CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015951	Legionella pneumophila strain E5_N chromosome, complete genome	0 crisprs	RT,PD-DExK,DEDDh,DinG,cas3,WYL,csa3	0	0	5	0
NZ_CP015952	Legionella pneumophila strain E5_N plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

923190 : 930030

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946569.1\|923190_923967_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.3e-57	48.2
WP_010946570.1\|923959_924994_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.5e-75	47.6
WP_010946571.1\|924971_925550_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-55	53.2
WP_010946572.1\|925583_926309_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_010946573.1\|926305_926815_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_010946574.1\|926795_927365_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_011213328.1\|927361_927889_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946576.1\|927902_928865_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_010946577.1\|929232_930030_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-21	33.8

DBSCAN-SWA_2

1314663 : 1320600

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946911.1\|1314663_1315737_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.8e-30	27.8
WP_010946912.1\|1315721_1316336_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.5e-22	38.4
WP_010946913.1\|1316332_1317541_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.4e-99	48.7
WP_010946914.1\|1317548_1318016_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-23	49.1
WP_010946915.1\|1318141_1319779_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.3
WP_010946916.1\|1319775_1320600_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-53	43.9

DBSCAN-SWA_3

2224137 : 2234261

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010947735.1\|2224137_2225826_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.0e-16	30.4
WP_015444337.1\|2225957_2226965_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010947737.1\|2227088_2228414_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.4e-47	31.2
WP_010947738.1\|2228432_2229581_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-126	58.5
WP_015444336.1\|2229789_2230902_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.9e-51	35.2
WP_010947740.1\|2230997_2232137_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.6e-23	26.9
WP_015444335.1\|2232326_2234261_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6

DBSCAN-SWA_4

2276089 : 2331114

Wolbachia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010947782.1\|2276089_2277541_+\|transposase	IS4-like element ISLpn5 family transposase	Q9JMP3	Wolbachia_phage	6.1e-158	56.8
WP_010947783.1\|2277611_2279132_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.9e-124	48.2
WP_010947785.1\|2279979_2280354_+	hypothetical protein	NA	NA	NA	NA
WP_010947786.1\|2280551_2282159_-	hypothetical protein	NA	NA	NA	NA
WP_015444248.1\|2282161_2282653_-	hypothetical protein	NA	NA	NA	NA
WP_010947788.1\|2282663_2283500_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L1V5	Vibrio_phage	4.9e-67	48.9
WP_010947789.1\|2284092_2285184_-	DUF4917 family protein	NA	NA	NA	NA
WP_010947790.1\|2285415_2291361_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_010947791.1\|2291381_2293274_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_021437030.1\|2293338_2293803_+	hypothetical protein	NA	NA	NA	NA
WP_015444244.1\|2293806_2296527_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_010947793.1\|2296532_2297918_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_010947794.1\|2297914_2298337_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_010947795.1\|2298326_2299109_-	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_010947796.1\|2299101_2300913_-	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_015444243.1\|2300912_2301581_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_010947798.1\|2301596_2302592_-	TraU family protein	NA	NA	NA	NA
WP_010947799.1\|2302588_2303197_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_015444242.1\|2303193_2303529_-	TrbI F-type domain-containing protein	NA	NA	NA	NA
WP_015444241.1\|2303521_2306074_-	type IV secretion system protein TraC	NA	NA	NA	NA
WP_010947801.1\|2306085_2306436_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_015444240.1\|2306449_2307736_-	TraB/VirB10 family protein	NA	NA	NA	NA
WP_010947803.1\|2307737_2308451_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_010947804.1\|2308453_2309017_-	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_010947805.1\|2309020_2309314_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_010947806.1\|2309315_2309618_-	fimbrial protein	NA	NA	NA	NA
WP_010947807.1\|2309632_2309869_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	2.5e-08	52.9
WP_025520140.1\|2309882_2310260_-	hypothetical protein	NA	NA	NA	NA
WP_010947808.1\|2310207_2311092_-	hypothetical protein	NA	NA	NA	NA
WP_015444237.1\|2311264_2311945_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	1.6e-07	28.1
WP_016356978.1\|2312093_2312768_+\|transposase	transposase	NA	NA	NA	NA
WP_010947811.1\|2313216_2313789_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_015444236.1\|2313772_2314270_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_010947813.1\|2314262_2314850_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_010947814.1\|2314854_2316990_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010947815.1\|2317008_2317890_-	sterol desaturase family protein	NA	NA	NA	NA
WP_010947816.1\|2317996_2318143_-	hypothetical protein	NA	NA	NA	NA
WP_010947817.1\|2318334_2318511_+	MAPEG family protein	NA	NA	NA	NA
WP_010947818.1\|2318680_2319178_-	DoxX family protein	NA	NA	NA	NA
WP_010947819.1\|2319167_2319947_-	DUF2063 domain-containing protein	NA	NA	NA	NA
WP_010947820.1\|2319939_2320794_-	DUF692 domain-containing protein	NA	NA	NA	NA
WP_010947821.1\|2320808_2321102_-	DUF2282 domain-containing protein	NA	NA	NA	NA
WP_010947822.1\|2321291_2321813_-	hypothetical protein	NA	NA	NA	NA
WP_015444234.1\|2322117_2322576_-	hypothetical protein	NA	NA	NA	NA
WP_015444232.1\|2323149_2323377_-	hypothetical protein	NA	NA	NA	NA
WP_010947824.1\|2323534_2324056_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_010947825.1\|2324227_2324782_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_010947826.1\|2325215_2325416_+	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_010947827.1\|2325509_2325893_+\|transposase	transposase	NA	NA	NA	NA
WP_010947828.1\|2325946_2326900_-	Abi family protein	A3QSC6	Clostridium_virus	4.8e-34	31.8
WP_015444229.1\|2327409_2328828_+\|transposase	IS4-like element ISLpn3 family transposase	Q9JMP3	Wolbachia_phage	2.3e-56	32.9
WP_010947829.1\|2328860_2330036_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	5.2e-14	21.2
WP_010947830.1\|2330088_2331114_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2628262 : 2691531

Erysipelothrix_phage(18.75%)

protease,transposase,tRNA,integrase

attL 2634170:2634216|attR 2690202:2690248

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010948063.1\|2628262_2629264_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.8e-91	50.7
WP_010948064.1\|2629468_2629708_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_010948065.1\|2629910_2630354_+	lpg2359 family Dot/Icm T4SS effector	A0A292GL36	Xanthomonas_phage	6.3e-21	43.8
WP_014842314.1\|2630362_2632096_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-59	35.5
WP_011216252.1\|2632182_2634048_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.3e-35	32.8
2634170:2634216	attL	NA	NA	NA	NA
WP_187297743.1\|2634306_2635434_-\|integrase	site-specific integrase	A0A059VF45	Pseudomonas_phage	2.2e-86	47.3
WP_061466610.1\|2635814_2636000_+	hypothetical protein	NA	NA	NA	NA
WP_061466612.1\|2635992_2636769_+	methylase	NA	NA	NA	NA
WP_061634671.1\|2636902_2637718_+	hypothetical protein	NA	NA	NA	NA
WP_061466974.1\|2637759_2639070_-	hypothetical protein	NA	NA	NA	NA
WP_061466975.1\|2639199_2640681_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	9.4e-29	24.8
WP_061466976.1\|2640834_2641077_+	hypothetical protein	NA	NA	NA	NA
WP_061466977.1\|2641311_2641506_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	4.8e-18	60.3
WP_061634672.1\|2641533_2644809_+	DEAD/DEAH box helicase family protein	A0A2K5B2B9	Erysipelothrix_phage	4.8e-235	42.8
WP_061466985.1\|2644801_2645464_+	DUF4391 domain-containing protein	NA	NA	NA	NA
WP_061634673.1\|2645483_2647439_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	2.0e-103	36.1
WP_061466981.1\|2647456_2650489_+	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	1.7e-130	33.4
WP_061634674.1\|2650564_2652364_+	DUF4209 domain-containing protein	NA	NA	NA	NA
WP_061466952.1\|2652360_2653044_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	6.5e-17	33.3
WP_061466938.1\|2653245_2654130_+	hypothetical protein	NA	NA	NA	NA
WP_042234550.1\|2654149_2654461_+	Vir protein	NA	NA	NA	NA
WP_042234461.1\|2654477_2654750_+	carbon storage regulator	A0A0U1UNS3	Pseudomonas_phage	5.0e-05	41.8
WP_042234463.1\|2654777_2655743_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_042234466.1\|2655754_2656132_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_061466939.1\|2656128_2656428_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_061466940.1\|2656424_2658959_+	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_061466941.1\|2658955_2659654_+	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_061466942.1\|2659650_2660526_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_061466943.1\|2660528_2660936_+	conjugal transfer protein TrbH	NA	NA	NA	NA
WP_061466944.1\|2660941_2662189_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_061466945.1\|2662200_2662941_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_061466946.1\|2662963_2663176_+	hypothetical protein	NA	NA	NA	NA
WP_061466947.1\|2663180_2664563_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_061466948.1\|2664559_2666449_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_061466949.1\|2666445_2666991_+	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_187297749.1\|2666987_2667152_+	hypothetical protein	NA	NA	NA	NA
WP_061466950.1\|2667144_2669331_+	DUF1738 domain-containing protein	A0A1B1IRD0	uncultured_Mediterranean_phage	1.1e-36	33.9
WP_061634675.1\|2669460_2671056_-	hypothetical protein	NA	NA	NA	NA
WP_061466916.1\|2671365_2673228_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_058450394.1\|2673224_2673578_-	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_058450393.1\|2673971_2674316_+	TraK family protein	NA	NA	NA	NA
WP_058450392.1\|2674315_2675041_+	conjugal transfer protein TraL	NA	NA	NA	NA
WP_061466918.1\|2675040_2675478_+	conjugal transfer protein TraM	NA	NA	NA	NA
WP_061466920.1\|2675725_2676787_-	DUF4116 domain-containing protein	NA	NA	NA	NA
WP_080444600.1\|2677209_2678844_+\|transposase	transposase	NA	NA	NA	NA
WP_040146985.1\|2678798_2679191_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_058450390.1\|2679672_2679915_-	hypothetical protein	NA	NA	NA	NA
WP_061466923.1\|2680157_2682098_+	DUF2779 domain-containing protein	NA	NA	NA	NA
WP_044496813.1\|2682177_2683029_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_044496821.1\|2683025_2683634_-	AbiEi antitoxin N-terminal domain-containing protein	NA	NA	NA	NA
WP_058450388.1\|2684441_2684846_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-08	33.1
WP_080444601.1\|2684803_2684929_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_044496812.1\|2685053_2686106_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_061466925.1\|2686112_2687330_-	MFS transporter	NA	NA	NA	NA
WP_052585449.1\|2687359_2688406_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.5e-25	32.4
WP_061466927.1\|2688407_2689472_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_015444121.1\|2690355_2691531_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.8e-17	23.2
2690202:2690248	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage