CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015948	Legionella pneumophila strain E2_N plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP015947	Legionella pneumophila strain E2_N chromosome, complete genome	0 crisprs	RT,PD-DExK,DEDDh,DinG,cas3,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

918835 : 925675

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946569.1\|918835_919612_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.3e-57	48.2
WP_010946570.1\|919604_920639_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.5e-75	47.6
WP_010946571.1\|920616_921195_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-55	53.2
WP_010946572.1\|921228_921954_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_010946573.1\|921950_922460_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_010946574.1\|922440_923010_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_011213328.1\|923006_923534_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946576.1\|923547_924510_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_010946577.1\|924877_925675_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-21	33.8

DBSCAN-SWA_2

1308307 : 1314244

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946911.1\|1308307_1309381_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.8e-30	27.8
WP_010946912.1\|1309365_1309980_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.5e-22	38.4
WP_010946913.1\|1309976_1311185_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.4e-99	48.7
WP_010946914.1\|1311192_1311660_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-23	49.1
WP_010946915.1\|1311785_1313423_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.3
WP_010946916.1\|1313419_1314244_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-53	43.9

DBSCAN-SWA_3

2217023 : 2227147

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010947735.1\|2217023_2218712_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.0e-16	30.4
WP_015444337.1\|2218843_2219851_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010947737.1\|2219974_2221300_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.4e-47	31.2
WP_010947738.1\|2221318_2222467_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-126	58.5
WP_015444336.1\|2222675_2223788_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.9e-51	35.2
WP_010947740.1\|2223883_2225023_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.6e-23	26.9
WP_015444335.1\|2225212_2227147_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6

DBSCAN-SWA_4

2545394 : 2608663

Erysipelothrix_phage(18.75%)

protease,transposase,tRNA,integrase

attL 2551302:2551348|attR 2607334:2607380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010948063.1\|2545394_2546396_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.8e-91	50.7
WP_010948064.1\|2546600_2546840_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_010948065.1\|2547042_2547486_+	lpg2359 family Dot/Icm T4SS effector	A0A292GL36	Xanthomonas_phage	6.3e-21	43.8
WP_014842314.1\|2547494_2549228_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-59	35.5
WP_011216252.1\|2549314_2551180_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.3e-35	32.8
2551302:2551348	attL	NA	NA	NA	NA
WP_187297743.1\|2551438_2552566_-\|integrase	site-specific integrase	A0A059VF45	Pseudomonas_phage	2.2e-86	47.3
WP_061466610.1\|2552946_2553132_+	hypothetical protein	NA	NA	NA	NA
WP_061466612.1\|2553124_2553901_+	methylase	NA	NA	NA	NA
WP_061634671.1\|2554034_2554850_+	hypothetical protein	NA	NA	NA	NA
WP_061466974.1\|2554891_2556202_-	hypothetical protein	NA	NA	NA	NA
WP_061466975.1\|2556331_2557813_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	9.4e-29	24.8
WP_061466976.1\|2557966_2558209_+	hypothetical protein	NA	NA	NA	NA
WP_061466977.1\|2558443_2558638_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	4.8e-18	60.3
WP_061634672.1\|2558665_2561941_+	DEAD/DEAH box helicase family protein	A0A2K5B2B9	Erysipelothrix_phage	4.8e-235	42.8
WP_061466985.1\|2561933_2562596_+	DUF4391 domain-containing protein	NA	NA	NA	NA
WP_061634673.1\|2562615_2564571_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	2.0e-103	36.1
WP_061466981.1\|2564588_2567621_+	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	1.7e-130	33.4
WP_061634674.1\|2567696_2569496_+	DUF4209 domain-containing protein	NA	NA	NA	NA
WP_061466952.1\|2569492_2570176_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	6.5e-17	33.3
WP_061466938.1\|2570377_2571262_+	hypothetical protein	NA	NA	NA	NA
WP_042234550.1\|2571281_2571593_+	Vir protein	NA	NA	NA	NA
WP_042234461.1\|2571609_2571882_+	carbon storage regulator	A0A0U1UNS3	Pseudomonas_phage	5.0e-05	41.8
WP_042234463.1\|2571909_2572875_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_042234466.1\|2572886_2573264_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_061466939.1\|2573260_2573560_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_061466940.1\|2573556_2576091_+	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_061466941.1\|2576087_2576786_+	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_061466942.1\|2576782_2577658_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_061466943.1\|2577660_2578068_+	conjugal transfer protein TrbH	NA	NA	NA	NA
WP_061466944.1\|2578073_2579321_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_061466945.1\|2579332_2580073_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_061466946.1\|2580095_2580308_+	hypothetical protein	NA	NA	NA	NA
WP_061466947.1\|2580312_2581695_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_061466948.1\|2581691_2583581_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_061466949.1\|2583577_2584123_+	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_187297749.1\|2584119_2584284_+	hypothetical protein	NA	NA	NA	NA
WP_061466950.1\|2584276_2586463_+	DUF1738 domain-containing protein	A0A1B1IRD0	uncultured_Mediterranean_phage	1.1e-36	33.9
WP_061634675.1\|2586592_2588188_-	hypothetical protein	NA	NA	NA	NA
WP_061466916.1\|2588497_2590360_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_058450394.1\|2590356_2590710_-	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_058450393.1\|2591103_2591448_+	TraK family protein	NA	NA	NA	NA
WP_058450392.1\|2591447_2592173_+	conjugal transfer protein TraL	NA	NA	NA	NA
WP_061466918.1\|2592172_2592610_+	conjugal transfer protein TraM	NA	NA	NA	NA
WP_061466920.1\|2592857_2593919_-	DUF4116 domain-containing protein	NA	NA	NA	NA
WP_080444600.1\|2594341_2595976_+\|transposase	transposase	NA	NA	NA	NA
WP_040146985.1\|2595930_2596323_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_058450390.1\|2596804_2597047_-	hypothetical protein	NA	NA	NA	NA
WP_061466923.1\|2597289_2599230_+	DUF2779 domain-containing protein	NA	NA	NA	NA
WP_044496813.1\|2599309_2600161_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_044496821.1\|2600157_2600766_-	AbiEi antitoxin N-terminal domain-containing protein	NA	NA	NA	NA
WP_058450388.1\|2601573_2601978_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-08	33.1
WP_080444601.1\|2601935_2602061_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_044496812.1\|2602185_2603238_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_061466925.1\|2603244_2604462_-	MFS transporter	NA	NA	NA	NA
WP_052585449.1\|2604491_2605538_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.5e-25	32.4
WP_061466927.1\|2605539_2606604_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_015444121.1\|2607487_2608663_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.8e-17	23.2
2607334:2607380	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage