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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015223 Bacillus subtilis strain HRBS-10TDI13 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP015222 Bacillus subtilis strain HRBS-10TDI13 chromosome, complete genome 2 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 16 0

Results visualization

1. NZ_CP015222
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015222_1 981521-981626 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015222_2 3048795-3048902 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP015222_2 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder 3048819-3048878 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3048819|60|NZ_CP015222|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 655705 : 749433 101 uncultured_Caudovirales_phage(27.08%) integrase,capsid,terminase,portal,coat,tail,plate,transposase,tRNA,head,protease,holin attL 666089:666107|attR 709350:709368
DBSCAN-SWA_2 752763 : 761129 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 808787 : 875022 55 Tupanvirus(20.0%) transposase,coat NA
DBSCAN-SWA_4 1269205 : 1317173 54 Planktothrix_phage(44.44%) tRNA,transposase,coat NA
DBSCAN-SWA_5 1359200 : 1439296 85 uncultured_Caudovirales_phage(26.83%) terminase,portal,transposase,plate,tRNA,holin NA
DBSCAN-SWA_6 1867434 : 1964793 101 Bacillus_phage(56.0%) terminase,coat,transposase,tRNA,protease NA
DBSCAN-SWA_7 2100175 : 2107408 9 Bacillus_phage(85.71%) holin NA
DBSCAN-SWA_8 2324511 : 2330606 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_9 2580821 : 2623885 47 uncultured_Caudovirales_phage(25.0%) coat,transposase,holin NA
DBSCAN-SWA_10 2703075 : 2756547 56 uncultured_Mediterranean_phage(12.5%) tRNA,protease,coat NA
DBSCAN-SWA_11 3012209 : 3063201 44 Staphylococcus_phage(20.0%) transposase,coat,holin NA
DBSCAN-SWA_12 3195450 : 3292160 114 Bacillus_phage(37.78%) integrase,capsid,terminase,coat,portal,tail,transposase,plate,head,protease,holin attL 3236142:3236163|attR 3273422:3273443
DBSCAN-SWA_13 3373927 : 3441493 80 Bacillus_phage(65.22%) integrase,capsid,terminase,portal,tail,transposase,plate,head,protease,holin attL 3384995:3385017|attR 3424658:3424680
DBSCAN-SWA_14 3782359 : 3803098 19 Shigella_phage(25.0%) bacteriocin,tRNA,transposase NA
DBSCAN-SWA_15 3813110 : 3854379 40 Enterobacteria_phage(20.0%) tRNA,protease,coat NA
DBSCAN-SWA_16 3893112 : 3953348 56 Streptococcus_phage(30.77%) lysis,transposase,tRNA,protease,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage