRQGQPVIFQAGTSQDGRNFAAENADAIFVHVETIDEAKAYSADLKRRAKGFGRDPDSLSILPGIRPIVGRDAAEVESRYQQAVALVTVEDAIVALGRPFNDHDFSQYPLDAPFPELGDLGANSQKGGSERIKQLARDEGLTLREVALRFSRPLRDFVGTPQQVADAIQTWFESGASDGFIINSVLPDGLQYFTEWVVPVLQQRGLFRTEYSGHTLRDNLGLEVPANRYSVIEPHEKALA
>NZ_CP017296.1|WP_014718166.1|1442901_1443657_+|energy-transducer-TonB
MTVMIMHSPALALAPDSDGFWRKSLAASLAVALHGAVAVALMLGWSTERPGVPAPRVMHTQWVVLPAPAPAPTPEPVAAALPEPVAIPVPTKPTVDPQVQAQKLEKAALARKRVEEKKLEQQQQRMATEQRNQALEQQRLSQARAASEKARAAVPVPTPAFDSRQYQPLSKAAPDYPERALDKNIEGDCSVEYTVNTQGHVENPKVLDGCHPLFIRPSLAAANTFRYQPRIVDGKAVAVPAVRNTFHYRIK
>NZ_CP017296.1|WP_038449895.1|1442458_1442905_+|protein-TolR
MLIRPQRKHGPKAEMNVVPYIDVMLVLLVIFMVTAPMLTQGVKIELPKVAAEALATDTRQQILTLSVKADGGYYWNLGGELDTRQQTDSAVTLEEMSAKVIQVVAARSDTQVYIRADDNAGYGRVVAAMAVLQKGGISNLGLVTEAPQ
>NZ_CP017296.1|WP_038449894.1|1441750_1442443_+|protein-TolQ
MHATMEHMTIWSLISDASLLVKAVMVTLLLASLLSWYLIIQRSSVLRGLERQLEGFLARFRVASDLQPLYRETVQAGEGGVAPIFIAGMQEYQHLHHHDPAVLEGVERALQVAITEQELELEKGLQFLATVGSVSPYIGLFGTVWGIMNSFLGLSQVQQATLSTVAPGIAEALIATAIGLFAAIPAVVAYNRFAARSQTLLTRYYAFGNELQVHLHRTLRGTSNNLAVAA
>NZ_CP017296.1|WP_038449892.1|1439837_1441703_+|phytase
MRISKLCLLVVLVSSANAFATDLPLTPWAPSLNAQAVAFLPGGTQRVAASARDGLLLLDDNGVELARFKGRFSSLDTRTAGTQSLIASLDNDRQQALLIGLDGAGKTWGTPLYLPPRDFAVNSLCLYRDATANLFVFLVGEEGKGEQWLVGNGATLLAQAQRVRSLPLPPSAQYCQVDDATERLVVNEQNVGWWAYPAHPEAEVKRTPVALFDDPQREAGVMALVPGGMLALDPKTAQLYLFQQVGERWVGQSSLALPGLKEPEQLAIQGRQVLVRDDNSGQLYQGRLDWQATPVPVAPILAQVAALRQTEPVGRQGDAADDPAIWIHPETPAKSRVLGTNKKQGLLAYDLDGKLLQELAVGRLNNVDLRPGFKLGTHTVDLAVASNRDRNSLSLFSIDRQSGELREAGEVSTPLKDIYGICLYQPASGELYAFANDKDGTFLQYRLSAPAGRVQGELVRQFKVDSQPEGCVADDQRQRLFIGEEDVGVWAMDARADQPAMLTSVINVGPQLHADVEGLALYQSPARDYLVISSQGNDSYLVLDAEPPFAVRGALRVGLNAAAGIDGASETDGLEVTAVNLGGPWSQGMLVVQDGRKRMPEQAQNFKFVPWAEVSRALKLP
>NZ_CP017296.1|WP_038449890.1|1437291_1439802_+|TonB-dependent-receptor
MYKRTGLVSFTLTALALAIACERLNAAEAATEHVDVVGQAAAIDSALKEQRSSDSIKSVVHADGVAQLPDENVAEAVQRLPGISVERDQGEGRFVSVRGLGPDLNSVTINGTLVPSPESERRAVALDVLPSELVQSLSVIKTLTPDMDANSLGGTVDVKSLSAFDHKGLFYTGSTEASYDKNTHQTSPKFSGAASNRFSLGDGIDNFGVAAALSWQKRDFGSDNVETGGAWDFTNGARLNEFEQRDYDISRERAGGGLNFDYKPDDLSSYYLRTLYSRYKDTETRNAASLEFADPQAPGELGEAEGKRKLKNREETQQIQSYVLGGERLLGLWTLSGQAGYSRSSEDSPGHIAGATFDGGDFAHSGFYDKAKPRPIVGSGFYDPANFSLDKVDWEKQHTQDTEKNLRLDLARDYDLRGYASQFKFGGKVSRRHKDNDLEAWVYKDLDEQGLSDEQLNLTQFQKGSVDYRLGRFGPGISASNIRQLIGGLNRDDFYDPTESTVNDFTIREDINAGYLMNTVDIDDWRFIAGMRYEGTEFEAKGTGATDGQFSATETKRRYHHWLPGLHARYQIDKNTQVRAAWTKSVVRPTFGQLAPGFVIDDDEATFGNPDLKPLESSNLDLGIEHFMGRAGTVSAFVFYKDIQNFVYNTDVAGTGAWANFAEAHTFANGDSAKLYGLELAYSQKFDWLPAPWNGLMIGANSTFSRSSADIEGFDSASGRNRKRNISLPNQSDTVGNLMLGWEDDTLSLRLSANYKSAYLYELASINDKAHDLHVDAQTFVDFSARYSLTKNLQVSFEAQNLTDESYFVYTGHRSYNGQYEEYGPTYKLGLTFTHF
>NZ_CP017296.1|WP_081339099.1|1451452_1452754_+|IS4-family-transposase
MAKLALQQAIAPEWIDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPSLHAAARQLEDLPVSLAALYDKISRTEPALLRALITGCAQRLAPTIRELGCTAMLPGWQVRVVDGNHLASTEKRLGALRNERGAARPGFSVVAYDPDLDQVVDLQACEDAYASERVCVLPLLANAEPGQVWLADRLYCTLPVMEACEQVQTCFVIRQQAKHPRLIQEGEWQEPVPVETGTVREQIIQVKGGYQCRRVELTLHSPTDSGDSSLMFWSNLPESVSAQQIAELYRRRWSIEGMFQRLEAILESEIETLGSPKAALLGFATAVLAYNVLAVLKRSVEQAHRDTQPEGWEASIYHLAVQVRSGYEGMQIALPSEHLPVIPLEKLAQHLLALARNIQPKQVAKSPRGPKVPKPKTWVKGTAVNAHVSTDRIIKAAKTKRP
>NZ_CP017296.1|WP_038449901.1|1453072_1453858_-|DeoR/GlpR-transcriptional-regulator
MHNTHQAIDLPSLRKQKILLLLERDGKVTASELVEHFAVSQDTIRRDLGELAAAGLLQRVHGGALPRPKDTGKDFFTRVGETNEVKRHLARVAAERVEDGQIVLFDSGSTTLQIAQCLPHALHLTVVTPSPMIAIALADHPHIKVILAGGQLNPATLSTGGHEAVRLIQSVKADLLFTGVCALHPQVGITSLHFGEVAVKQALLDSASHVIAVTTSDKLGAVEPFVVAPCSRIHTLITEWDAPDVQAYEQLGLQVQRVDVQ
>NZ_CP017296.1|WP_020302077.1|1453978_1455139_+|alpha-hydroxy-acid-oxidizing-protein
MPLITTIEDLRKLAQKRVPRMFYDYADSGSWTESTYRANETDFARIKFRQRVARNIDERSIRASMIGQDMAMPVALAPTGLAGMQHADGEILTARAAAAFGLRYTLSTMSICSLEDIAEHVGQPFWFQLYVMRDRGFIEQLIERAKAAGVDALVLTLDLQILGQRHKDLINGLSAPPKLTLPNILNMMTKPRWVMGMLGTQRRGFGNIVGHVKGVADMSSLSSWTAQQFDPRLSWDDVAWIKRCWGGKLIIKGILDVEDARLAADCGADALVVSNHGGRQLDGAPSSISQLPAIVEAVGNRIEVWLDGGIRSGQDVLKAMALGAKGTMIGRPHLYGLGAMGEAGVTKALDIIARELDVSMALCGYKDIREVNREILLPGTFPGSTA
>NZ_CP017296.1|WP_032903886.1|1455331_1456258_-|alpha/beta-hydrolase
MSSASMPRRGLRWFVWLCMAVLIVGLPVGCAVLQHKERELVFRIEPGTAGWYTGLPKAVQEFELKPASFKAGQNIHGWWYPAANKDAPAILYLHGVRWNLTGQLFRIEQLHALGFSVLAIDYRGFGQSQGDLPSEATVYEDARIAWERFQTLQPDPGKRLIYGHSLGGAVAIDLAAELGKQVPLPVRGLVIESTFTSLADVATAVANTSLPVRWLLSQKFDSIDKIADIHMPLLVVHGLDDRYVPPRFSQQLFEAAQQPKHLLLVPGASHNNSMNLAGRSYGQALENLMRTKMPAQVVTHSTGRDNAS
>NZ_CP017296.1|WP_034125680.1|1456423_1457011_+|GDP-mannose-pyrophosphatase
MNNSPVRITAEETLSDNWYLLKKYSFDLRRRDGSWQAQTREVYDRGNGATILLYNREQRTVLLIRQFRMPTFVNDYPGYLIEAAAGLLDNASAEERIRLEAEEETGYRVGHVEKIYAAFMSPGSVTERIHFFIGEYQPGDRVGAGGGLEEEGEDIEVLELGFEQALAMVQSGEIVDGKTIMLLQHLELRMLKEGW
>NZ_CP017296.1|WP_020301598.1|1457595_1458213_+|repressor-LexA
MYSMTNLTPRRTAILTFIRERIAQQGQPPSLAEIAEAFGFASRSVARKHVVALTEAGFIEVNPNQARGIRLLNQPARPEWLDVPVLGRVAAGRPIGADAEVHSRLQLDPATFAKTPDYLLRVQGDSMIEDGILDGDLVGVRRTAEALNGQIVVARLDGDVTIKRFERHGDRVRLLPRNPAYQPIVVGPEQDLAIEGVFCGLVRQG
>NZ_CP017296.1|WP_003191873.1|1458212_1458827_+|translesion-DNA-synthesis-associated-protein-ImuA
MGAVVALDSLFNGGRVWKGRPAAPPASVHPTGLAALDAVLPSGGWPESALSEILMAQDGVGELQLVLPTLARLSALGERIVLVAPPYTPYPHAWQNAGVDVRQLSIIRAEERDALWAVEQCLRSGSCGAVLCWPRKADDRALRRLQVAAETGQTLAFAWRSLSEAINASPAALRLAVEARPAQVRVLKCRGGLAHPAPIALAGH
>NZ_CP017296.1|WP_038449905.1|1458834_1460250_+|DNA-polymerase-Y-family-protein
MRWVCIVFPQLALDGAQRVHPEPEQPLALLAGTPQRRVLQTVNAAARALGLRPGQSLTAAHALVKHFACVEYDPLEIERLQQFLAAWAYRFSSQVSLYYPRALLFEIESSLGLFGPWPHLEARLRKELTELGFRHRIVAAPNPAAARILANGYDGLAVADDRALMQALASLPIDRAGLEPQAATALSRMGLRSLAQVQALPRHTLARRFDASLLKHLDALSGQRPLALEFYQPPDQFDARIELNFDVQSHQALLFPLRRLTGDLSAFLCGRDSGVQRFDLHLEHAQAHDSVIKVGLLSAEREPSMLFELARGRLEQVQVTAPVRGVRLVAEDLPVFVPQRQDLFDDRPQQTLPWEQLRERLRARLGDEAVQGLRFQADHRPECAWQATTDHQACPSLNKVRRPGWLLPQPTLLAEHGVQILMGPERIESGWWDGADVRRDYYLVQTRAGQQGWAYRTVGQGDGLWLQGWFA
>NZ_CP017296.1|WP_038449907.1|1460285_1463357_+|error-prone-DNA-polymerase
MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVDLPLIIGSEMHIENGPKLVLLVESLSGYQHLCRLITLARRRAEKGRYRLLQEDFEQPLPGLLALWVAQDSDTQASLDWLRRTFDQRLWLAVHLHCGQDDARHLQQRLQLAHSLQIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQALLDETLAIARRCTFDLGQLRYHYPRELVPAGHDAQSWLRTLTEEGIAQRWPEGIDDKTLQQIHRELQLISELGYESYFLTVHDIVRFARSRSILCQGRGSAANSAVCFALGITEINPSLTNLLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHATGAVRDVAKALGLPPDQINALADCCGRWSDEAPPLERLRESGFDPDSPLLRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRHRDLSLATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRRNNEEPTTYPSPQLKAVLERTLGIPLFQEQVMQIAMVAADYSPGEADQLRRSMAAWKRHGGLEPHQQRLRTGMLKNGYTEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWECSLEPIDGQQPAIRLGLRMISGFREEDGRRIEAARQQRRFNDIADLDARAGLDTRAQALLADAGALRALAGNRHQARWDVAGVHQQLGLFAGLPSPDETRVALPEPTVGEDLHADYATLGTTLGPHPLALLRAELRRRRCRSSQELLAVEHGRNVSIAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLDGMVVRSRDFH
>NZ_CP017296.1|WP_014718178.1|1463458_1465171_+|response-regulator
MQFLSNPHGCEGWAGEMAQRIRTFDWSSTDLGPLDQWSTSLACTVQMMLASPVPMVMLWGRAGYMIYNDSYSAFAGGRHPYLLGTPVELGWPEVAEFNRHVVDTCLAGGTLSFNNKELVLSRHSQPESVWLDLYYSPVAGDNQQPAGVLAIVVETTELVKSERVRQELTHNLEQRVAAEVQARSAAEDQLRQSQKLEAIGGLTGGVAHDFNNLLQVIAGNLHLLARHEPDNPQVQRRVTAAIAAVERGAKLSSQLLAFARRQPLSPAVYNPQRIYAGLGELLQRALGETIHIDVQLPQDSWCINVDRNQLENALLNLAINARDAMQGEGVIRITGENVILNPDDCIGKSIKPGEYVRLAVADTGVGMSEATLKRAFEPFFTTKREGHGTGLGLSMVFGFVRQSGGHVDMWSEEGKGSVVQMYFPHCLEPECFDDYSDADLQGGGQETILVVEDNEGVRLTVVELLQQSGYTVLIAEDGDRAMQVLQRGVSPDLIFTDVVMPGRVKSTDLATWARAQNPPVPVLFTSGHTRDILSSNHLLSADIHLLSKPYSPDALTQRVRRVLSARQGCP

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Crispr_ID: NZ_CP017296_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_7

2192777-2192885

Orphan

Consensus_repeat	Method
CTGTGAGGCCGCCTTCGCAGGCAAGCCAGCTCCCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_7

>merge|NZ_CP017296|7|2192777-2192885|CRISPRCasFinder
CTGTGAGGCCGCCTTCGCAGGCAAGCCAGCTCCCACAATTTGATCGCGGGGCGTCAGGTAGGTAGTCGTCGGCTGTGAGGCCGCCTTCGCAGGCAAGCCGGCTCCCACA

>NZ_CP017296|7|7|2192777-2192885|CRISPRCasFinder
CTGTGAGGCCGCCTTCGCAGGCAAGCCAGCTCCCACA	ATTTGATCGCGGGGCGTCAGGTAGGTAGTCGTCGG
CTGTGAGGCCGCCTTCGCAGGCAAGCCGGCTCCCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_014718712.1\|2195027_2195702_+\|DNA-directed-RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|227648
NZ_CP017296.1\|WP_038450367.1\|2199029_2202128_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP017296.1\|WP_014718709.1\|2192914_2193700_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP017296.1\|WP_038450357.1\|2181709_2182813_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP017296.1\|WP_020301116.1\|2185942_2186881_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP017296.1\|WP_038450369.1\|2202963_2203803_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP017296.1\|WP_003190934.1\|2197007_2197709_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP017296.1\|WP_005788583.1\|2180855_2181686_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP017296.1\|WP_014718711.1\|2194500_2195031_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171568
NZ_CP017296.1\|WP_038450359.1\|2182831_2184313_+\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP017296.1\|WP_019816859.1\|2190529_2191300_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP017296.1\|WP_032901628.1\|2184448_2185930_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP017296.1\|WP_014718716.1\|2202249_2202891_+\|DUF1345-domain-containing-protein	unknown	unknown	gnl\|CDD\|377769
NZ_CP017296.1\|WP_019816858.1\|2191337_2192462_-\|dimethyl-sulfone-monooxygenase-SfnG	unknown	unknown	gnl\|CDD\|274923
NZ_CP017296.1\|WP_014718710.1\|2193892_2194414_+\|DUF3455-domain-containing-protein	unknown	unknown	gnl\|CDD\|314761
NZ_CP017296.1\|WP_014718706.1\|2189690_2189960_-\|DUF1652-domain-containing-protein	unknown	unknown	gnl\|CDD\|311697
NZ_CP017296.1\|WP_003190946.1\|2190329_2190530_+\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP017296.1\|WP_038450364.1\|2195702_2197004_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP017296.1\|WP_038450366.1\|2197880_2199023_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
NZ_CP017296.1\|WP_038450362.1\|2187025_2189620_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_014718712.1\|2195027_2195702_+\|DNA-directed-RNA-polymerase-sigma-70-factor	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	7.6192e-39
NZ_CP017296.1\|WP_038450367.1\|2199029_2202128_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP017296.1\|WP_014718709.1\|2192914_2193700_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	5.36268e-29
NZ_CP017296.1\|WP_038450357.1\|2181709_2182813_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP017296.1\|WP_020301116.1\|2185942_2186881_+\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	1.80909e-97
NZ_CP017296.1\|WP_038450369.1\|2202963_2203803_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.39652e-25
NZ_CP017296.1\|WP_003190934.1\|2197007_2197709_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.49664e-87
NZ_CP017296.1\|WP_005788583.1\|2180855_2181686_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72072e-73
NZ_CP017296.1\|WP_014718711.1\|2194500_2195031_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171568	PRK12537, PRK12537, RNA polymerase sigma factor; Provisional.	3.5028e-97
NZ_CP017296.1\|WP_038450359.1\|2182831_2184313_+\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	0
NZ_CP017296.1\|WP_019816859.1\|2190529_2191300_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	9.06008e-143
NZ_CP017296.1\|WP_032901628.1\|2184448_2185930_+\|xylulokinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP017296.1\|WP_014718716.1\|2202249_2202891_+\|DUF1345-domain-containing-protein	gnl\|CDD\|377769	pfam07077, DUF1345, Protein of unknown function (DUF1345). This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.	9.71311e-66
NZ_CP017296.1\|WP_019816858.1\|2191337_2192462_-\|dimethyl-sulfone-monooxygenase-SfnG	gnl\|CDD\|274923	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG. This family of FMNH2-dependent members of the luciferase-like monooxygenase (LLM) family includes SfnG, a monooxygenase that converts dimethylsulphone (DMSO2) to methanesulphonate. This step can be followed immediately by methanesulfonate sulfonatase (an alkanesulfonate monooxygenase - see TIGR03565) for the FMNH2-dependent conversion an inorganic form. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP017296.1\|WP_014718710.1\|2193892_2194414_+\|DUF3455-domain-containing-protein	gnl\|CDD\|314761	pfam11937, DUF3455, Protein of unknown function (DUF3455). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 174 to 251 amino acids in length.	7.40032e-40
NZ_CP017296.1\|WP_014718706.1\|2189690_2189960_-\|DUF1652-domain-containing-protein	gnl\|CDD\|311697	pfam07865, DUF1652, Protein of unknown function (DUF1652). This is a family containing hypothetical bacterial proteins.	3.28539e-16
NZ_CP017296.1\|WP_003190946.1\|2190329_2190530_+\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	1.14349e-26
NZ_CP017296.1\|WP_038450364.1\|2195702_2197004_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	7.5847e-79
NZ_CP017296.1\|WP_038450366.1\|2197880_2199023_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	1.4816e-108
NZ_CP017296.1\|WP_038450362.1\|2187025_2189620_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	5.04356e-41

>NZ_CP017296.1|WP_019816858.1|2191337_2192462_-|dimethyl-sulfone-monooxygenase-SfnG
MSQQAVKFAYWVPNVSGGLVVSKIEQRTHWGIEYNRKLAQLAEAAGFEYGLTQIRFTAGYGAENQHESVAFSHALLAATTTLKVIAAILPGPWQPALAAKQLATIDQLTNGRIAVNIVSGWFKGEFQAIGEHWLEHDERYRRSEEFIRALKGIWTQDDFTFKGDFYRFNQYTLKPKPLGQPEIFQGGSSRAARDMAARVSDWYFTNGNTPEGVKAQVDDIRAKAAANHHSVKVGVNAFVIARDTEEEARAVLAQIIDQADPEAVNAFGDAARQAGKASPEGEGNWAKSSFEDLVQYNDGFKTNLIGTPQQIAERIVALKAVGVDLVLAGFLHFQEEVEYFGKRVLPLVRELEAKADAGASLLAKNVNEKVASLV
>NZ_CP017296.1|WP_019816859.1|2190529_2191300_+|type-I-methionyl-aminopeptidase
MIKTPAQLAVMREAGRLLAQVFDMLDGFVAAGRSTLELDSAVEAFIRNDLKARPASLGQYDYPFCINTSINEVVCHGMPSAKQILKDGDIINIDITLEKGGFIADASKMYMIGNVTPKARRLVDMTFEAMWAGIRQVKPGARLGDIGHAIQSHAQANGYSVVREYCGHGIGRQMHEEPQILHFGRPGTGLELREGMVFTIEPMLNHGSAKTRSLKDGWTVVTKDNSLSAQWEHTVAVTADGFEVLTLQATQTFYTP
>NZ_CP017296.1|WP_003190946.1|2190329_2190530_+|ParD-like-family-protein
MGIVKITDQLHEQLRLASAAMDRSINAQAEFWIKIGLLAELNPHLPYNELINKLLLDKPDLIRGRS
>NZ_CP017296.1|WP_014718706.1|2189690_2189960_-|DUF1652-domain-containing-protein
MLSELELRSIIEGSFLPKRCECTKAEDASLTIRVYDDRDRDRVDLEVKGIHPDKLDSSRAICNLITGLREDLKQSHAPVLQRAGARGYH
>NZ_CP017296.1|WP_038450362.1|2187025_2189620_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MQKPSGFSTRAVLAVGLISLQYMNPQPSHAACVLTPGTGNDTYTCNNGSSAGLTDLSGDNSLTLSTGGAINGDVTFGPGIDTVEIRDGRVTGIVQQGDGVDRVVMMGGRIGGLFQGDGRDVLEMYDGIIDEAFEDGDVAYQRGGKIGRVNMKLDKNFYEMTGGEIRENLVTGFDTDTIIISGGTIGGNISTSGGDDSITVSGGVINGEIRASVGNDTFKWLGEGRINSRVLMGDGDDTVLLQGLNESKLNHTPFIDGGLGNDQLIFDATTSSTAARYIGLERVSLTKNSRLDLAGDFFLGDSGSNTGMFNIDGSSTLAVAQGGIRPYTAGQLATLNNAGTVDMTTDNSATSVLTVHGNYVGNNGQLHLQTVLGDENSATDKLVVSDGNISGHTQLSVSNLGGIGGLTQNNGIEVVQALNGAVSSNDAFALKGSVSAGAYEYLLFKGGTLANTKNSWFLRSSVVAVQPPAAPPVPPTPAVVVPVPPIPATPPVVDSDEPSVEPPTAQPQPPIEPAAPPPSQVAAATSPQSAASNPVLPTAVAGAAPIPLYRLEVPVYSVDIPAAQLMTLQALGTFHERQGEQSLLTETGAVPAGWGRAYGSDFNKSWSGTVAPSFDGTVKGYQVGHDLYAAETSGGQTQRLGLFIGQSRLRGDVKGFAMGWQNHRSGRVKLDGDNFGAYWTLTDPTGWYVDLVAMGTRLDGDNKSDRGVKMDTKGHALALSAEAGYPFRLSEHWEMEPQAQVIGQKIDLDSQHDGISKVSFDSQEYWTGRIGARLKGRYLVSNTPVEPYLRANVWHTFGGSDTVTFDGVDRIKSDHKSSTADMGIGVVAQLSSTVSVYMEGNYGTQLDDNNFEGVSGNFGVRARW
>NZ_CP017296.1|WP_020301116.1|2185942_2186881_+|carbohydrate-kinase
MYLVCGEALFDFFSEEDASGQAAKLNYKAIAGGSPFNVAVGLRRLGIESGLFAGLSTDYLGRRLQQVLNDEGISERFLVAFDAPTTLAMVAVGANGSPQYSFRGEGCADRQLQLTHLPPLGDEIRGLHVGSFSLVVQPIGDTLLNLVKRESGKRLISLDPNVRLNPQPDIHLWRARVAELVQHADLIKVSDEDLHLLYPDQTPESVLQGWLQHRCQLVFLTRGGDGASVFSRQHGSWSQPAVKVVMADTVGAGDTFQAALIAWLTEQQLDSVDGLQRLSREQIDAMLGFAIRAAALTCGKTGPDLPYRQQLA
>NZ_CP017296.1|WP_032901628.1|2184448_2185930_+|xylulokinase
MTQQNLFLGIDCGTQGTKAIVLDASSGKVLGLGAAAHTLISGANGRREQHTQEWLDAFTEATHRALQQAGVDGQDILGIGVSGQQHGLVLLDEQGEVLRPAKLWCDTETAPENDRLLQHLGGERGSLERLGVAIAPGYTVSKLLWTREQHPDVFARIAHILLPHDYLNYWLTGRACAEYGDASGTGYFNVRRREWDVALLQHIDPSGRLQAALPTLIEADQAVGTILPAIAERLGINPNAVVSSGGGDNMMGAIGTGNIAPGVITMSLGSSGTVYAFADQPNVSPQASVATFCSSSGGWLPLICTMNLTNATGVIRELFDLDLDAFNALVEQASIGADGVSMLPFLNGERVPALPHATGSLQGLTMTNLTRANLCRAVVEGTTFGLRYGLDLLRQTGLQSQSIRLIGGGSKSPLWRQMVADIMHTEVVCTEQSEAAALGAAIQAAWCQSGEPLASLCDKCVSIDPASRTLPVAANVSAYQQAYQRYQQHVATL
>NZ_CP017296.1|WP_038450359.1|2182831_2184313_+|mannitol-dehydrogenase-family-protein
MKLNKANLTQLAPQVQLPAYAIADTRQGIAHIGVGGFHRAHQAFYTDALMNTGEGLDWGICGVGLRSEDRKARDDLAGQDYLFTLYELGDTDDTQVRVIGSISDMLLAEDDAQALIDKLASPQIRIVSLTITEGGYCIDDSNGEFMAHLPQIQHDLAHPRAPKTVFGFICAALTQRRAAGTPAFTVMSCDNLPHNGAVIRKALLAFAALHDAGLHDWIKANVSFPNAMVDRITPMTSTAHRLQLHDQHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEEMKIGLLNGSHLALTYLGFLKGYRFVHETMNDPVFVAYMRAYMDLDVTPNLAPVPGIDLTEYKQTLVERFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETDRAALVVAAWALYLKGVDENGARYSIPDPRAAFCQDLVSDDALISQRLLGVEEIFGTAIPKSAAFVAAFERCYASLRDKGVTTTLQNLLNKPD
>NZ_CP017296.1|WP_038450357.1|2181709_2182813_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MANLKIKNLQKGFEGFSIIKGIDLEVNDKEFVVFVGPSGCGKSTLLRLIAGLEEVSDGTIELDGRNITEVTPAKRDLAMVFQTYALYPHMSVRKNMSFALDLAGVDKKLVESKVSEAARILELGPLLERKPKQLSGGQRQRVAIGRAIVRNPKIFLFDEPLSNLDAALRVQMRLELARLHKELQATMIYVTHDQVEAMTLADKVVVLNSGRIEQVGSPLELYHQPANLFVAGFLGTPKMGFLKGQVTRVDSQGCEVQLDAGTLISLPLSGATLSVGSAVTLGIRPEHLEMATPGQTTLTVTADVGERLGSDTFCHVITRNGEPLTMRIRGDMASQYGETLQLHLDPTHCHLFDTDGVAVARPLRAAA
>NZ_CP017296.1|WP_005788583.1|2180855_2181686_+|carbohydrate-ABC-transporter-permease
MTLQQSRRLQSLLLGTLAWAIAILIFFPIFWMVLTSFKTEIDAFATPPQFIFTPTLENYLHINERSNYFAYAWNSVVISFSATALCLLISVPAAYSMAFYETQRTKGTLLWMLSTKMLPPVGVLMPIYLLAKSFGLLDTRIALIIIYTLINLPIVVWMVYTYFKDIPKDILEAARLDGATLWQEMVRVLLPIAKGGLASTVLLSLILCWNEAFWSLNLTSSSAAPLTALIASYSSPEGLFWAKLSAVSTLACAPILIFGWISQKQLVRGLSFGAVK
>NZ_CP017296.1|WP_014718709.1|2192914_2193700_-|sulfite-exporter-TauE/SafE-family-protein
MDVGNIGFVVAGLIVGFIVGMTGVGGGSLMTPILLWFGINPATAVGTDLLYAAITKSGGVLVHSKNKNIDWTITGWLTLGSVPAVLLTLWFLASLHTDPSAMNAVIKQALGVVLLLTALAILFKKSLLAFAQRHAGDSYHLRPRNLNALTVVTGAILGTMVALTSIGAGALGTVALFILYPFLATRRLVGTEIAHAVPLTLVAGLGHASMGNMDWHLLGFLLMGSLPGIYMGSHMTGRIPDGVLRPCLAVMLMAVGYKLAF
>NZ_CP017296.1|WP_014718710.1|2193892_2194414_+|DUF3455-domain-containing-protein
MNAKTLLCLSSLLLAAPSAFAQAGLPDSIKVPDGHKVAMHTTGVGEITYECRDKANAAGQTEWTFVGPKAVLNDRNGQQVGTYFGPPATWQAKDGSTITGTQLAVAPSSPGNLPYQLVKANPAEGKGAMSGVVYIQRVALKGGVAPAAPCTTANKGAKEMVKYQADYLFWAAN
>NZ_CP017296.1|WP_014718711.1|2194500_2195031_+|sigma-70-family-RNA-polymerase-sigma-factor
MAELIFDYQVCLLACARGDHRALHQLYEQDSSRLLGVALRITRNKALAEDIVHDAFIKIWHGAHSFDPLRGSARGWVFSVTRHLALDVVRSAGRDVPLDDQYEPLAEPAQSIEFAARSGQIHQCLERLDPTRRTCILHAYVDGYSHSEIAQKLSTPLGTVKAWIKRSLAALRECMA
>NZ_CP017296.1|WP_014718712.1|2195027_2195702_+|DNA-directed-RNA-polymerase-sigma-70-factor
MNDSLDELASEYVLGTLPAEQRAEVQQRLAHDAALRAAVDAWEQRLLPLVALAQPVPPSAQLWRRIERRIKIAETGVAWWNLLAFWRGLSAVGLMASVVLAALLLTRPPMTAPSFVVVLMAPQSQAPGWVVQASDNRQIQLIPLGVMEIPADKALEFWTKADGWQGPVSLGLVKPGQTLSVPLDKLPPLAPNQLFELTLEGPNGSPTGKPTGPIHGIGRAVKVL
>NZ_CP017296.1|WP_038450364.1|2195702_2197004_-|two-component-sensor-histidine-kinase
MFRVLLRLYLITIVTYSAAIYLIPKLVIQLFEHRYMNYNIEQSRGLQKLMVKQYQRAPVERWSQVTDQLSRDFAPLKVQLLLRQDARYTPEEEQLLEQGKPVIRLGEWGWMEEISSPINQQFAVKLTVPPDPLDMNLLYWSMNVLVGAALLACLLVWLRPHWRDLERLKSTAALLGKGHLEARTGLAPSSSIGGLAAVFDTMADDIEHLLNQQRDLLNAVSHELRTPLTRLDFGLALALSEDLPPASRERLQSLVAHIRELDELVLELLSYSRLQNPAQLPERVEVALDEFIDSVLGSVDDELENPEIVIDVALDCAVERFSLDPRLTARALQNLLRNATRYCDKRIQVGVRVCPKGCEIWVDDDGIGIPADQRERIFEPFYRLDRSRDRATGGFGLGLAISRRALEAQGGTLTALASPLGGARFRVWLPNLS
>NZ_CP017296.1|WP_003190934.1|2197007_2197709_-|response-regulator-transcription-factor
MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQVCRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLSEPQVASDQIVMGNLCIDLSERTVTWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQRLRGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWEC
>NZ_CP017296.1|WP_038450366.1|2197880_2199023_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSKNLFAPFCLLALTLALSACGQSADEAPQMPLAKVRIETLQAKPLSITSELSGRIAAPRIAEVRARVAGVVMQRVFNEGHDVKQGDVLFRIDPAPFKADLDSALANLSKAEANAFQARLQEQRYSQLVEGNAISGQEYDNARAALRQTNAEVAANKAAVERARLNLGYATVTAPISGRIGRALVTEGALVGQNEATPLAIIQQLDPIHADLTQSTRELNDLRRAFRAGSLKQVGQDQAKATLIQDDGSLYPLPGKLLFAEISVDPGTGQIILRSEFPNPDLDLLPGSFVRVRVEQAVDKQGISVPQRAITRDSAGIPMVLLLDAEQTVSQQPVELGAVINNRWIVTSGLKPGDRIIVEGVQHARPGEKVEVDDSPLVKE
>NZ_CP017296.1|WP_038450367.1|2199029_2202128_+|multidrug-efflux-RND-transporter-permease-subunit
MPQFFIDRPIFAWVVALFILLAGFLAIPQLPVAQYPNVAPPKVEIYAVYPGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTDPEMAQVDVQNRLKVVEPRLPQAVTQQGLQVEKVSAGFLLLVTLTSNDGKLDDVALSDYLARNVMNELKRLDGVGKAQLYGAERAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTHTQEITAAVLVKGQLSTPAEFADIVLKASPDGSTVRIGDVARVEVGSQEYQFSTRLNGKPSTAVSVQLSPGANALSTATLVRAKMDELSRYFPANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMATEGLSPKEATKKAMGQITGAIIGITLVLVAVFLPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAKGEHHAKVGFFGWFNQRFEHLTNRYEGWVAYALKRSGRYLLIYLVLLVGMGLLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVAEQIEAHNAGEPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERGSDDSASSIADRANMAFSELKDAIAYAVLPPPVDGLGTSSGFEFRLQDRGGVGHAGLMAARTELLDAAAKSPILANVRESALAEAPQVQLEVDRKQANALGVSFADVGNVLSSAIGSAYINDFPNQGRMQRVVVQAEGDQRSQVADLMKIHVRNNAGKMVPLSAFVEAKWTQGPTQLTRYNGYPAIAISGEAAPGHSTGEAMNEIQRLVSQLPAGLGQEWTGLSLQERLSGSQAPLLLGLSLLIVFLCLAALYESWSIPTSVLLVVPLGVLGAVLAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKDLYDQGEDLIDATLKAARLRLRPIIMTSMAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLAVVFVPVFFVVVMKLVRKRHKAN
>NZ_CP017296.1|WP_014718716.1|2202249_2202891_+|DUF1345-domain-containing-protein
MPFLARTHPRLSSAAVLGLAVGILVPADTLASKVLIGWNIGVWTYLLLMLWLTIRAKAEDVKRIAEIEDENAGLVLFMVCIAAIASLATITFELVGSKDLATSERLLHYGFTGLTVIGSWLLIGVIFSVHYARLYYTWPGKEPALRFAEGLLTPNYWDFLYFSFTIGVAVQTSDVGVATRSLRKVVLGQSLIGFLFNTAILGFSINIAAGLFG
>NZ_CP017296.1|WP_038450369.1|2202963_2203803_+|AraC-family-transcriptional-regulator
MPAHNWIDLSQDADTGIETLRAHFEGHAYDPHWHDSYLVGVTEQGVQQFNCRRMRHDSVPGQVFLLEPGELHDGNAPTVDGFTYRMLYLDPQWLEREIASVFEEAPAHHQLSFARTLASDPRLALATSQAFESLHHGELRIVRQSALDQLLERLTGQLYWRMRYRDDPRLPQVAHKARDYLHAHLHQDVGMDELALTCGVDRFRLSRAFKSAFGLPPHAYLVQLRLARARYLLAKGDQPADVAMALGFADQSHLGRWFMRAYGLTPAAYRKRCTNLPDR

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Crispr_ID: NZ_CP017296_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_8

2250643-2250739

Orphan

Consensus_repeat	Method
TCGCAGGCAAGCCAGCTCCCACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_8

>merge|NZ_CP017296|8|2250643-2250739|CRISPRCasFinder
TCGCAGGCAAGCCAGCTCCCACAGTTGGATCGTTGGGGTGTCGGGTAGATAGGCGTCGGCTGGCGGGCCGCCTTCGCAGGCAAGCCAGCGCCCACAG

>NZ_CP017296|8|8|2250643-2250739|CRISPRCasFinder
TCGCAGGCAAGCCAGCTCCCACAG	TTGGATCGTTGGGGTGTCGGGTAGATAGGCGTCGGCTGGCGGGCCGCCT
TCGCAGGCAAGCCAGCGCCCACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_014718750.1\|2248128_2248341_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_014718745.1\|2239960_2240785_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP017296.1\|WP_014718751.1\|2248442_2248934_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP017296.1\|WP_014718760.1\|2261284_2261755_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_014718756.1\|2256848_2257286_-\|DUF3995-domain-containing-protein	unknown	unknown	gnl\|CDD\|372505
NZ_CP017296.1\|WP_038450397.1\|2260145_2261153_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP017296.1\|WP_014718744.1\|2239632_2239893_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_069868546.1\|2257861_2259988_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP017296.1\|WP_032901663.1\|2252194_2255371_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP017296.1\|WP_014718743.1\|2237965_2239288_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP017296.1\|WP_069868542.1\|2243878_2245621_+\|phosphoethanolamine-transferase-CptA	unknown	unknown	gnl\|CDD\|333729
NZ_CP017296.1\|WP_019817575.1\|2245749_2247987_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NZ_CP017296.1\|WP_014718746.1\|2240781_2242305_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237233
NZ_CP017296.1\|WP_014718762.1\|2262515_2262746_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_019817573.1\|2242301_2243285_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP017296.1\|WP_014718755.1\|2255367_2256534_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP017296.1\|WP_032901681.1\|2249099_2250206_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP017296.1\|WP_032872432.1\|2262129_2262405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368629
NZ_CP017296.1\|WP_069868544.1\|2250746_2252198_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP017296.1\|WP_014718757.1\|2257379_2257769_+\|DUF2946-domain-containing-protein	unknown	unknown	gnl\|CDD\|371400

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_032872432.1\|2262129_2262405_+\|hypothetical-protein	gnl\|CDD\|368629	pfam05826, Phospholip_A2_2, Phospholipase A2. This family consists of several phospholipase A2 like proteins mostly from insects.	0.00338206
NZ_CP017296.1\|WP_032901663.1\|2252194_2255371_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP017296.1\|WP_014718751.1\|2248442_2248934_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.79332e-16
NZ_CP017296.1\|WP_014718756.1\|2256848_2257286_-\|DUF3995-domain-containing-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	7.97696e-19
NZ_CP017296.1\|WP_014718745.1\|2239960_2240785_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.30209e-70
NZ_CP017296.1\|WP_069868546.1\|2257861_2259988_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.18946e-72
NZ_CP017296.1\|WP_038450397.1\|2260145_2261153_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.84703e-114
NZ_CP017296.1\|WP_014718743.1\|2237965_2239288_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.58635e-163
NZ_CP017296.1\|WP_069868542.1\|2243878_2245621_+\|phosphoethanolamine-transferase-CptA	gnl\|CDD\|333729	NF012179, CptA, phosphoethanolamine transferase CptA.	0
NZ_CP017296.1\|WP_019817575.1\|2245749_2247987_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
NZ_CP017296.1\|WP_014718755.1\|2255367_2256534_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.14195e-78
NZ_CP017296.1\|WP_019817573.1\|2242301_2243285_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP017296.1\|WP_014718746.1\|2240781_2242305_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|237233	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase.	0
NZ_CP017296.1\|WP_032901681.1\|2249099_2250206_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	2.9364e-139
NZ_CP017296.1\|WP_069868544.1\|2250746_2252198_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	8.71624e-72
NZ_CP017296.1\|WP_014718757.1\|2257379_2257769_+\|DUF2946-domain-containing-protein	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	2.36346e-06

>NZ_CP017296.1|WP_032901681.1|2249099_2250206_-|cell-division-protein-ZapE
MTFDSPLAAYQHAIAQPGFVADDAQRRAVQALQACHEALHQGRSSIAGVYLWGPVGRGKTWLMDQFYQSLHVPARRQHFHHFMAWVHQRLFQLTGTQDPLQALARELSQAVRVLCFDELFVNDIGDAIILGRLFQVMFEEGVVMVCTSNQPPDQLYADGFNRERFLPGIDALKQHMQVVAVDGGEDHRLHPGVGMQRYWVNQPEALAAVFRQLSQGQAVNSVAVSVGHRTIMTVQASDTVLWCRYADLCEQPLAAMDFMLVCDRFHAILLGDVPNLSAQIRPGRIARGTEDGAERVVAGDRELPQLSVHDDSVRRFIALVDECYDRKVPLFIDAAVPLHSLYTEGYLEFPFRRTLSRLQEMQLQRFAT
>NZ_CP017296.1|WP_014718751.1|2248442_2248934_-|GNAT-family-N-acetyltransferase
MDTPDILVLQASYTNAVHADAIGLLLNSYAEDPMGGGHSLPADLLQQLPAELAKRPHAFSVLAFVGGEPAGLVNCFEGFSTFACRPLVNVHDVMVKEQFRGLGLSQKMLQKVEEIARQRGCCKITLEVLEGNALAQSAYRKFGFDDSVFDPAHGRMLFWHKPL
>NZ_CP017296.1|WP_014718750.1|2248128_2248341_+|hypothetical-protein
MKMSTLILASLMTLTSAAAFAEGGAERSKEFYNNFSFIQEKTHGKAEQQVASADGKSVKSETVDQAQPNS
>NZ_CP017296.1|WP_019817575.1|2245749_2247987_+|TonB-dependent-siderophore-receptor
MFAPFTRSMTFTLGLFSLALSPDSLADTDPDTAPAKALELGATTISADSLGATTEHTGAYTTGSMNTATRLNLSVKETPQSISVVTRQQMDDFNLNTLTDVLRQTTGVNVQHYDSDRVYYSARGYGISNFQVDGMLNTFGYMKTDADTIIYDRIEVVRGATGLTTGAGDPSATVNMVRKRPTAHWQAKTGISGASHDNYYSYVDVGGPLAFDGKLRGRSVLAYRDSQSFRDNYGLQRAVGYGILEGDLSDDTVLAVGFDYQDKQVQGTSWGTVPYWNSQGGKARLPRSTNMAAHWSSWPLTDKTTFATLDHRLGGDWHLKAAYTHRQSDTDGKVYYGGAGFPNPDRSGMTAWASHMRGTSRMEAIDLNLAGSYTLLGREHALMMGYGEAAQRDVSPFMRSDLPASYYPIQDWKHMGGIGKFTDQVTDLKGEHSKKQQKAGYLATRLSLTDRLHAVLGSRYGSWELESAEPKYDANDQLTASGKTSQTHNDMWTPYAGLLYDITPQYTVYASYTDIFKPQDYRDADKKYLEPVVGSNYEVGLKGSVLNERLNLAAAYFWSTQDNVAERDDSVPPNPVTGEEYYRSGGKGNKVNGFELEAAGEITPDWNLTAGYTYTHSVNGSDKRNNTSQPLNLVKISSAYRLPGAWRNLTVGGAVNWQSETYDFSNRPTGQRNSEGRPITTRAKITQQGYTVVNLMSRYQFDEQVSASVNVNNLFDKKYYERVGFYNGVYWGEPRSVTLALDWKL
>NZ_CP017296.1|WP_069868542.1|2243878_2245621_+|phosphoethanolamine-transferase-CptA
MAMFKRSTTTAKGFDWAGLGWLFLFFWYFSGITQLLIQLTGTSGFSGFRQAFFMSALWLAPMLLFPRRTRLLAALIGVVLWACSMASLGYFFIYQQEFSQSVIFIMFESNISEAGEYATQYFAWWIVLAFIAHTAFAIFLWTRLRPVYLPRGQSIVAAIAIVLAVVGYPLVKQIATSETMELAIDRFETRIEPAVPWQMIVAYRRYTEQLDNMQGMLTSASKIPPLNNLKDSMAGQPSTLVLVIGESTNRQRMSLYGYPRNTTPELDKLRDQLAVFDNVITPRPYTIEALQQVLTFADEENPDLYLKTPSIVSVMKQAGYKTFWITNQQTMTKRNTMLTTFSEQADEQVYLNNNRNQNARQYDGDVLAPFSKALADTAERKFIVVHLLGTHMSYQYRYPPTFDKFTDRQGVPAGVSDAQLPTYNSYDNAVLYNDFVVSSLIKDYAKTDPNGFLLYLSDHGEDVFDSAGHDTLGRNEGKPTAPMYTIPFMAYASPKWRESHDWSFAGDLQRPYSSSQLIHTWADMAGLSFDELDHSKSLVSDSFKPRPLLIGNPYETKQKALIDFSLIKPKKADSAEVVAK
>NZ_CP017296.1|WP_019817573.1|2242301_2243285_-|decarboxylating-6-phosphogluconate-dehydrogenase
MQLGIIGLGRMGGNIARRLMLNGHTTVVYDRNEAFVKALSEEGATGVADLKALVAGLQKPRAVWVMLPAGAPTEDTINALSELLEDGDVIIDGGNTNYKDDVRRGKALAEKGLHYVDVGTSGGVWGLERGYCMMIGGDTETVNRLDPIFKSLAPGLGNIPRTKDRSASADPRAEQGYIHAGPAGSGHFVKMIHNGIEYGMMQAFAEGFDILKTKNSENLPEDQRFDLNVGDIAEVWRRGSVVSSWLLDLTADALATDPKLDGYSGSVADSGEGRWTIEAAMEQAVPVPVLSTSLFARFRSRQQSTYGDKMLSAMRFGFGGHVETSKK
>NZ_CP017296.1|WP_014718746.1|2240781_2242305_-|glucose-6-phosphate-dehydrogenase
MTANGKKPKAEPAPPTTLFLFGAHGDLVKRLLMPALYNLSRDGLLGDGLRIVGVDHNAISDADFAKKLEDFIRTEASSKVRGNAENALDPALWAQLAKGISYVEGDFLDDSTYADIASKIADSGTANAVFYLATAPRFFSEVVQRLGSAGLLNETDDGFRRVVIEKPFGSDLATAEALNACLLKVMSEKQIYRIDHYLGKETVQNILVSRFSNVLFEAFWNNHYIDHVQITAAETVGVETRGNFFEKTGTLRDMVPNHLFQLLAMVAMEPPAAFGADAVRGEKAKVVGAIRPWSLEDARANSVRGQYTAGEIAGKPLPGYREEANVAPDSSTETFVALKVMIDNWRWVGVPFYLRTGKRMSIRDTEIVICFKQAPYAQFRDTEVDELKPTYLKIQIQPNEGMWFDLLAKQPGPTLEMANIELGFDYKDFFEMQPSTGYETLIYDCMTGDQTLFQRADNIENGWRAVQPFLDAWKEDDGIQAYKAGEDGPAAADALLARDGRAWHSLG
>NZ_CP017296.1|WP_014718745.1|2239960_2240785_-|Cof-type-HAD-IIB-family-hydrolase
MSDATIQPIRFVLSDVDGTLLHPDHSLSQRTADAIRAMREAGVLFSLASGRPPKAMRHLIETFGIDVPVAGFNGGTLVNPDGSILVAHHLPAEAALITLALFSAEPDVEVWVFADGDWLRRDPPGPMVQREADGLGYGPVVVESFEPYLDRVDKIVAASNNTQLLVELEAQLQPKVQGLAQVSRSQPVYLDVTAMLANKGEALKTLAEHLGVPLAQTAAIGDGGNDPAMFHVAGLSIAMGQAEETVKRQANVVTGSNVEDGAAEAFERFILAAR
>NZ_CP017296.1|WP_014718744.1|2239632_2239893_+|hypothetical-protein
MNAPLRINEALLIADRAFQPFQCVAWHDGVGALSLSVIDRTNTRIGSKQLSCTAYTDPAQLENLLLQARAELDKDGHQLQSWAMPK
>NZ_CP017296.1|WP_014718743.1|2237965_2239288_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MIATPAQRRLLVVDPCDDCHGLLPGLRTAGWEVDSCALEAVGERSCDVGLLRLQRDHLERPEAVKELIGRSGTEWIAVLSQDVLRLQNVGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMARLRGKGYAPVDEPHELLGESRPIRELRKLLSKLAPTESPVLIRGDSGTGKELVAKTLHRQSQRHAKPFVAINCGAIPEHLIQSELFGHEKGAFTGAHQRKIGRIEAANGGTLFLDEIGDLPMELQANLLRFLQEKHIERVGGSQPIPVDVRVLAATHVNLEAAVEKGAFREDLYYRLNVLQVVTAPLRERHGDVAMLANHFSRFYSQETGRRPRSFSEEALVAMGQHPWPGNVRELANRVRRGLVLAEGRQIEAADLGLQGQQAMSAPMATLEDYKHRAERQALCDVLNRHSDNLSVAARVLGISRPTFYRLLHKHQIR
>NZ_CP017296.1|WP_069868544.1|2250746_2252198_-|efflux-transporter-outer-membrane-subunit
MKQAYPAFLLSLTLLAGCGSVGPDYSAPVLPAAQRATSFGAPIAGLGPGEVEVQWWQVFDEPALSQLIQRALTANHDIGIAAARLDEAKALLRESRQGFLPSGGAALGYEHRQRSEVETPFGEQRSIETTRAAVDAAWEIDLFGRVRRSVEAAQAQAGSRQALLRSVQASVAATVAATWFELQGIEAEQAVVADISQSQRDSLGLVGQMVSVGAATEFDRLRAEALLRNVEAVAPDLERRRAKSTNALAVLLGQAPQGFKPPLARPGRETLNLRTLQVGDPAGLLARRADIAAAERTLAAATAQIGVETAGLYPDIQVQGSIGLLAGSLSALGDAGMQSNFIAPVIRWSLLDTGRVRARIAASEARTQAALIAYDQTVLRALQETDDAFQANRTAGNALGLRLLEAAANREAAGFARERFAQGEGVYLDVLEAERADFTSRRALTAARTEQRLAVVGIYKALGGGWEVCERAGQACQGATVLR
>NZ_CP017296.1|WP_032901663.1|2252194_2255371_-|efflux-RND-transporter-permease-subunit
MSFPRFFIDRPIFAIVLSVLMMIGGIVAFFHLPLSEYPAVTPPTVQVTASYPGANPQVIAETVAAPLEQVITGVEGMLYMTSQSATDGRMILTATFAQGTNADMAQIQVQNRVSRALPRLPEEVQRLGVVTQKTSPDILMVVHLLSPDQRYDPLYISNYAYLQVRDELSRLPGINDVLVWGAGEYSMRLWLDPDLIAARGLTAGDVIAAVREQNVQVAAGSVGQAPDSTAAFQVTVNTLGRLTDEEQFGDIIIRTGDNGQVTRLRDVARIEMGADAYALRSLLDGEPAVALQIIQSPGANALDVAQSVRETMQRLQTNFPEGLVSRIAYDPTVFVRASLESVAITLMEAILLVVIVVVVFLRNWRASLIPLMAVPVSIIGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENVERHIENGEEPMQAARRAMGEVTGPIIAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAISTILSAVNSLTLSPALAGLLLRPRHAALVHDPRSLRGRATRLLEVLGRPFQRAPQAYGNTVRKVVGRRGVALLAYGGLLALTWFGFNAVPAGFVPMQDKYYLVGIAQLPNAASLERTDAVVRQMSKIALDEPGVESVVAFPGLSVNGFVNVPNAAVMFVMLDPFKERTSPDMAAVAIAGRLQAKFASIPDGFLGVFPPPPVPGLGVTGGFKLQVEDRGGVGLEALVQQTQVLMTKATESGQVAGLMTSLDVNAPQLNVDIDRTQVKSQGVRLADVFESLQVYLGSLYVNDFNRFGRTYKVTAQADADHRMQAEAIGRLQVRNAVGDMLPLSAFVTVTPSSGPDRVIHYNGYPSADISGGAMPGVSSGQAVALMERLAQEVLPEGVTYEWTDLTYQQKLAGSSALFIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAILGVWLVEGDNNVFVQIGLVVLVGLAAKNAILIVEFARSLEAEGASPLEAVIHACQLRLRPILMTSLAFIAGVVPLVFASGAGAEMRHAMGVAVFAGMLGVTLFGLFLTPVFYVVMRSLALRVQRQGASPKVQLKESAS
>NZ_CP017296.1|WP_014718755.1|2255367_2256534_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MYTKPVSLITGVLAVALTLGGCSDNSPPAAAAKPPGVPVAQVVARAVTPFVEYTGSLTAIDQVQLRPRVSGYLQSVSVPEGQFVAKGSPLFVIDPRMFQAAVNAAKARLREAEANALLAQAEHGRAEQLYAKKVVARDRLDTAVASLNAGRAQVEAARAALDTAQLDLSYTRVTAPISGRIDRALVTEGNYVTRGETALTTIVSIDPLHVYFDVDERTYLHSLAATRQHAGAKGEQAAKVMVAMLNDTTYARAGRVDFLANSADRKTGTVRVRAVVENPDGRLTPGLFAKVKLDTGAAQPRVLIADHSIGTDQGRRYVLVVGEGDKTEYRPVELGPVVDGLRVIEQGLQPGERIVVKGLVRPGMQVTPLAASIEGKPLEAPLAVGGVQ
>NZ_CP017296.1|WP_014718756.1|2256848_2257286_-|DUF3995-domain-containing-protein
MSFVIARWIVGVFTFISMVHLYWAAGGKLGSLAAIPQLPGEFASGPRPAFKPSALGTFLVAMGLVAIALLVCLRAGLYFSPVSHGALQWGISAIAVLMFARAIGDSELVGFFKKVGGSRFARLDTYFYSPLCLVLGAGLLVVAWT
>NZ_CP017296.1|WP_014718757.1|2257379_2257769_+|DUF2946-domain-containing-protein
MKLARADRSLIAWMLYCCVLFNVFACSIGHGQRVGMQLNGISGQFCTVDPRTQAPLPSNSTDENLPTLSKAFGCPLCSTGGMGPALNSHLNVAVLPQPHAPPAAVVLAADIPARFTWPAANPRAPPALA
>NZ_CP017296.1|WP_069868546.1|2257861_2259988_+|TonB-dependent-receptor
MKHLPLLAGLFGCLPVCASALELAPTTIDGEQSAEPGLALDQSSGMASRLGLSVRETPASVAIANRNDIERHGAKTFRDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGINVATGLARPVDAWIYDRVELVGGPSSLINGAGSVGGSLNYVTKLANREEQAIEGQLSYGSYDTAGLAFGLNHALTEPGAEVQHYARLDVSRNTNHSYIDRDQRDAWSVAFSLLSDLTPNLSHTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVADGRYEQRTIWARSIIDYRINDSTTLKNTLYHLDSQRDYRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHDTSVFGLATTWSGGFEYKVNSTTNSPLNVPGKSTVDPNHYDPGHFYDIPGTQPGFVKDKTNQVTTKALFVENRLGLTDKLSLLTGLRYDAIDLDVTNHRTITATNPRHFKRSWEPVTGRVGLTYQFIPSANVYVQYSTAVEQPNTTTQVFDVSTGKQWEIGSKFDYLEGRGSATVAAYKIERKDFAVTDPLDPTNSIPVGAQSSKGIELASSLRITPRLLAEGNFAWVDAQYDEFNEKIASGEVVSRKGNTPTNVPKRVGNLWLTYDFAEDWQGGVDARYVAQVYADNANTQTVPAYTLFGTFLRYKLDANTSVTGRVRNLTNEVYAEFAHVSPAYYLGSPRTFELAVHTKF
>NZ_CP017296.1|WP_038450397.1|2260145_2261153_-|ABC-transporter-substrate-binding-protein
MKGLKSLLAMGLTTLSLSLPVSAAQAPVHFADLNWESGSLITEVLRFIVEKGYDLPTDTLPGTTITLETALAKNDIQVIGEEWAGRSPVWVKAQAEGKVAGLGDIVKGATEGWWVPEYVVKGDPSKGLKPLAPDLKSVQDLARYKDVFKDPESPGKGRFLNSPIGWTSEVVNKQKLKAYGLDDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLEEPPFDADAWKTLTDADNPNPKPTRSLASKLSIGVSTPFQQEHPQIAQFFEKVEFPIEPLNKALATMSEHHTPPREVAQAFLKKHPQVWKAWLTDDVAQKVEASLK
>NZ_CP017296.1|WP_014718760.1|2261284_2261755_-|hypothetical-protein
MAVSNLDMHALFVLGDLRAKLVKQFQSRFVYVTEQTPEGIYIAEIDTETALVVDDKPRLELKVGDHFRAAVLPSREGGKFELRFRDIKLTVYGIGDYAFVSSNEGQGIVFKEGHSVMLVFAAHDQLQEGLTKTLKAVTGKAAKWRKGELVTFKASE
>NZ_CP017296.1|WP_032872432.1|2262129_2262405_+|hypothetical-protein
MQRRQHDATSFHTRSPCPDEQQYYCLLNLNGYSNSVLYQVVPAGKNFFHILEVPSGKIKGFRSDHIKACELAKSLEAKLYASGGGIVSSPG
>NZ_CP017296.1|WP_014718762.1|2262515_2262746_+|hypothetical-protein
MTEFDIGEFIIHGDAREVDGEFQAVIIMRAKPPLNKVTAHQVEKDRWFKTADAAAVAGKEAAKALKAAVDCGALNS

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Crispr_ID: NZ_CP017296_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_9

3659613-3659708

Orphan

Consensus_repeat	Method
GATCGTGGGGTGTCAGGTAGATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_9

>merge|NZ_CP017296|9|3659613-3659708|CRISPRCasFinder
GATCGTGGGGTGTCAGGTAGATAGCCGTCGGCTGGCAAGCCGTCATCGCAGGCAAGCCAGCTCCCACAGTTGGATCGTGGGGTGTCAGGTAGATAG

>NZ_CP017296|9|9|3659613-3659708|CRISPRCasFinder
GATCGTGGGGTGTCAGGTAGATAG	CCGTCGGCTGGCAAGCCGTCATCGCAGGCAAGCCAGCTCCCACAGTTG
GATCGTGGGGTGTCAGGTAGATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_019821226.1\|3653677_3654037_-\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_CP017296.1\|WP_003193918.1\|3668862_3669597_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP017296.1\|WP_003193903.1\|3654259_3654634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_014719746.1\|3663181_3664501_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NZ_CP017296.1\|WP_019821231.1\|3647643_3648624_+\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|224219
NZ_CP017296.1\|WP_069868748.1\|3656470_3657412_-\|iron-sulfur-binding-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235575
NZ_CP017296.1\|WP_020302717.1\|3651290_3652286_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP017296.1\|WP_032902737.1\|3648610_3650140_+\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NZ_CP017296.1\|WP_003193916.1\|3666350_3667280_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP017296.1\|WP_014719745.1\|3661586_3662912_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP017296.1\|WP_069868746.1\|3652293_3653625_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP017296.1\|WP_038451370.1\|3659826_3661593_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP017296.1\|WP_014719750.1\|3667403_3668873_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP017296.1\|WP_038451375.1\|3669735_3670692_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP017296.1\|WP_003193904.1\|3654807_3656259_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP017296.1\|WP_038451372.1\|3664636_3665269_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP017296.1\|WP_019817340.1\|3665394_3665640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038451364.1\|3650136_3651294_+\|DUF4350-domain-containing-protein	unknown	unknown	gnl\|CDD\|379527
NZ_CP017296.1\|WP_003193915.1\|3665681_3666023_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NZ_CP017296.1\|WP_003193907.1\|3657628_3659152_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_019821226.1\|3653677_3654037_-\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	4.76656e-05
NZ_CP017296.1\|WP_003193918.1\|3668862_3669597_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.01209e-80
NZ_CP017296.1\|WP_014719746.1\|3663181_3664501_+\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0
NZ_CP017296.1\|WP_019821231.1\|3647643_3648624_+\|stage-II-sporulation-protein-M	gnl\|CDD\|224219	COG1300, SpoIIM, Uncharacterized membrane protein [Function unknown].	5.17621e-46
NZ_CP017296.1\|WP_069868748.1\|3656470_3657412_-\|iron-sulfur-binding-ferredoxin-reductase	gnl\|CDD\|235575	PRK05713, PRK05713, iron-sulfur-binding ferredoxin reductase.	0
NZ_CP017296.1\|WP_020302717.1\|3651290_3652286_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.63406e-94
NZ_CP017296.1\|WP_032902737.1\|3648610_3650140_+\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	4.73731e-05
NZ_CP017296.1\|WP_003193916.1\|3666350_3667280_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	3.48757e-57
NZ_CP017296.1\|WP_014719745.1\|3661586_3662912_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP017296.1\|WP_069868746.1\|3652293_3653625_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.28291e-66
NZ_CP017296.1\|WP_038451370.1\|3659826_3661593_+\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	0
NZ_CP017296.1\|WP_014719750.1\|3667403_3668873_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.52353e-46
NZ_CP017296.1\|WP_038451375.1\|3669735_3670692_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	3.69721e-173
NZ_CP017296.1\|WP_003193904.1\|3654807_3656259_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP017296.1\|WP_038451372.1\|3664636_3665269_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.85647e-40
NZ_CP017296.1\|WP_003193915.1\|3665681_3666023_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	7.55553e-11
NZ_CP017296.1\|WP_038451364.1\|3650136_3651294_+\|DUF4350-domain-containing-protein	gnl\|CDD\|379527	pfam14258, DUF4350, Domain of unknown function (DUF4350). This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length.	8.73586e-08
NZ_CP017296.1\|WP_003193907.1\|3657628_3659152_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	8.39593e-145

>NZ_CP017296.1|WP_003193907.1|3657628_3659152_+|fumarate-hydratase
MTVIKQDDLIQSVADALQFISYYHPVDFIQAMHEAYLREESPAARDSIAQILINSRMCATGHRPICQDTGIVTVFVRVGMDVRWDGATMGLDDMINEGVRRAYNLPENVLRASILADPAGARKNTKDNTPAVIHYSIVPGNTVEVDVAAKGGGSENKSKMAMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAAVMAKEVLMESIDIHELKKRGPQNRIEEMRLELFEKVNQLGIGAQGLGGLTTVLDVKIMDYPTHAASLPVCMIPNCAATRHAHFVLDGSGPASLEAPPLDAYPEIVWEAGPSARRVNLDTLTPEEVQSWKPGETVLLNGKMLTGRDAAHKRMVEMLNKGETLPVDLKGRFIYYVGPVDPVREEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPTAIEAIKDHKAVYLMAVGGAAYLVAQAIKKSRVVAFAELGMEAIYEFDVKDMPVTVAVDSKGESVHITGPAIWQKKISDSLAVEVQ
>NZ_CP017296.1|WP_069868748.1|3656470_3657412_-|iron-sulfur-binding-ferredoxin-reductase
MPELYVGERHWSVTPGSNLLDALNQAGVAVPFSCRAGSCHACLVRCEGEVDDQQPEALSPTQRQQGWRLACQCRVIADLKVDAFDPQRDGLPAQVVGADWLSSTVLRLRLQPERALRYRAGQHLVLWAGQVARPYSLASLPQEEPYLEFHIDCRQPGAFSDAARQLKVGDPVCLGELRGGALHYDPDWQSRPLWLLASGTGLGPLWGVLREALRQDHQGEIRVIHLAHEAEAHYLAEPLAALAAQHGHLTVELWTAAQLQQALAQLRLVSRHTLALLCGHPASVEAFSKRLFLAGLPRNQLLADVFLARPFTL
>NZ_CP017296.1|WP_003193904.1|3654807_3656259_+|pyruvate-kinase
MSVRRTKIVATLGPASNSPEVLEQLILAGLDVARLNFSHGTPDEHKARAKLVRDLAAKHGRFVALLGDLQGPKIRIAKFTNKRIELKIGDKFTFSTSHPLTEGTQDVVGIDYPDLVKDCGVGDELLLDDGRVVMRVDTATPTELNCTVIIGGPLSDHKGINRRGGGLTAPALTEKDKADIKLAAEMEVDYLAVSFPRDAADMEYARKLRDEAGGTAWLVAKIERAEAVADDETLDGLIKASDAVMVARGDLGVEIGDAELIGIQKKIILHARRHNKAVIVATQMMESMIQNPMPTRAEVSDVANAVLDYTDAVMLSAESAAGPYPLEAVQAMARICVGAEKHPTSKTSSHRIGKVFESCDQSIALAAMYTANHFPGVKAIIALTESGYTPLIMSRIRSSVPIYAFTPHREAQARAAMFRGVYTIPFDPASLAPNEVSQKAIDELVKRGVVEKGDWVILTKGDSYHTTGGTNGMKILHVGDPQV
>NZ_CP017296.1|WP_003193903.1|3654259_3654634_-|hypothetical-protein
MRILLVAALAVSVVGCTRWSMDHHLNNAYRAYGVGDCQRVTLELSQVDRESRTRRYVQPEVSMLRGQCLERQKLFVDAAQTYQFIIGHYPSSEYAYRARARLDTLQQLGHLPAAGLAKPRPASL
>NZ_CP017296.1|WP_019821226.1|3653677_3654037_-|PilZ-domain-containing-protein
MFTERRIERHQLPYFLQVFNRITDKPIGYLGNVSENGLMLISSLPMMTEVDFELRLKVPVAQGEFKAIDLTATCLWSHEDVTPQHYDSGFSVLEAPEEYRHLINALLQYFSFYPLQASV
>NZ_CP017296.1|WP_069868746.1|3652293_3653625_+|DUF58-domain-containing-protein
MKPTRLLLTWLSALLGLSTLLGASAALQLKVPATLHSVAWGLLLALLLLAMLDAARLRRRPSVRVYRTLPGSLALGRWEEIRLCLEHDYPQPLTVQVFDHVPDGLGVENLPQFIQLRPGERAELGYRVRPLRRGHFHFSRCELLLPSPLGLWSARRWVDTRDSTRVYPDFARLYGAQLRGVDNWLSQLGVRQHQRRGLGLEFHQLREFREGDSLRQIDWKATARQRTPIAREYQDERDQQIVFMLDCGQHMRSQDDELSHFDHALNACLLLSYVALRQGDAVGLCTFASDQPRYLKPVKGSGQLNLLLNAVYDLQTTRKTADYQAAASQLLARQKRRALVIIVTNLRDEEDEALMAAVQRIGRHHRVLVASLREEVLDQLRQTPVQTLPEALAYSGTIDYLNTRNQRHDRLSAHGLSVLDTLPSALGAGLVTRYLEWKKAGVF
>NZ_CP017296.1|WP_020302717.1|3651290_3652286_+|MoxR-family-ATPase
MSDSPLATALTAENLQQASQQAQALRVELRKAVIGQDLVIDDVLTALIAGGHVLLEGVPGLGKTLLVRALARCFGGDFARIQFTPDLMPSDVTGHAVYDLQTEQFKLRKGPLFTHLLLADEINRAPAKTQAALLEAMQERQVTLEGEALPIGQPFMVLATQNPIEQEGTYPLPEAELDRFMLKVRMDYPDALQELDMVREVTRSSKADMLEVQPLRTVLQAEDVVRMQQIASDLPLDEQVLDYAVRLARATRSWPGLAIGAGPRASIALVRGARARALLRGGEFVTPDDIKGCALAVLRHRVRIAPELDIDGLEVDQVLQQLLDQIAAPRQ
>NZ_CP017296.1|WP_038451364.1|3650136_3651294_+|DUF4350-domain-containing-protein
MNRALLWTALLLACLVGAGGLYAWHKAIPYEEVVDRGPSPEARANPYLAAEHFLRQHGLVVAHAKGLERLAELPAKGHSLLLLGERSNMTPRQVDQLLGWAKAGGHLLLVAEALWDEEAGTSGDLLLDRLTIRQTLSDTFDEPVPPRKKTKPDLTKLYVDNETAPAYFSFDTYFNLTDPKHLAQFSANSAQSSHLMQLDLGQGRVTVITDSDLWKTTDIGNHDNAWLLWYLNQGTDVTLLFNSDTDDLFTLLLRYFPQALVALVALLALGLWQAGMRQGPIQTPAPKARRQLQEHLQASADFLLRRSGQGTLLQALRHDILRAARRRHPGFEHLDASEQRQVLEHLTRQPHHIISQALEPVALKRLSSADFSRQVAHLQTLRNAL
>NZ_CP017296.1|WP_032902737.1|3648610_3650140_+|DUF4129-domain-containing-protein
MRLTDASVVIRPRTSWEAMDLGVLMAREHRVLLMGSWALVSLPVFSLLTVLLWNYPSLVMFLFWWLKPAFDRLPLYILSKALFGEPPSLKQAVRQWPQLLKGQLFASLTWRRLSMSRSFTLPVSQLEGLDGDARQRRLGVLLQRNAGAARWLTTIGVHMEIGLWFGGMTLFYLFIPQQVELDWDWQRLIFASASDVLWLEHLSNAFYALVLVFWEPIYVACGFSLYLNRRTVLEAWDLELVFRRLRQRLSNVAPLLLLVVGLALLHISPPTMADETTAHKPLSTQAASQSIQALLEKPPFKNPETVTRYRFGEEKAPVKNKATGDGKLPGWLQALLDNLNSDTFKYVAKTLEILLWSLVIGGLALVCWRYREWLRTFVSRLGPTRTAAPSPVPAQLFGLELGTETLPEDIASTAEQLWPTHPREALGLLYRGLLSRLLHEFDLPLTSADTEGQVLERVHHLQQPQLLAFSDELTRHWQNLAYGHRLPPSSAQQKLCSDWRALFSDGAGQ
>NZ_CP017296.1|WP_019821231.1|3647643_3648624_+|stage-II-sporulation-protein-M
MKQSLFESRHQRQWHTFAEQLTQLEQGKAKAADVADFPHQYRRLCQHLALAQQRGYSSYLVDTLQQLALRGHQQLYRHRSQLTANILAFLLADFPRLVREQWRFVLIAGLLFFGSLVGIALLVYLFPDLIYSIISPQQVADMQGMYNPDASRLGRAAERAASEDWMMFGYYVMHNIGIAFQTFAAGLLFGLGSVFFLIFNGLVIGAVSGHLTDIGYGQTFWSFVIGHGAFELSAITLAGAAGLQLGWSLVAPGRLARSEALRLAARKSVRMLCGVMVFLLIAAFIEAYWSSTTRIEPWIKYAVGAALWLLVAAYLSLAGRSRHAPD
>NZ_CP017296.1|WP_038451370.1|3659826_3661593_+|sensor-histidine-kinase
MIVIPRPLRLTFYSLLIIAGAVLAAALATRHAERQALVDDAARANQQLALYANSLHTLIERYRALPAVLALDSEMISALKGPLDATTQDRLNRKLERINGAAQSSTLELMDRTGLAVAASNWNLPSSYVGHNYAFRPYFSQTLSHGTGRFYAVGVTTGIPGYFLSSAVVDEHEQFLGAMVVKLEFPELEREWAQGNDLLLVSDARGIVFIANQPGWRYRNLRPLSENDLAELKTTRQYDKKQLQPLDTQPLQRFDENSHLIRVNGPDGNANYIWESLPLKREGWTLHLLRKPQFAFEDQRNAGLAAAGSWLALVFLVLFLSQRWRLARLRQRSREELEQLVEERTQALRTAQDGLVQSAKLAALGQMSAALAHEINQPLTAQRMQLATLRLLLDHGRVDDAYKALTPLDDMLTRMAALTGHLKTFARKSPSGLREKLDLATVVDQSLHLLDARLRDEAIGVVLDLTRPAWVRGDAIRLEQVLINLLRNALDAMADKPRKRLEIRLHADQQLWQLSVCDSGGGIAEEHLSSVFDPFFTTKPVGDGLGLGLAVSYAIVHELGGRLSAANRGDGATFTLTLPIALETPDLC
>NZ_CP017296.1|WP_014719745.1|3661586_3662912_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MLNAVIVVDDEASIRTAVEQWLSLSGFDVQLFSRAEECLAQLPKDFAGVILSDVRMPGLSGLELLAEVQRRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPDALLNSLRRALDKRGLILENRRLHQQADHRAQLESSLLGVSKGLQSLRRQVLDLASLPVNVLIRGETGSGKELVARCLHDFGPRAKKPFVALNCAAIPEQLFEAELFGHESGAFTGAHGKRIGKLEYAHGGTLFLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIQVDLRIIAATKPDLLEEARAGRFREDLAYRLNVAQLRLPPLRERREDIPLLYEHFAQSAAERLGRQVEPLSGPQLGRLLSHDWPGNVRELANVAERQVLGLDEPEPQGIEAGQSLAAQQEAFEAHCLKAALTRHKGDIKAVLAELQLPRRTFNEKMQRHGLVREMFV
>NZ_CP017296.1|WP_014719746.1|3663181_3664501_+|MFS-transporter
MDNSNTVPLGSTAAKAQERTTSSRIKSIFSGSVGNMVEWYDWYVYAAFSLYFAKAFFPKGDTTAQLLNTAAIFAVGFLMRPIGGWLMGLYADKVGRKKALMASVYLMCFGSLLIALSPGYEIIGIGAPILLVFARLLQGLSVGGEYGTSATYLSEMATKERRGFYSSFQYVTLISGQLIALAVLIVLQQVLTTEQLYAWGWRIPFAIGALCAVVALYLRRGMEETESFTKKEKAKESAMRTLMRHPKELMTVVGLTMGGTLAFYTYTTYMQKYLVNTVGMSISDSTTISAATLFLFMCLQPIIGGLSDKIGRRPILIAFGVLGTLFTVPILTTLHTIQSWWGAFFLIMAALIIVSGYTSINAVVKAELFPTEIRALGVGLPYALTVSIFGGTAEYIALWFKSIGMETGYYWYVTACIAVSLMVYVTMKDTRKHSRITTD
>NZ_CP017296.1|WP_038451372.1|3664636_3665269_+|flavin-reductase-family-protein
MSDDIHFYEPANGHGLPHDPFNAIVGPRPIGWISSHDREGRLNLAPYSFFNAFNYIPPIIGFSSVGRKDSLNNIEQTGEFVWNLATRPLAEQMNQSCAAVSPEVNEFELSGLTPVASKIVGVPRVGESPVSFECKVTQIIQLQRADQQLVPSWLVLGEVVAVHIAKWLLKDGIYDTAAAEPILRGGGPADYFQLGPEALFKMYRPGATKP
>NZ_CP017296.1|WP_019817340.1|3665394_3665640_-|hypothetical-protein
MARKQFAHHEAVSAVVPGEGGYSAAVAVKALDGMGAPRFHKILDGQTFKTASDADDAATLQLEHLVDVDAEGQLTWATAER
>NZ_CP017296.1|WP_003193915.1|3665681_3666023_-|antibiotic-biosynthesis-monooxygenase
MSTPIPASHMAFIRARSGCSTELGARLSSLIEPGRQAQGCLQFSLQHSQVDPDVWLVSGFWSSEQAMSAYFNSPALMIFTELLNDMVVRSMDFQTFTDASAAQAYGEYLQLAG
>NZ_CP017296.1|WP_003193916.1|3666350_3667280_+|AraC-family-transcriptional-regulator
MPSPESKPVPLDAEMEKQRAELASIVHRHTWEDGSYGTAITSLYLNRHNAPRDFMPVLVEPALCILASGSKEVRLADEIFAYDPLNYLVFSVAMPVAGRIIDATAEDPNLSVRINIDPAQLTALIAEAGPMGVPSRPTSRGMYVDRIDHALLDAVLRLTRLLDTPKDIAMLAPLINREILYRLLRGPQGYRLYEIAVANSQSHRVSQAITWLNGNYEQPLRIDDLAKEVNLSVSTLHHRFKAITAMSPLQYQKQLRLQEARRLMIAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLRDLARLRQSI
>NZ_CP017296.1|WP_014719750.1|3667403_3668873_-|HAMP-domain-containing-protein
MPTEALNERRRRFPVPRSLLGRMLLLTLLAVLFAQALSSVIWVSQLRATQLEGLVTSARSLAHSMTASVSYFRSLPVAYRPLVLDQLRSMGGTRFVVTLNDRPLDMQLLPETPRKQAVLVAVDEVLRQTLGADVHISVEFVSAEDLRIFNAGLKLDELPRSWAHYALTLEPVNPPVLVTQIQLAPGEWLYIASLLPEPYTSLEEQGLPSQQVWFIVLTSGFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVAEGGGSEVVEVGRAFNAMRERISRYLTERSQLFSAISHDLRTPITRLRLRVELLEDENLQNKFGRDLDELELLVKGALQCVKDTDIHENIQPVDLNHVLECLVEPYLAPHGNGRVTLDGAALSAYPGKPLALKRCIGNLIDNALKYGQNAHLHIEDDGAQFILHVDDEGPGVPQQRLEQVFEPHFRLAGQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPRTLD
>NZ_CP017296.1|WP_003193918.1|3668862_3669597_-|response-regulator-transcription-factor
MSVISKSILLVDDDQEIRELLQTYLSRAGFQVRGVSDGAGFRQAMNEAPCDLVILDVMLPDEDGFSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLRRCQFGQERSSGGDVWVFDEWRLDMISHRLFHVDGEEVILSGADFALLKLFLDHPQQILDRDTIGNATRGRDLMPLDRIVDMAVSRLRQRLRDTEKPPRLIRTVRGSGYQLAASVVAGNAH
>NZ_CP017296.1|WP_038451375.1|3669735_3670692_-|glucokinase
MKLALVGDIGGTNARFALWRDQELHSIRVHATADHGSPEEAIKVYLKEEGLEIGDIGAVCLSVAGPVSGDEFKFTNNHWRLSKTAFCKALQVDELLLVNDFSAMALGMTRLKPDEFRVVCEGTPEPLRPAVVIGPGTGLGVGTLLDLGAGRWAALPGEGGHVDLPLSSPRETQLWQHIYSEIGHVSAETALSGGGLPRLYRAICAVDGHEPVLDTPEAITAAGLAGDPVAMEVLDQFSIWLGRVAGNNVLTTGGRGGVYIVGGVIPRFADFFIASGFAKSFADKGCMSDYFKGIPVWLVTAPYSGLTGAGVALEQAFA

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Crispr_ID: NZ_CP017296_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017296_10

5194851-5194978

Orphan

Consensus_repeat	Method
GCTCCCACAGGGGAATGCATTCCAAAGGTGGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017296_10

>merge|NZ_CP017296|10|5194851-5194978|CRISPRCasFinder
GCTCCCACAGGGGAATGCATTCCAAAGGTGGGAGCCGGTGGTGTATCAGGTGAAATAACGCTGCCCGTTACGGCGTCATCGCGGGCAAGCCCGGCTCCCACAAGGGAATGCATTCCAAAGGTGGGAGC

>NZ_CP017296|10|10|5194851-5194978|CRISPRCasFinder
GCTCCCACAGGGGAATGCATTCCAAAGGTGGGAGC	CGGTGGTGTATCAGGTGAAATAACGCTGCCCGTTACGGCGTCATCGCGGGCAAGCCCG
GCTCCCACAAGGGAATGCATTCCAAAGGTGGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017296.1\|WP_003187613.1\|5181713_5182496_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP017296.1\|WP_032901770.1\|5188249_5189320_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP017296.1\|WP_038448484.1\|5200983_5202177_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP017296.1\|WP_003187635.1\|5196926_5197571_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP017296.1\|WP_038448486.1\|5203644_5204433_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_038448488.1\|5204804_5205551_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
NZ_CP017296.1\|WP_038448481.1\|5199625_5200984_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP017296.1\|WP_038448471.1\|5192626_5194816_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|371457
NZ_CP017296.1\|WP_014716444.1\|5182865_5183531_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP017296.1\|WP_038448479.1\|5198672_5199488_-\|methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP017296.1\|WP_069868892.1\|5195017_5195644_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP017296.1\|WP_038448475.1\|5195820_5196924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017296.1\|WP_020302225.1\|5184940_5185789_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270412
NZ_CP017296.1\|WP_038448469.1\|5187170_5188253_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP017296.1\|WP_032901767.1\|5185888_5187049_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984
NZ_CP017296.1\|WP_020302224.1\|5183511_5184171_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP017296.1\|WP_019819871.1\|5202217_5203459_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP017296.1\|WP_038448477.1\|5197560_5198676_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP017296.1\|WP_019819880.1\|5189316_5192382_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP017296.1\|WP_034125472.1\|5184167_5184944_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP017296.1\|WP_003187613.1\|5181713_5182496_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	4.0502e-128
NZ_CP017296.1\|WP_032901770.1\|5188249_5189320_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.70861e-62
NZ_CP017296.1\|WP_038448484.1\|5200983_5202177_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP017296.1\|WP_003187635.1\|5196926_5197571_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.30963e-100
NZ_CP017296.1\|WP_038448481.1\|5199625_5200984_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP017296.1\|WP_038448471.1\|5192626_5194816_+\|glycoside-hydrolase	gnl\|CDD\|371457	pfam11308, Glyco_hydro_129, Glycosyl hydrolases related to GH101 family, GH129. This family of bacterial and lower eukaryote glycosyl hydrolases is related to CAZy family GH129,and distantly to GH101, and is made up of sub-families GHL1-GHL3.	7.6453e-134
NZ_CP017296.1\|WP_014716444.1\|5182865_5183531_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.39474e-58
NZ_CP017296.1\|WP_038448479.1\|5198672_5199488_-\|methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.23478e-84
NZ_CP017296.1\|WP_069868892.1\|5195017_5195644_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.0122e-22
NZ_CP017296.1\|WP_038448488.1\|5204804_5205551_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	3.28375e-176
NZ_CP017296.1\|WP_020302225.1\|5184940_5185789_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270412	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold. This subfamily comprises of the periplasmic-binding protein component of ABC transporter specific for cysteine and its closely related proteins. The cysteine-binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.82155e-96
NZ_CP017296.1\|WP_038448469.1\|5187170_5188253_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.26408e-66
NZ_CP017296.1\|WP_032901767.1\|5185888_5187049_-\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	6.10971e-115
NZ_CP017296.1\|WP_020302224.1\|5183511_5184171_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.6708e-66
NZ_CP017296.1\|WP_019819871.1\|5202217_5203459_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP017296.1\|WP_038448477.1\|5197560_5198676_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	7.54558e-165
NZ_CP017296.1\|WP_019819880.1\|5189316_5192382_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP017296.1\|WP_034125472.1\|5184167_5184944_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.19025e-145

>NZ_CP017296.1|WP_038448471.1|5192626_5194816_+|glycoside-hydrolase
MQCLRFTLLFCALLLAPSAFAATVLENALWRVELDPATLALRVTPAGQASVQASSGVASHAVSQLQNTPDQATWQWDNGAYRLTARLQQRDLALTINAREPGELALLRQPAEAMGRGLIWPLAEGHYVPAGNAIWKTFLLERGEFNTTQDLSLPLWGVDHGGFTLSWLLTNPYNNRLQWQADGNGLALCAAHEFTSLAPDAPMTLRLYLGDADPLAGAKRYRQWLVEQGRYEPLADKLRQTPEAQKLLGASHVYLWDNGLLALGDVRDWPRLIQRLRSHELKSLMDKESAQLLAQSAALNRYEQTVLLRGLNAAINTKARQAWQVQEPDMTRLAARYGELRSELAVDFAGALSDSPQTWGSSTIQTLRDAGLQRLLLTLGEGWEGGLWHPEAIRAGVEAGFLMAPYDSYETALSATENPDWTTAHLGAKAYRDCAIVLKDGKLKTGFQKSGHYTDPRCVRPLLEARVKAVHAKAGFNAWFLDAYATSMLFDSYRSNASMTQAQNAEGNIDASRWINTVPKLVTGSEDGNAITAQGILFAHGMQTPVIGWGDREMTQDPQSPYFVGNWYPTEQPAVFFKSVPLKEPFRTLYFEPTMRVPLYQAVFHGSVITTHHWLFDSLKLSNVQGDNELTQLLYNVPPLYHLSAATLKARLPIIQRQDRFFRPLHQRLATQEMTDFRWLTVDKQLQQTTFADGTRLVANFSAVDKQGYAGRSVTVLVEGEEPVVYQVK
>NZ_CP017296.1|WP_019819880.1|5189316_5192382_+|efflux-RND-transporter-permease-subunit
MKGSFNLSDWALKHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQEETLKQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVFLKDTTSAKAIPEIWYQVRKKIDDIRGTFPQGLQGPSFNDEFGDVFGSVYAFTGDGLSMRQLRDYVEQVRAEIRSVPGLGKVEMIGQQDEVIYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFASEKDLANVNLRLNDRFYRLADIADISRGYVDPARPMFRFNGKPAIGLAIAMQKGGNIQSFGKALHGRMDELTADLPVGVGVHKVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFISLGMRAGLVVACSIPLVLALVFVFMEYSGITMQRVSLGALIIALGLLVDDAMITVEMMITRLEKGETKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWVVAVLFAPVIGVHILSANVKPHNAEPGRIGRAFNGGMLWAMRNRWWAIGITVALFVASVFSMQFVQNQFFPSSDRPEILVDLNLPQNASINETRKAVDRLEAIIKDDPDIARWSTYIGQGAIRFYLPLDQQLENPYYAQLVIVSKGLEERGALIARLQKRLRDDFVGIGSYVQPLEMGPPVGRPIQYRVSGKDTDQVRKHAIELATLLDQNTHLGEIIYDWNEPGKVLRVDIAQDKARQLGLSSEDVAQLMNSVVSGAAVTQVHDDIYLINVVGRAEDAERGTPETLQNLQIVTPNGTSIPLLAFATVRYELEQPLVWRRDRKPTITIKAAVRDEMQPTDLVKQLAPTIEKFSEGLPVGYKVATGGTVEESGKAQGPIASVVPLMLFLMATFLMIQLHSVQKMFLVASVAPLGLIGVVLALIPTGTPMGFVAILGILALIGIIIRNSVILVTQIHEYEEAGYTPWDAVVEATEHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKIREPKHEHQPQQD
>NZ_CP017296.1|WP_032901770.1|5188249_5189320_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKQLTLIVAASLLLMACSKEEAPPEPIRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVPGRIARRAVDVGAEVEKGALLAVLDPTDQQNQLRAAQGDLARVQAQFINAQANARRQQELFNRGVGAQAQLDVAQTDLKTTQATLDQARASVNQAKDQLNYAELRTDHAGIVTAWNAEAGQVVSAGQQVVTLARPDIKEAVIDLPAGLAERLPADVVFLVAGQLDPSVHTTAVVREIEPQAQSATRTRRARLSLAETPPAFRLGTAISVTLSTAIAPRIELPLSALQEVDGKTRIWLLDTQSQTVQPREVTVISRDARSALLNGSVKPGERIVTAGVNSLKPGQKVKIDEDSPR
>NZ_CP017296.1|WP_038448469.1|5187170_5188253_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MGGRTSTFIFSLGLLALLSGCGQDKAEPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSFRVGGKIIQRMVDVGDRVTARQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGYTSRSEYDAAQAALRSSQSALAAAQAQLANAREQLGYTALIADAPGIITARQAEVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANTGTVQVKIALQSLPKGMELGSVVSATANGPAKASIELPWSALTKDLSEPAVWLVDGEGKAQLHKVTVARYLTGKVIIGEGLKGGEKVVIAGGQLLHPGMVVEIAQPGAQP
>NZ_CP017296.1|WP_032901767.1|5185888_5187049_-|AAA-family-ATPase
MLKTLAVANYRSINKLVVPLDRLNLVTGPNGSGKSNLYRALRLLAETAQGGVINALAREGGLDSTFWAGPETISRRMRNGEVPVESTVRQGVKRLRLGFAAEDFSYAISLGLPEKTLSAFKLDPEVKKECIWAGHVYRPASLLVQRSGPMVRAREGRAWDVLAHHTPNYHSLFDQVGSLRGSPEVLLLRESIRGWRFYDHFRSDVDAPVRQPQLGTRTPVLHHDGRDLAAALQTIREIGDPEALQRAVSDAFPGARLHIEPLQGGRFAIEFYQEGLLRPLSAAELSDGTLRYLLLIAALLTPRPPTMMVLNEPETSLHPDLLPALARLIIQASKQCQVWVVSHASRLIAALQQDEGCNSIVLEKVLGETRIVGQGMLDGPAWHWPE
>NZ_CP017296.1|WP_020302225.1|5184940_5185789_+|transporter-substrate-binding-domain-containing-protein
MKKLLLPLFAVALLAGCDKKAEEPVKPAAVSYIDKIKARDKLIVGVFTDKPPFGFVDEAGRYVGFDTDIGRQFAKDLLGDENKVEFVAVEPASRIPFLQSDKVDLILANMTVTPERKEAVDFTNPNLKVAVQALVPNDSAVKSLDDLATRTTIVTTGTTADIWLTKNHPDWKLLKFEKNSESLQALSAGRGDAYAQDNLVLFSWAKQNPGYRVLEEKLGDEAPIAPAVKKGNIELRDWVNAELAKLGEEKFLLKLYDQYVRKELSDDTKPESVIVEGGKWQG
>NZ_CP017296.1|WP_034125472.1|5184167_5184944_+|amino-acid-ABC-transporter-ATP-binding-protein
MSALIEFQGFNKFFGEAQVLKGIDLSVQRGEVVVILGPSGCGKSTLLRCLNGLEVAHSGSLRFAGKELLDKTTDWRQVRQDIGMVFQSYHLFPHMSVLDNILLGPLKVQKRDPREAREQAEKLLERVGLADKRDAFPRQLSGGQQQRIAIVRSLCMNPQVMLFDEVTAALDPEMVKEVLEVIQDLARDGMTLLIVTHEMAFARAVADRVVFMEAGRILEHNTPEAFFTNPQTARAQQFLEKFSFVSTLPKKIKELELI
>NZ_CP017296.1|WP_020302224.1|5183511_5184171_+|amino-acid-ABC-transporter-permease
MASSGLELLWVSLPQLGKGAAQTLSISFLSIGFSTVGGVLYGVLRTLNNKAINGVLRVYLELFRAIPVLVWLYLLFFGVPIFFGLSIPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQREAGLSIGLSDPQLYGYVLLPQALRRMTPPTINVYTRIIKTSSLAVLIGVVDVIKVGQQIIERTYESVLIYGALFLFFFFICYPLSAASKLLERRWAQA
>NZ_CP017296.1|WP_014716444.1|5182865_5183531_+|amino-acid-ABC-transporter-permease
MTFDFAFILSTLPAFLKAVGVTLQVGLIAIATSLLVALINAALLVFRTPYLSRLVALYVELARNTPLLIQLFFVYFALPALGFNISGFWAAIITMTFLGGAYLTEVLRAGVEAVPQAQIESGKSIGLSDWQLLRHVILPQAGILSLPALFANFIFLLKETTVVSAVAVPEILYTTKSYIALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS
>NZ_CP017296.1|WP_003187613.1|5181713_5182496_+|ABC-transporter-substrate-binding-protein
MKKVLLFTALAAALTAGFAQANEKLVVAATPIPHAEILELIKPTLAKEGVDLQIKVFTDYVQPNVQVAEKRLDANYFQTLPYLENFNKGKGTNLITVVGVHVEPFGGYSKKIKKIEDLKDGATVAIPNEGSNSGRALLLLQKAGVITLKDPTNALATPKDIASNPKNLKFKELESALLPRVLDQVDLDLINTNYALEAGLNPAKDALIIEDAKSPYVNFLVARPDNKDSDAIQKLAKALTSPEVKAFIEKKYNGAVVPAF
>NZ_CP017296.1|WP_069868892.1|5195017_5195644_-|class-I-SAM-dependent-methyltransferase
MKLAPDDLNQITSTTLGHYNKVAEDFREGTRDHDVSQNVDALLRHIQGMPPFTVLDFGCGPGRDLQTFTRMGHIAVGLDGSERFAQMAREESGCEVLQQDFLKLDLPADRFDGVFANAVLFHIPKQELPRVLKELHGALKPGGVLFSSNPRGENQEGWNGPRYGSYHDLQAWRALLTAAGFEELEHYYRPAGLPREQQPWLASVWRKI
>NZ_CP017296.1|WP_038448475.1|5195820_5196924_+|hypothetical-protein
MEEEKRPTVGNDIAPNKVDQYATRLSNGLFWLNERAWPLTVGILSVAGLYLYQYIQMEKVPLSILSASAFTALPAMFAMLVFVIGMMGASILVPTFILFTRLNGTGVRLSDQLNLSPQSPQETAQHRRLLGHWAASLLVMFVFWMSAVYLSVNAESGFLLTFSWIVAIMAAVVAYVGIIIRARPAHVALRELSGEFWLASAGAGVVQMVVILMVTVPVSRAFSEYSDSAVFFAPFMAAEMAVLFLIQGSAACLVVRMRVQKNPVAFASLVAFALIVLLGLIPASGAKLGGLPLQGSASGGRVCTLMTWTAQAQVPGALVDADNPKRSVKLRVMADSDGSYIVRPWQAKEKTITFVPRASVAQLDECP
>NZ_CP017296.1|WP_003187635.1|5196926_5197571_-|ABC-transporter-permease
MWFDRLVQGAIDTLLMVGVSSLIALLVGIPLAVFLVTSDKGGIYQAPALNRVLGAFVNLFRSIPFLILMVALIPFTRLIVGTTYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLIEAAQAMGCRRWHIIWHVLLPEALPGIVGGFTITLVTMINSSAMAGAIGAGGLGDIAYRYGYQRFDTQIMLTVIVLLVVLVAVIQLSGDRLARVLNKR
>NZ_CP017296.1|WP_038448477.1|5197560_5198676_-|ATP-binding-cassette-domain-containing-protein
MNAANARLHDLAPAPSHAEQTELHPDLNHAHVRFINLGKTYDGTVHALQGIDLAIQRGEVFGIIGRSGAGKSSLIRTINRLEQPSSGRVLIDQVDIGSFDEDHLVALRRRIGMIFQHFNLMSAKTVWQNVELPLKVAGVPQAQRARKVHELLELVGLQDKHKAYPAQLSGGQKQRVGIARALVHDPEILLCDEATSALDPETTQSILGLLREINQRLGLTIVLITHEMAVIRDICHRVVVLEHGRIVEQGPVWQVFGDPQHEVSKTLLAPLQHGLPPELQRRLQPTPASADAALVLRLQFTGSDTLEPDLAALFSALGGRVRLLQGGVERIQGHALGQLLLAVNGSPHNAEELRKRAANWAQQVEVLGYVV
>NZ_CP017296.1|WP_038448479.1|5198672_5199488_-|methionine-ABC-transporter-substrate-binding-protein
MKKTFLNNPVKALALAFGLFSSAVFAADAPLKIGTTAAFAIPLEAAVEEAGKQGLKVELVEFTDWIAPNVSLAAGDIDVNYFQHIPFLENAKAAAGFDLVPYAPGIINNVGLYSKKYKSFNELPAGASVAIANDPINSGRGLQLLAKAGLITLKPGVGYKATEEDIVANPKNIKILQVEAVQLVRAYDDADLVQGYPAYIRLSKTFDAESALLFDGLDHPEYVIQFVIQPKSKTDPRVIKFVDIYQHSPVVRAALDKSLGKLYQVGWEAKP
>NZ_CP017296.1|WP_038448481.1|5199625_5200984_-|LLM-class-flavin-dependent-oxidoreductase
MSKKKILLNAFNMNCIGHINHGLWTHPRDNSTEYKTLEYWTELAKILERGLFDGLFIADIVGVYDVYQDSIDVPLQESIQLPVNDPLLLVSAMAAVTQHLGFGLTANLTYEPPYLFARRMSTLDHLSRGRVGWNIVTGYLDSAAKAMGLTEQVEHDRRYDQADEYLQVLYKLWEGSWEDDAVHNDRQARVYAQPGKVHKVKHHGEFYQVEGYHLCEPSPQRTPVLFQAGSSERGLLFAGRHAECVFISGQNKAATKRQVDKVRASAVEAGRNPDDIKVFMGLNVIVGATEALAWNKHAEYLSYASAEAGVAHFSASTGIDFAQYALDEPIQYVKSNAIQSATQNLQNNDWTRRKLLDQHALGGRYITLVGSPEQVADELESWISETGLDGFNLTRIVTPESYVDFIELVIPELQRRGSYKTEYAQGTLREKVFHDTARLPNQHTGSTYRHVV
>NZ_CP017296.1|WP_038448484.1|5200983_5202177_-|SfnB-family-sulfur-acquisition-oxidoreductase
MTLSHPVAVITSDEQALIVASDLAEDLRRDSAQRDRERRLPLPELDGFSRSGLWGISVPKAYGGAGVSNVTLAKVIALIAQADGSLGQIPQNHFYALEVLRVNGSPEQQQRLYAEVLAGQRFGNALAELGTKTAHDRITSLTRDGDGFRINGRKFYATGAIYAQRIPTSVVDANGVQQLAFVPRDSEGLTVIDDWSGFGQRTTGSGSVVFDNVWVAAQDVVPFQSAFERPTTVGPLAQILHAAIDTGIARAAFEDALHFVRTKTRPWIDAGNDKATEDPLTLKSFGHLSSRLHAAEALLERSGEFLDRAQADSNAQTVAAASIAVAEVRALSTEISLTAGSTLFELAGSQATLAEHGLDRHWRNARVHTLHDPVRWKYHAVGNYYLNDENPPLRGTI
>NZ_CP017296.1|WP_019819871.1|5202217_5203459_-|SfnB-family-sulfur-acquisition-oxidoreductase
MSNLALTSPQSDVDVAPLLLPATVLRNDAQALSAAHELAQAARAQAAQRDQQRKLPWAQLEQFTRSGLGSISIPREYGGPQVSFVTLAEVFAIISAADPALGQIPQNHFGILHVLQGTATERQKKQLFQSVLDGWRIGNGGPERGTKNTLELKARLTAEGDGYVLSGQKFYSTGALFAHWVAIKALNDDGKQVMAFVRRGSEGLRIVDDWSGFGQRTTASGTVLLDRVAVDPDLVIDNWRLGESPNIQGAVSQLIQAAIDAGIARGALDDAIAFVRERSRPWIDAKVERASDDLYVIADIGKLKIELHAAEALLRKAGQVLDQVSAAPITAQSAAHASIAVAEAKVLTTEVALQVTEKLFELAGSRATLAEFNLDRHWRNARVHTLHDPVRWKYHAIGAYRLNGTLPARHSWI
>NZ_CP017296.1|WP_038448486.1|5203644_5204433_-|hypothetical-protein
MTHTQTSATLRAPRLPQAIGNGISALASAHLQVDISPYPSMEEGDLIELFWNNCFAASRKVTACKIGTCTHLCVPQSFVQDGPARVYYQVLQIGHGPMRSAVTLVRVKTNYPGGQPSPRLNPEGSDENQNLAPVNLPETIRRHGVNSSQVRRGIPLTIEPYLNMSTGDAITLRWGDVRLDLPRIQAQSVGLAVQVWVPPHVIVEAGDDCRLEVTYCILDRVGNNSRWAPARTLRIAACTPPRSASPAPGYQPRRFGSPCEPG
>NZ_CP017296.1|WP_038448488.1|5204804_5205551_-|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MIVVEKLTKHFNGQVVLNGIDLEVKEGEVVAIIGPSGSGKTTFLRCLNFLEEPTSGRIKVGDIEIDSSRPLNQQQGLVRRLRQHVGFVFQNFNLFPHRTALENVIEGPIVVKKMPREAAAELGRKLLARVGLAGKEASYPRRLSGGQQQRVAIARALAMEPEVILFDEPTSALDPELVGEVLATIRSLAEENRTMVIVTHEMSFARDVANRVIFFDKGVIVEQGEAKALFANPREERTKQFLSKFLAH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017296_10	10.1\|5194886\|58\|NZ_CP017296\|CRISPRCasFinder	5194886-5194943	58	NZ_CP017296.1	5194794-5194851	0	1.0

1. spacer 10.1|5194886|58|NZ_CP017296|CRISPRCasFinder matches to position: 5194794-5194851, mismatch: 0, identity: 1.0

cggtggtgtatcaggtgaaataacgctgcccgttacggcgtcatcgcgggcaagcccg	CRISPR spacer
cggtggtgtatcaggtgaaataacgctgcccgttacggcgtcatcgcgggcaagcccg	Protospacer
**********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

355844 : 441075

uncultured_Caudovirales_phage(20.0%)

plate,holin,tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069868300.1\|355844_356315_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_014717138.1\|356448_357558_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-23	30.9
WP_014717139.1\|357554_358475_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	7.1e-19	27.4
WP_014717140.1\|358908_361017_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_054898038.1\|361094_361433_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_012722487.1\|361510_361981_-	bacterioferritin	NA	NA	NA	NA
WP_003188977.1\|362182_362401_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_003172097.1\|362644_363247_+	peroxiredoxin	NA	NA	NA	NA
WP_003188980.1\|363311_363983_-	ribonuclease T	NA	NA	NA	NA
WP_014717142.1\|363979_365026_-	dihydroorotase	NA	NA	NA	NA
WP_019817696.1\|365182_366091_+	OmpA family protein	NA	NA	NA	NA
WP_003188984.1\|366219_367437_+	argininosuccinate synthase	NA	NA	NA	NA
WP_003188986.1\|368045_368678_+	response regulator transcription factor	NA	NA	NA	NA
WP_014717144.1\|368761_368944_-	hypothetical protein	NA	NA	NA	NA
WP_003188989.1\|369051_369690_-	endonuclease III	NA	NA	NA	NA
WP_069868302.1\|369750_370719_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_060767092.1\|370806_372858_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_034135812.1\|373030_374125_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_014717148.1\|374646_374970_-	ferredoxin family protein	NA	NA	NA	NA
WP_038449077.1\|375112_377704_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.0e-30	22.0
WP_080643468.1\|377918_378119_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_069868304.1\|378572_381260_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_060767089.1\|381324_382380_+	hydroxyacid dehydrogenase	M1NSB9	Streptococcus_phage	1.9e-20	35.8
WP_046071212.1\|382407_383061_+	RraA family protein	NA	NA	NA	NA
WP_014717156.1\|383721_384210_-	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	3.8e-27	44.5
WP_014717157.1\|384444_385179_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	6.3e-119	87.7
WP_005785384.1\|385769_386108_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.4e-44	85.4
WP_014717158.1\|386131_386647_+	hypothetical protein	NA	NA	NA	NA
WP_014717160.1\|387270_387603_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	5.1e-36	67.3
WP_014717161.1\|387599_388595_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	3.2e-113	64.4
WP_014717162.1\|388591_389230_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	4.8e-38	51.9
WP_014717163.1\|389226_389757_+\|tail	tail fiber protein	B0ZSG1	Halomonas_phage	3.2e-48	56.2
WP_020301162.1\|389810_390563_+	hypothetical protein	NA	NA	NA	NA
WP_014717165.1\|390572_390809_+	hypothetical protein	NA	NA	NA	NA
WP_014717166.1\|391073_392240_+\|tail	tail protein	B0ZSG8	Halomonas_phage	7.2e-125	57.0
WP_014717167.1\|392239_392746_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	2.2e-22	34.5
WP_014717168.1\|392926_393499_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.6e-29	39.3
WP_038449089.1\|393627_395850_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_014717171.1\|395849_396233_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	1.3e-35	58.3
WP_014717172.1\|396225_396438_+\|tail	tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	4.0e-18	65.7
WP_032872893.1\|396447_397449_+\|tail	phage-like tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	1.6e-96	52.7
WP_014717174.1\|397471_398029_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.6e-74	72.1
WP_014717175.1\|398181_398682_+	CinA family protein	B5TK85	Pseudomonas_phage	4.1e-69	82.5
WP_014717176.1\|398765_399824_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4
WP_014717177.1\|399832_400300_+	recombination regulator RecX	NA	NA	NA	NA
WP_014717178.1\|400361_401474_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_069868306.1\|401768_402203_-	hypothetical protein	NA	NA	NA	NA
WP_014717180.1\|402381_403101_+	DTW domain-containing protein	NA	NA	NA	NA
WP_003189050.1\|403352_404003_+	response regulator transcription factor	NA	NA	NA	NA
WP_019817716.1\|404078_404441_+	diacylglycerol kinase	NA	NA	NA	NA
WP_016977932.1\|404444_405431_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003189055.1\|405496_406276_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_038449092.1\|406408_407104_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_005785469.1\|407108_407570_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.6e-38	52.0
WP_032903270.1\|407638_408349_-	RNA-binding protein S4	NA	NA	NA	NA
WP_020301153.1\|408556_409027_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003231334.1\|409127_410468_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_014717185.1\|410649_410985_-	putative addiction module antidote protein	NA	NA	NA	NA
WP_020301152.1\|410981_411305_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.4e-14	39.4
WP_014717187.1\|411719_413621_+	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	2.9e-75	33.3
WP_038449160.1\|413756_414863_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_014717189.1\|414966_415503_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014717190.1\|415708_415894_+	hypothetical protein	NA	NA	NA	NA
WP_032904593.1\|415948_417574_-	glucan biosynthesis protein D	NA	NA	NA	NA
WP_014717192.1\|417878_418586_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_014717193.1\|418796_420419_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_014717194.1\|420418_420931_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_014717195.1\|420927_422190_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_020301147.1\|422186_422888_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_032903262.1\|422884_425161_+	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	7.4e-09	27.4
WP_003189079.1\|425157_426168_+	chemotaxis response regulator protein-glutamate methylesterase	Q6XM27	Feldmannia_irregularis_virus	9.9e-06	40.3
WP_014717198.1\|426220_427222_+	PleD family two-component system response regulator	A0A127AWB9	Bacillus_phage	1.6e-16	35.2
WP_096001736.1\|427397_428492_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.0e-07	46.6
WP_003189082.1\|428572_430075_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	5.5e-85	39.4
WP_014717200.1\|430218_430935_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_014717201.1\|431031_432309_+	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA
WP_038449166.1\|432401_433307_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	1.7e-09	30.0
WP_003172217.1\|433303_433630_+	hypothetical protein	NA	NA	NA	NA
WP_014717203.1\|433781_434138_+	hypothetical protein	NA	NA	NA	NA
WP_003189093.1\|434629_435415_-	OmpA family protein	NA	NA	NA	NA
WP_003189094.1\|435471_435897_-	DUF4398 domain-containing protein	NA	NA	NA	NA
WP_014717206.1\|436180_436525_-	hypothetical protein	NA	NA	NA	NA
WP_038449168.1\|436724_439370_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_003189104.1\|439650_440298_+	adenylate kinase	A0A2K9L833	Tupanvirus	8.6e-11	32.5
WP_014717208.1\|440388_441075_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA

DBSCAN-SWA_2

502304 : 507288

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014717247.1\|502304_503054_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.5e-62	49.4
WP_003189211.1\|503053_503731_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
WP_069868310.1\|503940_504777_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	1.1e-05	33.3
WP_003189214.1\|504883_505891_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|506123_506333_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_003189215.1\|506721_507288_+	dCTP deaminase	S5VM63	Pseudomonas_phage	3.7e-74	73.3

DBSCAN-SWA_3

2413752 : 2481441

Pseudomonas_phage(59.38%)

head,holin,transposase,integrase,tail

attL 2422831:2422890|attR 2480475:2480587

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019821501.1\|2413752_2414700_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014718866.1\|2415050_2416868_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_014718867.1\|2416869_2418981_-	TonB-dependent receptor	NA	NA	NA	NA
WP_019816804.1\|2419116_2419386_-	hypothetical protein	NA	NA	NA	NA
WP_014718869.1\|2419519_2420260_-	hypothetical protein	NA	NA	NA	NA
WP_014718870.1\|2420454_2420652_-	hypothetical protein	NA	NA	NA	NA
WP_014718871.1\|2420744_2421146_-	hypothetical protein	NA	NA	NA	NA
WP_014718872.1\|2421275_2421692_-	inhibitor of vertebrate lysozyme family protein	NA	NA	NA	NA
WP_019816803.1\|2422038_2422815_+	hypothetical protein	A0A2K9VHE7	Pseudomonas_phage	3.9e-26	33.3
2422831:2422890	attL	NA	NA	NA	NA
WP_019816802.1\|2423145_2423355_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	1.0e-10	55.4
WP_058410384.1\|2423442_2423799_+	hypothetical protein	A0A2H4IZV2	uncultured_Caudovirales_phage	4.2e-28	56.3
WP_058410383.1\|2423864_2424884_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.0e-18	30.3
WP_019816799.1\|2424902_2425109_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	2.8e-24	80.3
WP_019816798.1\|2425120_2425378_-	hypothetical protein	A0A0U4B0B7	Pseudomonas_phage	6.6e-23	70.9
WP_019816797.1\|2425374_2425746_-	hypothetical protein	J7HXL1	Pseudomonas_phage	1.9e-15	44.9
WP_019816796.1\|2425745_2426171_-	cell wall hydrolase	A0A1B0VMI2	Pseudomonas_phage	8.0e-74	90.8
WP_019816795.1\|2426227_2426482_-	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	7.2e-14	51.4
WP_014717932.1\|2426478_2426769_-	hypothetical protein	A0A0A0YUD8	Pseudomonas_phage	3.3e-15	45.0
WP_019816794.1\|2426765_2427563_-	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	2.4e-31	48.6
WP_081339073.1\|2427618_2428548_-	hypothetical protein	NA	NA	NA	NA
WP_019816793.1\|2428520_2428826_-	hypothetical protein	NA	NA	NA	NA
WP_069868561.1\|2428827_2432829_-	DUF1983 domain-containing protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	72.4
WP_069868564.1\|2432888_2433482_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	1.8e-100	95.9
WP_069868566.1\|2433537_2433990_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	3.9e-63	93.9
WP_069868568.1\|2433986_2434322_-	hypothetical protein	NA	NA	NA	NA
WP_069868570.1\|2434425_2434764_-	hypothetical protein	NA	NA	NA	NA
WP_019816788.1\|2434957_2435287_-	hypothetical protein	NA	NA	NA	NA
WP_034135906.1\|2435803_2436058_-	hypothetical protein	A0A0S2SYE8	Pseudomonas_phage	3.2e-14	57.0
WP_034135907.1\|2436129_2436516_+	hypothetical protein	NA	NA	NA	NA
WP_069868574.1\|2436502_2437303_-	C40 family peptidase	A0A1B0VP68	Pseudomonas_phage	4.3e-137	88.3
WP_069868576.1\|2437305_2438058_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	2.8e-138	91.6
WP_058409918.1\|2438067_2438406_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	1.1e-54	83.9
WP_069868578.1\|2438405_2441447_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	4.2e-201	43.3
WP_093114111.1\|2441474_2441717_-	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	4.4e-21	57.3
WP_069868580.1\|2441794_2442175_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	2.5e-26	49.6
WP_014717917.1\|2442177_2442849_-\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	3.6e-44	41.9
WP_069868582.1\|2442918_2443338_-	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	9.0e-62	86.9
WP_069868584.1\|2443334_2443931_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	2.4e-52	52.8
WP_069868586.1\|2443927_2444296_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.4e-58	94.2
WP_069868588.1\|2444342_2444537_-	hypothetical protein	NA	NA	NA	NA
WP_069868590.1\|2444574_2445078_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.1e-87	96.4
WP_069868592.1\|2445137_2445725_-	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	1.7e-74	78.1
WP_069868594.1\|2445771_2446734_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	6.5e-164	90.3
WP_019816770.1\|2446746_2447475_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.6e-125	97.1
WP_074059153.1\|2447567_2448023_+	hypothetical protein	NA	NA	NA	NA
WP_019816769.1\|2447987_2449082_-\|head	phage head morphogenesis protein, SPP1 gp7	A0A1B0VMF3	Pseudomonas_phage	1.9e-188	94.5
WP_019816768.1\|2449056_2450475_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.3e-265	93.8
WP_019816767.1\|2450471_2451773_-	hypothetical protein	A0A1B1P9C9	Acinetobacter_phage	6.7e-148	59.7
WP_019816766.1\|2451759_2452221_-	DUF2280 domain-containing protein	A0A0S2SY97	Pseudomonas_phage	7.4e-49	77.2
WP_069868598.1\|2452252_2452876_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	3.7e-104	87.0
WP_019816764.1\|2453323_2453764_+	hypothetical protein	NA	NA	NA	NA
WP_032872094.1\|2453780_2453972_-	hypothetical protein	NA	NA	NA	NA
WP_019816762.1\|2454345_2454642_-	hypothetical protein	A0A291LAS5	Pseudomonas_phage	3.9e-11	35.6
WP_069868600.1\|2454699_2455029_-\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	3.4e-32	62.6
WP_139271882.1\|2455244_2455751_-	hypothetical protein	NA	NA	NA	NA
WP_019816760.1\|2455759_2455945_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.1e-11	86.8
WP_069868603.1\|2456666_2457302_-	hypothetical protein	A0A0U1VZM0	Pseudomonas_phage	7.8e-65	63.4
WP_069868605.1\|2457298_2457814_-	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	1.8e-35	45.0
WP_044483149.1\|2457810_2458608_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	3.4e-94	68.1
WP_069868607.1\|2458594_2459509_-	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	5.6e-48	67.2
WP_081339074.1\|2459505_2460093_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	2.3e-39	66.9
WP_069868609.1\|2460094_2460943_-	Rha family transcriptional regulator	A0A2H4J111	uncultured_Caudovirales_phage	2.4e-53	68.0
WP_069868611.1\|2461078_2461504_-	hypothetical protein	NA	NA	NA	NA
WP_069868613.1\|2461584_2461797_-	Rha family transcriptional regulator	H2BD64	Pseudomonas_phage	2.0e-17	69.2
WP_019816751.1\|2461879_2462548_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	1.2e-44	47.0
WP_069868615.1\|2462826_2463135_+	hypothetical protein	NA	NA	NA	NA
WP_069868617.1\|2463276_2463690_+	hypothetical protein	NA	NA	NA	NA
WP_068967253.1\|2463757_2464213_-	hypothetical protein	B9UDL3	Salmonella_phage	5.8e-22	45.3
WP_056847751.1\|2464442_2464694_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_069868619.1\|2465124_2465364_+	hypothetical protein	NA	NA	NA	NA
WP_069868621.1\|2465436_2465652_+	hypothetical protein	NA	NA	NA	NA
WP_069868623.1\|2465792_2466059_+	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	7.1e-12	49.4
WP_069868625.1\|2466036_2466267_+	hypothetical protein	NA	NA	NA	NA
WP_069868627.1\|2466263_2466491_+	hypothetical protein	NA	NA	NA	NA
WP_069868629.1\|2466594_2467710_+	hypothetical protein	NA	NA	NA	NA
WP_069868631.1\|2467763_2468756_+	recombinase RecT	A0A193GYL3	Enterobacter_phage	6.4e-66	55.3
WP_155766227.1\|2468752_2469415_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	1.2e-31	39.8
WP_069868635.1\|2469417_2469660_+	hypothetical protein	A0A2H4J1H1	uncultured_Caudovirales_phage	7.3e-16	63.8
WP_069868637.1\|2469656_2470127_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	8.8e-74	88.1
WP_069868639.1\|2470196_2470679_+	hypothetical protein	A0A1B0VMB5	Pseudomonas_phage	3.0e-69	84.8
WP_069868641.1\|2470704_2471526_-	hypothetical protein	S5W9H2	Leptospira_phage	4.3e-07	37.3
WP_069868643.1\|2471634_2472642_+	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	1.2e-123	66.3
WP_069868644.1\|2472691_2472892_-	hypothetical protein	NA	NA	NA	NA
WP_155766218.1\|2473102_2473738_-	hypothetical protein	NA	NA	NA	NA
WP_069868646.1\|2473784_2475275_+	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	1.5e-106	47.5
WP_155766219.1\|2475265_2475721_-	hypothetical protein	NA	NA	NA	NA
WP_081339075.1\|2475802_2476078_+	hypothetical protein	NA	NA	NA	NA
WP_155766220.1\|2476100_2476385_+	DUF4406 domain-containing protein	S5VWA8	Mycobacterium_phage	1.1e-15	52.5
WP_056786242.1\|2476381_2476831_+	hypothetical protein	H6WRY2	Salmonella_phage	4.7e-16	63.1
WP_069868652.1\|2477232_2477634_+	HNH endonuclease	A0A1P8DTS4	Salmonella_phage	6.9e-27	46.2
WP_069868654.1\|2477683_2478448_+	hypothetical protein	A0A1J0GVP2	Pseudoalteromonas_phage	9.4e-49	48.7
WP_069868959.1\|2478483_2478726_-	hypothetical protein	A0A2H4J1H6	uncultured_Caudovirales_phage	3.0e-41	98.8
WP_069868656.1\|2478851_2479082_+	hypothetical protein	A0A2H4J1L2	uncultured_Caudovirales_phage	4.7e-20	80.6
WP_069868960.1\|2479093_2479330_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	8.2e-28	73.1
WP_069868658.1\|2479334_2480399_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	4.4e-145	75.2
WP_003192030.1\|2480769_2481441_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.3e-107	94.2
2480475:2480587	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2502776 : 2508995

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003192069.1\|2502776_2503169_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.3e-58	86.2
WP_014718891.1\|2503170_2503521_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.6e-38	67.8
WP_014718892.1\|2503520_2503799_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.4e-26	58.6
WP_014718893.1\|2503795_2504131_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	8.0e-45	78.4
WP_014718894.1\|2504127_2505129_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-168	86.3
WP_038450514.1\|2505217_2506213_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_014718896.1\|2506319_2507714_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_019816715.1\|2507714_2508995_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	53.5

DBSCAN-SWA_5

4366865 : 4416950

Tupanvirus(16.67%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014720226.1\|4366865_4367366_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_020302148.1\|4367537_4368434_+	acyltransferase	NA	NA	NA	NA
WP_130175537.1\|4368467_4368746_-	hypothetical protein	NA	NA	NA	NA
WP_020302147.1\|4368919_4369492_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_019817428.1\|4369628_4370087_+	hypothetical protein	NA	NA	NA	NA
WP_014720230.1\|4370282_4371482_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	29.7
WP_014720231.1\|4371665_4372523_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_019817430.1\|4372648_4373281_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_019817431.1\|4373417_4376435_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_003194855.1\|4376431_4376734_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003176546.1\|4376749_4378000_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_017738444.1\|4378022_4379276_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.7e-100	52.7
WP_038451785.1\|4379512_4380241_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_014720235.1\|4380331_4381372_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_014720236.1\|4381565_4381766_+	hypothetical protein	NA	NA	NA	NA
WP_014720237.1\|4382351_4383452_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_069868813.1\|4383734_4385030_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_014720239.1\|4385884_4386097_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_038451788.1\|4386148_4387369_+	chitin-binding protein	Q9PYT6	Xestia_c-nigrum_granulosis_virus	8.3e-23	32.9
WP_014720241.1\|4387442_4388213_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_014720242.1\|4388223_4389444_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_019817451.1\|4389443_4391387_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_003194876.1\|4391524_4393585_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_005792152.1\|4393600_4394131_-	hypothetical protein	NA	NA	NA	NA
WP_014720245.1\|4394209_4395187_-	membrane dipeptidase	NA	NA	NA	NA
WP_014720247.1\|4395405_4395807_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_032902308.1\|4395850_4396813_-	tyrosinase family protein	NA	NA	NA	NA
WP_014720249.1\|4397003_4397420_+	DUF3010 family protein	NA	NA	NA	NA
WP_038451791.1\|4397451_4398630_-	ATP-binding protein	NA	NA	NA	NA
WP_032902306.1\|4398698_4399643_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_032902304.1\|4399838_4400783_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038451795.1\|4400871_4401759_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_014720254.1\|4401834_4402800_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_014720255.1\|4402902_4403397_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_014720256.1\|4403620_4403884_+	hypothetical protein	NA	NA	NA	NA
WP_003194907.1\|4403971_4405075_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_014720257.1\|4405603_4406980_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_019817457.1\|4407396_4408344_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003194913.1\|4408413_4409259_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_014720259.1\|4409255_4410434_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-26	36.8
WP_014720260.1\|4410591_4412583_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.5e-18	26.4
WP_003194919.1\|4412915_4413509_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_014720261.1\|4413619_4415092_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_014720262.1\|4415246_4416950_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.9e-50	30.3

DBSCAN-SWA_6

4479578 : 4490069

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019817747.1\|4479578_4479818_-	hypothetical protein	B5TK57	Pseudomonas_phage	3.5e-10	56.1
WP_005792245.1\|4480252_4480540_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	7.1e-18	50.6
WP_003195048.1\|4480676_4481132_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_038451839.1\|4481124_4486944_-	response regulator	W8CYM9	Bacillus_phage	3.7e-12	35.9
WP_038451842.1\|4487119_4489171_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.3e-19	40.3
WP_014720319.1\|4489167_4489692_-	type IV pilus biogenesis protein PilI	Q56AR1	Bacillus_thuringiensis_phage	2.0e-05	33.8
WP_014720320.1\|4489703_4490069_-	response regulator	W8CYM9	Bacillus_phage	1.1e-12	33.3

DBSCAN-SWA_7

5126306 : 5137464

Pseudomonas_phage(83.33%)

tail,integrase

attL 5130663:5130676|attR 5140042:5140055

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069868864.1\|5126306_5126891_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	6.5e-58	62.8
WP_069868866.1\|5126887_5127466_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	3.0e-71	71.7
WP_069868868.1\|5127474_5127855_-	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	3.7e-30	53.7
WP_069868870.1\|5127961_5128570_-	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	5.6e-105	94.1
WP_069868872.1\|5128566_5128875_-	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	9.0e-51	95.1
WP_069868874.1\|5129211_5131011_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	0.0e+00	99.0
5130663:5130676	attL	NA	NA	NA	NA
WP_069868876.1\|5130997_5131879_-	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	3.6e-145	86.3
WP_060549775.1\|5131875_5132103_-	hypothetical protein	A0A1B0VRK9	Pseudomonas_phage	2.4e-32	90.7
WP_060549776.1\|5132095_5132383_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	6.6e-40	86.0
WP_069868878.1\|5132489_5132999_-	hypothetical protein	NA	NA	NA	NA
WP_069868880.1\|5132995_5133259_-	hypothetical protein	A0A1B0VMJ2	Pseudomonas_phage	1.6e-24	72.3
WP_069868882.1\|5133731_5134406_-	KilA-N domain-containing protein	H6WRU3	Salmonella_phage	5.6e-29	55.7
WP_069868884.1\|5134402_5134708_-	hypothetical protein	NA	NA	NA	NA
WP_069868886.1\|5134708_5134975_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_069868888.1\|5135092_5136091_-	hypothetical protein	NA	NA	NA	NA
WP_069868890.1\|5136219_5137464_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAT5	uncultured_Caudovirales_phage	2.4e-78	42.9
5140042:5140055	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017296

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection