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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017305 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome 6 crisprs cas3,cas2,cas1,csx1,csx15,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas7,cas8c,cas5,csa3,Cas9_archaeal,cas8e,cse2gr11,cas6e 0 5 2 0

Results visualization

1. NZ_CP017305
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017305_1 1044895-1045749 TypeIII NA
11 spacers
cas2,cas1,csx1,csx15,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017305_2 1048730-1049136 TypeIII NA
5 spacers
cas1,cas2,csx1,csx15,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017305_3 1437016-1437113 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017305_4 1509474-1509574 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017305_5 1568924-1569013 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017305_6 2359906-2362375 TypeI-E I-B,III-A,III-B
40 spacers
cas2,cas1,cas5,cas6e,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017305_6 6.13|2360667|33|NZ_CP017305|CRISPRCasFinder,CRT 2360667-2360699 33 NZ_CP011275 Planctomyces sp. SH-PL62 plasmid pPL62-2, complete sequence 72106-72138 6 0.818
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 NZ_CP013710 Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence 152793-152829 8 0.784
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 57358-57394 8 0.784
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 99923-99959 8 0.784
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 NZ_CP014152 Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence 126556-126592 8 0.784
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 12202-12238 8 0.784
NZ_CP017305_6 6.13|2360667|33|NZ_CP017305|CRISPRCasFinder,CRT 2360667-2360699 33 NZ_CP034813 Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence 185377-185409 8 0.758
NZ_CP017305_6 6.20|2361094|33|NZ_CP017305|CRISPRCasFinder,CRT 2361094-2361126 33 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 433435-433467 8 0.758
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 MN693075 Marine virus AFVG_25M503, complete genome 10676-10712 9 0.757
NZ_CP017305_1 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT 1045079-1045115 37 MN693586 Marine virus AFVG_25M48, complete genome 48119-48155 9 0.757
NZ_CP017305_6 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT 2361155-2361187 33 GU323318 Enterobacteria phage CC31, complete genome 130718-130750 9 0.727
NZ_CP017305_6 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT 2361155-2361187 33 MN617835 Enterobacter phage prasa_myo, complete genome 140295-140327 9 0.727
NZ_CP017305_6 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT 2361155-2361187 33 MG999954 Enterobacter phage myPSH1140, complete genome 140295-140327 9 0.727
NZ_CP017305_6 6.13|2360667|33|NZ_CP017305|CRISPRCasFinder,CRT 2360667-2360699 33 NC_006571 Streptomyces albulus plasmid pNO33 DNA, complete sequence 23648-23680 10 0.697
NZ_CP017305_6 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT 2361155-2361187 33 MN013084 Klebsiella phage vB_KaeM_KaAlpha, complete genome 139413-139445 10 0.697
NZ_CP017305_6 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT 2361155-2361187 33 KJ101592 Enterobacter phage PG7, complete genome 138304-138336 10 0.697
NZ_CP017305_6 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT 2361155-2361187 33 LT614807 Cronobacter phage Pet-CM3-4 genome assembly, chromosome: I 136887-136919 10 0.697
NZ_CP017305_6 6.39|2362254|33|NZ_CP017305|CRISPRCasFinder,CRT 2362254-2362286 33 NC_008043 Ruegeria sp. TM1040 megaplasmid, complete sequence 683660-683692 11 0.667

1. spacer 6.13|2360667|33|NZ_CP017305|CRISPRCasFinder,CRT matches to NZ_CP011275 (Planctomyces sp. SH-PL62 plasmid pPL62-2, complete sequence) position: , mismatch: 6, identity: 0.818

tttccggcatctcgtccgcgacgagcgccagct	CRISPR spacer
aatccggcatctcgtccgcgacgagcctccact	Protospacer
  ************************ .* .**

2. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 8, identity: 0.784

ttcagagataataaatatctttttaaacattatactt-	CRISPR spacer
caaatagataaacaatatctttttaaacatt-tactaa	Protospacer
.  * ******  ****************** ****  

3. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 8, identity: 0.784

ttcagagataataaatatctttttaaacattatactt-	CRISPR spacer
caaatagataaacaatatctttttaaacatt-tactaa	Protospacer
.  * ******  ****************** ****  

4. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 8, identity: 0.784

ttcagagataataaatatctttttaaacattatactt-	CRISPR spacer
caaatagataaacaatatctttttaaacatt-tactaa	Protospacer
.  * ******  ****************** ****  

5. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 8, identity: 0.784

ttcagagataataaatatctttttaaacattatactt-	CRISPR spacer
caaatagataaacaatatctttttaaacatt-tactaa	Protospacer
.  * ******  ****************** ****  

6. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 8, identity: 0.784

ttcagagataataaatatctttttaaacattatactt-	CRISPR spacer
caaatagataaacaatatctttttaaacatt-tactaa	Protospacer
.  * ******  ****************** ****  

7. spacer 6.13|2360667|33|NZ_CP017305|CRISPRCasFinder,CRT matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

tttccggcatctcgtccgcgacgagcgccagct	CRISPR spacer
cggtcagcatctcggccgcgacgatcgccagcc	Protospacer
.  .*.******** ********* *******.

8. spacer 6.20|2361094|33|NZ_CP017305|CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.758

ccccgcgctgggcggggctggtgggctgattgc	CRISPR spacer
gaccggcgggggcggggcgggcgggctgattgc	Protospacer
  ***    ********* **.***********

9. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to MN693075 (Marine virus AFVG_25M503, complete genome) position: , mismatch: 9, identity: 0.757

ttcagagataataaatatctttttaaacattatactt	CRISPR spacer
tttgtagataataaatatctttctaaaaattctgcag	Protospacer
**.. *****************.**** *** *.*  

10. spacer 1.5|1045079|37|NZ_CP017305|CRISPRCasFinder,CRT matches to MN693586 (Marine virus AFVG_25M48, complete genome) position: , mismatch: 9, identity: 0.757

ttcagagataataaatatctttttaaacattatactt	CRISPR spacer
tttgtagataataaatatctttctaaaaattctgcag	Protospacer
**.. *****************.**** *** *.*  

11. spacer 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT matches to GU323318 (Enterobacteria phage CC31, complete genome) position: , mismatch: 9, identity: 0.727

ttcttcagagccagaagatttctgcttctacga	CRISPR spacer
caatatcgcgccagaagatttcttcttttacga	Protospacer
.  * . * ************** ***.*****

12. spacer 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT matches to MN617835 (Enterobacter phage prasa_myo, complete genome) position: , mismatch: 9, identity: 0.727

ttcttcagagccagaagatttctgcttctacga	CRISPR spacer
caatatcgcgccagaagatttcttcttttacga	Protospacer
.  * . * ************** ***.*****

13. spacer 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT matches to MG999954 (Enterobacter phage myPSH1140, complete genome) position: , mismatch: 9, identity: 0.727

ttcttcagagccagaagatttctgcttctacga	CRISPR spacer
caatatcgcgccagaagatttcttcttttacga	Protospacer
.  * . * ************** ***.*****

14. spacer 6.13|2360667|33|NZ_CP017305|CRISPRCasFinder,CRT matches to NC_006571 (Streptomyces albulus plasmid pNO33 DNA, complete sequence) position: , mismatch: 10, identity: 0.697

tttccggcatctcgtccgcgacgagcgccagct	CRISPR spacer
gtggtggcagctcgaccgcgacgagcgccgaag	Protospacer
 *  .**** **** **************..  

15. spacer 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT matches to MN013084 (Klebsiella phage vB_KaeM_KaAlpha, complete genome) position: , mismatch: 10, identity: 0.697

ttcttcagagccagaagatttctgcttctacga	CRISPR spacer
caatatcacgccagaagatttcttcttttacga	Protospacer
.  * . . ************** ***.*****

16. spacer 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT matches to KJ101592 (Enterobacter phage PG7, complete genome) position: , mismatch: 10, identity: 0.697

ttcttcagagccagaagatttctgcttctacga	CRISPR spacer
caatatcacgccagaagatttcttcttttacga	Protospacer
.  * . . ************** ***.*****

17. spacer 6.21|2361155|33|NZ_CP017305|CRISPRCasFinder,CRT matches to LT614807 (Cronobacter phage Pet-CM3-4 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.697

ttcttcagagccagaagatttctgcttctacga	CRISPR spacer
caatatcacgccagaagatttcttcttttacga	Protospacer
.  * . . ************** ***.*****

18. spacer 6.39|2362254|33|NZ_CP017305|CRISPRCasFinder,CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.667

ttttatttcagtcaccagcaccggctccgtctc	CRISPR spacer
cagacgatcagtctccagcaccggcgccgtcat	Protospacer
.      ****** *********** ***** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 326526 : 335346 7 Enterobacteria_phage(33.33%) tRNA NA
DBSCAN-SWA_2 1893226 : 1954285 59 Staphylococcus_phage(40.0%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage