CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017479	Flavobacterium gilvum strain EM1308 chromosome, complete genome	9 crisprs	RT,csa3,DEDDh,cas3,PD-DExK,WYL	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017479_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_1

287741-287858

Orphan

Consensus_repeat	Method
CTTAATATCTTAATGGTTCATTTATAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_1

>merge|NZ_CP017479|1|287741-287858|CRISPRCasFinder
CTTAATATCTTAATGGTTCATTTATAATTTTACTCTTCTTATTTTTGACTTTAAGACATTTAGAAAATCAAGCCTTACACTTAATCTTCTTAATATCTTAATAGTTCATTTATAATTT

>NZ_CP017479|1|1|287741-287858|CRISPRCasFinder
CTTAATATCTTAATGGTTCATTTATAATTT	TACTCTTCTTATTTTTGACTTTAAGACATTTAGAAAATCAAGCCTTACACTTAATCTT
CTTAATATCTTAATAGTTCATTTATAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_051877777.1\|283914_286647_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367212
NZ_CP017479.1\|WP_156101346.1\|276797_277460_+\|DUF3826-domain-containing-protein	unknown	unknown	gnl\|CDD\|378985
NZ_CP017479.1\|WP_035637117.1\|303303_304221_-\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|350097
NZ_CP017479.1\|WP_035637138.1\|280166_283691_-\|DUF4982-domain-containing-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP017479.1\|WP_035637130.1\|289191_291945_-\|alpha-L-rhamnosidase	unknown	unknown	gnl\|CDD\|379971
NZ_CP017479.1\|WP_035637119.1\|301348_303226_-\|six-hairpin-glycosidase	unknown	unknown	gnl\|CDD\|372469
NZ_CP017479.1\|WP_035637157.1\|306138_307533_-\|DUF4038-domain-containing-protein	unknown	unknown	gnl\|CDD\|379072
NZ_CP017479.1\|WP_051877779.1\|298338_301149_-\|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl\|CDD\|379971
NZ_CP017479.1\|WP_035637150.1\|269177_270413_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP017479.1\|WP_156101345.1\|292111_293680_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|366513
NZ_CP017479.1\|WP_035637121.1\|296765_298193_-\|acetylxylan-esterase	unknown	unknown	gnl\|CDD\|368448
NZ_CP017479.1\|WP_035637115.1\|304484_306059_-\|glycoside-hydrolase-family-28-protein	unknown	unknown	gnl\|CDD\|227721
NZ_CP017479.1\|WP_051877778.1\|270644_271343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035637148.1\|271570_274336_-\|membrane-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP017479.1\|WP_035637146.1\|274375_274957_-\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|153119
NZ_CP017479.1\|WP_035637135.1\|286790_287684_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP017479.1\|WP_035637144.1\|275066_276323_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP017479.1\|WP_156101347.1\|307614_310740_-\|pectate-lyase	unknown	unknown	unknown
NZ_CP017479.1\|WP_035637140.1\|277567_279982_-\|DUF4982-domain-containing-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP017479.1\|WP_035637123.1\|294089_296555_-\|glycoside-hydrolase-family-95-protein	unknown	unknown	gnl\|CDD\|379625

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_051877777.1\|283914_286647_-\|hypothetical-protein	gnl\|CDD\|367212	pfam02838, Glyco_hydro_20b, Glycosyl hydrolase family 20, domain 2. This domain has a zincin-like fold.	0.00861866
NZ_CP017479.1\|WP_156101346.1\|276797_277460_+\|DUF3826-domain-containing-protein	gnl\|CDD\|378985	pfam12875, DUF3826, Protein of unknown function (DUF3826). This is a putative sugar-binding family.	1.1488e-76
NZ_CP017479.1\|WP_035637117.1\|303303_304221_-\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|350097	cd08983, GH43_Bt3655-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 arabinofuranosidase Bt3655. This glycosyl hydrolase family 43 (GH43)-like family includes the characterized arabinofuranosidases (EC 3.2.1.55): Bacteroides thetaiotaomicron VPI-5482 (Bt3655;BT_3655) and Penicillium chrysogenum 31B Abf43B, as well as Bifidobacterium adolescentis ATCC 15703 beta-xylosidase (EC 3.2.1.37) BAD_1527. It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	1.57977e-77
NZ_CP017479.1\|WP_035637138.1\|280166_283691_-\|DUF4982-domain-containing-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	5.02236e-44
NZ_CP017479.1\|WP_035637130.1\|289191_291945_-\|alpha-L-rhamnosidase	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	5.05902e-127
NZ_CP017479.1\|WP_035637119.1\|301348_303226_-\|six-hairpin-glycosidase	gnl\|CDD\|372469	pfam13088, BNR_2, BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases.	5.70132e-05
NZ_CP017479.1\|WP_035637157.1\|306138_307533_-\|DUF4038-domain-containing-protein	gnl\|CDD\|379072	pfam13204, DUF4038, Protein of unknown function (DUF4038). A family of putative cellulases.	3.00709e-150
NZ_CP017479.1\|WP_051877779.1\|298338_301149_-\|family-78-glycoside-hydrolase-catalytic-domain	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	6.8503e-117
NZ_CP017479.1\|WP_035637150.1\|269177_270413_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	1.30829e-120
NZ_CP017479.1\|WP_156101345.1\|292111_293680_-\|glycoside-hydrolase	gnl\|CDD\|366513	pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.28) is known to recycle trehalose to glucose. Trehalose is a physiological hallmark of heat-shock response in yeast and protects of proteins and membranes against a variety of stresses. This family is found in conjunction with pfam07492 in fungi.	4.47716e-05
NZ_CP017479.1\|WP_035637121.1\|296765_298193_-\|acetylxylan-esterase	gnl\|CDD\|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	3.0654e-05
NZ_CP017479.1\|WP_035637115.1\|304484_306059_-\|glycoside-hydrolase-family-28-protein	gnl\|CDD\|227721	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane].	6.09618e-80
NZ_CP017479.1\|WP_035637148.1\|271570_274336_-\|membrane-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	9.55213e-05
NZ_CP017479.1\|WP_035637146.1\|274375_274957_-\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|153119	cd07910, MiaE, MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	3.87391e-89
NZ_CP017479.1\|WP_035637135.1\|286790_287684_-\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	2.74552e-11
NZ_CP017479.1\|WP_035637144.1\|275066_276323_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.94177e-21
NZ_CP017479.1\|WP_035637140.1\|277567_279982_-\|DUF4982-domain-containing-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	1.25434e-69
NZ_CP017479.1\|WP_035637123.1\|294089_296555_-\|glycoside-hydrolase-family-95-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	2.78278e-85

>NZ_CP017479.1|WP_035637135.1|286790_287684_-|TIM-barrel-protein
MKSTYFKRNDIVLFLAVLCGTFNGTISAQSSKKQQYKVAVCDWMILKRQKLGAFALAGEIKADGIELDMGGLGNRPTFDSKLGDPVERQKFLDASKELNVGISSIAMSGFYAQSFAKRETVTQMVDDCIMTMKNMNVKVAYLPLGTQCDLSKNPELRPIVVERLKWAGKQVGKIGGVIAIETSLNATEEKKLLEEIGSKHIKSSFNFANAVDNGRDIATELKILGKKHLAQIHASNTDNVWLENDKAIDIPKIKKTLDEMKWSGWLIVERSRDVTQVHNVKVNYGANVAYLKKIFQN
>NZ_CP017479.1|WP_051877777.1|283914_286647_-|hypothetical-protein
MKYLSLLFLGLCATFATAQNITIVRDANAPRTEFGAQKLSEAVTAKGFKVAFVDKAPKKSNDKVIIIGEKGTDFWKQNSKNTVIDDSKLTKKEGFQIRSNKNFIFIEGTDATGVLYGALELTDRIKSSGEIPSEINIEDSPEMVLRGSCIGLQKPVYLPGRDVYEYPYTPESFPWFYDKKLWTEYLDMMVENRLNSLYLWNGHPFASLVKLKDYPFALEVSEEDFKKNEEIFKFLTEEANKRGIWVIQMFYNIIVSKPFAEHYGIKTQDRSRPITPEIADYTRKSIAAFIEKYPNVGLLVCLGEAINTIDDDVEWFTKTIIPGVQDGMKALGQTQEPPIILRSHDTDAPAVMAKALPIYKNLYTMSKYNGESLTTYTPGGPWGETHKQLSSLGSIHIENVHILANLEPFRYGSPDFIQKTVNAMHTAHGANALHLYPQASYWDWPYTADKTKTGERLLEMDRDWIWYKAWARYAWNCKRDRDQEIKYWAQLLTDKYGTNEEASNNIRKAYEEAGEIAPKTLRRFGITEGNRQTLLLGMFESQLVNPSKWRVYPGFHESCGPVGELLLEYAKKEWNKEPHVGELPTQIIAEITEHGRLAVEAIDKAEASVTRDKEEFLRLKNDMHAYKAFADFFSEKVKAAILVLRYSYSNDISDLDKALPHLEKSIECYQTLVNLTKDHYLYANSMQTAQRRIPIGGDDGNNKTWAELLPHYERELANFKRNLELLKSSKDGKIVTKDGKPWKTAEVTLLSESKGAYAVKNGTKVYNTPISEFTKVAPELQNLKGIAFDETEQNEKGTHLKFKNTKAVKLVVGYFNSDQKRFLFPPSLETDAAGNAYGQAEVILASAMNLKELPRINVHTYTFQPGENKLDLGKGRVLILGFIDANQTITTRDVGYIDEGEKGAVDWLFY
>NZ_CP017479.1|WP_035637138.1|280166_283691_-|DUF4982-domain-containing-protein
MKKAVFFIVSFFSSFCMVFSQSNKESAGFRKEVSLNSSWETIILDNPSQEETFVKNLKTNADWEKVNVPHNWDQYYGFRRTKHGNLHGIAWYHKTLKLDKEYASKKLFLFFEGVSSYATVWVNGKKVGEHKGGRTTFTLNITNAVSFEKENNIVVKASHPSFIADLPWVCGGCSGEWGFSEGSQPMGIFRPVTLVVTNAIRIEPFGVHIWNDKATSKEKAVLNVTAEIKNYGKSDRYLTIVNTLYDKDGKKVATSKSETNSFVGKTNEIAQSLPEILQPKLWSPANPYLYQLVTTILEKGKKIDELKTPYGIRWVSWPVSRDGKDNRFFINDEPLFINGTCEYEHLIGNSHSFSKEQIHSRIEQIKASGFNAFREAHQPHNLEYQKELDENGILFWSQFSAHIWYDTPEFKENFKTLLREWIKERRNSPSVVMWGLQNESTIPAAFAEECTKIIREMDPMSASQRIVTTCNGGEGTDWNVVQNWSGTYGGDPFNYDVEMSKQLLNGEYGAWRSHDLHTEGEFDQKGTLSENRFSQLMEIKVREAESVKDKIAGQFNWLFASHENPGRVQNGEGFRDIDKVGPVNYKGLFSIWGEPLDAYYMYRANYVSNKTNPMVYIVSHTWTNRWASAGIKSGIDVYSNCDEVELFNNVDKTSLGRLKNPGLGQHFQWNNVMIKYNVLYAVGYLNGKAVAKDYIILNGLPKAPNFSVLETENDVFLKPAKDYNYIYRVNCGGGQMTDAFGNTWQADVHKSGDGTWGSLSWTDNFKQLPDFYASQRSTFDPIAGTNDWKLFQDFRYGIDKLRYEFPAPDGEYLVELYFIEPWYGTGGGLDCKGWRLFDVAINDKVVLKDFDIWNQVGHDKALKKTFVVKSKNGKIVISFPNVKASQAIISAIAIATKDKTVKGAPASSGNIQNVVIDTEDKTACKIDSWLDINSVQYSNGNVFFTKLPSEVFGAEYLQFPVNAKTTGSFETKEDSDIYLLVPRKPKDSIPGYKEIEGSARNSEGIEFTVFQKKVKKGEKVFFENFESLSSVAVVPTYDMGEKDDSRPVVLIEAETAKTDGSGIQKANFKKSDYVEFTQKTKNSIQFEVKPGVAGIYLMRFRYMNRNETPLKVKFKMEDAYGILMRNDTIEFPPSPEKWKVLNTTSGGYINAGTYTITLESEDMQGLLLDSFEFQ
>NZ_CP017479.1|WP_035637140.1|277567_279982_-|DUF4982-domain-containing-protein
MVKKTGIVLVLLLSIASFSQTKKARIVEDFNKNWNFKLGDYPQAINANFNIADWRTLNLPHDWSIEGAFDKDSKTKQAQGFLPAGKGWYRKVFTIPANWKNKAISIEFDGVFKNSEVFINGHSLGIRPNGYISFGYELSQYLYFGKPNVIAVKVDNDAQPNSRWYTGSGIYRNVRLVVSEKLHVAKWGTYVTTPEVSAQKASVNCEVTIDNENASAKEFKLVTSIVNANNVEVANSTSIEKFEPKTSAKKVHNLTVNQPKLWDTENPYMYKVLTRIYENSKLIDNYETPLGFRFFSFDAEKGFSLNGKPTKILGVCLHHDNGALGAVENIHAVKRKLKILKEMGANAIRMAHNPHSLEMMQLCDEMGFIVQDEAFDVWKKKKVTNDYHKDWDAWHKQDLEDFIKRDRNHPSVMMWSIGNEIREQFDSTGIAITRELAQIVKSLDKTRPVTSALTENVIEKNFIYQSGALDLLGFNYKHEDYKDFPVRFKGQKILASESVSALETRGHYDQPSDVIKTWPPKYGAPFDGNADWTVSAYDQVKSYWGATHEDNWKTIKKQDFMAGTFIWTGFDYIGEPDPYPYPARSSYFGIIDLAGFPKDVYYMYQSEWTTKPVLHIFPHWNWTAGQEVDVWAYYNNADEVELFLNGKSLGKKSKQNDDLHISWRVKFEPGTIKAISRKGGKVVLEKEIKTAGEASKIALVANKKTLKNDSYDLVYVTVSITDKDGNLVPNANNLIDFEVIGGGKLVGVDNGYQAGWDSFKANSCKVFNGKCIAIIQSNGKKENIQLKASTGIDILAKAIEIKVE
>NZ_CP017479.1|WP_156101346.1|276797_277460_+|DUF3826-domain-containing-protein
MKNKRMKALLLIGFLIINTVIRAQSVSTAEEDITKAKEWITSLSLNDSSKENRLIQVVATHLSTIKDWHNTHPASTVPAGINPLDGKPLSELHRQIIADSAIPSTTHESLMSGLRKDLSEDQVALVLDKYTIGKVAFTMKGYQSIVPDMTATETAEIQKLLEKAREQAVDYKSMKEISAIFEIYKTQAEQYLNNHGRNWRQMYGDYTKKIKAEKEAKKQK
>NZ_CP017479.1|WP_035637144.1|275066_276323_+|glycosyltransferase-family-4-protein
MNHIQTVLIIGFVWPEPNSSAAGGRMLQLITQFQQQGYSITFASPAMDSDFMVDLAALNVDKKTIALNCSSFDIFVKELNPAIVLFDRFMIEEQFGWRVAENCPNALRILDTEDLHCLRSARQKAFKAHRDFVITDTLKEEVAKREIASILRCDLSLIISEFEMELLEKIFKIDSQLLYYLPFLLEPISQSTFEKLPSFEERNDFVFIGNFLHEPNWNAVQYLKESIWPLIRKQLPNTNLNIYGAYPSQKALQLHQPKDGFYIKGRANDANEVVQNARIVLAPLRFGAGIKGKLIEAIQCGTPSITTSIGAESMQGNLPWNGFITDDVTEFTKAAAELYMDKQLWTTAQQNGIAIINQRYSKEKFENDFAAKIQFLLANLSQHRLDNFMGALLQHHTLTSTKYMSRWIETKNSKEKKN
>NZ_CP017479.1|WP_035637146.1|274375_274957_-|tRNA-(ms[2]io[6]A)-hydroxylase
MLGLKLATDPRWVNIVETNIEEILTDHAWCEQKAASNAISLIAYNSELEELVTELLVIAREELEHFQLVHNLIKSRGLTLGRERKDHYVNELFKFMKKDGSRKDALVDRLLFSAMIEARSCERFKVLSENIEDPELAKFYRDLMISEAGHYTTFLGFARKYVDNFDVDKRWKEWIEYETSIIVNYGKNETVHG
>NZ_CP017479.1|WP_035637148.1|271570_274336_-|membrane-protein
MAATNYKSIGLKILKYVGITLVVLLALMFIVPLAFSDKIRDQVKKTANERLNGELNYTDANVSFFTHFPSLTLSLTDFKLNGSAPFQNEKFIAADEVAFGINLSSLVFGKTIKIDEIFLSNSLINVKVNEKGEANYNVYKGEKETGAKEKESETGIKLEEIQINNSKLVYDDQSTDVHIDAFGFDYLGNGDLSQAIFELHSKIKIGKLNLIYAKEPYLMNKKVDGELITKINTNSLSFVFEENDLSINKLLVDFKGKFDFLKDGYNMDFVVKSYKSDLYELFTAFPPKYITWLKDAELNGKIDLLLTLKGEYIASKKIAPDLNLDFKVKDGFVNYKKSAFPVSNLNMDISTKVPSLNPELLIVDARNLSLNIEKNYLKTQLKMNGLSAPDVDLVLDSKIDLEKLNRALGVSNIELKGMLVSDLKAKGKFDKKQRLFPNANGTVDLKNGFVKTPYYPNPITDINVVSKINNQKGTYDGLSVVLDPAGFTFEGEPFWVKADLKNFDNLNYDIKAKGVLNISKIYKVFSQKGLDVDGYVKADLELTGNQSDAEKGNYAKLNNKGTLEVRNINVVTEYLPKSLLIKEGIFRFNQDKMSFNTFLASYGESDFKMNGYLQNVFNFISSKNGVLRGAFTLNSKYINVDEFMSSTAVATAPEASTNGTPNATPPPTAQQSGVILVPHNLDLQFYATAHKINYQGLTLQDGKGAVKMKNGKILMQNTGFNLIGCNVMMNAAYEGLTPQKALFEYQINAKEFDIKRAYKQVKMFREMASAAENAEGIVSLDYKIKGRLDQQMMPVYPSLIGGGVISVKNVKVKGMKMFGAVSSKTDHEEMKNPELSNVNIKTTVKNNIITIERFKFKFAGFRPRIEGTSSLDGKLNIKMRLGLPPFGIIGVPLTVTGTKDNPKVKVGKQGEEIEETKDIEE
>NZ_CP017479.1|WP_051877778.1|270644_271343_+|hypothetical-protein
MTTLHRNLDIDPKDWKATEQEYFDKITSKNDLVLGSEILTHYYTSNNTEVILVDVYKTWEDIEKAQEIDDELAKKAWPDEKARTAFFDKRKSYYTPFHSDEIYSSIETIGHKEFKPSSKEPMIIYIRKSQLSMSGKGKGMKEFNEKVTLKDPTIKGYYPFRHAWGSDSRDFMEAYYFDSFADIEKSNKKQDELEKTAWPKEADSKAFFDELKLAFTGVHGDYIYHNLPEASK
>NZ_CP017479.1|WP_035637150.1|269177_270413_+|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MNYQETTNWMFNQLPMYQHQGASAYKKDLTNVILLADHLDNPHKKIKCIHVAGTNGKGSTSHMLASVLQEAGYKVGLYTSPHLKDFRERIKIDGKEISEDFVCEFIQKHKSFFEANDMSFFEMTVGLAFEYFAKEKVDIAIIEVGLGGRLDATNIITPLVSVITNIGIDHVQFLGNTLESIATEKAGIIKPKIPVVIGEYTPETKPVFLAKAETNKAEIYFASDLIPETFPSDLIGDYQEHNKKTVIQTFKILNEQTNFKVSEQSLKSGLLQVVKNTGLLGRWQQLGVNPKIICDTAHNKNGLEIVLEQIQKETFENLHILLGVVNDKELGEVLALFPKNATYYFCKPNIPRGLDANLLQEKSSQFSLIGNTYNSVLEAFASAQNNATKNDFIYVGGSTFVVAELPLNKEV
>NZ_CP017479.1|WP_035637130.1|289191_291945_-|alpha-L-rhamnosidase
MKKIFLSTFILIASVCFSLAKAQNKISVTNLQCEMLNNPEGIDVLRPRLSWQIKSDVNDVKQTAYQILIASTLENLNANKADLWDSGKVNSDESVNVVYKGKKLKDRQNAFWKVIVFTNKGEAKSIENAHFSIGILTYADWKSTRWIGYEKLSKDDSISQFSKLSARYLRKEINLKKQVKNAKVYIMGMGLYELYINGNKIGDQVLAPVPTDYTKNVKYNVFDVTSQLKEGKNMLGTILGNGRFFAMRQDYKPYKIKSFGLPKMALQLFVEYTDGTSEVIRTDDTWKLTTEGPILANNEYDGEEYDARKEMKGWNTTNFDDKNWVNARYVQEPGGFYEAQMTPNMKIKGEVKPISIKATAKGTYILDMGQNMVGWLQLKIKGKSGDQVTMKFAESLQADGSLYIANLRDAKTTDIYTLKGEGEEIWEPRFIFHGFRFVEISGFPGKPTLDNFVGKVVYDDMKTTGTFESSNATMNQIFKNAWWGISGNYKGMPLDCPQRNERQPWLGDRTTGAYGESFLFNNQTLYAKWLDDIKYSQTQDGGLPDVAPAFWRYYGDNVTWPGTYITVADMLYQQFGDQEVIKKQYHSMKKWMVYMEENYLQNDLMDKDKYGDWCVPPESLELIRSKDPARLTDGQLLSSAFYYQLLGIMKKFAKISNAESDIAYYDDLAVRIKKAFNTKFFNAATNTYANNTVTANLLPLYFGIVPEDIKEKVFQNMVHEIEVNKNGHISTGVIGTQFLMRTLTNFGRGDLAFKLASNKTYPSWGFMVENGATTIWELWNGNTADPSMNSQNHVMLLGDLLIWYYENMAGIKSNPETPGFKQIIMKPDFNAGLTYVNASYESIYGLIKSDWKKNKSALEWKITIPANSSAVVYLPTNNASSVMVNNQKLTQLSTFFKIEKNNLVLNLPSGTYILNVK
>NZ_CP017479.1|WP_156101345.1|292111_293680_-|glycoside-hydrolase
MNMNFKYKIIAFVILISALNSSCKSGSGHSQKSQAVILKAENYKHYVDYFNAMEDENLKFVIPNDSAWTWMKKNVPLFECPQQNFEEIYYFRWWSARKHIKKTPQGFAITEFLVDRSYADKYNMIACAVGHHINEFRWVHDPQYIEQDVKLWYRGNDGKPMNKLYKFSSWTADALYNRYLVNYDKTFLLDMYPDMITDYAVWEKDRQRKDGLFWQHDVKDGMEESLSGGRKVQNARPTINSYMYGNAVAIAKMAEMKGDKDVKAKFEVKANDLKQLVETKLWNSKAEFFETFTEKDTLAQVREAIGFIPWYFNLPEKNKGFEKAWEQIKDEKGFSAPFGLTTAERRSPRFRTHGTGTCEWDGAIWPFASSQTLTALANVLNNYDQNFVAKTDYFKQMSLYVESQYFHGKPYLGEYLDETTGYWLMGERERSRYYNHSTFNDLVITGLVGLRPRADEKIEANPLIPQDKWDWFCLDNVLYHGNIITILWDKTGEKYHKGKGFRIFKNGKEIAVSEKLERIVSN
>NZ_CP017479.1|WP_035637123.1|294089_296555_-|glycoside-hydrolase-family-95-protein
MKLKNKITAICFGIVSFATTAQNNSELKLWYDKPATIWNEALPLGNGRLGAMVFGDPSVERLQLNEETIWAGSPNSNAHTKSIEALPKVRQLIFESKFDEAQDLATRDIMSQTNDGMPYQTFGSVYISFLGHQKYTNYYRDLNIGDATAKVKYTVNGVEFTREILTDFSNQVIAVKLSASQPGQITCNVFMNSPIDKTVSSTEGNQIILSGVGTNFEGVKGKVKFQGRLAAQNRGGEVSASNGILSINKADEVTLYISIATNFKNYQDISEDEVVKSKSYLEKALPKSFDEIKKAHVAYYQKFFNRVSLDLGVNDLVAKPTNERIRDFSKQYDPQLASLYFQFGRYLLISSSQPGGQPANLQGIWNDMVTPPWDSKYTTNINAEMNYWPAEVTNLSEMHEPFIQMAKELSITGAETAKMMYNASGWVLHHNTDIWRVTAPVDSAASGMWPTGGAWVCQDLWERYLYTGDKKYLAEIYPIIKGAASFFLDFMIMDPNTGYLVVVPSVSPENTHAGGTGKATIASGTTMDNQLVFDLFTHTMEASALVSPDPAFTKKISDALAKMPPMRIGQYNQLQEWQNDWDNPKDNHRHVSHLYGLFPSNQISPIKTPELFEAAKQSLIYRTDESTGWSMGWKVNLWARLLDGNHAYKLIQDQLHLVTAEQKKGGGTYPNMLDAHQPFQIDGNFGCTAGIAEMLMQSQEDAIQLLPALPSVWKNGSIKGLVARGGFVIDMTWKNNKVSTLKIYSKIGGNCRLKLENNLKAQKGTSIKKANGKNPNPLFYDVEVKKPIISDKASLKQVELPKYNVYDVNMKAGQTYSFSAN
>NZ_CP017479.1|WP_035637121.1|296765_298193_-|acetylxylan-esterase
MKNLKNLTLILLVSIFSLTFSNAQSTSDTNFRKPVTETIKKIETVFHITVVDDRGLLKGKELDYADWRIEQGNLEVSLANILVPFELTYFKQPDGTYQIRKYENHKVSVDKGKERLQYLTTLYSNVSDWEARKKEIKACMITSFGLDKTPAMPKSKPILTPKRIYKDYSVENIALEILPGVYTTGSIYKPYPLDKKSAVILTPDGHFGDGRYRKDEQYRCAMMAKMGAIVVSYDLFAWGESLLQFPTETHRNSIASTVQVLSGMRLLDYLSTQKNVDMSRVGVTGGSGGGSHTMFLGALDDRVTVTAPVVMVSCHFSGGCPCESGRGIHLCGSGTNNAEISAMMAPKPQLIVSDGKDWTLAVPELEFPFIQRTYGLYGKKDLVENVHLPNEGHDFGVSKRMALYPFMAKYLGLDLNKVKNAKGEIDESTCVIEPYDKLYVFGNKAENLPKNALKDINKLYEMFGEKNEKVYEVKK
>NZ_CP017479.1|WP_051877779.1|298338_301149_-|family-78-glycoside-hydrolase-catalytic-domain
MVQLKIHGVNSSKTILSFIFLFFVFVSNGQISAEHLKCEMDVNPLAVNTNQPRLSWQLVSKESNVSQTAYQILVASSAEKLQKNKADVWNSGKVISNKNLQITFGGSPLKSETKYFWKVKVWNQKDKASIWSKTASFRIAPSETELKPIWIGAITKADSHLPEGRNYHTATFNKEKKASLINASDSLSRRSIMLRKPFLVSKKIKEAVVYISGLGHYELTINGKKVGNSEFAPLWTDYDKTVNYNTYELSANQLKKGENVVGVLLGNGMYNTLAERYSKFYVSFGPPTLFFKMKVVYKDGSEEIIKSDESWKYSKSPITYNSIFGGEDYNANLEQKGWDSKGFNDASWKKVIVQEAPKGTLRPQTTSPIIVQKKYEVKDAKELKPNFYIFNMGQNLSGFTSIKVKGKKGQTVRVWVGESLNEDGTVGQGKTGKPYYYDYTLKGEGVEEWTPKFSYYGFQYVQIENINYKDTKDANLPTLLDLKSNFIYNSAGEAGTFECSNDIYNKTHILINNAIKSNFQSVFTDCPQREKLGWIEEIHLNGPGLFFNYNLESFIPATMQNISDSQRDTGLIPTIVPEYVVFGGDFTDSPEWGVTGVILPWMYYEYYGDASLLEKYYSVMKKYVDYLGTKATNHIVSHGLGDWYDYGTHAAGYSKNSPIALSATSHYFYGASLVAKAAKLLNKTEDISKYETLTSDIKKAFNDKFFNPETKQYGTNSQFCNAVPIFMDIVEPKYKQAVMQNLLADIKAKGDRLTTGDVGNRYLFQALAQNGENETMYKMTNHYDAPGYGFQIKFGLTTLTEQWDPRKGNSWNHFMMGQIEEWFYQSLAGIVADEENPGFKHFFIQPEIVGDMTFAKATYQSIYGKIASAWEKKDGKLILKVEIPANTSATIKLPVSKDTTIMVNGKLAEKTNQGFDENQKKSTLKLGSGIYTIECK
>NZ_CP017479.1|WP_035637119.1|301348_303226_-|six-hairpin-glycosidase
MIALQKIKTNVVTATTILLSCVAVNSAQAQQDTIRYTGKTLSNVDYHHGQLSPAVGVHATQIMRASREHKEKADDFGWTYNHQPMMAYWNNTFYLHYLSDPSGEHIPPSQTFLMTSKDGVTWTKPKVLFPIYRVPDGFKKEGVEGVAKDLDAIMHQRMGFYVSSDNRLLSLGYYGVALDKKDDPNDGKGIGRVVREIYKNGSFGPIYYIRYNKTVNPIPATYPFYKESKDKKFIKACDELLSKPLMMQQWVEEADRDDELIPLKKQYKAFSYYHLPNGNVVGLWKFALTSISKDEGKTWEYTPLRAPGFVNSNAKIWGQKTSDNRFATVYNPSEYRWPLAISTSDDGLNYKDLLLVHGEISPMRYGGNYKSAGPQYVRGILEGNGTPPDGKLWVGYSMNKEDIWVASIPVPVTSEVKENVNDVFNDLPNGDELKLWNTYDLSWASTKIEKKKDGQKWLTLRDQDYFDYSRAERVIPFAKKMEATFTIKPEQNNHGLLQVEFQNKQGLPAIRIVFDSDGEIKVKHGARHGGIGKYEAGKEYTVTVKLDVTSRSYTVKVNDGKETPKIFYAPVDGISRIMFRTGEQRYTPNADTEPDTPDFTDLPDTGKLIPEAVFNIKSLVTKKIQ
>NZ_CP017479.1|WP_035637117.1|303303_304221_-|glycoside-hydrolase-family-43-protein
MRKIFIILTLSLFAVSYSQKKKEIFLFTSFREPATEGLYLAYSEDGYNWKGLQGSFLKPEIGASKIMRDPSITKGGDGTYHLVWTTDWKGGNGFGYASSKDLIHWSKQEYIPVMKNEPDVVNVWAPEIFYDDVKKEYIIIWASTIPFRFPKGVEEEKNNHRMYYVTTKDFKTFSDTKLYYDPGFSVIDCVIVKKGKKDYVLVLKDNTRPMRNIKVAFGKSPLGPFEKSSQPLTEYLSEGPTVVKVGKNWLLYYDNYGSKNYKALSTSDFVHFEDVSSKISLPEGHKHGTITTISEDVLKGLIEKK
>NZ_CP017479.1|WP_035637115.1|304484_306059_-|glycoside-hydrolase-family-28-protein
MKIKNILIAFCFIIGLNTAFANDGWLNILNEGGNNKGIKCTEAIQKAIEKAAANGGGTIFFPAGEYLTGALKLRSNITIHLDSGAILKFSENFDDFLPYVEMRYEGIVMKSFSPLFYAKDAENITITGRGIIDGQGKAWWNEVYRIETAKTPIPLTKYQTMWVEQNPGIQYEPYYKRTIDKKFFRPSFFQAYNCKNILIEGVTFKNSPFWTINPEFCDNVTVTGISIFNPYSPNTDGINPSSCTNVHISNCHISVGDDCITIKSGRDADGRKYGKATENVTITNCTMLSGHGGVVIGSEMSGGIKKVTISNCVFDGTDRGIRIKSARGRGGVVEDIRVDNIVMKNIKEEAIILDLFYDKDNAAEPVTERTPIFRNMHISNVTGGNVNKAGFVRGISEMPIQNITFSDINMDGKEGFTVITASDIEFHDVKVNASIGSSFKISDSKNLILDNVGSSTPIKGVPVIKIDNASNIMINNNFPFNSTDVFLEADGKETKNIFLKNNVFNNVTTTVKKGKDLDKKAITE
>NZ_CP017479.1|WP_035637157.1|306138_307533_-|DUF4038-domain-containing-protein
MSIKIKYLLALSISFIFITQSGFSQSAKLPQIKVSKNQHYFVTEDGKPFFWLGDTGWLTFGKLDRAGVEKYFADRKAKGFNVVQVMVLHNINAVNVYGAKALVDEDVSKPITTPGNNFNNKEEYDYWDHVDFTLDVAQKNGIYLAMVPVWGTNVSKGDKVNKEQAIQYAKFLADRYKNRTNVIWLNGGDTRGNEFQDIWNAIGNTLKTNNPNQLVTFHPFGRTDSSDDYNNASWLDFNMFQSGHKRYDQDTVKTAFKEDNYKFIHRDWNLKPTKPTLDGEPSYEGIPHGLHDTLQPKWTANDVRRYGYWSVFAGGAGYTYGNNAVMQMFRKGDKPAYGNKELWTTAINSLGAGQMIYIKKLMLEFPYLERVPDQSLVANQGEKYDYIVATKGKNYALIYTYTGREIAVNMGKIGGTKVTASWYNPRNGQKTKIGIFDNKGIKKFKPSGIKEDGNDWVLILTSNK
>NZ_CP017479.1|WP_156101347.1|307614_310740_-|pectate-lyase
MKQDLLVLSCFVVFFCANISVAQNTFPDIVKNKEGKLSFTADSQGNQIPDFSYAGYMASEKTIPNLDNKIFVPKQEEDATQKIQAAIDYVSNLKPDKSGFRGAVLLDKGIFKISGTLYIKKSGVVLRGSGNTENGTVLLGTGVKRESVIRILGADDKKLGETLEIGNSYTPLGTQKIQLKNASKLKPSDEIIISKALTDNWIKELKMDDFGAETAWVGWKKNDWDITWNRVVAKINGNEVTLNAPLTMALDDKYGTAKVTVYSWPGRIEQIGIENILMKSTYDTSNPKDEEHRWQGISIENTKNAWVKQVNFKHFSGGAVAALKSAQQITVEDCIATEPISEIGGFRRHTFYTEGQQTLFQRCYSENGYHDFSVGGFGTAGPNVFVQCESFQPFNNSGAIGSWATGILFEVSYVDGHALSYNNREQNGRGAGWTAANSVIWETSASKIECYSPPTAQNWAFGTWGGIMAGDGHWKDVNGHISPRSLFYTQLENRLGKLPVDPHIYDLGSEPSSSPSVEVAQQLTKESVSRKENLVEWILEVSKLNPINTNASGLKNANDLKINSTVADNKSKVIVKNGWLTFEDKLIAGDRLNVPWWRGSLRDSDISKSLPDVTRFVPGRRGTGFTDNINEVVDYLSTNNMVALEHNYGLWYERRMDDHERVRRFDADVWPPFYEQPFARSGQDLAWDQLSKYDLTKFNDWYWDRLSRFANLAEAKGQLLVNQQYFQHNIIEAGAHWASSPWRSANNINSTGFPEPPPYAGDKRIFMAEQFYDVTNAARKKLHQGFIRKSLENFQENSNVIQLTSAEYTGPLHFMQFWLDEVQKWKNETGKKGIIGLSATKDVQDAILNDANRAKTVDAIDIRYWYYKEDGSAYAPEGGVNLAPRQHARKLKVGKETDGQVYRAVREYREKYPEKVILYSTDGSPRFGWAALMAGASLPNIPKIELPAFYSALIGMNFVEGTSFSDNLWKMENKGNAYLFYLKNNQDVSVDLSNYKGTFEVYVINGATGSVVKKATISGGKNVTIPQAEIKEKVVFVVKKK

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Crispr_ID: NZ_CP017479_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_2

917110-917180

Orphan

Consensus_repeat	Method
AGAGACGTTGCACTGCAACGTCTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_2

>merge|NZ_CP017479|2|917110-917180|CRISPRCasFinder
AGAGACGTTGCACTGCAACGTCTCTATCTCCCCATAAATAAAAAAAGAGATGTTGCACTGCAATGTTTTTA

>NZ_CP017479|2|2|917110-917180|CRISPRCasFinder
AGAGACGTTGCACTGCAACGTCTCTA	TCTCCCCATAAATAAAAAA
AGAGATGTTGCACTGCAATGTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035635979.1\|927462_928422_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP017479.1\|WP_035635989.1\|916841_917015_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|273605
NZ_CP017479.1\|WP_035636000.1\|911539_912517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035636114.1\|924382_925078_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|311152
NZ_CP017479.1\|WP_035636118.1\|920933_922295_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372583
NZ_CP017479.1\|WP_035636010.1\|907629_908922_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|377422
NZ_CP017479.1\|WP_035636116.1\|922676_923381_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP017479.1\|WP_035635994.1\|914551_916033_-\|GH3-auxin-responsive-promoter-family-protein	unknown	unknown	gnl\|CDD\|377019
NZ_CP017479.1\|WP_035636007.1\|908893_909958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035636013.1\|906572_907649_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340837
NZ_CP017479.1\|WP_081907242.1\|918377_919265_-\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NZ_CP017479.1\|WP_035635986.1\|917211_918018_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP017479.1\|WP_035636016.1\|905252_906236_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187541
NZ_CP017479.1\|WP_035635983.1\|919670_920906_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_CP017479.1\|WP_051877726.1\|925384_927463_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035635977.1\|928415_929063_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223993
NZ_CP017479.1\|WP_035636003.1\|910207_911518_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP017479.1\|WP_035635981.1\|925173_925353_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035635991.1\|916085_916592_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035635997.1\|912817_914497_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035635979.1\|927462_928422_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	1.88335e-12
NZ_CP017479.1\|WP_035635989.1\|916841_917015_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|273605	TIGR01411, Sec-independent_protein_translocase_protein_TatA, twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409. [Protein fate, Protein and peptide secretion and trafficking].	4.46571e-13
NZ_CP017479.1\|WP_035636114.1\|924382_925078_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|311152	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.	2.53068e-12
NZ_CP017479.1\|WP_035636118.1\|920933_922295_-\|hypothetical-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	5.72217e-09
NZ_CP017479.1\|WP_035636010.1\|907629_908922_-\|O-antigen-ligase-family-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	1.21219e-05
NZ_CP017479.1\|WP_035636116.1\|922676_923381_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.29581e-34
NZ_CP017479.1\|WP_035635994.1\|914551_916033_-\|GH3-auxin-responsive-promoter-family-protein	gnl\|CDD\|377019	pfam03321, GH3, GH3 auxin-responsive promoter.	9.09248e-94
NZ_CP017479.1\|WP_035636013.1\|906572_907649_+\|glycosyltransferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	9.55211e-57
NZ_CP017479.1\|WP_081907242.1\|918377_919265_-\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	1.30205e-65
NZ_CP017479.1\|WP_035635986.1\|917211_918018_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	7.14967e-119
NZ_CP017479.1\|WP_035636016.1\|905252_906236_-\|SDR-family-oxidoreductase	gnl\|CDD\|187541	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs. UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP017479.1\|WP_035635983.1\|919670_920906_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	1.41321e-101
NZ_CP017479.1\|WP_035635977.1\|928415_929063_+\|hypothetical-protein	gnl\|CDD\|223993	COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].	0.000622019
NZ_CP017479.1\|WP_035636003.1\|910207_911518_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.1133e-38

>NZ_CP017479.1|WP_035635989.1|916841_917015_+|twin-arginine-translocase-TatA/TatE-family-subunit
MGRLGVTEILVILAVVLLLFGGKKIPELMKGLGSGIKEFKNAAKDDQPADKKEETKE
>NZ_CP017479.1|WP_035635991.1|916085_916592_-|hypothetical-protein
MSGNRSRKGKFWKRLLIKNRLVILNEDTFEEIFSFKLNIMSVFVTLTLGAIILISITTVLIAFTPLREFIPGYSSSKLKRDATVLALKSDSLTVALKKNEAYIKSIQKVLNGDLEYAKFNKDSILSSSSESTEPVDLSPSQNEKELRNRVAKEEKMDSKLQNTNSRKK
>NZ_CP017479.1|WP_035635994.1|914551_916033_-|GH3-auxin-responsive-promoter-family-protein
MSLKSIAAKFFAQRIYKKTQAWANSPIETQKAVFQNLIQDAKQTQFGKDHHFDKIKAYEDFANEVPVRDYEALKSYVDRVVKGEENILWKGKPLYFAKTSGTTSGAKYIPLTKESMPYHIEAARNAILHYIHESGNADFVNGKMIFLQGSPILDEKNGIKLGRLSGIVAHFVPKYLQKNRLPSWETNCIEDWETKVDAIVGETINENMTVISGIPSWVQMYFEKLQQRAAKPVGDIFKNFNLFIYGGVNYEPYRAKFENLIGRKVDSIELFPASEGFFAYQDSQKEKGMLLLLNSGIFYEFIKTEDFYSEKPKRYTIGEVELGVNYVLIISTNAGLWGYNIGDTVQFTSLKPYRVIVSGRIKHYISAFGEHVIGKEVESALQEAMEGTNIRVNEFTVAPQITPKEGLPYHEWFIEFENEPQDFEIFAEALDNAMRKQNIYYDDLIVGNVLRKVVITKVAKNGFQNYMKSMGKLGGQNKIPRLSNDRKIVDLLA
>NZ_CP017479.1|WP_035635997.1|912817_914497_-|hypothetical-protein
MKETKHISRSRAQESSAAIEKMYITMRHLFNRGFYKPMGISGDTLREALLILRPEIYGSIADEKVELNGLLYVIERLPIGIEECRFINLTSDEGYSKSHFKAIVPPKRRRNCYRIDEEQMNVEITRGRSDIYDILTHLTFIFIESHKIKDRVLLDDAGEVSRDWVKLEIAVSQQKKLALVEKEKAISHAANILGRTFEEVLDIYDAFGTETAPDRFLHVIYWLGKLAIEEVVDNHKRTITFSPILRERLGHHIHGEVWATNIKEVLKANQLLDRPIHVISANMHSVMNSIFAVPVLRTKFKDKSDFFVYEELSKSGANELRNQVEAVALKQGMISLPDTSGTNIDVQVFDTAKIDWSKTSFPNATFEGKKPVLIVMDYAFGEQAYETVDELLRPYKKEILLNVKSVSIMGKAGILEGGKGDIMIPNAHINEGTADNYFFENELTAEMFEGNDIAIYAGPMVTVLGTSLQNRDLLKFFHESTWAVIGLEMEGSYYQKAVQAASKIRKSVPHDIKVRYAYYASDNPLETGSTLASGGLGTTGVKPTYLITIKILEQIFNIK
>NZ_CP017479.1|WP_035636000.1|911539_912517_-|hypothetical-protein
MGKKKEKKSKNPEIDLLTVFDRIGDFFEWIKTLLFGIIHFFVKNAIVVVVLIILGFGLGLLIAKVAPRFEQKIIVAPNFKSTDYLYSKIDLLSSKISSNDTLFLKSIGIQKPSEMVSITIEPIVDVTNLMNGNEKNTELLELMAQNGDLKSIIKETTTNKNFTLHTIVLNTSSLVSSQNIVEPLLKYLNASPYYEAYNRINSQNIQNSIKRKEETILQIDGILNQFSGTYGKLSSNEKLVYYNENMNLDEVIKTKDSLANEINKLKIEQYNTSKTIKEKGIILNAKNTKTIKEKLIFTLPLVFVGLFVLYSFCISFYKKQSLKTI
>NZ_CP017479.1|WP_035636003.1|910207_911518_-|oligosaccharide-flippase-family-protein
MVKKLRNLLLKTRQNPLVQQSLVTLVLRIFGVITLFGFTVFLTKTYSPEIVGQYDFVRSFLLVVGSICLLGCDQSILYFKGRLSGSNSLEGIKKIYFKMVGLLLLMSVLFLFIFLAIDNEFVNHYFDDPTVYGILLKSIMTLFFYGLSTLNTEVFRALDHFHVAELFRNIIKYIPLILGAILLSYFDSEVYLAVVFLIGFVFLSIITTGLLLFYFSKAKVEKETLNFTYKEIVAKSYPIAISGMAMFLLMSFDIFFLKKYWDNATVAYYSVAVKLMTILTVIILSVNITVSAKISESFFSKRKEDLAKTVRHASRLIFLMTFPLTVLIFIAPVHLLSFFGKGYVNAKEALLILIVGQGICSAFGTATVYLNMTGRQHIFQIILIVAVFINCILNRVLIPEYGMTGAAIAFVISSFFWNSISALVIYRKDKVNVFLH
>NZ_CP017479.1|WP_035636007.1|908893_909958_-|hypothetical-protein
MPILIKRSTATFIVLFVLNLLVTVSAFYILPKRFFYDAVIIAFDKGNEIGFFGSYPLTILFYKITGLRYLPFPVVGLIQFPILMYLLYKIGIPEDFEKLNIKNIIVYLGIFMIAVYLSMPSKEFITFPYVSLVVFLFLNQRIAFRKVLYISLSLLIIFGIFYRPYFVLIPIIAIGMYVASLMNFKNKTLTVIFYGLVLAILLSLCYGVVSGHYFSEVSRELVNSPRLGSADANSMIVSPVKPDTWYGETIGILYGFFSVNVPVNGIKYIFSPQILVFVIWQLFLFYILLVRFSRCIQAREKYKKELWVLLILFAFFIVQGVFEPDLGSAVRHKIGVFPLIYYALYYGHFRKKLQ
>NZ_CP017479.1|WP_035636010.1|907629_908922_-|O-antigen-ligase-family-protein
MAISEKNFNKAINGFLALIAVMMIFRKPCTLLIIVFAVFNLFFIKKLNYSKQSLVLVLLIASPLLLEIVMFWNNDSLFKGLKSLEKYISLLVFPLFILGNYQRIHFLKILRYYCVTTTIILLFFFLRFVIYFPELIHKYIKGDDLWEIGYAFSNSVGMHAPALNMHLAFVSIGCLFFVFKELRTKGELMFKMSSIIIFVLSFFFVLFVNTRMAFFNVLVGFGLVFLSEVMQVNNLKKVLLNTFFLTVILAGVIFIFVQMNPYMKEKYSSVTFAHMDKIGKLDEIENPEAKVFNALVTRVSIWKSGWELAVKNLPFGVGASDGKQELVKYFKQTNQQFLAKYEFPTHNQFLDFLIKFGILGPIVVLVYIGTIGYLGIDLKNAIVFSFFFLFFTSNLTDDFLLRFDGIAFSGLWMSIFGSYWLQRKITADKS
>NZ_CP017479.1|WP_035636013.1|906572_907649_+|glycosyltransferase
MKVVHIIEALGGGVYTYFKDLSHYFGEDEIAKDISTTIIYSGNRKEIDPEKIEAEFSKGVSSVKINMVRKISPVQDFKSVLQLRKELKKLNPDVIHLHSSKAGVLGRIACFLLFKRKKIFYTPHGYAFLRTDISPLTQKIYWFIEKSFQLVFGGATIACGDSEYNIAKGLGKSYLIRNGINIQAVQQQFTKPQNKTLTIGILARITTARTPKLFNEIALGFPQYNFAWIGDGELKHELTAKNIVITGWFMDRNKALQKLSSIDIYIQTSLWEGLPIAVLEAMALQKPVLATNIIGNKDIVVHNETGFLFTKIEELDTYFEILKEETIRNDFGKKGLERCQRLFDINQNFKNLITIYQQ
>NZ_CP017479.1|WP_035636016.1|905252_906236_-|SDR-family-oxidoreductase
MKRILITGAAGFLGSHLCDRFIKEGYHVIGMDNLITGDLKNIEHLFKLENFEFYHHDITKFVHVPGNLDYILHFASPASPIDYLKIPIQTLKVGSLGTHNLLGLARNKKARILIASTSEVYGDPLVHPQTEDYYGNVNTIGPRGVYDEAKRFQESITMAYHTFHGVETRIVRIFNTYGPRMRLNDGRVIPAFIGQAIRGEDLTIFGDGMQTRSFCYVDDQVEGIFRLLHSDYVYPVNIGNPDEITIKDFAEEIIKLTGTTQKVVYHPLPVNDPLQRQPDTTKAKELLGWEAKVSRAEGMKITYDYFKSLSKEELSKEEHKDFSKYIF
>NZ_CP017479.1|WP_035635986.1|917211_918018_-|ABC-transporter-ATP-binding-protein
MSYLEIKNLEISFPTPKGKYIAVRDINLSIKKGEIISIIGHSGCGKSTIMNAIGGMLTPTGGSVILDDKNIKGPGPDRGIVFQNYSLLPWLTVENNIFQAVDSVMNCSKEEKNEIVIKNLKMVNLYQHKDKLPGQLSGGMKQRVAIARAFAINPGVLLMDEPFGALDALTKGAMQLEVLKLWNLNNREKTIVMITHDIEEALFLSDRIVVLHNGPASTIREIVTVNLPRPRNKIEIVKTPEYIKLRDHLLHLLTDHFSIEDMGVTYKN
>NZ_CP017479.1|WP_081907242.1|918377_919265_-|nitrate-ABC-transporter-permease
MSNSNAVTIETEGVAGSYPYLKTFGKVIKKKNLKKASNYIFEKAKSIAFACIGLLIFCGFWSLLSYYTKEALPGPTATLKVLYEMLSDPFYDYGPNDKGIGLQLFVSIKTVLTGFLLGSLFAIPFGILIGASSFFKKIFYPIVQFLKPVSPLAWFPIGLVVFKDTGMATIFIVFITSLWSTLINTAFGVGTIPQDHKNVAKAFGFSKWRYLSKVVFPYTLPHIITGLRLSISVAWLVIVAGEMLSGGAGIGFFVWDSWNALSLEKVISAIIIIGFVGIIFDGFFTMIENKVSYKG
>NZ_CP017479.1|WP_035635983.1|919670_920906_-|ABC-transporter-substrate-binding-protein
MIQTKKHISPLFTLLIMVMCTVLFSSFTTKPNPPAKEPVKLGFIPLTDCSPIVMAKELGLFAKYGVEVVVTKETSWANVRDKILTGELDGAHCLYTMPFSVYTGVGGKAGSEMKIAMMLNENGQAITLSNDFCGKVGFKQMNKVTPVVAAKLKAEKEVTFAMTFPGGTHDLWLRNWMSLAGLNQKAVKIITIPPPQMVANMKVGNMDGYCVGEPWGGVAVKQGIGFTQIATQDIWKDHPEKALVVNKEFSESRREDLKKVMKAILEACIWLDNPANRKKAAAIIGKAPYVNAPADVIEGRLMGDYNLGCNQGTEVYDNDYMLFYKGGTVNYPRKSYAIWAMAQYVRFGYLKEEPNYKAIADKLILQDLYEEVAKSMKIKIPTDDMKPFSLTMDKTVFNPSNPSAYLKVVKH
>NZ_CP017479.1|WP_035636118.1|920933_922295_-|hypothetical-protein
MSLFGYNAANAQFTASGQFRPRTEFRDGYSTLQKKDAETAAFTSQRTRLNVGFTGYRFRFFVAVQDVRVWGQDASTINRTTTAENNGIQLHEAWGEIILNDTVSKIQNLSLKIGRQEISYDDQKVIGGLDWLQQARYHDAVVLKFANKGWTADFGAAFNQNKELLEGTIYNGVPPVTAGYTAGTNGLGTNYKSLEYAYLARKFYFGDISFLFLSDNFNKYSNVTSGTPPVVTKVNEQGIWTRNTTGFYYNINPTRKLKLEGSFYHQFGHDKNGRSLSSDLASLTATAQVGRKLFLAPGIDYLSGNDGTKAVTATSTNNQFDPLYGTPHKFWGNMDYFYASSGFGSQGLLNYFLKTKYNLKDNLTLFADLHAFEAANTLSDGAGGTQNSYLGTELDLKMSYNFTKMVNIEAGYSYMKATNSMASAQVKNVVNANLSPQWAYVMVNIKPNFLNKK
>NZ_CP017479.1|WP_035636116.1|922676_923381_-|Crp/Fnr-family-transcriptional-regulator
MKENQAICISCSNENCFIKKHIHLPEMQSYIEKKHSFTCKKAQQFIIEGAPIQGLYFVQKGKVKTVKTGINGREQIVRFTTNGDTVGFRGFGTSNRYLIGAYALEDTVLCNFNNEVMLDILKNVPEFTYDMMLFYAEELNKSENNIRKIAHMNVRERVIDTLLYIHRKFGQTNDLINLDLSRKEIADFAGTTEEQVTRVISSLKRETLIKTVGKKIGLQQINKLKSEIMEHKYV
>NZ_CP017479.1|WP_035636114.1|924382_925078_-|LexA-family-transcriptional-regulator
MDKSLILKEIKKYYNFKTDGEFADFLGIKQNTLSNWASRNSIDYDRIISKCENIDANWLLTGKGEMLKSNKDSIAEPVESYRKTKDPIYEIQRVPLFNLEATMGLVPLVDGDGVDEEKVIDYITIPSMPSCDGAIYASGDSMYPLLKSGDMIAYKRIAVERAQIFFGEMYVVAVKLDESSTMKTIKFVHQSELGDEYVKLVSHNQHHAPKDVKLSQIAAIGLVRASIRLHN
>NZ_CP017479.1|WP_035635981.1|925173_925353_+|hypothetical-protein
MKKIRIHPEMKTQISKEFKVTMQTVSMSLKYFFDSDKAKAIRKRALGLLQQEIDQNKEE
>NZ_CP017479.1|WP_051877726.1|925384_927463_+|hypothetical-protein
METPYKYYEKKLGFKIKYLIYDRDYHVDSLKLISYRAINWRMNSDTCIEKQLRRGSLGCDALVVFDSLSQDWKDRITTKFGKPKEEVKKSWFAQHYVADREAFDFYIGYRYGEKNSKKLELDTIEQYGYNASVLNTVLIMKNNRKQYLKALGYTSVDIWDSLSRDVNAFRDVDHNLPTTKDSLRYKVNKYVKEGYAGLISGKFGMQNALKIKEREQEALLDELLAKHTNLDNTLIATVYNAIAEQKNWPTITAQTVGNRKEKSNLVIYAGRNGVSALSNNILMQNKRQAPTSPMLYWTLDGWDAELLYQKSTIDKKGYSVTTYHNRLTMVVVLDPFNKYPVGYAIGTHETPELIKEALRNAFNHTAELFGQRFKPYQLQSDNYQKKALTPVYEACTKYYTPAAVKNAKAKVIEPYFAHINKTYCKLMDNWSGFGVGSGSKNQPNSEMLAKLSRSFPDEIGCRKQLESIIAAERSKKQKQYLEQWENTQETHRLPMPTENYLLALGKTTGDTNKLEGSGLHIKINGVKRTYDCFELDFRQQAHQNWNILYDDNNLNEVLAISADQKYRFVLQDKYIQSMAIAEHNEDDGWQRQRVKEYNNTAIKFITDTREDNANVLDQFFNQNPLLNDTLAKHLLTDSRGQHKDNKSQQRLQPEAEKVLLKQERTIQKAAEKSWQDEQNEYHNNKIDLNNYI
>NZ_CP017479.1|WP_035635979.1|927462_928422_+|ATP-binding-protein
MDQITKKEIIQSLTAYMQEHNLKQADVANKTGVRKEYLSIMLKENSDFMYDAGGTRGFIPNHHFHALATMCGYQIEKAYWSLQPTPQTSAIIAHLEDARSHHSTVVLIGETGCGKSFTSKMFASKNPIDTFIVTAGSSDTLGDLIDKIVSELNIHATGKSKSVKIRQIATKMKFLKNYGHKPTLIIDESEYLKQAALCAMKELYDNLADYCSLVFIGTDQLVENIEKLKKRNKSGIPQFHRRIKFGLRLLPHIDRSYKLFLADIEDRHLRKFLLNNCGNYGELHDVLVPASREAERLGEPLSLDLVRKVFNLPEGNLVW
>NZ_CP017479.1|WP_035635977.1|928415_929063_+|hypothetical-protein
MVIKKALTVANVINQKVTLIQFSDHAKELYQAFGNPQNKGIWFVWGGSGSGKSSLLLDITKAFCKDLKAIHVEHEEDLDDVDFIDRLKLKNMQDVKDNFLTAQYNHDELCAYLDRRDSAKVVVINSATYFFKDLQQYYDFAKKYKRRKIIIISGMAKGNNPLTYMEEKIMFDANKKIFCSGYLASCKGRTIGPNGGLYVIWKEGYDKIRGESKQD

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Crispr_ID: NZ_CP017479_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_3

1022089-1022168

Orphan

Consensus_repeat	Method
AGCTCCATGGGAGCGACATATTTATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_3

>merge|NZ_CP017479|3|1022089-1022168|CRISPRCasFinder
AGCTCCATGGGAGCGACATATTTATAGAACAAGAATTTGAAATCAAGAATTTAAGCTCCATGGGAGCGACATATTTATAG

>NZ_CP017479|3|3|1022089-1022168|CRISPRCasFinder
AGCTCCATGGGAGCGACATATTTATAG	AACAAGAATTTGAAATCAAGAATTTA
AGCTCCATGGGAGCGACATATTTATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035632826.1\|1028829_1030431_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
NZ_CP017479.1\|WP_035632799.1\|1017183_1017846_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP017479.1\|WP_035632809.1\|1022770_1023769_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP017479.1\|WP_035632807.1\|1022175_1022634_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP017479.1\|WP_035632791.1\|1013060_1013933_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP017479.1\|WP_035632795.1\|1015558_1015963_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NZ_CP017479.1\|WP_035632882.1\|1028085_1028559_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP017479.1\|WP_035632816.1\|1024808_1025009_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP017479.1\|WP_035632804.1\|1019474_1021136_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP017479.1\|WP_035632822.1\|1026565_1028005_+\|spore-maturation-protein	unknown	unknown	gnl\|CDD\|225336
NZ_CP017479.1\|WP_035632785.1\|1011305_1011863_-\|CopD-family-protein	unknown	unknown	gnl\|CDD\|367596
NZ_CP017479.1\|WP_035632820.1\|1025637_1026351_+\|3'-5'-exonuclease	unknown	unknown	gnl\|CDD\|99825
NZ_CP017479.1\|WP_035632879.1\|1017904_1018933_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP017479.1\|WP_035632802.1\|1019001_1019382_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035632796.1\|1016099_1017026_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP017479.1\|WP_035632818.1\|1025026_1025497_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP017479.1\|WP_035632787.1\|1011938_1012958_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_CP017479.1\|WP_035632814.1\|1024324_1024819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_051877588.1\|1023776_1024157_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|227001
NZ_CP017479.1\|WP_035632793.1\|1014160_1015417_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035632826.1\|1028829_1030431_+\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
NZ_CP017479.1\|WP_035632799.1\|1017183_1017846_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	1.94558e-38
NZ_CP017479.1\|WP_035632809.1\|1022770_1023769_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP017479.1\|WP_035632807.1\|1022175_1022634_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.23586e-33
NZ_CP017479.1\|WP_035632791.1\|1013060_1013933_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.42666e-24
NZ_CP017479.1\|WP_035632795.1\|1015558_1015963_+\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	2.11432e-48
NZ_CP017479.1\|WP_035632882.1\|1028085_1028559_+\|peptidylprolyl-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	1.15163e-35
NZ_CP017479.1\|WP_035632816.1\|1024808_1025009_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	4.06871e-23
NZ_CP017479.1\|WP_035632804.1\|1019474_1021136_+\|hypothetical-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	2.87611e-30
NZ_CP017479.1\|WP_035632822.1\|1026565_1028005_+\|spore-maturation-protein	gnl\|CDD\|225336	COG2715, SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only].	5.31996e-49
NZ_CP017479.1\|WP_035632785.1\|1011305_1011863_-\|CopD-family-protein	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	5.68473e-48
NZ_CP017479.1\|WP_035632879.1\|1017904_1018933_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	7.67303e-180
NZ_CP017479.1\|WP_035632820.1\|1025637_1026351_+\|3'-5'-exonuclease	gnl\|CDD\|99825	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.	3.66744e-64
NZ_CP017479.1\|WP_035632796.1\|1016099_1017026_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	8.47578e-106
NZ_CP017479.1\|WP_035632818.1\|1025026_1025497_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	4.36053e-55
NZ_CP017479.1\|WP_035632787.1\|1011938_1012958_-\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	3.38224e-127
NZ_CP017479.1\|WP_051877588.1\|1023776_1024157_+\|c-type-cytochrome	gnl\|CDD\|227001	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion].	7.60454e-16
NZ_CP017479.1\|WP_035632793.1\|1014160_1015417_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	8.80456e-104

>NZ_CP017479.1|WP_035632804.1|1019474_1021136_+|hypothetical-protein
MTEKELQDYLKTRYPIENEKCEWKEFKSLKNSVSGDAGNDVISYISAIANMQGGNLIIGIQDKTLNIIGIQDFAGYTIENIRFRINGNITNLNVETFSVQEFITSDTNKTVWIFQIPKHQFRLPVYAHKKTWQRIDDNLVEMTKARLDAILTQFQVNEDWSKVIIQEATIEDLDQEAIKKARVEFKKRNPKYSDEVDNWNDADFLNKSKLTIKGKITRTALILLGKDESEHYLDSSVKIRWNLKTVDNQDKDFEIFSIPFLLSVDEVYKKIRNLKYRYLRDGTLFPDEVLRYEPFNIRESLNNAIAHQDYSKGARINVVEFEDDHLVFSNYGSFLPKSVEDVVLNDTPEEVYRNPFLVEAMKNLDMIETQGGGIRKIFNFQKQRFFPLPDYNFDDNKVKVTITGKILDENFARILIHNKELRLEEIILLDKVQKKKDISESEFKLLKKNKYIEGRKPNIYLSHIIVESVNNEELKREYLANRSFDDAHFKEMILEYLKKFGKTKRKAIDDLIIPKLSAILSEDKKKKKVTNFLSALGNEGKIQCLPGYYWETV
>NZ_CP017479.1|WP_035632802.1|1019001_1019382_+|hypothetical-protein
MLNKGLRDQESIRIDNVLKKLMSLVYVPKFWNLEDLLFLENELKDLAMNVESLQEFEEEELIIHLQRLHLDWNQLELFADFLVAFSKDSQFDFKEKAIAIYNYIQQESKVFSFGIINKLAALKANL
>NZ_CP017479.1|WP_035632879.1|1017904_1018933_+|uroporphyrinogen-decarboxylase
MIKNDLFLKALKGETVQRPPVWMMRQAGRYLPEFRALRDKYDFFTRCETPELAAEITVQPIRIIKPDAAILFSDILVVPRAMGIHVELKDNLGPIIPNPIRTMEQVNQVFVPNIEETLGYVMDAIKLTKEMLDDEVPLIGFAGSPWTIFCYAVEGKGSKSFDTAKGFCFSNPVAAHTLLQKITDTTILYLKEKVKAGVNAVQIFDSWGGMLSPVDYQEFSWKYINQIVEALAEVTPVIVFGKGCWFALNEMGRSKASALGVDWTCTPRNARYLSGGNVTLQGNFDPSRLLSPIPTIKKMVHEMIDEFGKDKYIVNLGHGILPNIPVDHAKAFVDAVKEYGEK
>NZ_CP017479.1|WP_035632799.1|1017183_1017846_+|uroporphyrinogen-III-synthase
MSKIHILSTKILSSVQKEELIKEDFEVTEANFIKTKSSDFDLKEINDNLIFTSQNAVQSILLHPKNGELKSKNVFCVGLKTKALLEENGFTVEVYVDYASDLAEIITLIYGKQSYTFFSGNLRKETLPKALKTAKVNFNEIQVYETTLTPHKIKTKVDAILFFSPSGVESYLAENKIKNEICFCIGETTAEALEKTTRNIIVAEQPSVENVIEDVIAEYK
>NZ_CP017479.1|WP_035632796.1|1016099_1017026_+|hydroxymethylbilane-synthase
MAEKTIRIGTRDSELALWQAHTVEKKLNDLGYKTEIIAVKSQGDIILDKPLYELGITGIFTKTLDIAMINGQVDIAVHSMKDVPTALPMGIVQAAVLERANTVDILVHKGNLDFLQGEGTVATGSLRRQAQWWNKYPNHTVVDLRGNVNTRMQKLQENNWNGAVFAAAGLERINLKPENYINLDWMIPAPAQGAMVVVAMAEDDFCRDAVGQLNDIETEVCTHIERQFLKTLEGGCTAPIGALAKYNEIEDTIDFKGVLFSIDGKQKIEVNKIVPIEEWKKLGYNSAQEIFANGGTELMKTIKESLKK
>NZ_CP017479.1|WP_035632795.1|1015558_1015963_+|GxxExxY-protein
MTKKDVTQLAYEITGFAIKVHKALGPGLLESIYEQCLKYELEQNGYDVKQQLVVKIDYYDLELESDLRIDLLVNDCVVVELKAIENLLPIHEAQLLTYMKLLQRPQGLLINFNTLNITKSMKPLVNEFFTRLTD
>NZ_CP017479.1|WP_035632793.1|1014160_1015417_+|glutamyl-tRNA-reductase
MENHNGSKHQFFYSIGLSYKKADAEIRGKFSLDTVAQTRLLEQAKTEGIKSLFVTSTCNRTEIYGYAEHPYQLIKLLCENSNGTVEDFQKVAYVYKNQEAISHLFRVGTGLDSQILGDFEIISQIRNGFAEARAIGLSNAFMERLVNAVIQASKKIKNETEISSGATSVSFASVQYIIKNVPDIGNKNILLFGTGKIGRNTCENLVKHTKNEHITLINRTKDKAEKLAGKLNLIVKDYSELHIELQKADVVVVATGAQNPTIDKAILNLKKPMLILDLSIPKNVHENVKDLEGVTLIHMDHLSQMTDETLENRKAHIPAAESIIEEIKEEFVAWTKARKFAPTINALKEKLNTIKNSELDFQSKKIANFNEEQAEIISSRIIQKITTHFANHLKNEDTMVDESIDWIEKVFQIETNSK
>NZ_CP017479.1|WP_035632791.1|1013060_1013933_-|AraC-family-transcriptional-regulator
MGSQDIITIEDDFTLLRFQNDSDVSFQAQHEVSSGLIQFHFGLKGKAKFNFNQGNYALDLNEEKSYLFYNPQKELPLNLELAPNTWVISILISIQKFHRLFSNDAGHIPFLSDENKDKKYYKEGDISPSMAIVLSQLFHYNLNPSIKNLYYKGKGYELLSLYFNRSEDPNAEQCPFLIDEENVYKIKKAKEIIIANMAEPPGLQELADEIGLTLKKLKMGFKQIYGDTVYGYLFDYKMDYARQLLDTGSYNVNEVGLKIGYSTGSHFIAAFKKKFATTPKKYLMSINSNV
>NZ_CP017479.1|WP_035632787.1|1011938_1012958_-|ferrochelatase
MKGVLLVNLGSPESPTAKDVKPYLDEFLMDKYVIDVPYLLRAFLVRGIIMRKRPEAAAHAYQKIWWKEGSPLMVLSERMHKKVQPLTDIPVSLAMRYGSMSIEKGLQELHDQGVTEVLLFPLYPQYAMASTLTILVLAEEIRKKKFPQMKFTDVPAFYNKPDYIKTLANSMKKHLNGFEYDKLVFSYHGIPERHVRKTDKTKSHKKFVTNEMCCEVGTPQAEFCYRTHCYETTRLVVEQLGIPKDKYCVTFQSRLAGDKWLQPYTDVEINNMPAKGIKKIAVVTPAFVTDCLETLEEIAMRAKEDFEANGGEDFMAIPCLNDDDEWCETVGNWINTWTK
>NZ_CP017479.1|WP_035632785.1|1011305_1011863_-|CopD-family-protein
MEYYNYLKSLHIIFVITWFSGLFYIVRLFVYQIEAADKPSPEKEILQKQYKIMSYRLWYIITWPSAVLASIFAFWMLFFTPMGKVWLQMPWMHVKLGFVFVLYLYHLKCQQIFSQLQKDEVKYTTNYMRLWNEIATIILFAVVFLVVLKNAVNWIYGVIGIFLFSITIMLGFKFYKRIRERNSNQ
>NZ_CP017479.1|WP_035632807.1|1022175_1022634_+|IS200/IS605-family-transposase
MANTYTQIYIHIVFAVKGRQNLVSKNWKDELYKYITGIITNEGQKLIAINGMHDHIHILVGLKPNKALSDLVRDIKSNSSKFINEKRWINGKFEWQTGFGAFSYNHSQLTNVINYIQNQEEHHKKKTFKEEYIDFLEAFNIDYNNEYVFEDV
>NZ_CP017479.1|WP_035632809.1|1022770_1023769_+|porphobilinogen-synthase
MFPLHRGRRLRVNESIRSLVRETTLSPADFMFPMFIAEGENVKVEIPSMPGIFRRSIDLTVAEVKELFELGIRAVNIYVKVSEDLKDNTGKEAWNPSGLMQQAIRAIKTACPEMIVMPDVALDPYSIYGHDGIITNGDVENDATNDALVKMAVSHAEAGADFVAPSDMMDGRVLRLRQGLDAAGFHNVGIMSYSAKYASAFYGPFRDALDSAPREADVVVPKDKKTYQMDYANRIEAVKEALWDVEEGADMVMVKPGIAYLDIVREVKNAVDVPVTVFHVSGEYAMIKAAAERGWLDNDKIMMEQLMCIKRAGASLISTYFAKEAAVLLNKK
>NZ_CP017479.1|WP_051877588.1|1023776_1024157_+|c-type-cytochrome
MKKIVLITAAVLAFSCKKESQEPFGKSNESTEVQTPEALGKDLFEGKGNCVACHQVDQKVVGPSIAAIAKIYKDKSGNLVNFLKGEGEAIVDPEQFPVMQANLEITKTFSDEELKAIEAYIYSNLK
>NZ_CP017479.1|WP_035632814.1|1024324_1024819_+|hypothetical-protein
MKINYLFPHRFKKFGWIVFISVLVFYVLCLFNQDLFNDYFEEKLNFKVFAIIDVDFWDRKTHFFKMIKNNIIDELILCPLIISGILVGFSKVKVEDEMVSKIRLESLVWATYVNYVILLFGLIFVYGMTFLDILYANIFSLLLFFIILFHWKLYQYNKMSSDEE
>NZ_CP017479.1|WP_035632816.1|1024808_1025009_+|helix-turn-helix-transcriptional-regulator
MKNSVKVQRAIANITQAELAEKIGVSRQTINAIEAGKYVPSTVLALKIARLFEKSVNEIFELEETD
>NZ_CP017479.1|WP_035632818.1|1025026_1025497_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
METAYIKTPLGIAEIIGDENGISVISVSDEGIVSKEIPTVLQEVVSQLNDYFEGKRTDFTFKLNPAGTEFQQKVWKSLLEIPFGKTMSYLELSKKLGDVKAIRAVASANGKNPLWIVVPCHRVIGTDGSLTGYAGGLWRKKWLLEHENPSTQQSLF
>NZ_CP017479.1|WP_035632820.1|1025637_1026351_+|3'-5'-exonuclease
MIEKINLNNILFLDIETVPDAADYNSLDDEMKNLWEQKTSYQRKEEFSGEEFYDRAGIWAEFGKIVCISVGYFVIKGDVRNFRVTSFFGEEPKILKDFNNLLNNHFNQPQHLLCGHNAKEFDIPFLARRMIINQIPIPDKLNLFGKKPWEIPHLDTLELWKFGDYKHFTSLKLLCKVLGIPSPKGDIDGSQVGHVFYVEKDIDRIVTYCEKDTIAVAQIFLRLRREDLLIEEEIIHV
>NZ_CP017479.1|WP_035632822.1|1026565_1028005_+|spore-maturation-protein
MVLSRFWLVIFISSIVFVAVSLFTGSSYSLDFVLNGKKDDPILISEKYIEQVPVFIKDSIKKAKDQTMIINRDTLNADTTYVYKNKTVKIFSGVQKSDGLLPTCKSTLLDLVLPLMAYLAFFCGLMELLIISGASEKLAKLLSPVFVKVFPSVPKNHPSISYMTLNFAANFLGLDSAATPFGLKAMESLQEINPEKDKASDAQIMFMCLHASGLTLIATSIIGYRAAANATNPADVMLPCIITSFIGTIAAFLIVGIRQKINFKSASLVVSLMALIAAIVGLLMYVNHLDLIGKNYFTSNLSALILVVIIVATLILSFVKEKKFTEAKTTVFEAFVSGANNGVKTGVTIFPYVLGMLVAISLFRNSGLFEIISNWIAFVFSNMGVSKEITDALPVALLRPFSSAGSRGFLIDSMNTFGADSLTGRLSSIFQCSAESTFYVIAVYFGSVNIKNTRYALGTMLIVDLICVITAIFVASWFF
>NZ_CP017479.1|WP_035632882.1|1028085_1028559_+|peptidylprolyl-isomerase
MKYTFLAILVTFFVSCTTKDTPEEEVTPIDYSAQNDKEIQTYIANNQLDAHKTSSGLYYVITEEGTGKQPTGTSNITVTYKAYFTNKTVFDQSADSGISFNLSQVIKGWNEGLQYFKEGGSGILLIPAHLGYGSFNYNGIPGGTVLVFDVKLISVNN
>NZ_CP017479.1|WP_035632826.1|1028829_1030431_+|fumarate-hydratase
MDFIYQDPYPILKDDTQYRKISSDFVKIEKLGDREILTVDPKGLELLAQEALKDVSFMLRTSHLEKLRAILDDPEATDNDRFVAYNLLQNAVVAIDGELPSCQDTGTAIVMAKKGENVYTGVDDAEWLSKGIFNTYQERNLRYSQIVPISMFEEKNSGSNLPAQIDIYAKKGATYDFLFLAKGGGSANKTYLYQQTKSLLNEKSLDAFIKAKIMDLGTSACPPYHLALVIGGTSAEANLAAVKKASAGYFDNLPTSGNMAGQAFRDLEWEKRVQLICQESHIGAQFGGKYFTHDVRVIRLPRHAASCPVGLGVSCSADRNIKGKITKDGIFVEQLEVNPKRLLPETPPHLEEAVEIDLNQPMADILKKLSQYPIKTRLKLNGTLIVARDIAHAKIKELLDAGKPMPEYFKNHPIYYAGPAKTPEGMASGSFGPTTAGRMDVYVEEFQKNGGSMVMLAKGNRTKDVMNACKTYGGFYLGSIGGPAAILAKENILSVEVVDFEELGMEAVRKITIKDFPAFIITDDKGNDFFANL

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Crispr_ID: NZ_CP017479_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_4

1131492-1131575

Orphan

Consensus_repeat	Method
AGACGTTGCATTGCAACGTCTCCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_4

>merge|NZ_CP017479|4|1131492-1131575|CRISPRCasFinder
AGACGTTGCATTGCAACGTCTCCACAACGAACCGCAATCTAGACGTTGCATTCAATCAGACGTTGCATTGCAACGTCTCTACAA

>NZ_CP017479|4|4|1131492-1131575|CRISPRCasFinder
AGACGTTGCATTGCAACGTCTCCACAA	CGAACCGCAATCTAGACGTTGCATTCAATC
AGACGTTGCATTGCAACGTCTCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_070261785.1\|1119539_1119770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633414.1\|1135342_1135972_-\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|215002
NZ_CP017479.1\|WP_035633406.1\|1132593_1133175_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_CP017479.1\|WP_035633401.1\|1131588_1131984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633387.1\|1125118_1125565_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP017479.1\|WP_035633412.1\|1133883_1135272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633409.1\|1133174_1133732_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366812
NZ_CP017479.1\|WP_035633381.1\|1121993_1124042_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP017479.1\|WP_035633384.1\|1124130_1125108_+\|DUF4837-family-protein	unknown	unknown	gnl\|CDD\|379774
NZ_CP017479.1\|WP_035633419.1\|1136863_1137745_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP017479.1\|WP_035633403.1\|1132189_1132570_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633417.1\|1136074_1136782_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319817
NZ_CP017479.1\|WP_035633391.1\|1128323_1128704_-\|ribonuclease-P	unknown	unknown	gnl\|CDD\|234989
NZ_CP017479.1\|WP_035633421.1\|1137771_1138458_-\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP017479.1\|WP_035633396.1\|1129697_1130684_+\|acyl-ACP-desaturase	unknown	unknown	gnl\|CDD\|377031
NZ_CP017479.1\|WP_035633424.1\|1125764_1127402_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP017479.1\|WP_051877615.1\|1138458_1139826_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224031
NZ_CP017479.1\|WP_035633389.1\|1127404_1128232_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP017479.1\|WP_070261786.1\|1120336_1121524_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP017479.1\|WP_035633394.1\|1128949_1129684_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035633414.1\|1135342_1135972_-\|chloramphenicol-acetyltransferase	gnl\|CDD\|215002	smart01059, CAT, Chloramphenicol acetyltransferase. Chloramphenicol acetyltransferase (CAT).catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT. evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see ). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen.	2.77775e-72
NZ_CP017479.1\|WP_035633406.1\|1132593_1133175_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	9.29246e-63
NZ_CP017479.1\|WP_035633381.1\|1121993_1124042_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.80319e-62
NZ_CP017479.1\|WP_035633409.1\|1133174_1133732_+\|hypothetical-protein	gnl\|CDD\|366812	pfam01789, PsbP, PsbP. This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.	0.000302872
NZ_CP017479.1\|WP_035633384.1\|1124130_1125108_+\|DUF4837-family-protein	gnl\|CDD\|379774	pfam16125, DUF4837, Domain of unknown function (DUF4837). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.	1.07027e-99
NZ_CP017479.1\|WP_035633419.1\|1136863_1137745_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.58088e-09
NZ_CP017479.1\|WP_035633417.1\|1136074_1136782_-\|HAD-family-hydrolase	gnl\|CDD\|319817	cd07515, HAD-like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.15118e-52
NZ_CP017479.1\|WP_035633391.1\|1128323_1128704_-\|ribonuclease-P	gnl\|CDD\|234989	PRK01903, rnpA, ribonuclease P protein component.	2.72857e-22
NZ_CP017479.1\|WP_035633421.1\|1137771_1138458_-\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	1.8019e-14
NZ_CP017479.1\|WP_035633396.1\|1129697_1130684_+\|acyl-ACP-desaturase	gnl\|CDD\|377031	pfam03405, FA_desaturase_2, Fatty acid desaturase.	0
NZ_CP017479.1\|WP_035633424.1\|1125764_1127402_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	7.72536e-87
NZ_CP017479.1\|WP_035633394.1\|1128949_1129684_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.54754e-35
NZ_CP017479.1\|WP_051877615.1\|1138458_1139826_-\|ATP-binding-protein	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	3.66104e-18
NZ_CP017479.1\|WP_035633389.1\|1127404_1128232_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.42917e-66
NZ_CP017479.1\|WP_070261786.1\|1120336_1121524_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP017479.1\|WP_035633387.1\|1125118_1125565_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	8.34654e-57

>NZ_CP017479.1|WP_035633396.1|1129697_1130684_+|acyl-ACP-desaturase
MSIKNIRLEVMQFLENKVEGFMEQYLIPVEKIWQPSDFLPNSESDNFLEEVRELREISKDLPYDFWVAMVGDMITEEALPTYENWLMELEGVDNEGRNAWSKWVREWTGEENRHGDLLNKYLYLSGRVNMREIEMTTQHLINDGFDIGTGRDPYKNFVYTSFQELATYVSHNRVSQLAKSYGDKKLSKMCKMVAGDEMRHHHAYSHFVTEIFKLDPSEMMLAFQYMMKQKIVMPAHFLRESGQKISSAFEHFSDSAQRIGVYTANDYVDILQKLIDKWEIDKVTGLTAEAEKARDYLMKLPSRMAKISERLVIPQESFQFKWVEPARL
>NZ_CP017479.1|WP_035633394.1|1128949_1129684_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MQKLISYPLSLIVLILVLLTLVVFHPIQWICLHVFGYQAHKKSVDYLNFILLKIVLLLGTTFSCKNAESVPKGVPVIFVANHQSLYDIIAIIWFLRRYHPKFVSKKELGKGVPSVSFNLRHGGSVLIDRKDPKQAIPTIKKIADYIEKHKRSAVIFPEGTRSRNGIPKEFAQTGLKILCKNTPSAYVVPISINNSWKLLRYGTFPYGLGSHISLEIHDAFAVKDFEFNEIMQKTESSVKNGVKI
>NZ_CP017479.1|WP_035633391.1|1128323_1128704_-|ribonuclease-P
MSFTYPRNEKLKSKISIGLLFTEGKSVSKYPLRLVYNPGTFGEGEKIKIGVSVSKKYFKKAVDRNYFKRVLRETYRLNKHLLIDNLDQPYSFMFFYQSKDRLSFEEINTKTIQLFEKFLLQIKKEE
>NZ_CP017479.1|WP_035633389.1|1127404_1128232_-|DUF4349-domain-containing-protein
MKSKLIITLLFFAVLSCKKAEAESSSDLAISMAKLPPKKEIAEVGSNSAFTNDEKKIIEQKIIRNGNLRFETDNLESTYEQIKTAVKKGKAFIQNDSEGKDYSSIYRRITVRIPSENFDSFIKDFSTGVAYFDNKEISSQDVTEEYIDIDARLKTKKKLENRYLELLAKATKMSEMLAIEAQLSAIREEIEAKEGQLRYMQNQVSLSTVTIEFYKTIAQESGVTISYGAKVWNAFKSGFYGISSFFLGLLEIWPFIIIAIALFYFIRKRFKKKNK
>NZ_CP017479.1|WP_035633424.1|1125764_1127402_-|S41-family-peptidase
MRNFFQKKYIIPVVASAFLFVGVSFKDDYFEIAKQLEIFTTLFKELNKNYVDETTPAELMNNAIKGMLASLDPYTVYFNEQEVIKFKINNTGEYTGIGALITRKDDKLIIKEPYKNFPADKAGLKAGDEIIQIGDTPLADFKDDASQLLKGSKNTRIDIKYIRQGKTNSTVIVLDEVEIKSVPYFAKIDDKTGYIVLDHFNRKASSETKEALEQLKRDGAERIVLDLRGNPGGLLNEAVNICNLFVPKNEIIVTTKSKIEKHNNTYKTSKDPIDTTIPLVILVNGRSASASEIVSGALQDLDRAVVLGSRSFGKGLVQRPVELTYGTQLKVTISRYYTPSGRCIQALDYAHKDKNGVAIRTEAKNYNAFKTRKGRTVYDGGGIQPDIEMEETKTSPIANALLKNDGIFNYATYYYYKNPNLGTKIPAITDTDYADFKQFLKSQKITFDTETEVALKNTLATAKKEKLDESIAVEYQQLLTSLQKSENALLDKNQKEIKGLLLDEIIKRYQYQEGLYNYYIKNNPEIKKAVSILNTTAEYNSILKI
>NZ_CP017479.1|WP_035633387.1|1125118_1125565_+|GNAT-family-N-acetyltransferase
MAIEWKIKAFEALSADELYDILQLRSRIFVVEQNCVYLDPDGKDKVALHLFGAFDGKIVAHARLFKPGITFDNASIGRVVVDSDYRNRKWGQELMKKAIDGIQEHFDESQITIGAQLYLKKFYESLGFVQSSEMYLEDDIPHIEMVRE
>NZ_CP017479.1|WP_035633384.1|1124130_1125108_+|DUF4837-family-protein
MNKIFFLFLFVSVFFSCSKNKDNFSRHSTGKINSISIVIDDQLWNGIVGDSIRNKFAGPVEGLPKEEPIFDINQYPTDVMEGFVTKSRTIIVVKKGAENHFWLQKNQYASPQNIFHITGKSVTALLELIDKHSPGIIEIIKKGEILAHQELLKDSVVVSKTIQNQFQLDLKVPKGYSFSVKNENFVWLKKEISSGSTSILVTQFPMKNFSHGGDMLSRVIKIQDSIGTVYIKGTVPDSNMYVDMSYPLYLLKTNLNDKLTYETRGTWRLKNSFMFGPFLNYLIMDSERNRIIYLEGFCYIPSQERRDYMHELESILKGVKITETK
>NZ_CP017479.1|WP_035633381.1|1121993_1124042_+|LysM-peptidoglycan-binding-domain-containing-protein
MRLKNTTLSFFLFFSLTVFSQGTVGKTEIVNEEKPLSYLDSIKKSFVSYDHTVKADSLWMNQISSILDIYNDVDNEINTVNIDKDIDQELPTDLLKKRLAAMDAKSPFNIEYNQGLENLIKSFLKNRRKAFANQMAVAEYYFPLFEDALSKQNVPLEIKYLAVVESALNPKAVSRVGATGLWQFMYGTGKQYNLSIDSYVDERSDPLKSSEAAAQYLTNMYAVFNDWDLVLASYNSGPGNVTKAIRRSGGQQNFWNIKKYLPKETQGYVPAFLATMYIYEYHKEHGIVPKKALVKHFATDTVMVKKEMSFAQISDLLDIPVEQLQALNPSYKRNVIPSYEDKNHYLTLPSCKVAVFTSNEDKIYAYVDYEAGKREKVNTGRKPSIDIDSSAIAMTFKGKVRYYKVKRGENLGDIAKRNGIALNDLKEWNGIRGNSIAAGKSLKIISEKESETNIIQSALSSYKSKVAVANENAINKAKESKAALDKKEDTLVAENTPNLYVVQKGDNLNSIAKKYNATVAEIKEWNHLTSQNIRLGDSLQISAPIVSTETEVAVVPAPELKDIQYEVQKGDNLFIIARKFGASLTDLKQWNNLSSNSISVGNSLVVAKNAVAINTNNASVDSFKKKDNLSASQKEINYLVQKGDSLFSISKKYPGVTVSDLKKWNNITGDDLKPGMGLKIKG
>NZ_CP017479.1|WP_070261786.1|1120336_1121524_+|phosphoglycerate-kinase
MKTLNNFDFNNKKAIIRVDFNVPLDENFNVTDTTRIEAAKPTIDTILAQGGSVILMSHLGRPKGAQDKYSLKHILKTTSDILGVPVQFASNCVGAEAQEAAKNLKPGQVLLLENLRFHDEEEAGDVAFAKELASLGDIYVNDAFGTAHRAHASTTIIAQFFPENKCFGTLLAKEIESLNKVLKNSEKPVTAVLGGSKVSSKITVIENILDKVDHMIIGGGMTFTFIKALGGNVGESICELDKLDLALDILKQAKEKGVQIHIPVDVVAANDFSNTADTQVVDVREIPDGWQGLDAGPKSLANFEKVIMDSKTILWNGPLGVFEMETFAKGTIALGNYIAASTENGAFSLVGGGDSVAAVKQFGFEEKMSYVSTGGGAMLEMLEGRTLPGIAAILE
>NZ_CP017479.1|WP_070261785.1|1119539_1119770_+|hypothetical-protein
MKTIYFLLCLCFFGKIGAQDLEKIKKADTIYIYFKKDKIKQIHHIETSRNKDKKYDTYFLIIPMDNNLFSLRILKL
>NZ_CP017479.1|WP_035633401.1|1131588_1131984_-|hypothetical-protein
MSFQPVFDEFWEKVKESITNKTYAKLTLAKTIGDTDLKNIYVRPVLNDGIFSLSVIARYKTEEIESFHSLDEAYIILSSYMNNPFLTALLFTTDNDITFKINKKRAGSIIEQAPTFKSPSDVILEMKEKGM
>NZ_CP017479.1|WP_035633403.1|1132189_1132570_+|hypothetical-protein
MTKRYQLFSLAYRIILGLFIVVFTIKSLFFPDPSADNAGVWSLLFSIVTLPAITIFHRLGNENRYKIIVQFFVCALVLISLSFLLFLFLTPEDGNLLVNSVFVITIFVNAGLLFYLIQDKKFNHNG
>NZ_CP017479.1|WP_035633406.1|1132593_1133175_+|TIGR00730-family-Rossman-fold-protein
MKRITVFCGSSSGTEEIYTSQATLLGEILAKRNIELVYGGANVGLMGAVADGVLNHGGKAIGVLPNFLRSKEIAHKQLTELILVDTMHERKTKMNDLCDGVIALPGGFGTMDELFEMLTWAQLGLHKKPIALLNIDGYFDALIVFIQTMVNKGLLKEANQQMLLVSDSIDELLDKMTNYVPPTVGKWISKENI
>NZ_CP017479.1|WP_035633409.1|1133174_1133732_+|hypothetical-protein
MAIDKPNQMKYKFLVLIAVMIAIVGCQKNEKKSISQPDKDTKELSGKGYSIQYDSSFRLDESGRNGTEFYLFTPTAPGDDFSENINLIIQNLGVLKYDLNQFITLSEKQIEANGKLIESVRKNENGQEYHILIFETKMNGFDLKFLQYDFVKNDKAYVLTFSAKKDEFENHRKSIEKVMNSFGLE
>NZ_CP017479.1|WP_035633412.1|1133883_1135272_-|hypothetical-protein
MKKILLFFILIQCNSLLSQTVLATAPLEFKKSKDYRQVINAENTSTHEVFVFASDKETLTILKYNSALFLTNQFSLPRPDTNYKLLSGYSFNGNGNPTLYWSNADFTKILAVQYDLDTKTNIAQISYEQQFFNQTIITQFQANDTFYILTQKHFEEKLMLYVFKDGKKEEKTLDFGSFKFKNSKNQPVSFSKILEVLPIEKIETNQFNPLFKGSEKTKLYALKNRLLLTLDHDDNETQAFDIDLATFEIKEKHFHKSQTKNYVSLSNSYYHEGKIYQIKVNAEELLFEIKDYNTGDSIKSITTAKTSAIPYKTSPLWLQLEGQRPKEIKNTEKFLHQLVYLEVGLTVYKTPKAILITMGGTGNIQFTDVANTFSSNDPSVSDLMYHYIPTTAYFESLFDKKLENNRQDQEPLAVDFISRFTQENPDITLVNVMRYNNYYILGYYDNDNKEYVMRKFIDGFDR
>NZ_CP017479.1|WP_035633414.1|1135342_1135972_-|chloramphenicol-acetyltransferase
MKKLLDLDNWNRKEHFLFFKQMQEPFFGATVTIDCTKAYDTAKSLGTSFFIYYLHKTLVAVNAFESFKYRMENTHIFIYDRIDGSATISRADGTFAFSLIEYHPDYAIFEQNAIAEIERIQGTTGLFTREFKDDNLIHFSAIPWLNFTSLSHARNMTYPDSCPKISFGKMTVSKKGKRKMAMSIHAHHGLMDAMHVGQMVDYFQEIMNQ
>NZ_CP017479.1|WP_035633417.1|1136074_1136782_-|HAD-family-hydrolase
MLNNKIPNLKVIAFDADDTLFVNEPYFQETEEKFCGLMRDYLSHQDISQELFRIEIDNLKIYGYGIKAYILSMIEAAMKISNNTISVEVIEKIIEYGKELLDKPIELLDGVEETLQTLHGKYKLVVATKGDLLDQRRKLHNSGLGKYFHHIEVMSDKQEQDYADLLKRLEIKPEEFFMIGNSLKSDVLPVLALGGYAVHIPFHTTWAHEKIDHKVEHKNFAAFEKITDILPLLGT
>NZ_CP017479.1|WP_035633419.1|1136863_1137745_-|DMT-family-transporter
MKITKPRLALICGILCISIFPILIKLRLAPGLISAFYRMTFAIILLLPYVLLSGKFKLPNLKLTLLAALCGILFSSDVAVWNIAIQDSSATQASLLTNLSPVWVGIGSFLFLKSKPAINFWIGTIVALFGMAIFVGFEFFIEMNFNQAFLFAVLSGILYSIYLLVSKNVLSEVDVLSFMTISLSASSIYLGILCYSLNEPFTGFSNTGWLVLVLQAVICQLCAWLSVSYAIKHMRATRVSLSLLSQAVITAVLAWFFLEEKITLQMIFGGIVLLFGIRITFYKKTITLKKFFS
>NZ_CP017479.1|WP_035633421.1|1137771_1138458_-|RloB-domain-containing-protein
MDRKRYTLDDYNKKESFLDATRFFIVYEGEDKEPKYFGTFNNLFFEPKKASILHVFEKDTNVIGSQPKKLIERAKSFIENPPNYLPVTPSAEDKFRFVLDVDQHPKEEYPELKQYCESLIDADLFISNYCFEIWLLFHLDEPENISCTTSKESKTELGTKHTYSKIKNYPKGYLTSDYILKAIKRAEKADINKEDYFPSEKSTKVYLLMKELLKYSLINTQVIDPKIV
>NZ_CP017479.1|WP_051877615.1|1138458_1139826_-|ATP-binding-protein
MLIRFVVSNFLSFKEDTEFNMLKSKGNGSRKLTNHIIKTNSGIEVLKNAAIYGANAAGKSNLIKAILYLKHIIFGEDNKILAPQSKRFRIDNSYKNKPTTFRIELEFEGKHYDYAIEIFKGKIKQEWLYLINSITDDSEELIYKRDNLNVVFGEYLKNSKDIEYAQKHLLKTLQENQTVLDACFATIEDNDILNKLYIAFSKINIVLPESKSVFYSESILTGKLSSEFAKNLLIKSKTGIEDLIIHEINADNFFSYSQEDFKRELIDELESLIEENKPGKNNACIPFEINRQINVFRKKKGKYTVSILRAKHDNSEELFDFDEESDGTNRLFELSPAFEDLLIEDDHIYIIDELERSMHPILAKELLKLYSENSKSKSQLIFTTHESHLLDDNLLRRDEIWFTEKKSNGSTELYPLSNFNPRGDKVLERGYLEGRYGGIPFLGDFSKLLIGENQI

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Crispr_ID: NZ_CP017479_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_5

1230644-1230738

Orphan

Consensus_repeat	Method
TAAACCTTAAACCGATAAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_5

>merge|NZ_CP017479|5|1230644-1230738|CRISPRCasFinder
TAAACCTTAAACCGATAAATTTTTTTTTTGAACTTTGTATTATCGGTTTAAGGTTTGATACCTATATACACCTAAACCTTAAACCGATAAAATTT

>NZ_CP017479|5|5|1230644-1230738|CRISPRCasFinder
TAAACCTTAAACCGATAAATTTT	TTTTTTGAACTTTGTATTATCGGTTTAAGGTTTGATACCTATATACACC
TAAACCTTAAACCGATAAAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035633439.1\|1231921_1232203_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP017479.1\|WP_035633436.1\|1232312_1233116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_156101370.1\|1235253_1235688_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035638613.1\|1239553_1241245_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP017479.1\|WP_081907216.1\|1220174_1220774_+\|MerC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377004
NZ_CP017479.1\|WP_035633454.1\|1222079_1224017_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP017479.1\|WP_035633448.1\|1227833_1229078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035638607.1\|1235938_1237126_-\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP017479.1\|WP_035633456.1\|1220788_1222078_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP017479.1\|WP_035638620.1\|1238868_1239570_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP017479.1\|WP_035633442.1\|1229529_1230573_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633451.1\|1225259_1226507_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP017479.1\|WP_035638616.1\|1243561_1245109_-\|alpha-N-arabinofuranosidase	unknown	unknown	gnl\|CDD\|226064
NZ_CP017479.1\|WP_035633558.1\|1226563_1227772_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP017479.1\|WP_035638610.1\|1237241_1238753_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP017479.1\|WP_035633452.1\|1224003_1225257_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|367035
NZ_CP017479.1\|WP_051877842.1\|1241410_1243378_-\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|369609
NZ_CP017479.1\|WP_035633459.1\|1219678_1220134_+\|heme-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379587
NZ_CP017479.1\|WP_035633445.1\|1229254_1229482_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP017479.1\|WP_035633433.1\|1233250_1234603_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035633439.1\|1231921_1232203_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.92213e-11
NZ_CP017479.1\|WP_035638616.1\|1243561_1245109_-\|alpha-N-arabinofuranosidase	gnl\|CDD\|226064	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].	1.85766e-178
NZ_CP017479.1\|WP_035638613.1\|1239553_1241245_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP017479.1\|WP_081907216.1\|1220174_1220774_+\|MerC-domain-containing-protein	gnl\|CDD\|377004	pfam03203, MerC, MerC mercury resistance protein.	3.52823e-14
NZ_CP017479.1\|WP_035633454.1\|1222079_1224017_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP017479.1\|WP_035633456.1\|1220788_1222078_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	5.28732e-177
NZ_CP017479.1\|WP_035638620.1\|1238868_1239570_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	6.09495e-160
NZ_CP017479.1\|WP_035633445.1\|1229254_1229482_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00687059
NZ_CP017479.1\|WP_035633451.1\|1225259_1226507_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	1.96113e-50
NZ_CP017479.1\|WP_035633558.1\|1226563_1227772_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	1.15799e-65
NZ_CP017479.1\|WP_035638610.1\|1237241_1238753_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP017479.1\|WP_035638607.1\|1235938_1237126_-\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	6.68017e-180
NZ_CP017479.1\|WP_051877842.1\|1241410_1243378_-\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|369609	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.	1.24028e-176
NZ_CP017479.1\|WP_035633459.1\|1219678_1220134_+\|heme-binding-domain-containing-protein	gnl\|CDD\|379587	pfam14376, Haem_bd, Haem-binding domain. This domain contains a potential haem-binding motif, CXXCH. This family is found in association with pfam00034 and pfam03150.	6.78356e-60
NZ_CP017479.1\|WP_035633452.1\|1224003_1225257_+\|TolC-family-protein	gnl\|CDD\|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	3.624e-13
NZ_CP017479.1\|WP_035633433.1\|1233250_1234603_-\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.53469e-19

>NZ_CP017479.1|WP_035633442.1|1229529_1230573_-|hypothetical-protein
MRNLKLSKRRNLVKYCRCGKSNKDGKFVPFEGYTDYGHCHSCCKTFFPDVGTIVEPIDIKYKKEIPLPPTYYSPELVESTVLDDAISNFIKFNRKLFPDDIIIENINKYFVGTWGGKVVFWEVNQQWKAVYGQVMEYDPETGKRSYLENGDADITSMRVSLKLWKFKDDRCLCGLHLINENTKIVAFVEAYKTLFIMSMVKREITWVSGGNKGSFKYDLLKPIKHCTIIAFPDKGEYDDWVQKAIELNKKGFKIIVNDFIENRDYPKGTDLADVYIELRTKSNTVTESTISYTEKFPEKNDGEFSEESLEVFRMFQDRKIKRLEMTKEESYKAIQDFIDHNTDTYRL
>NZ_CP017479.1|WP_035633445.1|1229254_1229482_-|helix-turn-helix-transcriptional-regulator
MSKETIQEAIGKFIYNERKKQKLSLTALSIKVYKNKCSATRIGNIEKGKIRDCSVNTIAELIYALGYDLREIFKE
>NZ_CP017479.1|WP_035633448.1|1227833_1229078_+|hypothetical-protein
MNNLSQIIQQYKTDKESVHNTWFVDNDQRLKAFRTIRRGVLQVIDDIKSKTFPNDFKGSSLEFVLSCIAEQKQIFVGVAHPFYWKPKLRIPDIYENQNNKIAFGQFLENCINAKTEEQVVKEIVRLDNLKIKGLGPAVASILYFLHPTWFPPFNTAILNGFNFLFKDKKKLGSWSEYLKIRETLIEINSKHKSELSNDLGAIAGLCFEIGTQKMLIGNDEYLSEEERNKFEKNILKRQKEIQEEKQEENLHNEMQYHLLKIGVSLGFDVTPASNDKSKSFNGQSFSFISINKFPELPCDKDTQNTIKLIDVLWFEKGTNNIIGAFEVEKSTSIYSGILRLSDLYFSISDGDEVFYIIIPDSREKDVIQQLNRPAIKNSKMIIKYILFSELRANCDAICKFGSDHSIMDKIAKSI
>NZ_CP017479.1|WP_035633558.1|1226563_1227772_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKISLLSLLFTTMIACNTKNKEDHSGHKTTAEDVFYTCSMDPQVKEDKPGKCPICHMKLTPIKHDNSEANEISLSKQQIRLGNITTQTISKSQSSLEQNYTGVLAINQEKANTVSARAMGRIDKLFFKTIGEYVKKNEPVYSLYSEDIAIAKQDYLTAYKQLAMPGDFGKNAQNMLKSAKQKLLFFGLTNAQIESIKTKAEVSPNTIFHSTASGYISEIIATEGSYAMEGSAVIKLADLSSLWLETQVNVSYAKNVHPGQIAKVVFPDFPDKIINAKVSFINPEINPDTRLLLVRLEIPNHDSQLKPGMQAVVKLTQSNVKGLFIPVDAVIREENASYIWVEKRPGVFENVMVETGAEVEGMIEIKSEIDSSKKVVITGAYAINSEYKFRKGSDPMEGMKM
>NZ_CP017479.1|WP_035633451.1|1225259_1226507_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSKYTKYGLVGIAILIVGIAIYFLATKSGNHSEMEHQNEVYTCSMHPEVIKDKPGSCPICGMALVKKITEDHSDTNDSIDDLLKPTDKFVVGNYQTTTAKDTIIRSNISLPGIVTYDSNSAVNISARINGRIEKMYVNYKYQRVTKGQKIFELYSPELLTEQQNFIYLISNDSQNTSIINSAKQKLLLYGMSNNQISALASAKKVNPVIAVYSPANGIITGTEKMTNPDTSSMQNVSNTTEALDVKEGSYIKKGEVVFKLMNTDKVWGIFNVLQGYSSLIKINQSIDITSELEEKNTIYAKINFVETQLNPTDKTNRVRVYLNNANIKLPIGTRLQGSVQLNSTKAIWLHKQALVSLGNKKVVFIKLDNGFKAKAIQTGLEIDDFVQILEGLSVGDTIAQNAQYLIDSESFIKTE
>NZ_CP017479.1|WP_035633452.1|1224003_1225257_+|TolC-family-protein
MQNIKFHIVLSCLILCVAISKAQTLTLDNVLSTINTNNPQLKMYDADIQSMDASAKGARSWMPPQVETGLFMTPYNTKMWKADEMNPGMGSYMLGVTQMIPNASKLNANENLMKAMSSVENENKNFTLNQLNALAKTYYYEWIIIRKKIKIAQDNLQLLDYMIKSMEIRYQYNMDKLPSYYKAKSQYATLQSMIVMLENDISQRKYMLNTLMSRDKNVDFDIDSNYEIKDFNLFETDLSSYINNRSDIKAIDKTKEINNYKIEVEKVSTRPEFGVKYDHMFAFGNQPQQFSLMGMMTIPMSWSTKMNKANIESYRLKNESLDWQKQMIANEVNGMIKGMNAEFLNLKKQYQITQDNIIPALKRNYDTAILAWQNNTGDLFVALEAWEAMNMTQIDALDKLKSILTTQVEIEKQLEVK
>NZ_CP017479.1|WP_035633454.1|1222079_1224017_+|efflux-RND-transporter-permease-subunit
MKDKLKNIFKKENDPLSSEEKRKLIEASSKLVGPGVFYSTIIVIASFLPVFLLTGMEGKLFGPLAWTKSFILIVDAFLAITLAPVLISLLLKGKLRPENKNPINRKLESIYTPILTLCLKWRKTVLAVNIVALLIGILMFTRLGSEFMPPLDEGSVLFMPVTLPDVSNSEVKRILQIQDRLIKSIPEVAHVLGKAGRANTATDNSPISMIETIVLLKPSNEWREGKTKADIINEINNKLQIPGVTNGFTQPIINRINMLSTGIRTDVGIKIYGESLDTINALSQKIKMALDGTSGVKDLYSEPITGGKYIDIEPKREVIGRYGLSIDDINAVVEASIGGMKLTTTIEGRQRFSVNARYAQEYRNSIEALKKLQVQTMEFGPIPLETVADVKISDGPPMINSENAMLRGSVLFNVRDRDLGSTVKEAQRKLNEMITKMPKGYYVEWSGQWENQIRANKTLGIILPIVVVIIFLILYFTYHSMKEALITMITVPFALIGGIFMVYFYGINLSVAVAVGFIALFGLAVETAMLITIYLNEAMNKMVEKYGNSNETLTEEIVREYIIDGSAKRLRPKLMTVSVSLFGLIPILWATGTGADVMLPITVPLIGGTITSTIYVLLVTPVVFEMVKLHELRTKGKINLIDAKH
>NZ_CP017479.1|WP_035633456.1|1220788_1222078_+|efflux-RND-transporter-permease-subunit
MVEKLISFSLRNRFIVLLISAGLFAWGVYSVQQNPIDAIPDLSENQVIVFTEWMGRSPQVIEAQVTYPLVSNLQGIPKVKNIRGASMFGMSFVYIVFEDNVDIYWARTRVLERLNYAQRLLPQSVVPTLGPDGTGVGHVFWYHFKANGMDLGEQRALQDWYVKFALQTVPGVAEVASFGGFEKQYQLVLDPLKMQHYKVSMMEVMNAVKANNNDVGGRKFEMSDMSYIIRGLGYIKNIKDVEDIAIKNYNSIPVRIKDIGSLQMGGDLRLGIFDENGSGEVVGGIVVMRYGENADNVIKAVKAKMKEVEKGLPEGVTFKTSYDRSELIEKAIDSVKGTLIEEMIAVSIVVLLFLFHWRSALIILIQLPISVAIGFILLEAFGISSNIMSLTGIALAIGVVVDDGIVMVENAYRTISEKQEEMDNNQHLT
>NZ_CP017479.1|WP_081907216.1|1220174_1220774_+|MerC-domain-containing-protein
MNINNNIDKLGTLGLFLTAVFSPCCFPLFAFIGSVFGLGSFELFGGWTMWIFQTMILVSISGLVISYRKHQNLYPLLIAIPSGIIILFGYYFSINYSHVYIGMFGLLIGTVINYYSNKMVSNCKTCIVFNGKSVELKSTLTCPNCGHKKDEMMPTDACQFFYECENCNTVLRPKQGDCCVFCSYGNIKCPPIQAGDKCC
>NZ_CP017479.1|WP_035633459.1|1219678_1220134_+|heme-binding-domain-containing-protein
MKNIFKKILGIGLIIFLLLQLYQPARNVAFEQDLTADFSKAYHVPSKVETILRNSCYDCHSNNTNYPWYSNIQPVRFFLENHIQNGKKDLNFDEFGTYSKRKQNSKLKAISKQIKLNEMPLRSYTLIHKNAMLSTGQKQEVINWINSLKDN
>NZ_CP017479.1|WP_035633439.1|1231921_1232203_-|helix-turn-helix-domain-containing-protein
MSATVQFIQYDAEKLEAKLMAGVDSKLDEFLKHFKPVQPAEYLTRQQVAQMFDVDLSTVHNWCKSKKLNPLGIGSRVYFLRSEIEASLIPLNK
>NZ_CP017479.1|WP_035633436.1|1232312_1233116_-|hypothetical-protein
MKESDYLRLIGETYFETIFMVGSVTKEPRNEVRKKLFRQILMRSQKVAQIKYFVTNDEFLFQCQKAVETLRIYCEKKTQEIRKKLPLLTQEEIDDLKNGWYYIDMEFLIPETVKKVNGKTTYTNVILCNNDFKFIEECFENFSFEPLDRYRPEPPDLSNTPSFEFANQFDSVNETIVYEYFKKNLVDTKYLSANDLNLFLELAFEKMKIPQEKMSFNLKTQNRIVKIFYNYYKIIAGKPYGKQQKYLNLLRDYFIGFENLDLKNFSK
>NZ_CP017479.1|WP_035633433.1|1233250_1234603_-|site-specific-integrase
MASINFRLRSSANKNVSIKVYTSLGRGNMIEVSTGFTINPKDWSDNTDRPKQNTAENKLLFNNLKKLESFLFDSINAVMSESVVIDNFWLETKIKECFNRVKKTDEGLITNYIQDLIDNADTRKVKVKGGFKHGISLSRKNSFISTKQMLSEYEKKTKKKIHFIDITQGFIDGFERWLLKTKKYAVNTASKHIANIKTVCNEAEKKGIQVNSYAKQINIVSESDDDRYIQTLSFNELDEIRKADITSEAYQNARKWLLIGCEIGQRGGDLLNITKDNIRYKNGKMYLDLIQQKTKKAVTIGIISPYIIDLLENSFPYKISTQKLNDHIKKVCEIAKINQMTEGKIFDAKTGRKEFKEYEKYKLITTHSFRRSFCSNYYKKIPTPVLMGISGHSKESIFRVYINAPEDTDENADLFMKFSDLIQKQREAEQKKTEQEPKPQFTVIKNGTNE
>NZ_CP017479.1|WP_156101370.1|1235253_1235688_+|hypothetical-protein
MKKISLFFVFALFCCASVFGQARKELNFGLIGINYEIPVSRDITIAPGVGTDFNLDWINLGVKGNYYFDHAFGISDPAWDVYGGLNLGYSIYNGDNDHDNSSDLNLGLQVGGRWFWNDKWGLYVELAGGNISGFSPAIGLTVKL
>NZ_CP017479.1|WP_035638607.1|1235938_1237126_-|galactose-mutarotase
MNLVKRCIYGISILSLASMNVQCKGEKKTDGAETALEANAADSVSIAKSVYGKTDKGVQIDQYTLKNHKGMEVSIITFGGRISSLKVPNKDGKSEEVVIGFNSLEQYQKDNPYFGALIGRFGNRIAKGKFTLDGKEYSLAINNEPNALHGGPLGFHNVVWTAEEAKGGDTASLKLKYVAKDMEEGYPGNLTVYVTYTLNKDNALDVSYEATTDKKTVVNLTQHSYFNLSSDFTKPILDHEIMIDADKLVPVDATLIPTGQLTDVTNTPFDFRKPKLVGKDINANDDQLKKGLGYDHCWVLNNQNKGDRLVASAYYPANGRLLEVYTDQPGIQFYSGNFLDGTLPMRNGGTYAHRTGFCLETQHYPDSPNQKNFPTTVLSPGETYKTKTTFKFSVK
>NZ_CP017479.1|WP_035638610.1|1237241_1238753_-|L-arabinose-isomerase
MKIDISQKEVWFVVGSQELYGPETLKKVAEHAAIMAKGFDDAAQIPVKVVCKDTLKSPKQVLDLCLEANSAKNCIGIITWMHTFSPAKMWIGGLKILNKPLCHLHTQYNAEIPWATIDMDFMNLNQSAHGDREFGFMMSRMRKKRKVIVGHWQEDRVLTKLGNWTRVALGWNELQNLKVARIGDNMREVAVTEGDKVEAQIRFGVSVNGYDSSDVTKHIEKVTDKQLADLLAVYEASYNLTNDLKEGGAKRQSLVDAAKIELGLRAFLEEGGFGAFTDTFENLGAWKQLPGIATQRLMADGYGFGGEGDWKTAAMVRALKVMNIGLEGGTSFMEDYTYHFTPQKSYVLGSHMLEICPSIADGKPACEVHPLGIGGKEDPARLVFNSPAGDAINVSLVDMGTRFRLIVNEVTAVKPMADLPKLPVARVLWDCKPNLDVAATAWILAGGAHHTVYSQAVTTEFMEDFADIAGIELVVIDNNTTIRNFKDTLNANEAYFHLFQHGL
>NZ_CP017479.1|WP_035638620.1|1238868_1239570_-|L-ribulose-5-phosphate-4-epimerase
MSSIYKDLKQECYEANMQLNALNLVVYTFGNVSAVDRKNGVFAIKPSGVPYEDLKPEDIVIVDFDNNIIEGNMRPSSDTKTHAYLYKNWPNIGGVAHTHATYSVAWAQSQCDIPIFGTTHADHLTADIPCAPPMADALIEGNYEHNTGIQILDCFKEKNLSYEEVEMILIGNHGPFAWGKNAAKAVYNSKVLEVVAEMAYLTLQINPNAPRLKDSLIKKHYERKHGKDSYYGQ
>NZ_CP017479.1|WP_035638613.1|1239553_1241245_-|ribulokinase
MKNYVIGLDYGSDSVRAVLIDTENGQELASNVCDYKRWKNKEYCNASINQFRQHPLDHIEGLETTIKYVVENSKVDSTLIRSICIDTTGSSPVPVAEDGTPLALTKGFEHNPNAMMVLWKDHTAINEANEINELAANWGGENFTKYEGGIYSSEWFWAKILHVAREDEAVKQAAYTWMEHCDLMTYLLIDNKDLKSFKRSRCAAGHKAMWHEDWNGLPPVEFLEKLDPYLATLRGNLYDETYTSDLVAGNLNQEWATRLGLSTDTVIAVGTFDAHSGAVGAKIAEHTLVRVMGTSTCDIIVDTKESIGTKTVRGICGQVDGSVIPGYIGLEAGQSAFGDVLAWYKELLLWPTENLLTASTLLTNEQKEQLKAEISNNLIKELTIEAEKIPLTESIPFALDWINGRRTPDANQELKSAISNLSLGTKAPHVFKSLVNAICFGSKKIVDRFEEEGVRIDTVIGIGGVARKSPFIMQTLANVLNKPIKVALSDQAPALGAAIYAAVAAGIYPNVIEASQKMGSPFESEYFPQLDKVAAYNKLLLAYEQLSAYADPSIKKQHNELYI
>NZ_CP017479.1|WP_051877842.1|1241410_1243378_-|glycoside-hydrolase-family-127-protein
MKLSNLKNHLLYFFIIFFPLLGKLNAQKQDTKNTGYIITPVNIRNVKITDAFWLPIIKKVQEKTIDYAIHKCEEEGRLDNFLIAGGKMKGEVKGQMPFDDTDVYKIIEGASNTLISEPNPKLEKKLDSLIAIIKVGQEKDGYLTTWRTINPAKPPAKWVPVIEGKRWESLQISHELYNPGHMIEAAVVHFEATGKRNFLDIAIKTADMLVRAFGDNPDQVHGVPGHQIVETGLVNLYRITNNKSYLKLAKYFLDNRGNPKNHKLYGAYSQDDIPVIRQKEAVGHAVRAMYMYAGMTDIAAIYNDNDYQNAVNNLWTNMVNKKMYITGGIGAKHEGEAFGKNYELPNLTAYNETCAAIGNVYWNHRLHNQTGNSEYFDVIERSLYNGLISGLSLDGKQFFYPNALESDGVYKFNRGACTRQSWFDCSCCPTNLIRFIPSIPGLIYSTGKNTLYVNLYASNTAKITLDKTELQIAQQTNYPWDGKITLTVSPKKEGEFTIKLRVPGWARNQVLPGDLYSYKSASAAVSSLTINGTPLLSQEKEGYFTITRKWKKGDIINLNFLMEVKQVVTNTKVENNIGKVALEYGPIVYAIEEIDNATAFDKITIAPHDTFKVTKENNLLEGVNAIQNSKLKAIPYYSWSNRGIGKMKVWIDEQK
>NZ_CP017479.1|WP_035638616.1|1243561_1245109_-|alpha-N-arabinofuranosidase
MKKTLLFLSIVALCCQNTFAQKETTVISIKNTENTPTINKNIYGHFAEHLGRCIYGGFFVGDTSKIPNTAGVRNDIIAALKDLKIPNLRWPGGCFADTYHWKDGIGPKENRPTIVNKWWGGVTEDNSFGTHDFLNMCELLGAEPYLSGNVGSGTVQELSDWVQYTNFSGKSPMSDLRKKNGRTEPWKVKYWGIGNEAWGCGGNMTAEYYAGEYRKFATFISDWENTGGITRIASGSNSADYNWTEVLMKNIPLNMLGGVGVHHYAVINWNKKGDGVNYTEEQYFKTMKSALKMEELVTKHSAIMDKYDPQKKVAMIVDEWGGWYEVVNGTNPGFLYQQNTMRDAVLAGSTLNIFNNHADRVRMANLAQCVNVLQAVILTDKTKMILTPTYHIMKMYSVHQDAKLLPVSFQSPLYTVNGETLPAISASASKDKNGAVHISLVNVDAKNNNKIELDVNELGIKNVTGTIITSAKLQDYNSFETPNKIVPTVFKDFANKKGKLEINIPPFSVIMLEGK

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Crispr_ID: NZ_CP017479_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_6

2276617-2276696

Unclear

Consensus_repeat	Method
GAGACGTTGCATTGCAACGTCTC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP017479_6

>merge|NZ_CP017479|6|2276617-2276696|CRISPRCasFinder
GAGACGTTGCATTGCAACGTCTCATATTTTTTTGTAACGGAAAATTATTCATTGCTGGAGACGTTGCATTGCAACGTCTC

>NZ_CP017479|6|6|2276617-2276696|CRISPRCasFinder
GAGACGTTGCATTGCAACGTCTC	ATATTTTTTTGTAACGGAAAATTATTCATTGCTG
GAGACGTTGCATTGCAACGTCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035641073.1\|2272136_2272787_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP017479.1\|WP_035641065.1\|2275253_2276018_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|179371
NZ_CP017479.1\|WP_081907385.1\|2288570_2289989_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133045
NZ_CP017479.1\|WP_035641081.1\|2267538_2267835_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035641055.1\|2279147_2281076_-\|membrane-protein	unknown	unknown	gnl\|CDD\|377873
NZ_CP017479.1\|WP_156101396.1\|2266723_2267284_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035641057.1\|2277760_2279014_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP017479.1\|WP_035641089.1\|2263770_2265063_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP017479.1\|WP_035641071.1\|2272966_2273425_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP017479.1\|WP_035641078.1\|2268062_2270858_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP017479.1\|WP_035641087.1\|2265103_2266573_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP017479.1\|WP_035641108.1\|2276707_2277355_-\|phospholipase	unknown	unknown	gnl\|CDD\|223477
NZ_CP017479.1\|WP_035641049.1\|2284810_2286076_-\|YaiO-family-outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|275183
NZ_CP017479.1\|WP_035641050.1\|2282496_2283846_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP017479.1\|WP_051877926.1\|2284209_2284632_-\|response-regulator	unknown	unknown	gnl\|CDD\|381116
NZ_CP017479.1\|WP_035641060.1\|2277421_2277751_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035641053.1\|2281257_2282364_+\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP017479.1\|WP_035641068.1\|2273691_2275155_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	unknown
NZ_CP017479.1\|WP_035641076.1\|2271252_2271837_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183566
NZ_CP017479.1\|WP_051877925.1\|2286088_2288497_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035641073.1\|2272136_2272787_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	3.35493e-83
NZ_CP017479.1\|WP_035641065.1\|2275253_2276018_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|179371	PRK02113, PRK02113, MBL fold metallo-hydrolase.	4.10099e-96
NZ_CP017479.1\|WP_081907385.1\|2288570_2289989_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	8.73672e-52
NZ_CP017479.1\|WP_035641055.1\|2279147_2281076_-\|membrane-protein	gnl\|CDD\|377873	pfam07584, BatA, Aerotolerance regulator N-terminal. These proteins share a highly-conserved sequence at their N-terminus. They include several proteins from Rhodopirellula baltica and also several from proteobacteria. The proteins are produced by the Batl operon which appears to be important in pathogenicity and aerotolerance. This family is the conserved N-terminus, but the full length proteins carry multiple membrane-spanning domains. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress.	1.51176e-23
NZ_CP017479.1\|WP_051877926.1\|2284209_2284632_-\|response-regulator	gnl\|CDD\|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.92719e-31
NZ_CP017479.1\|WP_035641057.1\|2277760_2279014_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	3.91246e-143
NZ_CP017479.1\|WP_035641089.1\|2263770_2265063_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	4.05334e-45
NZ_CP017479.1\|WP_035641071.1\|2272966_2273425_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.21465e-71
NZ_CP017479.1\|WP_035641078.1\|2268062_2270858_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP017479.1\|WP_035641087.1\|2265103_2266573_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.25822e-19
NZ_CP017479.1\|WP_035641108.1\|2276707_2277355_-\|phospholipase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.31422e-33
NZ_CP017479.1\|WP_035641049.1\|2284810_2286076_-\|YaiO-family-outer-membrane-beta-barrel-protein	gnl\|CDD\|275183	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family. Members of this family share a domain of bacterial outer membrane beta barrel, up to the protein C-terminal residue (usually Phe or Trp). The member YaiO was shown experimentally to be localized to the outer membrane. [Unknown function, General].	3.71338e-45
NZ_CP017479.1\|WP_035641050.1\|2282496_2283846_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.72521e-122
NZ_CP017479.1\|WP_035641053.1\|2281257_2282364_+\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	3.24029e-139
NZ_CP017479.1\|WP_035641076.1\|2271252_2271837_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|183566	PRK12513, PRK12513, RNA polymerase sigma factor; Provisional.	1.59425e-41
NZ_CP017479.1\|WP_051877925.1\|2286088_2288497_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	4.84066e-57

>NZ_CP017479.1|WP_035641065.1|2275253_2276018_+|MBL-fold-metallo-hydrolase
MKVYFLGTGTSQGIPIIGSDHEVCKSIDFKDKRLRVSAWITWEGYSYVIDCGPDFRQQMLASNCRKIDGILFTHEHADHTAGLDDIRPFNYRQGDIPIYAHKRVLVDIKKRFEYIFETENKYPGSPSVKAIEIFDNVPFSVGNKMAIPITVMHGKLQVFGFRIDDFAYLTDVKTIAESEMEKLKGLKVLVVNALREELHDTHFNLQEALDFIALLKPEKAYLTHISHMLGFHEVVQKKLPDNVFLAYDNLEITL
>NZ_CP017479.1|WP_035641068.1|2273691_2275155_-|nicotinate-nucleotide-adenylyltransferase
MEPKKIKLKGDKVIEQIPSLKDKALRINLNENIYGTFAEIGAGQETVRHFFRSGGSSGTIAKAMSAYDKDFSDAVYGIESDGRYVTESRLKKMLAFEVELIEERLSRTKHPNKMFFSYANTVATIDFAKQFKGHGWVGIRYQLDPSEDYNEIIIHIRFKETDSRLQQETLGVLGVNLIYSAFYKYNDPKKLLRYLYDHLDKDQLEIDTINFSGPRFAEVDNRLMSLQLVKNGMTDAVMFNPQGKNILPAAVLYKKNILAFRGSFRPVTKVNMDMYKESLKMFLEENKVEKDNTLVVFEITLSNLRSDGEIDERDFMDRAELLCSLGQTVMISNFQEYYKVVEYFSNYTKARMGLAMGVNNLVDIFDEKYYRHLSGGILEAFGKLFYRDMKVFLYPMLGEDGEIINSKNLKVHPRMKELYKFFKFNGKVVDIENYNPEILEVFSREVLKMIGAGKPGWEQMLPPGVPEIIKEKHLFGYHTDTILETKN
>NZ_CP017479.1|WP_035641071.1|2272966_2273425_+|thioredoxin-dependent-thiol-peroxidase
MTTIKIGDKAPQFSGVDQNGKTHQLADYKGEKLVVFFYPKASTPGCTTEACDLRDNFERFRANNYALLGVSADSAKAQAKFSDKYDLPFPLLADEDKSVINVFGVWGPKKFMGREYDGIHRTTFVIDENGIIEDVITAVKTKVHAEQILGSK
>NZ_CP017479.1|WP_035641073.1|2272136_2272787_-|endonuclease-III
MTKQERVTFVINTLNELYPTIPIPLDHKDPYTLLIAVLLSAQCTDVRVNQITPLLFAKADNPYDMIKMSVEEIKEIIRPCGLSPMKSKGIHGLSKILIEKHNGIVPQSFEALEELPAVGHKTASVVMSQAFGVPAFPVDTHIHRLMYRWNLTNGKNVVQTEKDAKRIFPEELWNDLHLQIIWYGREYSPARGWNLEKDIITRTIGRKSVLSEFSKK
>NZ_CP017479.1|WP_035641076.1|2271252_2271837_+|sigma-70-family-RNA-polymerase-sigma-factor
MVSLQKSDALLVKDYMSGDESALAVLIKRHESKVYGFIYSKVADREISNDIFQDTFIKVIKTLKTNSYNEEGKFLPWIMRIAHNLIIDFYRKSKKMPLFRETEDFSIFSIMSDDSLTIENRIIADQVEVDIRRLVEELPTDQKEVLIMRMYQDMSFKEISETTGVSINTALGRMRYAILNLRKIIEKHQIVLTN
>NZ_CP017479.1|WP_035641078.1|2268062_2270858_-|excinuclease-ABC-subunit-UvrA
MPIDISKLDPKKNIIIKGAQVHNLKNVDVAIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGRLDKPKVEYIKGIAPAIAIEQKVNTTNARSTVGTSTEIYDYIKLLYARIGRTYSPISGREVKKQTVTDVVNEVKNFEPNSKWLLLAPIHLEEGRQLEEKLKVLLQQGFARILVNNEMVRLDDFTPAEQHSLDHKDILLIIDRIVVKDEEEFYNRLSDAVQTAFFEGKGICYLQELNSDTKLSFSNNFELDDITFLEPNVHLFSFNNPYGACPVCEGYGNTIGIDADLVVPNTSLSVFENAIFPWRGESMSWFRDELVNHAYKFDFPIHKPFFQLTDEQKDLIWTGNKYFQGLNDFFKELEEKNYKIQNRVMLSRYRGKTKCHVCKGKRLRIEASYVKINGKTVSDLVDLPIKHLVDFFKNIDLNEYEKQIAKRLLIEINNRLSFLTEVGLNYLTLNRNSSTLSGGESQRINLATSLGSSLVGSMYILDEPSIGLHPKDTERLINVLLSLRDLGNTVIVVEHDEDIMKAADMIIDIGPEAGTFGGNLVAQGTYDEILRSTSLTAQYLNGDLEISVPKKRRPFKNFIEIKGARENNLQNIDVTFPLDVLTVITGVSGSGKSTLVKKILFPAMQKKLDNAGEKAGQFSELSGSFSQIKHIEYVDQNPIGRSSRSNPVTYIKAYDDIRELYAKEKLSKVRGYQAKHFSFNVDGGRCETCKGEGSINVEMVFMADVQLPCETCNGKRFKKEILEVTFDGKNINDILTMTIDDSIAFFEKNKQTKVIQKLQPLQDVGLGYVQLGQSSSTLSGGEAQRIKLASFLVKGTIKEKALFVFDEPTTGLHFHDIKKLMASFDALIEKGHSILVIEHNLDLIKCADWVIDLGPEGGENGGLLLAVGTPEDIVKNKKSITAKYLKEKL
>NZ_CP017479.1|WP_035641081.1|2267538_2267835_+|hypothetical-protein
MKSHLINQEKLNLFTKIISKKINNGFVVVERNDKLPFTILYKEGRKINHGLNFFAFCATLGMWSLPWLYLTRVVAKDKKVMIAIDEDGNIFEENCYLG
>NZ_CP017479.1|WP_156101396.1|2266723_2267284_+|hypothetical-protein
MIKFKTLLLQLFLGCSFLVFSKSQTNGNANVGENQAESGVFYQKNDNSKGYPVDPFDDTLFLVYNRIGVFSAESRAQAITKRIEMLSKDPLFRKDSLRICKSDFGLEIVYNTDFVVMSVTDSDGKKMGNTNFELAQKNLAIIQKAVLFHKENNLVTNWIKSLGILFLVLMGVFVIVFSFQKRFKKL
>NZ_CP017479.1|WP_035641087.1|2265103_2266573_+|polysaccharide-biosynthesis-protein
MGIVLNQSFKNTIITYIGFGIGGISTLFLFPPILGKTFYGLSNYILSCANVIMPLFAIGMQNTLVKFYSQCKSEKERNEFLSFTVLFPILLIVLIILIGLCFYDEISFFVTKKNPIVKDFIWLIPVIGICMAYFEIFYAWARVHMYSVFGNFIKEVGLRLFSLIALFGIYFKWITAVDFIYLTAGIYLVAFLVTMFYAFRIKKPVFQFTIPHNVKSILEYTSYIILSGSVANLLLDGDKIMLNQYMKIENIAFYSVATYIALVISVPSRAMHQIVYPITAKLMHDNKHDELNDLYKKTSINLQIVGGFVMLCIFVNIDQLYEMMPAEYRGGIVVVFMIGLSKYFDLILGNNNAIIFNSKYYRAVLFLGVGLVILTVILNMIFIPLLGIIGSAIATLLSITCYSIAKLLFVVKRMHLYPFTKETLHSIAITFVVFLMFYFWKFPVNPIIGICLKSILVTIVYVIVNYKFVVSPEINQTLDKVLFKLKSSK
>NZ_CP017479.1|WP_035641089.1|2263770_2265063_+|glycosyltransferase-family-4-protein
MNTKKILIITYYWPPAGGPGVQRWLKFVKYLPDFDIQPIVYIPENPTYPIVDANLVEEVSDKAIILKNKIFEPYQLASVFSKNKTKKISSGIIPNKKKQTFLEKVLLWIRGNLFIPDARVYWVKPSVAYLEKYIKENNIDTIITSGPPHSLHLIGLVLKQKLKVTWFADFRDPWTTIGYHKSLRLSTRAERKHKSLEYRVLNTADQVIVTSKTTKTEFEEITNRPITVITNGYDMEPATKIALDSKFSLAHIGSFLSERNPAILWESLSELLNEIPDFKSHLELKLIGAVSQEVLDAISKFSLDSYLNNLGYVSHSEAVAHQRNSQVLLLIEINSEETKSIIPGKLFEYMVSNRPIIAIGPKNSDFSEIITETNTGVFFEYSEKEKLKNTILSYYNQFLEGKLQSYAVGLQKYSRRNLTKDLAHLINSKI
>NZ_CP017479.1|WP_035641108.1|2276707_2277355_-|phospholipase
MNLSLEYKIREPKVILDKNPLLLLLHGYGSNEADLFSFASELPGEYYIISARAPYDLQYGSYAWYAINFDADQNKFSDNNQARISRDVIADFIDELVANYPIDANDVNLIGFSQGSILSYSVALSYPEKVNKVVAMSGYLNLEIVTEDYLKNNLSKLKIFASHGTVDQVIPVDWARKTPGILEKLGVNTTYKEYPVGHGVAPQNFYDFKNWLVEN
>NZ_CP017479.1|WP_035641060.1|2277421_2277751_-|hypothetical-protein
MNNTVEAGKTAAITSYILGIGVFIAMSMNSGEDKNEFASFHIRQGLGLTITFFSLGLIISNFDSLMISAPMWIFVSILWAYGIFSAIKGETKPVPLLGEYFQKWLKSIS
>NZ_CP017479.1|WP_035641057.1|2277760_2279014_-|dihydroorotase
MKIIIRSAKIIDSKSPFHNQTVDLLIVDGLIKKIGTALPNTDNAEELKLDNLHISQGWFDSSISFGEPGFEDRETITNGLEVAAKSGFTAIALQPNSFPVIDNQSQVNFVKSKANGFATQLFPIGALTKGSEGKDMAELFDMKNSGAVAFGDYTKSLDNANLLKIALQYVQDFDGLVIAFAQDDKIKGNGVANEGIVSTRLGLKGIPDLAEELQIARNLFLLEYTGGKMHIPTVSSAKSVQLIKDAKAKGLNVTCSVSVHHLVLTDEKLETFDTRYKVTPPLKTESDRQALIKGVLDGTIDIITTDHNPIDIEHKKMEFDLAKNGTIGLESAFGALMTVLPLETIIEKFTAGNSIFSIPQQSINEGEIANITFFTPEGDSIFTKENILSKSKNSAFLGTALKGKAYGILNQGKLILG
>NZ_CP017479.1|WP_035641055.1|2279147_2281076_-|membrane-protein
MHFKQPEIIYFLFLLIVPILVHLFQLRRFKKEYFTNVRFLKILSIQTRKSSKIKKWLLLVCRMLLLACIILAFAQPFFESKDSKNASNEMYIVLDNSFSMQAKGKKGELLKRAIQELLEETPENANFSLLTNTESYWNTDIKTIRSELQNLKYSASPFQLDNSIAKIKAHKSAFKKDIIIITDAVGITQNQLKNIGTDNVPYFIIPKAEQKNNVSIDSVFIRQTLDDFYELSINTTNYSDDLKPIPVALYNQNKLIAKTIINYKNKKETTNFTIPKQAFHGYVSIEDNDLAYDNKLFFSISKIKKTNIISIGVPEKNNFLSRIFTNDEFNYSSFAINSLDYNSIDKQDAIILNELDEIPQALQTTLKTFVNKGGNLIVIPSETASISNLNALLNQFGSTQFQSLDSNEKLITKINFNHPLFSGVFESKTNNFQYPKTKKSFAVSTTSPAVLNFEDQSPFLIGIQNPVSSVYIFSAPINTLNSNFQQSPLIVPVFYKMALSRQNNGINSNTIGNSNSYLVSVLLSKDEILTVKNQDEQFIPVQKMLNNKVQLFFNDYPEKAGNYTIYDSQKPIENISFNYPRTESNLDQISENILSDYKTGDSISTIFDTLQTNRTDNQIWKWFIIFALLFLALEMAIIKFVK
>NZ_CP017479.1|WP_035641053.1|2281257_2282364_+|lactonase-family-protein
MKKIYLFLLLISSSVVIYAQKNKVNLLVGTYTNSCNSRGIYVYEFDTNNAQIRLKKSSDSIVSPSYLALSNDEKFIYAVNENGKQSTVSSLSFDAVSGKPSLLNSVSSKGDDPCYIINDDSNVIVANYSGGNISVFGKKEDGSLTDAKQVIQHYGKGVKVQQQKPHVHMVYFSPDKKYVLSNDLGTDKVYVYNYNPTAIADVLSLKDSVSVKAGSGPRHLTFSKNGKFVYLLQELDGSLTTFSYADGKLTKINETSILAKDYKGTFSSADIHISPNGKFLYASNRGDANNITIFKISGKGKLRSKGQVSTLGKGPRNFVIDPTGKFLLVAHQYTNDIVIFKINKKRGTLTDTKKRIDLCSPVCLVFAK
>NZ_CP017479.1|WP_035641050.1|2282496_2283846_-|DEAD/DEAH-box-helicase
MSTFEQFNLPKSVQKAIDDLGFTTPTPIQEKTFSVIMSGRDMMGIAQTGTGKTFAYLLPLLKLYKFTPGHTPKIVILVPTRELVVQVVEEVEKLTKYMSVRTIGIFGGVNINTQKTTVYQGCDILVGTPGRVMDLTLDNVIRFEEMQKLVIDEFDEMLNLGFRTQLTAILAMMPKKRQNILFSATMTDDVDTVLNDYFDYPEEVTLAPSGTPLENITQFTYQVPNFNTKINLLKHLLETDEDMSRVLVFVNNKKISDMVHERIEEDFEGQFGVIHSNKSQNYRLSTMAEFQEGNLRGLITTDIMARGLDISNITHVINFEMPELPELYMHRIGRTGRADATGTALSFVTPREEESKIAIEILMDMELNYEPFPEDVEVSIKLIGPEKDRQPFKLLIKPKKIEGDGAFHEKSKKNQKVNLGGPGVTKKKTHGSVNRNMLKNQAKKRKNKK
>NZ_CP017479.1|WP_051877926.1|2284209_2284632_-|response-regulator
MNNSDLKILIAEDDVLMIKILEFILKKEGYQVISCKDGLTAIEKIPTLIPDLIITDIMLPYRSGLEIIGFSKDNYENIPIIVVSALGEEEGTVIEAFNLGADDFVSKPFNPNELLLRVRRLFSKKNRFAKQNKIEEGVPA
>NZ_CP017479.1|WP_035641049.1|2284810_2286076_-|YaiO-family-outer-membrane-beta-barrel-protein
MIQRTVNKLSLILLILCFAQIYGQQKEFKGDPDVSFATARNMAFNNQRKQAQDTLQFILTKYPDYHDVRSFLATTYSWDGDYKKAKKEFDYILKKEETNKSAWLGTIQNELWASSPYIALDLSEKALKYYPNDSEILLLKASALEKTNNPTEADKTVLQVLSKEPNNQKAIEYKNALNKKLNLNNIGINLATDLYSSIYDPMYYSTIKYGRETKYGSITAKVNLNRRFEENGVQYEVDLYPKITKGLYGYLNAGFSNSSLFPESKYGAELFKSLPKGLEVSLGFRSLMYSTTTNIFTGSLTWYTGNNYWSLRSYVTPSDTGTSLSGALTYRLYRKDADNYFSAAIGAGYSPEINQFSNNGDQVAIFNLKSQKANIGYNFTTTNNKNVIGLQSGITHQEIVFDPGNYVMIYFLAVSWELRFK
>NZ_CP017479.1|WP_051877925.1|2286088_2288497_-|sulfatase-like-hydrolase/transferase
MNNFKPITFFNNTIKNSIDYIYSLFSLITVFCILSYVDIYKNFDLTVFSHKIGNDFVVGLQIGLLFLPLYLILKWIKQSLATVIIKILFSLIVIIQLAMTGYSLTTHINLGSDLLGYSLSDMYTTVTSSLSISFVMFLPFIIVPALYLGLIRVFQFIGTKINPIVPFLIVLAIGGFNFVFANNTEPVYQNKLHFLVSDIIRSKKEESLSAQRVFSFKKEYPLEKAAEDAKDVLSPFFNIHQEKPNIVFIIMEGLGRDFTDDGEYSGFTPYLDSLTTKSLYWKNFVSNAGRTFGALPALIGSAPFGKNGFMELNPLPKHNSLISILKSNGYTTSYYCGDDINFDKKSTFLEYNGINTITDVNKFGPGYTMSKKNSGGFSWGYPDAEIYRKTLSELNQKSQPRLDIIMTLSNHEPFEFPSKENYLKKVDAILNSKSYLERNKLKEYKDIFAALLYTDNSLQKFMAAYSKRPDYGNTIFIITGDHRLIPVPQKDNLSRFHVPFYIYSPMLKKTAEFKSISSHNDVTPTLVSFLTNNQKIKKLEKTYWMGQGIDTARQFRNVHTIPLMRYKGSLIDYIYKDYFYTDGNLYKIDSNFNITESNDGLQDTVKESFNKYKYLNTYLTSKDKITPVASKFKSTLYTFTPQEIAYIKKVSKGLNSDQIFFKARELAFNKEREKARLLCNYMLNDKPNYIDFKILKGRTLAWDGDYKNAEMELLASINQKPFYEDGYSALMDVYFWSDQNKKAVKIGKQAHSNKIYAPEISFKLAKSYQKIKNITEARKQIDSLLTVYPENQEYHKFKKSLK
>NZ_CP017479.1|WP_081907385.1|2288570_2289989_-|glycosyltransferase-family-2-protein
MKILLDIYEIFVGLFSITYILLYLTLAFLSYYGIKQYLNTKHFITNNVLVKSNHIPGVSVIAPAFNEGATVVYNIKSLLSLNYPKYEVVLINDGSTDDTLEKLIREFELVKVDFYYEAKIPTGPVRGHYKSTNPIYSKLLVVDKENRKSKADASNTGINSTKYPLILCTDVDCILKSDAIIKLAKPFIENKKRIIATGAGIRSSNSCEVKDGFLVKIHFPTGWYARFQELEYVRAFLMGRMALSQINSLLLVSGALGLFDKEIVIKAGGYWHKSLGEDMELVMRMRKYMYENKLPFAIKYIPESLCWTEVPGNKTILIRQRMRWARGLIQTLFLHKNLLFKPKYQRTAFFILPYFFIFEFMIPVIEVVGMIATILFLIFFEVNYLFFFYISVVVYFFYLIITITSIFLDDVIYKNYANARELMILILMAVIEPFVYHPVNLYASLKGYYHFIRQKEQNWGNMQRQGFSTKPE

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Crispr_ID: NZ_CP017479_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_7

3370577-3370678

Orphan

Consensus_repeat	Method
GGATCAAGAGCAAAAGTTGGGGATTAAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_7

>merge|NZ_CP017479|7|3370577-3370678|CRISPRCasFinder
GGATCAAGAGCAAAAGTTGGGGATTAAGCAAAAATATTGGATAATCTAAATAAGAAGAAATCAATTTTTCTGGGATCAGGAGCAAAAGTTGGGGATTAAGCA

>NZ_CP017479|7|7|3370577-3370678|CRISPRCasFinder
GGATCAAGAGCAAAAGTTGGGGATTAAGCA	AAAATATTGGATAATCTAAATAAGAAGAAATCAATTTTTCTG
GGATCAGGAGCAAAAGTTGGGGATTAAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035636526.1\|3381551_3381872_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|184771
NZ_CP017479.1\|WP_035636524.1\|3381941_3382403_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP017479.1\|WP_035636532.1\|3378237_3379278_-\|cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|107204
NZ_CP017479.1\|WP_035632907.1\|3371337_3372288_+\|NmrA/HSCARG-family-protein	unknown	unknown	gnl\|CDD\|187561
NZ_CP017479.1\|WP_035636538.1\|3374142_3376179_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|236873
NZ_CP017479.1\|WP_035632917.1\|3367554_3367848_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP017479.1\|WP_035636541.1\|3372921_3374010_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP017479.1\|WP_035632927.1\|3358562_3359825_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380191
NZ_CP017479.1\|WP_035632913.1\|3369050_3370328_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP017479.1\|WP_051877598.1\|3362009_3363668_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP017479.1\|WP_035632915.1\|3367940_3368954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035636534.1\|3377066_3378020_-\|LamG-domain-containing-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP017479.1\|WP_035632923.1\|3360369_3360942_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035636528.1\|3379351_3381412_-\|oligopeptidase-B	unknown	unknown	gnl\|CDD\|224684
NZ_CP017479.1\|WP_035632919.1\|3364883_3367250_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_070261866.1\|3367242_3367548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035632910.1\|3370762_3371227_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
NZ_CP017479.1\|WP_156101284.1\|3361147_3361609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035636535.1\|3376280_3376991_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP017479.1\|WP_035632920.1\|3364218_3364446_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035636526.1\|3381551_3381872_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|184771	PRK14623, PRK14623, YbaB/EbfC family nucleoid-associated protein.	1.71525e-50
NZ_CP017479.1\|WP_035636524.1\|3381941_3382403_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.0895e-07
NZ_CP017479.1\|WP_035636532.1\|3378237_3379278_-\|cysteine-synthase-family-protein	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	1.1227e-130
NZ_CP017479.1\|WP_035636538.1\|3374142_3376179_+\|PDZ-domain-containing-protein	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	4.27356e-69
NZ_CP017479.1\|WP_035636541.1\|3372921_3374010_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP017479.1\|WP_035632917.1\|3367554_3367848_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000400063
NZ_CP017479.1\|WP_035632913.1\|3369050_3370328_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.71169e-24
NZ_CP017479.1\|WP_051877598.1\|3362009_3363668_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	2.25432e-27
NZ_CP017479.1\|WP_035636534.1\|3377066_3378020_-\|LamG-domain-containing-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.56921e-18
NZ_CP017479.1\|WP_035636528.1\|3379351_3381412_-\|oligopeptidase-B	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
NZ_CP017479.1\|WP_035632907.1\|3371337_3372288_+\|NmrA/HSCARG-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.57344e-76
NZ_CP017479.1\|WP_035632910.1\|3370762_3371227_+\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	9.69662e-19
NZ_CP017479.1\|WP_035636535.1\|3376280_3376991_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	2.58366e-125
NZ_CP017479.1\|WP_035632920.1\|3364218_3364446_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00830857
NZ_CP017479.1\|WP_035632927.1\|3358562_3359825_+\|hypothetical-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	8.46154e-17

>NZ_CP017479.1|WP_035632913.1|3369050_3370328_-|tyrosine-type-recombinase/integrase
MKYTFKLKEPNSQKETLIYFTCFFKDEDKKFIYSTGEKIHPKNWDAQNKFPFLNGKNKAEFVESIKIQLNRYSDLMQKTETERKKINEPFTADTLKKVFDEEFKRTPKGKNVFFEAYDTFFNEKAGKLEWTAGTKTRYQNIKNILERFEIAKNYPLTFNRIDEKFHAEFTDYSLNTLKHVNNTYLRNVVFFKTFMNWAIDRKYTYNEKFKKFNKNESGKDIIKETATSQIALTIDDLNKIMNHTFKSKSLERVRDVFVFACVTGMRFGELSLISKSNVTDTHIVLKEEKGVFKEPRNIPLTTLSKYILTKYDYELPLIANQKQNQYLKKAFEEMEFSNKIEKTTNRGREIERSEDFIYNRITTHTARRTFITMMKRKGVSDKLIARATGHKDMATLNKYYQVDDEQTKEAMDDVFSIEIPLKKIN
>NZ_CP017479.1|WP_035632915.1|3367940_3368954_-|hypothetical-protein
MENNQPKTKDFELIDIDNRDENYSNEDIFYGLVWCLGGFNGGINFKDEKNFYDGEEVTVLQRIQCLCYIISYITDIDFLKQALSFLKMIGLIHEKDIDLEKYLISAYSQGFYSETDTVKIMAIFYSLTSRHNLNSKTLRFPKSEAPKALEIKIKNRVIEHNLTEVESSIRRNNLLQFEDVISKESIIEQKKSIDKWLRALLKFTLFKNTNFLDLEINYLEKISNHLIEPEKLNNDSDQTFSIMEWATIFYYADETESLSDGKTKKERMNSFLEDNNINTTVKSFKNKYHIATKRINNVNDYPIKKLKLIIPFMKSKYSKSITKIENDIDFLTNELSD
>NZ_CP017479.1|WP_035632917.1|3367554_3367848_-|helix-turn-helix-domain-containing-protein
MDFQEQSLFNTLLSKFEPIAKRWMKEVLIELTHETKPENIRHSVKVTAKRNSLSEGTIRNYIKRGIIDAEKIGRRILIDESQFEKGLSEVKSLKYKR
>NZ_CP017479.1|WP_070261866.1|3367242_3367548_-|hypothetical-protein
MEIITPHGLEINLSIQEDKNTKSKVQKKTIFHYLKVHSVTTSMVTDATAVSICRYKKDLVKQGLLFEVEKKICKLTGFKAWYLTTNSDLFPQFNHKKLGNG
>NZ_CP017479.1|WP_035632919.1|3364883_3367250_-|hypothetical-protein
MDKKIEKGSSDVMSAWQLEFTNRIQLESKSRKEQFTFRDACNRPSFHTKRDKTFLSAVDFLDSNPLRNNDYVKYVSYYNITGKKLNAKYFRNDLIKLENYYIKVDEAKAKGETYCPFSVKAYERYVLYMVLKFNGEYTSDLDEAFGVNIVGHREYNPLTNIPSVLRGELPFEIKEYDIYRAFYTFLCLELRIEPDSDIYAIISKKTLAYLLNANHTGTESRESILKKLKPIFGENAEKVCTLERFNEKGKLFNDLIKYEKEYIERCAIENKLVDYVRLHDAIVVRKDAVFHNTEFDIVKFSIKECVKPAIENEIKKFYTIDQNGKVYTSPSLYANFFIQEKFLRISTPDDIPLLLRDTNNVVIFFHHNTNTVSFLKENINEFGVLYDTVADTIARDFLYKIKQGFLLIPPVELIYYQDTKNSFGLPFKNGFFYFDSFLDIEPKRKNYTEVKGFFSPHDIQSREFQYTNEVGMFEHFVTRVAIGQKEAVIQDQKNIVESFCTMIGFMCHNYKNMTKNPCPVLSDMFADDEARNGRRGKTLLLKGIQEVQMALIKGGKEFDSGYTFVFNDLDKKHNVYIIDDVPPGFKYDDLYTAISGDISAQKKGLKAESIKFKDTPKFAVTTNWIVSYDEKNASTNWRFIEYKFTNYYNIDHTPNIEFNCTFFEEWDSEEWNRFYSFVFRCVRLYLQKGIIKTDYNKTNDNYKAKFSSDAILEEFERIMSILIENDSFKVSDFLKLYNDPSNSMRHEKIFTIKNTKKFIDVWMDKFNSERHEFGFEYIQRSRNWIKKQ
>NZ_CP017479.1|WP_035632920.1|3364218_3364446_-|helix-turn-helix-transcriptional-regulator
MKKETIQEAIGKFIYNERKKQKLSLTALSIKVYKNKCSATRIGNIEKGKTKNYSINTVFEIFYALNYDLREIFKE
>NZ_CP017479.1|WP_051877598.1|3362009_3363668_+|DUF262-domain-containing-protein
MEIESQIEYKTAENIKSLFEASENIRIPAYQRAYSWESKQCSQFLEDLLEQKSKRYYLGNFLFEKDGETLFIIDGQQRLTTTILFLSAIAKNQEKHGINIDGIKETYLTDIFRTIEDDQIIFKKVSQKHLVSAIDDTETISQKRIIDAFNFFETELTKLDSDSLYLVQQTLENAVISTFYITNKIEAIQVFEYQNNRGKELSRFEVIKAYLMHQIHIHSTNDVQANNDIADIQREISQTYRHIEAVESYFTESELLDNYCNLFFNMNGNIEAIKDKLNQEGNKIKWIKSFFENFVELTHSAKSIVSNKNISEITNLFFVGNEANWKLVLLTLFNKGEVSGDTFKRILKLLEILCFKLKLGDYRTDYLPHYANRYFNPTDIYNLDSLYQDIKNVTETGFKWYWNDGDRFKNIIINYFDNEKWHYDRNTIRFVLWQYENHLRQINRSGALLDKELYNKYTIEHIKPQNPTDEVYSEDFKKNFLQLAGNLALLTQSQNSKFGNKSFEKKSELFQDTALSSYTEIREKTVWTEIEIADRHQRISDFAKKYFDTTNL
>NZ_CP017479.1|WP_156101284.1|3361147_3361609_+|hypothetical-protein
MKVPLAEALLDPFFYYNLKINSIPSVEHLPGSKITGLLNSPKNQIEILIDGKKIKKLYIKDLQQELLLFPLYNIHKTEIIKDCSPGIYVEQKAIGFISSYEIKLDSFDIEHLQFNLLQFNDKLLLQQPSYQNKNFRFRKKETLLIYQNSFEVL
>NZ_CP017479.1|WP_035632923.1|3360369_3360942_+|hypothetical-protein
MKIDKELEIDFIRAIQKSNSERTYREGGRIHKRCKNIESQFRFTPKVNEKIVLLNEKLKQEEKRVFYQYRLIEKQSNLMVVNKEIDDFNITVVLSYWNEKHYKKYEPSIEGNPFFETVNNFMDMQRGEIEYNQEPHNEHHDKAPFPEINHCYSFHNLYDHCHELTWFDIYNIDEVWMEIKVDYQFFRKIK
>NZ_CP017479.1|WP_035632927.1|3358562_3359825_+|hypothetical-protein
MEEGYFISNNKKIILAPNLEKLDLSIDQSNIITAIKCNSNLKKLKLSNGHLNQLSNIDIELNENLKSLSLLRIDIQSLNLNEKLEELECYIIEGSTLKLNENIKKFNCISCHFSKLELNENLEELKINNTKISGLKLNKNLKKLNCSDTNLRKLELNEKLEELECDFTKISSLKLNTNLKKLKCHDSKLRKLELNENLEELDCSHNMISSLKLNNNLKKLNCEINKIKELELNENLEELNCFDNNISNLRLNNNLKKLDCGFNKIRDLDMNENLKELDCSVNAISNLKLSKNLKRLHCGVNNLRELELNENLEELNCFDNNISSLKLNKNLKKLICFGNNLSKMELTENLKILDVAFNDLKTITLNEKLEELNVSDNKIEKIVINKKLKLLKISNRKNKNIQFDNSVNNTEVQIEYSILG
>NZ_CP017479.1|WP_035632910.1|3370762_3371227_+|DUF962-domain-containing-protein
MKTLNQWFDEYAVSHQNPQNKAIHYICVPAIFFSIVGLLMSIPSGFLNNLLGFNQPIIENWAAVILIFVLLFYLRLSVAMAAKITVFSILCLTINYYIGQLLTLWFFSLSVFVIAWIGQFYGHKIEGKKPSFLKDIQFLLIGPAWVVHNIFSKK
>NZ_CP017479.1|WP_035632907.1|3371337_3372288_+|NmrA/HSCARG-family-protein
MENKKIITVFGATGAQGGGLARAILTDKNSEFTVRVVTRDANSDKSKAFLQLGAEVVEANIDDIKSIKNAITGAYGAYFVTFFWDHFSVDKELQEVNNFIEAARESHLKHIIWSTLEDTRNWMRLDDDRMPTLHGKYKVPHFDGKGEADHYFREAELPTTFLRTSFYWDNFIHFGMGPQKGEDGNYYIAFPMDDKKLPAIAAEDIGKCAYGVFKKGNELIGKTVGIAGEKLSGDEMAEKLSKALNKKVLFNRVTPEAYRNFGFPGADDLGNMFQFKRDFNDDFNNARNEIFAKELNPELQNFDMWLSANASRIPIE
>NZ_CP017479.1|WP_035636541.1|3372921_3374010_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MKNTALTHLHEGLGAKMLPFAGYNMPITYEGVNAEHETVRNAVGVFDVSHMGEFFLSGPNALALIQKITSNDASTLTIGRAQYSCLPNNEGGIVDDLIIYKMKEEEYLLVVNASNIEKDWNWISAHNDLGVEMKNLSDDYSLLAIQGPKAVEAMQSLSSIDLSAIAYYHFEVADFAGFPNVIISATGYTGSGGFEIYCKNSDAEAIWNKVFEAGASFGIKPIGLAARDTLRLEMGFCLYGNDINDTTSPLEAGLGWITKFNKEFTNSTSLKKQKEEGVSKKLVAFEMQERAVPRHDYEIVDGSGAVIGIVTSGTMSPSMNKGIGLGYVTTANSTIDSDIYIRIRKNDVPAKVVKLPFYKKSF
>NZ_CP017479.1|WP_035636538.1|3374142_3376179_+|PDZ-domain-containing-protein
MKKITLVFLFSALPLFAQNSDASCDVLLKINNLLQREHFSPKPINDSLSVYLFDELMNKLDPSRIIFLKSQVDTLSKKYRLNLDDLILRKNCFFITDIKSEYRKSLLRNKSIFEKLNHETINFKIKDTIRFKQNDTEFTLKENNVEKAMNKKVRFEILSEIAERSKNLDSLKLNFDSMSLESKKNIINNELCKINFLLSDEKSFEDNIFNIFCGYFDPHTNYFSNDTKSSFVSTLSKEKLSLGLDVSLNEKNEIIVEEIDPNGPAFKTGKIKKGDQIIAVSNQKETLEVSCSSLESIAILMSSELNTNITLTIKRNSGKSFNVSIEKQVLKDEENTVYSFIVDKEIKVGYIKIPSFYSNFEDGNNKGCAQDVAKETIKLMKDNIKGLVLDLTDNGGGSMEEAVKLAGLFIDSGPISIVADNKRQLSVINDPYRGVIYKGPIVIIINGNSASASEFCASIMQDYNRALLIGSTSLGKATMQTIVPLEKDDEEHFVKLTISKFYRITGKSHQSTGVIPDVQIPTIYQDVNQKESDFPTALKNESLNTQIRFTPYVSNEFIESLAQKSRERVAQSPFFNSIIALNTKIDTILKKSKFEIPMTLDDVFANQTKINDLSEEINNFKEDDLNLNVSNSEYNKTLLTMFPSLIEYNKIQLDNLKSNHYLNEAISIIADYKVLKQK
>NZ_CP017479.1|WP_035636535.1|3376280_3376991_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAFEFRKGRKMKRWSAMAKAFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMPKENVERAIKKATEKDTANYKEVLFEGYAPHGIALLIETATDNNNRTVANVRSYFNKCNGTMGTQGSVEFMFDHTCNFRIPKGGIDPEELELELIDFGAEEVFEDEDGILIYAPFGSFGTIQKELESRKIEILSSGFERIPQITKKLSEAEVADVEKLIEKLEEDDDVMNVYHTMEE
>NZ_CP017479.1|WP_035636534.1|3377066_3378020_-|LamG-domain-containing-protein
MKKIFLSTLLFAFLISANAQTPIQEFNFNGSLNNVKKDVAFSGTVYYVKDRAGVANGAIHVCSTVLETTIPNLPVSNAARTVSVWVKYKDVTKANYIWGYGNTLNAQYFGLLQQSTTNSKSDLNLAGWGPTNDVIVTTAIASDVWYNYIVTYDGLVSKIYKNGELIKSSLGPKKNTFSSAFWMGKIGSNVSIDADIDDLKIFDIALTTDEVARLYANSLMQNSNYDSIAVANATEKKVVLTTTAKTTKTGIEKSDVVLSVPEETLPVKTSEIYSEKGLKVYRTDKNKIDISNLPEGTYMLKVTNSQNGSMNQKLTAN
>NZ_CP017479.1|WP_035636532.1|3378237_3379278_-|cysteine-synthase-family-protein
MKEEINAYNNVLELIGNTPLIKLNNITENLKGNFYAKVESFNPGHSSKDRIALYIIEEAEKKGILSPGDTIIETTSGNTGFSLAMVSIIKGYNCILAVSSKSSKDKIDMLRSLGAKVYVCPAHVSADDDRSYYNVAKRLHEETKGSVYINQYFNQLNIDAHYMSTGPEIWKQTSGKITHLVACSGTGGTISGTAKYLKEQNPNVKILGVDAFGSVLKKYHETKEFDTDEIYPYRIEGLGKNLIPSATDFDIIDKFMKVSDEESAHSAREVTRKEGLFVGYTSGAVMQAIKQYAEEGEFDENSNVVAIFPDHGSRYMSKVFSDDWMNDQGFFDSINEEEAQKIEFIK
>NZ_CP017479.1|WP_035636528.1|3379351_3381412_-|oligopeptidase-B
MPEKNTAPVAKIIPKKLKKFGEVRIDNYFWLNDRENPEVIDYLNQENTYYQEKTAHTKDFQIALFEEMKARIKEDDQSVPYLYNGYYYITRYEKGQDYPIYSRKKESLSAPEEILFDCNEMAKGKPYFQLGALSVSPDNKLALFSYDIVGRRIYTIQIKNLETKEVLEDKIENVTGSAVWANDNKTIFYSDQDDVTLRSHKIFKHKLGSKQTDDVLVYFEEDETFNVEIAKSKSQKYLAIESDSTLTTEYQILDADNPDGEFKIFQKRVRGMEYSISHYGDSFYIITNKDKAENFKLMKTPVNATSKSNWTEVIAHRKDVLLEDVEIFKDFLVVEERENGLNKIRIMPWSGEGEYYLPFESETYTAYTTSNVDFDTEILRFAYQSMRTPSSVVDFNMRTKTKEVKKEQEVLGGKFDKDNYIEERVWATADDGVKIPISMVYKKGLKKNGKNPLLQYAYGSYGHSMDATFSTTRLTLLDRGFIFAIAHIRGGEDLGRQWYEDGKLLKKKNTFTDFIDCSKFLISEKYTSAQHLYAEGGSAGGLLMGVVVNTAPELYNGVIAQVAFVDVITTMLDDSIPLTTGEYDEWGNPNVRKYYDYMLSYSPYDNVVAQKYPNMYVSTGLHDSQVQYWEPAKWVAKLRALKTDDNLLFLDTNMDAGHGGASGRFEAVKELAKEYSFLLDLEKIKI
>NZ_CP017479.1|WP_035636526.1|3381551_3381872_+|YbaB/EbfC-family-nucleoid-associated-protein
MDLMGMMGKLRETQQKIEDTKKRLDTVLVDEQSNDNLLKVTLTANSKIKSIAIDDSLLEDKEQLEDYLILVLNKAIEKASKINQAELDAVAKMDMPMIPGMDNLFK
>NZ_CP017479.1|WP_035636524.1|3381941_3382403_+|GNAT-family-N-acetyltransferase
MNQLVLTFKKATEEDIEFLLWLRKETMVEHYINAGREVNEENLLSRINYHFEHAKIILLENEKIGLLKVAEQDNEIEVFQIQIAPSHQNKGIGTQIIQSILKEASKKKIPVKLNVLKVNKAQTLYQNLGFEIYDENEFSYFMRKIEKIEKSKS

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Crispr_ID: NZ_CP017479_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_8

3740358-3740499

Orphan

Consensus_repeat	Method
TTTCTCGCAAAGCCGCAGAGGCGCAAAGTTTAGAACCGATTTCTTTGCGTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_8

>merge|NZ_CP017479|8|3740358-3740499|CRISPRCasFinder
TTTCTCGCAAAGCCGCAGAGGCGCAAAGTTTAGAACCGATTTCTTTGCGTCTTCGCGAGAGCTCAATGTCATTGCGCTAAGATTTGTCTTTTCTCGCAAAGTCGCAGAGGCGCAAAGTTTAGAACCGATTTCTTTGCGTCTT

>NZ_CP017479|8|8|3740358-3740499|CRISPRCasFinder
TTTCTCGCAAAGCCGCAGAGGCGCAAAGTTTAGAACCGATTTCTTTGCGTCTT	CGCGAGAGCTCAATGTCATTGCGCTAAGATTTGTCT
TTTCTCGCAAAGTCGCAGAGGCGCAAAGTTTAGAACCGATTTCTTTGCGTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035634925.1\|3721009_3723310_-\|beta-glucosidase-BglX	unknown	unknown	gnl\|CDD\|185053
NZ_CP017479.1\|WP_035634902.1\|3741911_3742442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035634909.1\|3738273_3740157_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP017479.1\|WP_035634894.1\|3743953_3744553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_051877664.1\|3745979_3746912_+\|NmrA/HSCARG-family-protein	unknown	unknown	gnl\|CDD\|187561
NZ_CP017479.1\|WP_156101308.1\|3743245_3743803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035634916.1\|3727325_3730310_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP017479.1\|WP_035634898.1\|3742858_3743083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_081907231.1\|3742662_3742854_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_156101309.1\|3725826_3727275_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NZ_CP017479.1\|WP_035634910.1\|3736888_3737959_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213362
NZ_CP017479.1\|WP_035635017.1\|3748232_3748583_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP017479.1\|WP_035634913.1\|3733395_3734592_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP017479.1\|WP_035634892.1\|3744754_3745309_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334719
NZ_CP017479.1\|WP_035634921.1\|3724968_3725799_-\|LamG-domain-containing-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP017479.1\|WP_035634887.1\|3747347_3748139_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224996
NZ_CP017479.1\|WP_035635023.1\|3734677_3736771_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP017479.1\|WP_035634889.1\|3745562_3745913_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP017479.1\|WP_035634923.1\|3723539_3724904_-\|periplasmic-beta-glucosidase	unknown	unknown	gnl\|CDD\|370812
NZ_CP017479.1\|WP_035634915.1\|3730550_3733295_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|197715

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035634925.1\|3721009_3723310_-\|beta-glucosidase-BglX	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	0
NZ_CP017479.1\|WP_035634909.1\|3738273_3740157_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP017479.1\|WP_051877664.1\|3745979_3746912_+\|NmrA/HSCARG-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.1898e-64
NZ_CP017479.1\|WP_035634916.1\|3727325_3730310_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP017479.1\|WP_156101309.1\|3725826_3727275_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	2.40771e-42
NZ_CP017479.1\|WP_035634910.1\|3736888_3737959_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.02285e-113
NZ_CP017479.1\|WP_035635017.1\|3748232_3748583_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.00062e-28
NZ_CP017479.1\|WP_035634913.1\|3733395_3734592_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP017479.1\|WP_035634892.1\|3744754_3745309_+\|hypothetical-protein	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	6.33501e-16
NZ_CP017479.1\|WP_035634921.1\|3724968_3725799_-\|LamG-domain-containing-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	3.98825e-16
NZ_CP017479.1\|WP_035634887.1\|3747347_3748139_-\|hypothetical-protein	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	1.23711e-36
NZ_CP017479.1\|WP_035635023.1\|3734677_3736771_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP017479.1\|WP_035634889.1\|3745562_3745913_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.1945e-28
NZ_CP017479.1\|WP_035634923.1\|3723539_3724904_-\|periplasmic-beta-glucosidase	gnl\|CDD\|370812	pfam10091, Glycoamylase, Putative glucoamylase. The structure of UniProt:Q5LIB7 has an alpha/alpha toroid fold and is similar structurally to a number of glucoamylases. Most of these structural homologs are glucoamylases, involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity.	3.28899e-92
NZ_CP017479.1\|WP_035634915.1\|3730550_3733295_-\|histidine-kinase	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.000132383

>NZ_CP017479.1|WP_035634909.1|3738273_3740157_-|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVSVMEGNEAVVIPNAEGKRTTPSIIAFVEGGEIKVGDPAKRQAVTNPTKTIASVKRFMGHTFAEITEEAKRVPYSVVKGDNNTPRVDIDGRLYTPQELSAMTLQKMKKTAEDYLGQTVTEAVITVPAYFNDAQRQATKEAGEIAGLKVMRIINEPTAAALAYGLDKKGKDQKIAVYDLGGGTFDISVLELGDGVFEVLSTDGDTHLGGDDFDHEIIDWLADEFKAEEGIDLRLDPMSLQRIKEAAEKAKIELSSGAETEINLPYVTATASGPKHLVKKLSRAKFEQLTDSLVKRSMAPVAKALKNAGLSVSDIDEVILVGGSTRIPKIVDEVEKFFGKKASKGVNPDEVVAIGAAIQGGVLSGDVKDVLLLDVTPLSLGIETMGGVMTILIEANTTIPTKKSQVFSTASDSQPSVELHVLQGARAMAVDNKTIGRFHLDGIPPAPRGVPQIEVAFDIDANGIIKVTATDKGTGKSHDIRIEASSGLTSEEIERMKQDAEANAESDKIARERAEKLNEADGMIFQTESQLKELGDKLSDDNKVAIEYALTELRMAHQSQDIPAIQTALDNINAAWKKATEAMYAQGEQGQAAAEPQAQAQGDNVEDVEFEEVK
>NZ_CP017479.1|WP_035634910.1|3736888_3737959_-|magnesium/cobalt-transporter-CorA
MRKIRNIKTKQLQPYNLEYTGLHTDKKVEIQLFVYDDCSVAEYENDIISDLRKHIDLNKTNWLNIHGLNNIALLKVVTKYFNIDNFILSDILNTNKRTKLMEEKETLFFNIKSLLPQESSDDIRVEQISFLLKKGILISFQEKRSDFFTHIRERIRTNSGIVRTKKADYLLYILLDTVIGNFYITLENEEDKIEELIDFTKSSADPIILEKIEKHRDNFNLLKRSIIPLRDSLYDIKSMKDDDVFDEIEHDNYSFFTRLYQKCLELLEQIESDMGLLESASNFFFAAQAHKMNEIMKTLTVISVIFIPLTFIVGVYGMNFDNMPELKYHNGYFLVVCFMFMVVIAMVVYFKKRRWF
>NZ_CP017479.1|WP_035635023.1|3734677_3736771_-|phosphate-acetyltransferase
MKKAIYIATIEENCGKTIITLGLLRMLLGRTAKVGYFRPVIEDYEDGKKDTHIDMVISYFDLDIKYEDAYAINKSKLIKKKNNGKLGEVVDLIIEKYKKLEERFDFILVEGTSFTGEGTVIELDMNVLIAKNLGVPTIVVGSGEGKTLEELIDNLNLAYNSFKLKEVEVLAVIANKVQPQNLELVTTSLQNSLPSSVLVNSIPLIGSLNNPTIQEIIEVLDAKVLFGQEYLNNQVANYSIGAMQLRNYLLHLKENALVIVPGDRADIILGALQANESANYPTVSGIVLTGNIIPEESILKLIEGLSAVVPIITVERGTYHIANEIGNIKPKIYAKNVQKIETSINTFDKYVDLDALIDKFNAFEAEGMTPKMFQYNMVKRAKAHRKHIVLPEGSDERIIIAASRLLAMDVVDITIIGNKKQIESKVAELGLDFDFNKVPIIDPAESENFEDYANTYYELRKAKNVTPAMARDVMADVSYFGTMMVYKGHADGMVSGAAHTTQHTILPALQFIKTKPNSSVVSSVFFMCLEDRVSVFGDCAINPNPTAEQLAEIAISSADSSISFGIEPKIAMLSYSSGTSGKGDEVEKVRTATEIVKQKRPDLKIEGPIQYDAAVDLEVGQSKMPNSEVAGRASVLIFPDLNTGNNTYKAVQRETGALAIGPMLQGLNKPVNDLSRGCTIDDIINTVVITAIQAQEF
>NZ_CP017479.1|WP_035634913.1|3733395_3734592_-|acetate-kinase
MKIIIINSGSSSIKYQLIDMPSNEVICNGMIDRIGLESSNFTYATNSVKVEETLPIANHKVGLQKISQLLMDGTVGVIKSTSDIDAVGHRVVHGGSTFSDTTLITAEVKEKIRQLCDLAPLHNPANLEGINVAEEIFTSAKQIAVFDTAFHQTMPVEAYKYAIPNYLLTEHKIRAYGFHGTSHKYVSTKAIEYLKAANKPHKNIISIHLGNGCSITAVKDGKCIETSMGFTPVSGLVMGTRSGDIDPSVIFHLIKTLNYSADEVNALLQKQSGMLGLTGFSDLRDIQANAADGNKDCQLALAMNTYRIKKYIGSYTSALNGLDAIIFTAGIGENSAEIRELVCTEMDYFGLQLDKEKNQIRSKEIREINTADAKTKILVIPTNEELEIANQVYDLLLN
>NZ_CP017479.1|WP_035634915.1|3730550_3733295_-|histidine-kinase
MKAKLLYIFFLGFISLQLYAQELLPFVENYSKSNYQGDNQIWNVVQGNDDAMYFANNYYLLRYDGVKWGKYTLPNKTVIRSILVDGDRIYSGSYQEFGYWYRKNAKMHYVSITKGKKVFDTNNNDEIWKIFKFNGKIYFQSFNSIFVFDGKVITEKKLPFLISYCFVVDNQLLIATVKNGIYQWTDSGIEKEEGLSLLENKVVHSIQKHQNKIYFFTQKNGVFVFENNKLSVWENKLNELLKLANINVAQFIKNNQLIIGTANKGAYILDLNDGSYKNINRNNVLMNNSVLSIGQDKNNDLWLGLDNGIAHIEVNSPISIFFDSSGILGSVYSVASIPNGYLMATNHGIFKFVDKELSLIPNTQGQAWNISKIKDQYIIGHNEGTYVYKNGLLSKLSDINGGWNLTKSSIDNSYLQATYSGIVIYDDFNDLNKIKIIGGIQKPIKYLAQNRKNEIWAADNNRGLYRILYNDAHQTIKVDNVTNRCKIVNDFGVKIFEFRNEILFLINNFWYTYNSMTNQLELNQLFNTNFKNVSDVVSIDDNHFIVLQDGFLYYINVVGNKFIKNSIQEKYYKGKIINGNLKVFKDRNNYLLNLDDGFISLEFKNEIKKQPIVKIEAFNNGHLVENNSKINLNSELKIDVISGIYGTEKPDLFYTINGIKEYLPIKEGVILLNNLNSGSYEVTIYSNDGLSYNKTTNFQFVVDKAWYFSVWMIVIYMIFIGLVLYLYYMWNKMKYIQKLELEKEELKHQKEIFEMELKAENELSSQEYEKHILQLELQSKSLEIAGKSLSIAKQSEMIENIQNILDTESDLNKLKSEIKKTIKINAVNKHEWEVFESNLSLMNNEFIIALSKKYPNLTPKDIKLCVYLKMNLSSKEIAPMMNISFRGVELHRYRLRKKLGLAQEESLSMFLLSV
>NZ_CP017479.1|WP_035634916.1|3727325_3730310_-|TonB-dependent-receptor
MRNFIVGFLALILLPAYMSGQVITGKVLDQTGLGIPGAFVVAGNVSAETDIDGNFSIAAKEGQILKISLVGFEAVSIPATAKPMTITMKESQDTALKEVVVIGYGTAKKKDLTGSSVKVSGKDVADKPNTNPVASIQGKVSGLSVVDSGKPGEKLDVRIRGTASRYQTQPLYVVDGLWTDNIDFINPNDIESMDILKDASSLAIFGARGANGVIIVTTKKAKEGKTTINFSTSLGIKHITNEPSLTDASNFKKLYDEQRINQGLPPYGYYNLYNANTDWIHAIENKGATIITHNISVTNGTEHNKLYVGAGYTEDEGLIKNEDYKRFTFNVNDELEISDAIKVGVNLGGSNSKLPQLHDFIRTLQATPIVEPYNQKQGMYNQLPSEIGGAQVGNPLLDVDGVANGTSLAEEFRFVGSVFTEIKFLEDFKFRASFSADLGNKDERKYSPVYNVWDNESNQATLYRSLALTDVWQYKTDDKKMQEDYLLTYTKSLGNHNITLLGGYNRNYQYYSQLSGNVKQYPNGTPIPHDPRFWYVNTFPYGDPTTKFAYSDQWDRASASYFTRLLYNYDGRYIVNASFRRDGSSDLREWQNFWTVGAAWDISKEKFMEEQKFFNNLKLKGSYGTLGNQYTSIHYPTYPNYKNGQSAVFGESLVPAYVLAYRNNPDLRWETVTSYEGGIEATMLDSRLKIEAAYYNKTTDDLLTFVDLGSEQFYTNSGKIENKGVEFSASWNDEINENWSYSLSGNFSTIDNVVKSVYIDGFQVFDGPSIMTAGAPMGSFYGYTVEGLYQSYADVLASPPSTLGAYGPGDFKYKDRNGDGKITPDDRSVIGNPTPDVSYGFSASLNYKNFSFSIDFAGVYGNEVYRNWGNGSTFAQFNYRTDRLDHWTAAGTSNWEPRINDGSSYNQLASTYMIEDGSYLRLRNVQFGYTFDTELLNKASIQSLRLYLNAQNPYTWTKASGFTPDIGGTPTQFGVDNGGYPVARVISLGLNVTF
>NZ_CP017479.1|WP_156101309.1|3725826_3727275_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MVALLMLPLFNSCDDQEFLDRKPLGTAAEGDLAAGGFEEKAFGLYGLVRTSPGVTDWCRFFFESVRSDDAITGSNASDTANFDPYFEKYQYTTTHFMNTDCWNGHYKVIYACNDLIDAVDKSGATDEGSLTNKAEAMVMRAFLYFDLRRDYGEVPIVLNKVVVPGDAVKPKSTIAQVDAQIISDLTFASQHLPLSWPAYPGRATKGFANTLLAKLYLYQGDWTKSLAKSQEVIASGQYSLFSSYADLFKEGGDNSPEAVFEIQFLRQGGINYSSNYWEAQGVRGAGTWDLGFGMNVPNDNLINAYEANDPRRLATVLYSGQDDGNGLILPAKPPLDQPYWNKKAYSTPSVRQNYGENKNHWINIKILRYADVLLMAAEASNESGNTSAAASYLEMVRARARGNNAGILPPVTGSQSTLRTAIKRERRIEFAMEGERFYDLVRWGDAVSVLGPLGYQPKNAYYPIPQTAIDQSGGVLVQNPNY
>NZ_CP017479.1|WP_035634921.1|3724968_3725799_-|LamG-domain-containing-protein
MKINISMIKKAFGIVIVLMATIGCQDMERPELGDYPVDENPPGGPLKFYVPFEDNTTDPLRFAVDNIRAKFPSDNPLAQTQGINGKGVQGGPAKKFIAYSSANDFASTAGSFTVSFWAKHNIPTQTEFVFALTSDNWAKASMFVMAEGTPAKPILKLYVDEQPTTGGSDKWFEWLDAKMVPGIFDNQWHHYAFVYDGKISKMVLYRDNVPLEPLSQWTGHGNVKFNTAKVGSLRIGGSGNPEEGWMNSWTGALDQFRLYSSALTATEVGALYTGNE
>NZ_CP017479.1|WP_035634923.1|3723539_3724904_-|periplasmic-beta-glucosidase
MRKLKFLIAPVFLFLLSCNNNTKEKKTNVESPKLTDEQAMDLVQKDAIKYFWDYAESNSKLGRERYLTDDPNFEANKIAVGGSGFGLMSLIVGVERGFIPRDEAVKRMITGMNFLEKADRFHGAWAHWIDGTTGKAIFFGNVKDNGGDIVETAYLCQGLVAVREYFKNGNAQEKELADKADKLWKGVEWNWYTNGENAMYWHWSPTYHWEMKFKLEGYNECLIAYIMGAASPTHPIPAVAYHEGWARSGAITTDKKQYGIPLVLKYNTVGEIAGPLFWGQYSYLGLDPTKLSDKYANYWELTQNQAKITYEYCVDNPKKWKGYSDKCWGLTASYTRNKDGSTGYSAHDTGNDLGVITPTAALSSFPYTPKESMRFLHFLYDENKSTYVGVAGPYDAFSPHYNWVTPRYLAIDQGTIAPMIENYRTGLLWKLFMNAPEVQQGLKNLGFSSGKYGF
>NZ_CP017479.1|WP_035634925.1|3721009_3723310_-|beta-glucosidase-BglX
MKKIAVILLLGFVFFGYSQKKENKKQVTIKPKAEFVAELLSKMTLEEKLGQLNLPTSGDITTGQANSSDVAKKIEEGKVGGLFNIKTVQKIRDVQRIAVEKSRMKIPLIFGMDVIHGYETTFPIPLGLSCTWDMKLIERSAQIAAQEASADGICWTFSPMVDISRDPRWGRVSEGSGEDPYLGSKIAAAMVKGYEQDDLSKNNSILSCVKHFALYGAPEAGRDYNTVDMSHIRMYNEYFPPYKAAIDAGSGSVMASFNEVDGVPATGNKWLLTDVLRKQWGFKGFVVTDFTGIPEMIDHGMGDLQTVSALALNAGVDMDMVGEGLLTTLKKSLEENKVTIEQIDKAVTLMLNAKYDLGLFHDPYKYCDDKRAKTDIFTAASRDEARKIASQSLVLLKNQNQVLPLKKSGTIALIGPLADAKENMPGTWSVATKMENAISLLAGIKEVAGKSTKVLYAKGSNLDYDETFETNATMFGKTLHRDNRSKEELLNEALKVANQADVIVAALGESAEMSGESSSRTNLEIPQAQKDLLNALLKTGKPVVLVLFDGRPLVIKEENETVPAILNVWFAGTEAGYAIADVLFGDVNPSGKLTATFPRSLGQVPIYYASKNTGRPLVNKEGKFEKFRSNYIDERNEPLFPFGFGLSYTNFSYSNLKISSDKMNFGGKVTVSVDVANTGNYDGKEVVQMYIRDVVGSVTRPVRELKGFQKIALKKGEKQTVTFEISVEDLKFYNSDLKFEAEPGLFEVFVGGNSDAQNKVSFNLVK
>NZ_CP017479.1|WP_035634902.1|3741911_3742442_+|hypothetical-protein
MNKIKITITSLLISFIMQAQEKSEAENFIIDFFKKREKDKVTYYTDKIWPFNLEGIKDALKKTTLQIRDTRFAKDIDEMPISIVFTNKEMDYVYNEIEKNNKEGWAKGKLKDVEFIASENRDKYGTAIYSFSKPVFLRNNTICIFYYDGNEMGTLRTFMKINSEWKYYSMFFQWVN
>NZ_CP017479.1|WP_081907231.1|3742662_3742854_+|hypothetical-protein
MYNNAPKGDSVAMIHLFGIKYATEIKESEYSKKDIITQSGISASYLTELTKGVKLAEYVIPKD
>NZ_CP017479.1|WP_035634898.1|3742858_3743083_+|hypothetical-protein
MDKTYIRSKHFTYDELQTIIKQLKELNYEWIANIDYIGSSDSEEIDVTFSLLKEDLGEFLSVIFSCGYLHAFER
>NZ_CP017479.1|WP_156101308.1|3743245_3743803_+|hypothetical-protein
MKKLIKFFSISIFIFCILPCFQMCSDNSILKRQYENEVIVDSTLSVKTLKFKNDSLKKLTQEKREQELERVRRQWTANAYELGFSGFREFKIEDFKDWTLYPMLCFTVFILLSIFVFFFAFKEHLAKVYKISIFNLGLIISSMLIFISKVGFDIIYNIKYGYYLLLLNIIILIILSKRELERNSR
>NZ_CP017479.1|WP_035634894.1|3743953_3744553_+|hypothetical-protein
MTKTEVIKKLYFHLEETLSEEALKIILENDIRVENFFVIHSGIYFDKLKSENKILDYSLQHTIKIGEKERVHIDLRFVDNQGEINYVELKHFSISRNRGNGRRLSFYTSNSESGRKVGIVGDCLKLHLLKNQEFLEENSNLFCVAFITPKPNLIDLQKMILNLESYPEIENWELKFPVEFENQKQDLGFLVYEDYFASR
>NZ_CP017479.1|WP_035634892.1|3744754_3745309_+|hypothetical-protein
MRKLKLQMNMTIDSFVGGVNGEQDWLERNQDSEFIKLYQKDIVDSADTLLLGRKMTDVFISHWESQYDNPNAVFARKLVDISKIVFSKTITTIAGKNVRVENGDLVTIVNQLKREKGKDILVYGGASFVSSLVKHNLIDEYNFFIHRTAIGNGLKIFTDPTKLKLISSKSFECGVVANQYKPEL
>NZ_CP017479.1|WP_035634889.1|3745562_3745913_-|helix-turn-helix-transcriptional-regulator
MPDIQDSNVEIAQNIKYLQDSLYVISGKWKLPILTAVHQGKTRFRDIQRSVNGITSKVLSKELKELEMNKLIVRKVYDNSPPTVEYTVSNYCDSLQNVVAELIDWGKHHRDKIRED
>NZ_CP017479.1|WP_051877664.1|3745979_3746912_+|NmrA/HSCARG-family-protein
MNNKKLILVAGATGTQGGAVVDALLAKNIAVRAIVRNKNSEGAKKLATKNVEVVEATFDDVESLTKAATGATGIFSMQLPSMPGEIGKETQHAKNLVAAAKTVGIEQIVHTSVARAGDQENFVDWDKGIWMPAYWEEKAAANNIVKEAGFSYWTIIKPPMMMENLLPSKSAVVFPTLAQDKLYTPLAPETKLEWISPADIGRFAAEAFAQPEKFNKKEFAIVGDKLTMLEIAEILTAVTDKPYKTKTVSVEEAVALGFYEPAAQSHVWQNVEGYKVDPQEAAEFGIETESLKTYLERNKFVLLEGDSNVK
>NZ_CP017479.1|WP_035634887.1|3747347_3748139_-|hypothetical-protein
MKIGIIGAGVIGKTLARKLASKGNQVQIANSKGPESLQDFASQNGLKALASKDVVIDVDLIVLTVPLGQLPNIKELFVDVPKEVIVVETMNYYPFRDGVIDEIENGLENSAWVQNQIGRPVIKAFNNIGAYSLYAEGKPEGTEGRIALAVSGDDENEKKVVIELVNQTGFDGYDAGSISESWKHQPGTPAYCTDLTLKEAKEAREKAIRENSAEARDFLLNKNIGLGEENINIILSGNYPDGFVDKAIDFNREYFGLPARVLN
>NZ_CP017479.1|WP_035635017.1|3748232_3748583_+|helix-turn-helix-transcriptional-regulator
MAKKKQYCECLNTVKPVRDTLEVINGKWKLPIIISVGVGNDRYTDIQESIPGLTPKVLAKELKDLEQHQLITRVIVDDHPVKISYKLTAYADTLTPIIYALKDWGINHKKKIFAQE

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Crispr_ID: NZ_CP017479_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017479_9

4309905-4310004

Orphan

Consensus_repeat	Method
ATTCCTCGTGCCTCGGAATGACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017479_9

>merge|NZ_CP017479|9|4309905-4310004|CRISPRCasFinder
ATTCCTCGTGCCTCGGAATGACAAAACGATGGTTTTTATCCTTAACTTAATGGCATTGCGCTCGCGCTAGCTGAGAATTCCTCGTTCCTCGGAATGACAA

>NZ_CP017479|9|9|4309905-4310004|CRISPRCasFinder
ATTCCTCGTGCCTCGGAATGACAA	AACGATGGTTTTTATCCTTAACTTAATGGCATTGCGCTCGCGCTAGCTGAGA
ATTCCTCGTTCCTCGGAATGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017479.1\|WP_035633145.1\|4301957_4303331_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NZ_CP017479.1\|WP_035633153.1\|4307537_4309778_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP017479.1\|WP_051877606.1\|4298898_4299759_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212168
NZ_CP017479.1\|WP_035633180.1\|4320863_4323719_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP017479.1\|WP_035633177.1\|4319498_4320548_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633164.1\|4314130_4314994_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NZ_CP017479.1\|WP_035633159.1\|4312057_4313461_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633156.1\|4310304_4311777_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
NZ_CP017479.1\|WP_035633141.1\|4300497_4300959_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP017479.1\|WP_035633292.1\|4316271_4317165_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP017479.1\|WP_035633166.1\|4315051_4316071_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP017479.1\|WP_156101288.1\|4313457_4314021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_081907212.1\|4317982_4319335_+\|galactose-oxidase	unknown	unknown	gnl\|CDD\|276965
NZ_CP017479.1\|WP_035633149.1\|4305908_4307255_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP017479.1\|WP_035633290.1\|4304708_4305620_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|187553
NZ_CP017479.1\|WP_035633170.1\|4317344_4317785_+\|ATPase	unknown	unknown	gnl\|CDD\|176910
NZ_CP017479.1\|WP_035633147.1\|4304096_4304636_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP017479.1\|WP_035633138.1\|4299895_4300396_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017479.1\|WP_035633143.1\|4301012_4301609_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP017479.1\|WP_035633288.1\|4303384_4303933_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|239526

Protein	Function_ID	Function_description	E-value
NZ_CP017479.1\|WP_035633145.1\|4301957_4303331_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	2.53626e-122
NZ_CP017479.1\|WP_035633153.1\|4307537_4309778_+\|sodium:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.54113e-63
NZ_CP017479.1\|WP_051877606.1\|4298898_4299759_+\|hypothetical-protein	gnl\|CDD\|212168	cd11669, TTHB210-like, Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, and similar proteins. TTHB210 is an uncharacterized protein found in Thermus thermophilus, and is controlled by the sigma(E) /anti-sigma(E) regulatory system. It is one of the five proteins of the extracytoplasmic function (ECF) sigma factor sigma(E)-regulated gene products whose physiological function have not been determined. Its crystallographic structure reveals a novel homodecamer although it is a dimer in solution.	4.36742e-28
NZ_CP017479.1\|WP_035633180.1\|4320863_4323719_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP017479.1\|WP_035633164.1\|4314130_4314994_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	5.51335e-105
NZ_CP017479.1\|WP_035633156.1\|4310304_4311777_-\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NZ_CP017479.1\|WP_035633141.1\|4300497_4300959_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.31435e-76
NZ_CP017479.1\|WP_035633292.1\|4316271_4317165_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.9391e-61
NZ_CP017479.1\|WP_035633166.1\|4315051_4316071_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP017479.1\|WP_081907212.1\|4317982_4319335_+\|galactose-oxidase	gnl\|CDD\|276965	sd00038, Kelch, Kelch repeat. Kelch repeats are 44 to 56 amino acids in length and form a four-stranded beta-sheet corresponding to a single blade of five to seven bladed beta propellers. The Kelch superfamily is a large evolutionary conserved protein family whose members are present throughout the cell and extracellularly, and have diverse activities. Kelch repeats are often in combination with other domains, like BTB and BACK or F-box domains.	4.82032e-21
NZ_CP017479.1\|WP_035633149.1\|4305908_4307255_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP017479.1\|WP_035633290.1\|4304708_4305620_-\|TIGR01777-family-protein	gnl\|CDD\|187553	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8. This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.79698e-115
NZ_CP017479.1\|WP_035633170.1\|4317344_4317785_+\|ATPase	gnl\|CDD\|176910	cd08901, SRPBCC_CalC_Aha1-like_8, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.20993e-46
NZ_CP017479.1\|WP_035633147.1\|4304096_4304636_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.17238e-08
NZ_CP017479.1\|WP_035633143.1\|4301012_4301609_-\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	2.51714e-69
NZ_CP017479.1\|WP_035633288.1\|4303384_4303933_+\|acyl-CoA-thioesterase	gnl\|CDD\|239526	cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.	4.39612e-57

>NZ_CP017479.1|WP_035633153.1|4307537_4309778_+|sodium:proton-antiporter
MSLLTDASETTSHLNPLISDLGLILMTATIAVLIFRKLKQPLVLGYLIAGFLAGNHFDFFPSVKEMKSVEVWAEIGVIFLLFSLGLEFSFKKLMKVGGTASITAGIQILSMCILGYFVGQWLGWPNMDSIFLGVILSISSTTIILKSYDELGVKTQKFAGIVIGSLIVQDILAILMMVLLSTVAVSNQFSGGDLLMSVLKLVFFLVIWFLGGIFIIPTVLKKTKHLLTDEMLLIISLALCLVMVIFAAKVGFSPALGAFIMGSIIAETTQAEHIEHLVKPVKDLFGAVFFVSVGMLINPHALYEHAIPVIILSFVTIFGQSVSATFGAILSGQPLKDSIRTGMSLSQIGEFSFIIATLGVTLKATNSFLYPIVVAVSAVTVFTTPFMIKYSLPFSEYLSHNLPRKWTKRIERYSASTQAIKTVSLWQTVINAFLIQVIVLVVIILAIILLSARFIQPLVIDYHLGNPLVALITLAIVSPFLWALAFRRVATREVEQLMLDRKSRGPLTMLFFIRIVLTIFFIGLLLNTFFSSKIALISLVIAVVIYLIFQKKLHFQYHKIENHFLSNLHDREISRAKRSRSDLTPWDGHMAVFDIAAESNIAGESLKNLQVRENLGINLVSIKRGDITIHIPSRNERIFPGDEICVIGTDAQVQEFKKYLDQHEMDVSPEVVEPDIVLRQIELKNHTFIGKSIKESKLREKTQGLIVGIEKRGIRTLNPESNVILEKDDILWIVGDKKLLSDLGHD
>NZ_CP017479.1|WP_035633149.1|4305908_4307255_+|adenylosuccinate-lyase
MTNLNELNAISPIDGRYRNKTVSLAPFFSEEALIKYRVLIEIEYFIALCEVPLPQLKNVDASLFESLRNIYKNFSTEDALWIKETEKVTNHDVKAVEYFIKDAFEKLGLSEYKEFIHFGLTSQDINNTAIPLSTKDAFEKVYMPSLISLTSKLKELAQEWAHVPMLARTHGQPASPTRLGKEIAVFVERLEEQMRLLFNTPFAAKFGGATGNYNAHHVAYPQIDWKQFGNKFVEENLGLHHSFPTTQIEHYDHFAAFFDALKRINTIIIDLDRDIWTYVSMEYFKQKIKAGEIGSSAMPHKVNPIDFENSEGNLGIANAIFEHLSAKLPVSRLQRDLTDSTVLRNIGVPMGHTLIAFEATLKGLNKLLLNESKFHEDLEKNWAVVAEAIQTILRREAYPNPYEALKGLTRTNEAIDKNAIHSFIATLDVSDAIKAELLQITPSNFIGI
>NZ_CP017479.1|WP_035633290.1|4304708_4305620_-|TIGR01777-family-protein
MKKNVLLTGGTGFVGRYLVAELLKKGYSVSILTRDSRPNADGISYYIWDVSNQKIDEVAVLNADYIIHLAGENIAEGRWATKRKEEIRSSRIDSAQLIYSVLKKHNKQVEAFVSASGIGFYGVVNGEGICTENTLPADDFLGKICQEWEKSASLMAGLGIRTVKIRTGMVLGRNGGVVKKLAPIFKYGLGSALGSGKQYMPWIHIHDLSRIYIEAIENKNMTGAYNATINDSTTNLSFSKTLASCMGRPMWLPNIPAFLIQLALGEMSCMVLKGRRVSSDKIKKLGFRFQFKGLKKALKDSLR
>NZ_CP017479.1|WP_035633147.1|4304096_4304636_+|YceI-family-protein
MKKFTLLALFSFLYPIIAQEKLSTSKCTIYFEASVPLFEAVEAKNDIVDCTLIPDKGQITFTAVIKNFQFKRDLMKEHFNSNYMESDRYSKAIFKGVIEKFDLKVITENDQDFLIKGKMTIHGQTRMIAVNAKIKKVANGISINSHFILNTDDFKIEIPSIVIAKISKTVNTKVDCVLY
>NZ_CP017479.1|WP_035633288.1|4303384_4303933_+|acyl-CoA-thioesterase
MEKAFKTVASSHVSISVLMLPSHTNFSGKIHGGYILSLLDQIAFACGSKFSGNYCVTASVDTVNFLKPIEVGELVTMKASVNYVGKSSMVVGIRVEAENIQTGHKKHCNSSYFTMVAKDNEGNSVPVPGLILSNFEDIKRFCNALKQIALKKEHDIHQEVFNYTSKETLENLKKYNIQINLD
>NZ_CP017479.1|WP_035633145.1|4301957_4303331_+|DNA-recombination-protein-RmuC
MSTLLPFLLVFIIALAIGIFIGKLIFSARFQSEKVSLEEKLIALNSQINQQKEQFSVEKIIFEKQLELANSEKENIRNEKDSLAIQLTKKEVDFENLWERNKEQKNEVEQLQEKFTKEFENLANKILDEKSNKFTEQNKENMKSILSPLQDKIQLFEKKVEDTHKESIDYHAALRQQILGLREMNAQMSKETINLTKALKGDSKMQGNWGELVLERVLEKSGLEKGREYEVQQSFTTEEGNRVFPDVVINLPDGKKMIVDSKVSLTAYEKYINEDEDETTKNRYLKEHVSSIKLHVEQLGNKNYQDLYQIESPDFVLLFIPMEPAFAIALNEDTTLYNKAFEKNIVIVTPSTLLATLRTIDSMWTNQKQQENAFEIARQAGALYDKFEGFVADLIKIGKKIDESKVEYQGAMNKLVDGKGNLITSVEKLKKMGAKAKKALPDNILRRAETDENTLLN
>NZ_CP017479.1|WP_035633143.1|4301012_4301609_-|pseudouridine-synthase
MSHRHFILHKPYGYLSQFIYELKRKKKLLGELYDFPEGTMAIGRLDEDSEGLLLLTTDGKMSEIIRSKKVDKEYYVQVDGIITPVAIEELKKGVEIGFNGGKYKTKPCEAFIVNEIPNFGPRGKKIRDERHGPTSWASITVNEGKFRQVRKMTSAVGFPTLRLIRVRIGEVHLLDLKAGEVLEVEDFNENINSENQII
>NZ_CP017479.1|WP_035633141.1|4300497_4300959_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MLNIVLVEPEIPNNTGNIGRLCVGTESRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEYQNIAEWMLQIPDKSRVFLMSSHASTSIYDAKFQDGDWLVFGKESVGLSKEVLALFENHLTIPMSPLIRSFNIANSVAFVVGEAKRQIRSKIFD
>NZ_CP017479.1|WP_035633138.1|4299895_4300396_+|hypothetical-protein
MKYLLKTALIFWIAIGSAQTKLELTPKGFLPLEIAMPNHPINELIEMSKDWAYSHYFVKGCDIFDVTTNSLTIEAPYENAYYYRNLGVEYDFDIKYTLKIVFGENQKYTLTFTVKEIYINNNPIKTTVTDFFTSEGILKDAFKEAKPSLEISVNKIIKSYTKYIAQ
>NZ_CP017479.1|WP_051877606.1|4298898_4299759_+|hypothetical-protein
MEHLYRIPKKIIVLGLLLFFFSCSQDETVNSNLQTNETQSFSAKMSNEKLNVFKGPEVALGYGKVRSWVSVNKEGFPSEIGIEITPEAFKNLSDENAKSVPPEGATIVVPLHEKAMQSTPFDHIGLNWNPHGHEPVGFFDVPHFDIHFYMISVEEQMAIPAWSPATNDAFNNYPPPGYLPADYGTPPGPATAEAEMGKHWAPNNLPTLLPFTKVLIYGTFDGEFIFIEPMITLNYFLSKEDFSIPYSQPDFFAKSGNYPTKYNVFHNSTNGNTYVTLSDFVWRTKK
>NZ_CP017479.1|WP_035633156.1|4310304_4311777_-|IMP-dehydrogenase
MKAHTSKIVGEGLTYDDVLLVPNYSTVLPREVSIKSKFSRNITLNVPIVSAAMDTVTESSMAIAMAQEGGIGVLHKNMTIEQQAAKVRRVKRAESGMIIDPVTLLMNSTVIDAKNAMREYGIGGIPIVDENKILKGIVTNRDLRFEKNGSRPIVEIMTSQNLVTVAEGTSLEEAEVVLQGHKIEKLPVVNDKNELVGLITFRDITKLAQKPNANKDKFGRLRVAAALGVTADAVERATALVNAGVDAVIIDTAHGHTKGVVDVLKAVKAKFPKLDVIVGNIATPEAAQYLVENGADGVKVGIGPGSICTTRIVAGVGFPQFSAVLEVAAAIKGTGVPVIADGGIRYTGDIPKAIAAGADCVMLGSLLAGTMESPGETIIFEGRKFKSYRGMGSVEAMQTGSKDRYFQDVEDDVKKLVPEGIVGRVPYKGELNESMLQFIGGLRAGMGYCGAKDIPTLQESGRFVRITSSGITESHPHNVTITKEAPNYSR
>NZ_CP017479.1|WP_035633159.1|4312057_4313461_-|hypothetical-protein
MRKMTILLCLTISFYCFSQNKEVLYNFTPQPQSLLLNPGADVKYKWFFGVPLLSGISVNGGSTGFDAYSLFANNNVDFSIKVQNVVDSTSRNDYVTANQQLEIFTAGLRIGGEENPSYLSFGMYQELDSFIYIPKDPAILALYGNKDYIGKSFNLGDLSAKAEVLSVFHVGFNKQLNEKLTVGIRGKIYSSIFNATSTHNSGYFYTVQGSNLIYDQVIKSDIQLNTSGAAKYLDENYDGDLATDFRKDIPKKAFFGGNLGLGMDLGLTYYPQKNIQLTASLVDFGFISHSKDVVNYTFKGEYDHKGVVNDFNDQGTAEDAYQDFKKAIPKEASYDKYTTQRPLKFYSSFQYSFEEERQTECDCATDEESWYRSAVGAQFFAMSTPRTPMLALTAYYRRRILKGLQMKATYTIDSYSFSNIGLGLTTKIGMFNFYAMADNLLAYSDLSKANALTFQIGFNIIAGGSSK
>NZ_CP017479.1|WP_156101288.1|4313457_4314021_-|hypothetical-protein
MKYRFYNRIVLITLLMLCSFSCSSDLNYDQVNKFNAKPVVVANLAYFHADAPDFVVNGNEVPLPPYTGPVGFFDNSFVNQNLIKAELNFRVKNTINRSFTIYITLKENDGTVVENIPISVEASVDGSEKLGYSDPSPFVFPESQIDLLKRTTQMTFEVNMDPGTPLTENSRGRIELSSSITAYFDVK
>NZ_CP017479.1|WP_035633164.1|4314130_4314994_-|hydroxymethylglutaryl-CoA-lyase
MKAIKIIECPRDAMQGIKAFIPTERKVSYIQSLLRVGFDTIDFGSFVSAKAIPQMRDTAEVLAQLDLSKTKSKLLAIIANYQGAELASQHSAIQYLGFPFSISENFQMRNTHKTIAQSLVTLEEILNLADKTNKETVAYLSMGFGNPYGDPWNVDIVAQWTEKLASMGVKILSLSDTVGSSTPEVIDYLFSNLIPQYPNIEFGAHLHTTPDKWLEKIDAAYKGGCRRFDGAIQGFGGCPMATDKLTGNMPTEKLLSYFTVQKEKTNCSPMSFESAYNEASKIFWEFH
>NZ_CP017479.1|WP_035633166.1|4315051_4316071_-|quinone-dependent-dihydroorotate-dehydrogenase
MYKTFIRPIFFCFDPEKVHHFTFSFIKLISKIPGIPSLLKVLYQVNDKRLETEVFGLKFKNPVGLAAGLDKDAVLYKELSNLGFGFIEIGTLTPKAQPGNDKKRLFRLIEDSGIINRMGFNNGGVLEAVDRLKKNDGVLIGGNIGKNKVTPNEDATSDYEICFDALYDYVDYFVVNVSSPNTPNLRELQEKEPLTQLLQTLQNKNLAKPKQKPILLKIAPDLTDEQLLDIIDIVNDTKIAGVIATNTTISRSGLRSVNQTETGGLSGKPLTSRSTEVIRFLSEKSNKAFPIIGVGGIHSAQDALEKLEAGASLIQLYTGFIYEGPALIKEINKAILSKK
>NZ_CP017479.1|WP_035633292.1|4316271_4317165_+|dienelactone-hydrolase-family-protein
MKKLTKEDISQEIFDLYDDYAHNKIERRQFIEKLSLFAIGSLTVPSLLSFMTPNYVDSITVKPDDPRLKSDYITYSSPKGGGSIKGLLSEPAEAKKKLPGIIVVHENRGLNPYIEDVGRRAALEGFITLAPDALTPLGGYPGNDDAGRELQKKRTREEMLEDFIAAYEYLKSHKDCNGYIGVVGFCFGGWIANMMAVKIPTLSAAVPYYGGQPTAEEAEKIKTPLLLQYAGLDTRVNEGWPAYETVLKKNKVEYTAYIYPGVNHGFHNNTTPRYDEAAATLSWTRTIDFFKEKLKKK
>NZ_CP017479.1|WP_035633170.1|4317344_4317785_+|ATPase
MNLTAKATIQIQKPITAVFEGIVNPEKMTNYFISESTGRMETGKELIWKFPEFPMEVPVKNIKTEINHSVSFVWDPETVVTIILEAQPDKSTVVKVTEDGKPYNEKNLKWALGNTEGWANFLACMKAYLEYGIQLRKGAFDFMRQN
>NZ_CP017479.1|WP_081907212.1|4317982_4319335_+|galactose-oxidase
MLKTVILFLLFFPAISIAQNSIGTVIGKKSNLPIEGVNITIKPFNSTTTTDKAGKFKLEKITELQKIDTLYFSHIGYTTKKISFNEFEKNEFTIFLDEQTELLDEVALSFSQNKQLKSKISYTKLAPLKYAISNFGSVLKDNKIYVIGGDASFKRDAWKKLQYENPDPTLTDFINELKYPNSAQMYKGNIMVYDIENDRWDVSKIKFRKRAYHNLNEYNNKIYVIGGKSISANGLFEYLDNKIEVFDINRQTITIDNTNPHQAAEFASFTYKNNLIVMGGSIKMSQKGIKQYTDKVHSYDFDSGYWYELESMPIAKETTGILIKDKIFLFGGFNGNPLSIIESFDLVTEKWQTEGNMFCTLSSPAIGSNNDLIYLFENEKIYTYNIYSKELKEYLINLPMKASKLFFLNEKLYLLGGYIENYYSKFPSPNLYSIDINEFKNTKPNRMIIL
>NZ_CP017479.1|WP_035633177.1|4319498_4320548_+|hypothetical-protein
MKTNIIFLFLFFSNLFIYSQKKPIEGDINNNLSIDFNGCVKSIEIKSSSFNEKNKTIDTTTAANKVFFAKNGNITKHVYFDKSHNNEWKTIEYDALERIKNIKIKEDGKTRIISEQFFNNFSDYPDSTNMYYYNNFKEQYINRFDKKKLIKQEFYTQDTLRHYNTYIYDKKGRLIKDFFINTENGFGITLGASITGDKDEKTLNPNDSIIFEYKKIKDTLITIKYRTKLWKEIKKEIKHKNFSLEILETYNRNFLGNSRHIYKSKDSISDCTYYYDEKRQIRSFFKTITTPKSIVSNWKSDSFYSNKEKTETINIETDYDTYNNWIKKKYSKDNITTSLITRKIEYYCH
>NZ_CP017479.1|WP_035633180.1|4320863_4323719_-|carbamoyl-phosphate-synthase-large-subunit
MPKDTSIKSVLIIGSGPIVIGQACEFDYAGSQSARSIREEGIEVILINSNPATIMTDPSMADHIYLKPLTTKSIIEILKEHPQIDAVLPTMGGQTALNLCLEAEEKGIWQDFGVKLIGVDVNAINITEDREQFKQLLEKIKVPTAPAKTATSFLEGKEIAQEFGFPLVIRPSFTLGGTGAAVVYKKEDFDVLLTRGLEASPIHEVLIDKALMGWKEYELELLRDKNDNVVIICSIENMDPMGIHTGDSITVAPAMTLSDRTFQKLRDYAILMMRSIGNFAGGCNVQFAVSPDEKEDIVAIEINPRVSRSSALASKATGYPIAKIASKLALGYNLDELQNQITKSTSALFEPTLDYVIVKIPRWNFDKFEGADRTLGLQMKSVGEVMGIGRSFQEALHKATQSLEIKRNGIGADGKGYKNYEQIIEKLTYASWDRVFVIYDAIAMGIPLSRIHEITKIDMWFLKQYEELYILEKEISNYKVETLPRELLLEAKQKGFADRQLAHMMSCLESDVHTLRLNMNINRVFKLVDTCAAEFKAKTPYYYSTFEAEIEKANGERYVDNESVVTDKKKIIVLGSGPNRIGQGIEFDYSCVHGVLAAKECGYETIMINCNPETVSTDFDTADKLYFEPVFWEHIIDIINHEKPEGVIVQLGGQTALKLADKLSKYGVKIIGTSFDALDLAEDRGRFSDLLTELHIPFPKFGIAETAEEASVLADTLDFPLLIRPSYVLGGQGMKIVINKQELEEHVIDLLKTIPGNKLLLDHYLDGAIEAEADAICDADGNVYIIGIMEHIEPCGVHSGDSNATLPPFNLGEFVMQQIKDHTHKIARALKTVGLINIQFAIKDDTVFIIEANPRASRTVPFIAKAYGEPYVNYATKVMLGHNKVTDFDFNPQLKGFAIKQPVFSFSKFPNVNKALGPEMKSTGESILFIDDLKDDQFYELYSRRKMYLSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	GQ452243	Enterococcus phage phiEf11, complete genome	34686-34711	4	0.846
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	NC_028671	Enterococcus phage vB_EfaS_IME197, complete genome	33499-33524	4	0.846
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	NZ_AP019369	Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence	43108-43133	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	NZ_CP014218	Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence	28043-28068	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	MN342150	Escherichia phage vB_EcoM_3HA11, complete genome	20373-20398	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	AP014312	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C72, * SEQUENCING IN PROGRESS *	1604-1629	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	NC_027119	Salmonella phage Det7, complete genome	5696-5721	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	NC_023856	Salmonella phage vB_SalM_SJ2, complete genome	128221-128246	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	KX171211	Salmonella phage vB_SenM-2, complete genome	5696-5721	5	0.808
NZ_CP017479_3	3.1\|1022116\|26\|NZ_CP017479\|CRISPRCasFinder	1022116-1022141	26	JN673056	Escherichia phage PhaxI, complete genome	106121-106146	5	0.808

1. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to GQ452243 (Enterococcus phage phiEf11, complete genome) position: , mismatch: 4, identity: 0.846

aacaagaatttgaaatcaagaattta	CRISPR spacer
aactaaaatttgaaatcaagaatgaa	Protospacer
*** *.*****************  *

2. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 4, identity: 0.846

aacaagaatttgaaatcaagaattta	CRISPR spacer
aactaaaatttgaaatcaagaatgaa	Protospacer
*** *.*****************  *

3. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to NZ_AP019369 (Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
aacaagaatttagaatcaagaatggt	Protospacer
***********..**********

4. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
tgaaagaatttgaaattaagtattta	Protospacer
 . *************.*** *****

5. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to MN342150 (Escherichia phage vB_EcoM_3HA11, complete genome) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
gtgaagaatatgaaatcaagaatcta	Protospacer
.  ****** *************.**

6. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to AP014312 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
tcaaagaattttaaatcaagaaatta	Protospacer
   ******** ********** ***

7. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to NC_027119 (Salmonella phage Det7, complete genome) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
gtgaagaatatgaaatcaagaatcta	Protospacer
.  ****** *************.**

8. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to NC_023856 (Salmonella phage vB_SalM_SJ2, complete genome) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
gtgaagaatatgaaatcaagaatcta	Protospacer
.  ****** *************.**

9. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to KX171211 (Salmonella phage vB_SenM-2, complete genome) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
gtgaagaatatgaaatcaagaatcta	Protospacer
.  ****** *************.**

10. spacer 3.1|1022116|26|NZ_CP017479|CRISPRCasFinder matches to JN673056 (Escherichia phage PhaxI, complete genome) position: , mismatch: 5, identity: 0.808

aacaagaatttgaaatcaagaattta	CRISPR spacer
gtgaagaatatgaaatcaagaatcta	Protospacer
.  ****** *************.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017479

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection