CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017456	Campylobacter jejuni subsp. jejuni str. RM3420 chromosome, complete genome	3 crisprs	DEDDh,WYL,cas2,cas1,csa3	0	6	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017456_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017456_1

69406-69569

Orphan

Consensus_repeat	Method
AATTTAAATAAAGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP017456_1

>merge|NZ_CP017456|1|69406-69569|PILER-CR
AATTTAAATAAAGAAAACAAAGACTTAAACAAAGATTTTAATAAAGAGTTAAATAAAAATCAAGAAAAAAACAATTTAAATCAAGAAAATATACAAGATCAAAATAAAAATTTAAAGAACAATAATCAAAATTTAAATCTTGATAAAAATTTAAATAAAGAAAT

>NZ_CP017456|1|1|69406-69569|PILER-CR
AATTTAAATAAAGAAAA	CAAAGACTTAAACAAAGATTTTAATAAAGAGTTAAATAAAAATCAAGAAAAAAAC
AATTTAAATCAAGAAAA	TATACAAGATCAAAATAAAAATTTAAAGAACAATAATCAAAATTTAAATCTTGATAAA
AATTTAAATAAAGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017456.1\|WP_002857652.1\|64346_65390_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225797
NZ_CP017456.1\|WP_002857760.1\|71234_72872_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|224663
NZ_CP017456.1\|WP_002857687.1\|62973_64323_+\|DUF2130-domain-containing-protein	unknown	unknown	gnl\|CDD\|226889
NZ_CP017456.1\|WP_002851977.1\|77422_78439_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP017456.1\|WP_002911175.1\|72875_74747_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP017456.1\|WP_079862338.1\|76633_76849_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP017456.1\|WP_002799607.1\|66214_68023_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP017456.1\|WP_167557091.1\|76787_77027_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP017456.1\|WP_002857680.1\|60970_61672_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225414
NZ_CP017456.1\|WP_002857729.1\|75974_76124_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017456.1\|WP_052791715.1\|53008_56746_+\|Eco57I-restriction-modification-methylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223934
NZ_CP017456.1\|WP_002857707.1\|61668_62871_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP017456.1\|WP_002857711.1\|56747_59222_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|376607
NZ_CP017456.1\|WP_070363961.1\|74747_75467_-\|bacteriohemerythrin	unknown	unknown	gnl\|CDD\|225331
NZ_CP017456.1\|WP_002857661.1\|65567_66215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017456.1\|WP_002851927.1\|76346_76691_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP017456.1\|WP_002782892.1\|68157_68481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017456.1\|WP_032602925.1\|77131_77395_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP017456.1\|WP_002857684.1\|59243_60941_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234767
NZ_CP017456.1\|WP_002805290.1\|70346_71231_+\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|139245

Protein	Function_ID	Function_description	E-value
NZ_CP017456.1\|WP_002857652.1\|64346_65390_-\|c-type-cytochrome	gnl\|CDD\|225797	COG3258, COG3258, Cytochrome c [Energy production and conversion].	9.36644e-130
NZ_CP017456.1\|WP_002857760.1\|71234_72872_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|224663	COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion].	2.24663e-99
NZ_CP017456.1\|WP_002857687.1\|62973_64323_+\|DUF2130-domain-containing-protein	gnl\|CDD\|226889	COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown].	8.96456e-84
NZ_CP017456.1\|WP_002851977.1\|77422_78439_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	5.63815e-166
NZ_CP017456.1\|WP_002911175.1\|72875_74747_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	2.8364e-31
NZ_CP017456.1\|WP_079862338.1\|76633_76849_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	3.16768e-08
NZ_CP017456.1\|WP_002799607.1\|66214_68023_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP017456.1\|WP_002857680.1\|60970_61672_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225414	COG2859, COG2859, Uncharacterized protein conserved in bacteria [Function unknown].	2.70774e-85
NZ_CP017456.1\|WP_052791715.1\|53008_56746_+\|Eco57I-restriction-modification-methylase-domain-containing-protein	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	5.80786e-51
NZ_CP017456.1\|WP_002857707.1\|61668_62871_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.90254e-88
NZ_CP017456.1\|WP_002857711.1\|56747_59222_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.01123e-05
NZ_CP017456.1\|WP_070363961.1\|74747_75467_-\|bacteriohemerythrin	gnl\|CDD\|225331	COG2703, COG2703, Hemerythrin [Inorganic ion transport and metabolism].	2.51687e-45
NZ_CP017456.1\|WP_002851927.1\|76346_76691_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	3.0951e-25
NZ_CP017456.1\|WP_167557091.1\|76787_77027_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.00369e-10
NZ_CP017456.1\|WP_032602925.1\|77131_77395_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	1.31251e-12
NZ_CP017456.1\|WP_002857684.1\|59243_60941_+\|hypothetical-protein	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0.000377028
NZ_CP017456.1\|WP_002805290.1\|70346_71231_+\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|139245	PRK12812, flgD, flagellar basal body rod modification protein; Reviewed.	2.24585e-119

>NZ_CP017456.1|WP_002782892.1|68157_68481_+|hypothetical-protein
MSKPLNEEIFVEFKSDLAERKNEVLLQVLELLETFRSDENEKMARISSELTEILENEENLEKILNAKNLEELLNILTALNEDKMIKVYEDSYLKEKFPNVMVDKFLK
>NZ_CP017456.1|WP_002799607.1|66214_68023_-|translational-GTPase-TypA
MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDSNDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQEGVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFAIVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVGKIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIAGFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERLEAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDGVKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFRSQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLFIEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERALEWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS
>NZ_CP017456.1|WP_002857661.1|65567_66215_-|hypothetical-protein
MDLKSLENNRLYILKRLGILKFLSIIEALLIGFLAFVFIRDALIAVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGLTKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILNANKNPSFENEEQIYIKLTDKNFALNHIFSKENHYLIATLSNPFFIDIKKDFENNFKNLEENLNSIKNKLFK
>NZ_CP017456.1|WP_002857652.1|64346_65390_-|c-type-cytochrome
MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSKRPVQEWPNKNLSINNVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCHMDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSKEMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGERGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDEDALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVKYGPWKNPNHFPGE
>NZ_CP017456.1|WP_002857687.1|62973_64323_+|DUF2130-domain-containing-protein
MQNLNQNEQIKCPSCGSFIDISTALYVQILDKAKQEMLKQKKEFDDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLTQKQNFQKEFSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEEAFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQGSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYESKRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVLAVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEKRALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED
>NZ_CP017456.1|WP_002857707.1|61668_62871_-|multidrug-effflux-MFS-transporter
MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSFQTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDIYAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGILLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKRFLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARLVLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTLAMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYFLIKIKEKK
>NZ_CP017456.1|WP_002857680.1|60970_61672_-|SIMPL-domain-containing-protein
MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQKEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIIDRLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILEKISSLAKFGIVTKIDDYDIEYLYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYIKTIRVVSTIEYYLKD
>NZ_CP017456.1|WP_002857684.1|59243_60941_+|hypothetical-protein
MKEFDEKLAQYGIFTINGVENIDLIKKEIVLENISIERIDFNILQEKGIKRLIIKNSEILEIYFSKTNNFFIYFLNCDFKCKLIAKKCIFQDQVKFIKCIFEKCVDFNASKFKSKVSFTISIFKENARFIKTEFLAKCNNHKIIENNFKEVKFCNNVTFRRAKFESKVSFAISIFKENARFIKTEFLAKCNNHKIIENNFSETIFYNKTNFYKAKIVSKIDFKISRFKGEIRFAETKFLSKLDNEIANNFREVVFEDKVYFNKTKINTQINFKMAKFKNNVEFVNLHNNVSFNNVNFKGIVNFENLNINTLNFKNVIFNNIVSFDNISFDNNCKPNFENCTFSDQFNIEHKYIEYKFDEIEKTQEYDKLLNYRDLFRKLKSNRIAHHNLIDASELRAQELYARELELKHKENKSLKEKIERWQLVFYRKLCDHHTDLLLNLKWLVVVIGLFALLYFASRMIQDISLLKALNQYGVCLSIVGVFNLLCLYWFGCIKKFDFFVYLNLIVVLWVICYMPKIIFGIVNIIGDKSYNGFENALITIYTILLALVLFSLQKTARKNSIVPS
>NZ_CP017456.1|WP_002857711.1|56747_59222_+|pentapeptide-repeat-containing-protein
MYKGRDDLISPEEAEKGVEIVSKICGVDKEKIHYPTVECNGVNISNQEFDFFSTGLLDTDFKYEIKFTNCKFGCLEYFCLYKTSNSFLIFENCEFDYICLNNDLVTNNTFELNNKLYFFDCKFNENIDIGKVNINAEIKFNGCIFKDVFYFNVKEYLASIKIKNCTFYKSFFMLGSFKNEARFDNSIFKDYADFHECEFEKTASFYGVRFEKAPNFSACYFKEPKAVNLTNVNIDKLDFKSLEQYIKDNYQDGNYKNAIKNNEKIQKDEKELYRIENEHKLRCAKNLKDSFRVIKDVLINQNNTLEAQEWHKLELYAKEKELEIQLSKNKNDNLKKESKNQVYNPKDYEKFNYSKIISLIIFLLKTIGYLSVNILIIIELVLVAPFFTIMFYCVYVVFFIYKILTFILKSFYPLDINKFIIFWRIKFNKIKRKLIVSGRKMLDFTLWFDCVLLQVYRNTSNHHTNFLKILNFTILMISLYAFMGFVFSKTINFISSFNSVSIIIANYFILFALIMVFFNVKRQLYQQGSILFFGIFGIFIILMMSFLLPVYIPTFCFLVYFASILFFYLLFLCEIKLFVFILRLVAYGCLIVVIILKPQLINPFVGIFSSDKLYESQFEKSLNDLNASAIVNLASILQNDFNLHLKDQNISFTELNSAKALIMANKEKLKEILSKVYNDKYESDYKKVLNELENNTSNVKNIIEEIDNKNNNSVVSAQLNKFLKLNFSQEIDILYAIKSNFSISEKLSPEQMALFDQKDSQDKLKSVLALLKFKSSFEGILEVINQDEIIQNIIKSTSVLYSIILLLCIFSLQKTARKNSIVPS
>NZ_CP017456.1|WP_052791715.1|53008_56746_+|Eco57I-restriction-modification-methylase-domain-containing-protein
MKFEAINEKEFLNPYHRKKPILETELNEFIKTLKDYKINLENNLKNNEDSLVANALSKFFENLSFQCEVKSIHKGNSGIDLALKKDGLTQVIIEAKLPHSREFFSPSKPNCKALHECILYYLRERKALNSSLKHIIITDFYSFFIFKADLFEELFNKNKYFKEAFENFESKNSLFKGNTDEIYKEFEKILNGDSTLKGLFVDLKPILEQDKLSFSKLKPLFKIFSKDCLLGEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESKEEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFKKIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLKLFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLGNVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKEDKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILITGRKGEFIEYKRPKTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIELLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERINKYKRIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFVDKFKKEMKSFNDKCEKYSKKYGNFLAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEILDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLKDRGGVLSYITSNKYTRAGYGEALREFLLKNVKFLEYTDLNGIKVFDSATVDTSILCFEKSKSKDNKFKYLALSNEILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAKIERIGTPLKEWYGLNINYGIKTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKMLRGRDIKRYSYEWAGLWVINTHNGYKNQNGEKVEAINIKHYPSLKKHFDEFYPQLEKRADKGLTPYNLRNCAYLDEFEKEKIVWNPVSGEYLFSYIKEHIFFNNSLFMMTLDVFSLKYILAFMNSNCYKWLITLKTNLIQTGSYAYGAKDKIERLPIPKINSKNEKLANELINLVDEILKAKEQDKNANTQELENKINSIVYKLYNLTEEEIKIIEGK
>NZ_CP017456.1|WP_002805290.1|70346_71231_+|flagellar-basal-body-rod-modification-protein
MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQKLSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYDSNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANYGTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSDGDSSGSGSTEDGDKEEKA
>NZ_CP017456.1|WP_002857760.1|71234_72872_+|flagellar-hook-protein-FlgE
MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQDGIAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR
>NZ_CP017456.1|WP_002911175.1|72875_74747_-|DUF342-domain-containing-protein
MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKPAKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLKASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSIKEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIYRILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHTGYCITNNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVNGNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKNVFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSDTECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLYHDIIKKYNYLSISYKKLIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPNTNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS
>NZ_CP017456.1|WP_070363961.1|74747_75467_-|bacteriohemerythrin
MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQHKNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDIVKISQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRAEKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNATFEDALQNHHFTTQKNDMGGG
>NZ_CP017456.1|WP_002857729.1|75974_76124_+|hypothetical-protein
MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITTTQLKI
>NZ_CP017456.1|WP_002851927.1|76346_76691_+|anion-permease
MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQLQILWCFIFSLR
>NZ_CP017456.1|WP_079862338.1|76633_76849_+|anion-permease
MFITATAPNPLVLYFLSPLEIKSTPNAFTFTKDKLKELVKMKNSEKIMLSVFVSLLLLWAGALGLFFWNFS
>NZ_CP017456.1|WP_167557091.1|76787_77027_+|anion-permease
MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEVLAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA
>NZ_CP017456.1|WP_032602925.1|77131_77395_+|anion-permease
MYQQCFFVFLVQLALGAPPLLYAFIMIASGNVMMALTHYAIGTAPVIFGTGCVTLKKWWSIGFVISIVDIVVMIAVGLIWWKILGFY
>NZ_CP017456.1|WP_002851977.1|77422_78439_-|tRNA-2-thiouridine(34)-synthase-MnmA
MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEENIKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGKHEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIASGFIE

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Crispr_ID: NZ_CP017456_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017456_2

1326546-1326625

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017456_2

>merge|NZ_CP017456|2|1326546-1326625|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP017456|2|1|1326546-1326625|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017456.1\|WP_002876259.1\|1328687_1330763_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017456.1\|WP_002922653.1\|1332639_1333125_+\|host-nuclease-inhibitor-Gam-family-protein	unknown	unknown	gnl\|CDD\|377819
NZ_CP017456.1\|WP_002804146.1\|1326968_1327667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017456.1\|WP_002780456.1\|1321813_1322638_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP017456.1\|WP_002824157.1\|1331947_1332133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017456.1\|WP_002804142.1\|1328490_1328691_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274987
NZ_CP017456.1\|WP_002795448.1\|1331759_1331951_+\|DNA-directed-RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|377380
NZ_CP017456.1\|WP_002855922.1\|1320316_1321810_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP017456.1\|WP_002779147.1\|1318270_1318495_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP017456.1\|WP_002876317.1\|1333183_1334146_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316042
NZ_CP017456.1\|WP_002791419.1\|1332191_1332533_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017456.1\|WP_002855339.1\|1326145_1326472_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP017456.1\|WP_002855470.1\|1325572_1326118_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP017456.1\|WP_002806833.1\|1330833_1331757_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NZ_CP017456.1\|WP_002855324.1\|1323309_1324512_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP017456.1\|WP_002855528.1\|1322641_1323313_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP017456.1\|WP_002804144.1\|1327666_1328341_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NZ_CP017456.1\|WP_002855354.1\|1316848_1318189_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP017456.1\|WP_002780453.1\|1324514_1325513_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP017456.1\|WP_002869130.1\|1315472_1316840_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469

Protein	Function_ID	Function_description	E-value
NZ_CP017456.1\|WP_002876259.1\|1328687_1330763_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.01361e-16
NZ_CP017456.1\|WP_002922653.1\|1332639_1333125_+\|host-nuclease-inhibitor-Gam-family-protein	gnl\|CDD\|377819	pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This family consists of bacterial and phage Gam proteins. The gam gene of bacteriophage Mu encodes a protein which protects linear double stranded DNA from exonuclease degradation in vitro and in vivo.	8.71077e-36
NZ_CP017456.1\|WP_002855339.1\|1326145_1326472_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP017456.1\|WP_002780456.1\|1321813_1322638_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP017456.1\|WP_002804142.1\|1328490_1328691_+\|hypothetical-protein	gnl\|CDD\|274987	TIGR04111, conserved_hypothetical_protein, phage-associated protein, BcepMu gp16 family. Members of this protein family occur in Burkholderia phage BcepMu, Pseudomonas phage B3, and Burkholderia phage KS10, and many bacterial putative prophage regions. The member from Burkholderia phage BcepMu is named gp16. Homology suggests DNA-binding activity. [Mobile and extrachromosomal element functions, Prophage functions].	0.000964293
NZ_CP017456.1\|WP_002795448.1\|1331759_1331951_+\|DNA-directed-RNA-polymerase-sigma-70-factor	gnl\|CDD\|377380	pfam04545, Sigma70_r4, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.	1.41194e-05
NZ_CP017456.1\|WP_002855922.1\|1320316_1321810_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.22221e-157
NZ_CP017456.1\|WP_002779147.1\|1318270_1318495_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP017456.1\|WP_002876317.1\|1333183_1334146_+\|hypothetical-protein	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	5.82895e-11
NZ_CP017456.1\|WP_002855470.1\|1325572_1326118_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.16494e-57
NZ_CP017456.1\|WP_002806833.1\|1330833_1331757_+\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	6.87849e-23
NZ_CP017456.1\|WP_002855324.1\|1323309_1324512_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP017456.1\|WP_002855528.1\|1322641_1323313_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP017456.1\|WP_002804144.1\|1327666_1328341_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.37895e-20
NZ_CP017456.1\|WP_002855354.1\|1316848_1318189_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	6.39541e-118
NZ_CP017456.1\|WP_002780453.1\|1324514_1325513_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_CP017456.1\|WP_002869130.1\|1315472_1316840_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0

>NZ_CP017456.1|WP_002855339.1|1326145_1326472_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP017456.1|WP_002855470.1|1325572_1326118_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP017456.1|WP_002780453.1|1324514_1325513_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP017456.1|WP_002855324.1|1323309_1324512_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP017456.1|WP_002855528.1|1322641_1323313_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP017456.1|WP_002780456.1|1321813_1322638_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP017456.1|WP_002855922.1|1320316_1321810_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENPMPLKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP017456.1|WP_002779147.1|1318270_1318495_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP017456.1|WP_002855354.1|1316848_1318189_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNAVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTEKNTPIWINDQKLDPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELNKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLNSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGHIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP017456.1|WP_002869130.1|1315472_1316840_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFGVTTQDIIDTGLVLQFKEAMTLIKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLDVPNISWQPARDRFIELGFVLGNINTTFNKIAHEILILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP017456.1|WP_002804146.1|1326968_1327667_-|hypothetical-protein
MLYFIIAILIIIIALFIYSGFKTESKLKKIADGVLTKQDLKEIEVISKYYEISLIEAAKIHYGKAIITEEMIERLERPYRELYEQYKKLSINEQGKFLHNLLLNNQDEYAEAIRFIQIAEESVNIALKSKNKDIAESRRKLALEIEQKIQKGYPKAYGLIIDIIQLLEDNYDVNLFENQCIKYYEEAQKLKTIKSKQKRIDYINDLIKEAEINPKIDEKFVNFWKNKVKEIQ
>NZ_CP017456.1|WP_002804144.1|1327666_1328341_-|LexA-family-transcriptional-regulator
MYKTTDILNRVYAILNITDDKEFCGIYEIKPNTLSTWRTRNTIPYELLLKISKEQNISLDSIFFGKMRINDDNLQLRYYTDVAAAAGYGAINSKLEYTEIVISKKFACEALGLPPLTRLDIIKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVINLDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVVNIDQISCAEIIGVVCKAISIKTFENAIIKYE
>NZ_CP017456.1|WP_002804142.1|1328490_1328691_+|hypothetical-protein
MLKQYFEDNGINLKKFAQKHNLHYMSLFRVVNGLYSEKYKAKANTKAVFEKLLELKIIDKLPEVCV
>NZ_CP017456.1|WP_002876259.1|1328687_1330763_+|DDE-type-integrase/transposase/recombinase
MIYFLETKEAAQAFSVSTGALRLAVSRNSNKYEWLKVDNEKGGRGGKKLLFKISKDGLLTAFNKQLISKNTLIYDEKMQKVKLSEIITTDNLKTANNSLKTSNLNLTESKMNDDLAVLNLKFENLSDEIKNNAREKLKALKQVEKYIEGGLKQKRALEICGISKIEIFRIRKAYKENGILGLIDTRGLHRKDKTKLSAWMQEYALREYRTFGAGGFNFTELWWQIHKEAAQKESYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGLDRAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIVRDDETLEPFRPHILSVVDVFSGMGVATLVSKSNSLSLTRLLWKAIDKFGKPDMIKGDNGKDYLSKDFQSLLDGLNITYDAAIAYAGEQKALVERRFGTLQHAGISKMHGHIGNSLAKREMIEQKTPKKERKAKDEYGFAKKTNQKLLLTFSEACEFLEAEVIKWNMSKVRRKKGVKTPLELWNSCDRAIVKISYEEFLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTKVKCVQNIDNIKELFIYDLSGNFLCLALDESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAAFTKLNIKQDLQDLQSAFENSLVEAKEVHQKSLAKEALKTQRELEEIKNNANADELILNAKKEINNDESEFDMEAFVEKKYFAG
>NZ_CP017456.1|WP_002806833.1|1330833_1331757_+|AAA-family-ATPase
MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKEGSSYKYASKVEPLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAGTGKSRAIKEYAAKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASELARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEYGQLSSRIGAKWELKGLCYQNKEGLKDEDLKTLCNHFDVEEKKAIDLVFNLARGNFRKSEKLLKRACEFADGKAVELKHIEAAASFLMLG
>NZ_CP017456.1|WP_002795448.1|1331759_1331951_+|DNA-directed-RNA-polymerase-sigma-70-factor
MSFEEIAKELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETIDLIKKEKAKKENLIQGEKK
>NZ_CP017456.1|WP_002824157.1|1331947_1332133_+|hypothetical-protein
MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYIAKKIIRFHLGKKLNKSA
>NZ_CP017456.1|WP_002791419.1|1332191_1332533_+|hypothetical-protein
MALVYVASPYKALVVRESQRKAQAISIAQQECLKIMRECEGFVPVSPILQFSYLDENKHRDKALQMGLELLKACDYIYLSKHKDAKYSQGMQEELALAKKLGIKELVLELPLQ
>NZ_CP017456.1|WP_002922653.1|1332639_1333125_+|host-nuclease-inhibitor-Gam-family-protein
MQINSFEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGEIKVLSDELGYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLENLIKAFKSYNLNECIIYKEELNKDAIVELDDTTLVKLGLKRVIKDNFRIEPKIESLEIQN
>NZ_CP017456.1|WP_002876317.1|1333183_1334146_+|hypothetical-protein
MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGKSYLSAAISKTLCKDARVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTSAYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMALHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFINTKTLNIKNTDLQNAKISDKEEAFIDKVLKLLNEKSLSTSEILLALDVSRSDNFSRNTLEKFKGVFWESELGGENGRTFVWKSLKADNKDSNDKELSLFGNEL

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP017456_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017456_3

1481152-1481583

Unclear

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

6 spacers

cas2,cas1

The CRISPR arrays of NZ_CP017456_3

>merge|NZ_CP017456|3|1481152-1481583|CRISPRCasFinder,CRT,PILER-CR
GGGTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGCATTGCTTTACTACATAGCCAGTCGTGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATTTAATGTTGTGTAAAGCGATAATGGTATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGGGTGATATTGTTATGAGTATTATGAAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGCAGAAAATGGAGATAGACAAGATTTTCCTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTCCATTCTCATAAAATATTTAGCCATTATTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATTTGAACGCTTAAAATCAAGAAAATATTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP017456|3|2|1481152-1481583|CRISPRCasFinder
GGGTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCATTGCTTTACTACATAGCCAGTCGTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTAATGTTGTGTAAAGCGATAATGGTAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGTGATATTGTTATGAGTATTATGAAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCAGAAAATGGAGATAGACAAGATTTTCCT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCCATTCTCATAAAATATTTAGCCATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATTTGAACGCTTAAAATCAAGAAAATATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP017456|3|1|1481152-1481583|CRT
GGGTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCATTGCTTTACTACATAGCCAGTCGTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTAATGTTGTGTAAAGCGATAATGGTAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGTGATATTGTTATGAGTATTATGAAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCAGAAAATGGAGATAGACAAGATTTTCCT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCCATTCTCATAAAATATTTAGCCATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATTTGAACGCTTAAAATCAAGAAAATATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP017456|3|2|1481218-1481583|PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTAATGTTGTGTAAAGCGATAATGGTAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGTGATATTGTTATGAGTATTATGAAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCAGAAAATGGAGATAGACAAGATTTTCCT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCCATTCTCATAAAATATTTAGCCATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATTTGAACGCTTAAAATCAAGAAAATATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017456.1\|WP_002851546.1\|1491871_1492321_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP017456.1\|WP_002855819.1\|1476360_1477509_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP017456.1\|WP_012006785.1\|1475343_1476057_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP017456.1\|WP_002855859.1\|1492449_1493670_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP017456.1\|WP_002855660.1\|1477632_1479174_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP017456.1\|WP_002851537.1\|1475177_1475369_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP017456.1\|WP_002780989.1\|1482152_1483043_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP017456.1\|WP_002856113.1\|1488715_1489321_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP017456.1\|WP_071616136.1\|1486409_1487645_+\|C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611
NZ_CP017456.1\|WP_002855997.1\|1489317_1490067_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP017456.1\|WP_002851264.1\|1471735_1472377_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP017456.1\|WP_002855824.1\|1470806_1471739_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP017456.1\|WP_002856438.1\|1479397_1479844_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP017456.1\|WP_002856561.1\|1479175_1479397_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP017456.1\|WP_002855524.1\|1490769_1491807_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP017456.1\|WP_002855730.1\|1479847_1481038_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP017456.1\|WP_002855427.1\|1487665_1488655_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP017456.1\|WP_171770385.1\|1481728_1482142_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP017456.1\|WP_022552433.1\|1472373_1475178_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP017456.1\|WP_002856551.1\|1490041_1490773_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539

Protein	Function_ID	Function_description	E-value
NZ_CP017456.1\|WP_002851546.1\|1491871_1492321_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP017456.1\|WP_002855819.1\|1476360_1477509_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP017456.1\|WP_012006785.1\|1475343_1476057_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000581315
NZ_CP017456.1\|WP_002855859.1\|1492449_1493670_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP017456.1\|WP_002855660.1\|1477632_1479174_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	5.51224e-118
NZ_CP017456.1\|WP_002851537.1\|1475177_1475369_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP017456.1\|WP_002780989.1\|1482152_1483043_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.70973e-121
NZ_CP017456.1\|WP_002856113.1\|1488715_1489321_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	8.14455e-71
NZ_CP017456.1\|WP_071616136.1\|1486409_1487645_+\|C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	6.98481e-62
NZ_CP017456.1\|WP_002855997.1\|1489317_1490067_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.75008e-93
NZ_CP017456.1\|WP_002851264.1\|1471735_1472377_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP017456.1\|WP_002855824.1\|1470806_1471739_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.52433e-86
NZ_CP017456.1\|WP_002856438.1\|1479397_1479844_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.17534e-42
NZ_CP017456.1\|WP_002856561.1\|1479175_1479397_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	6.20963e-11
NZ_CP017456.1\|WP_002855524.1\|1490769_1491807_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.6328e-34
NZ_CP017456.1\|WP_002855730.1\|1479847_1481038_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.43135e-142
NZ_CP017456.1\|WP_002855427.1\|1487665_1488655_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP017456.1\|WP_171770385.1\|1481728_1482142_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.3054e-55
NZ_CP017456.1\|WP_022552433.1\|1472373_1475178_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP017456.1\|WP_002856551.1\|1490041_1490773_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	8.6877e-99

>NZ_CP017456.1|WP_002855730.1|1479847_1481038_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPIENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP017456.1|WP_002856438.1|1479397_1479844_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MEHFTLYQDSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFNEWQKRVDFDGITLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYTKERSTKLCGAGLLKG
>NZ_CP017456.1|WP_002856561.1|1479175_1479397_+|MoaD/ThiS-family-protein
MVKVEFLGPINKDNLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKTGDKIALLPPVCGG
>NZ_CP017456.1|WP_002855660.1|1477632_1479174_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIQVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNTTAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVELPKKLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVCPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP017456.1|WP_002855819.1|1476360_1477509_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN
>NZ_CP017456.1|WP_012006785.1|1475343_1476057_-|molecular-chaperone-TorD-family-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP017456.1|WP_002851537.1|1475177_1475369_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP017456.1|WP_022552433.1|1472373_1475178_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP017456.1|WP_002851264.1|1471735_1472377_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP017456.1|WP_002855824.1|1470806_1471739_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP017456.1|WP_171770385.1|1481728_1482142_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP017456.1|WP_002780989.1|1482152_1483043_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALISNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP017456.1|WP_071616136.1|1486409_1487645_+|C4-dicarboxylate-transporter-DcuC
MFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLDVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK
>NZ_CP017456.1|WP_002855427.1|1487665_1488655_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP017456.1|WP_002856113.1|1488715_1489321_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENALELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP017456.1|WP_002855997.1|1489317_1490067_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>NZ_CP017456.1|WP_002856551.1|1490041_1490773_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLIMIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP017456.1|WP_002855524.1|1490769_1491807_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NZ_CP017456.1|WP_002851546.1|1491871_1492321_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP017456.1|WP_002855859.1|1492449_1493670_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDEGLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017456_3	3.4\|1481386\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481386-1481415	30	MN530981	Campylobacter phage DA10, complete genome	1266-1295	0	1.0
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	MN530981	Campylobacter phage DA10, complete genome	11419-11448	1	0.967
NZ_CP017456_3	3.2\|1481254\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481254-1481283	30	MN530981	Campylobacter phage DA10, complete genome	4021-4050	3	0.9
NZ_CP017456_3	3.5\|1481452\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481452-1481481	30	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	837-866	4	0.867
NZ_CP017456_3	3.4\|1481386\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481386-1481415	30	NC_012226	Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence	14925-14954	6	0.8
NZ_CP017456_3	3.4\|1481386\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481386-1481415	30	NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	22956-22985	6	0.8
NZ_CP017456_3	3.6\|1481518\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481518-1481547	30	NZ_CP046714	Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence	7687-7716	6	0.8
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	KY971610	Pseudomonas phage PspYZU05, complete genome	126696-126725	7	0.767
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	KC821622	Cellulophaga phage phi46:3, complete genome	14280-14309	7	0.767
NZ_CP017456_3	3.6\|1481518\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481518-1481547	30	KX119200	Helicobacter phage FrMEG235U, complete genome	2736-2765	7	0.767
NZ_CP017456_3	3.6\|1481518\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481518-1481547	30	KX119201	Helicobacter phage FrANT170U, complete genome	2736-2765	7	0.767
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	6747-6776	8	0.733
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	525015-525044	8	0.733
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	525064-525093	8	0.733
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	24958-24987	8	0.733
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	728910-728939	8	0.733
NZ_CP017456_3	3.3\|1481320\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481320-1481349	30	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	812921-812950	8	0.733
NZ_CP017456_3	3.5\|1481452\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481452-1481481	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	562145-562174	8	0.733
NZ_CP017456_3	3.4\|1481386\|30\|NZ_CP017456\|CRISPRCasFinder,CRT,PILER-CR	1481386-1481415	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	284688-284717	9	0.7
NZ_CP017456_2	2.1\|1326569\|34\|NZ_CP017456\|CRISPRCasFinder	1326569-1326602	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 3.4|1481386|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gcagaaaatggagatagacaagattttcct	CRISPR spacer
gcagaaaatggagatagacaagattttcct	Protospacer
******************************

2. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
aggggtgatattgttatgagtattatgcaa	Protospacer
*************************** **

3. spacer 3.2|1481254|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 3, identity: 0.9

atttaatgttgtgtaaagcgataatggtat	CRISPR spacer
atttaatgttgtataaagtgataatggtac	Protospacer
************.*****.**********.

4. spacer 3.5|1481452|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 4, identity: 0.867

tccattc-tcataaaatatttagccattatt	CRISPR spacer
-ctattcatcataaaatttttagccattata	Protospacer
 *.**** ********* ************

5. spacer 3.4|1481386|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NC_012226 (Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence) position: , mismatch: 6, identity: 0.8

gcagaaaatggagatagacaagattttcct	CRISPR spacer
gtagaaaatggagatggacaaaattcacat	Protospacer
*.*************.*****.***. * *

6. spacer 3.4|1481386|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019601 (Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence) position: , mismatch: 6, identity: 0.8

gcagaaaatggagatagacaagattttcct	CRISPR spacer
gtagaaaatggagatggacaaaattcacat	Protospacer
*.*************.*****.***. * *

7. spacer 3.6|1481518|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046714 (Nostoc sp. ATCC 53789 plasmid pNsp_k, complete sequence) position: , mismatch: 6, identity: 0.8

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tatttgaacctttaaaatcaagaaatccgt	Protospacer
********* .************** .  *

8. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 7, identity: 0.767

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
cgctgtgatatttttatgagtattatttca	Protospacer
 *  ******** *************   *

9. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to KC821622 (Cellulophaga phage phi46:3, complete genome) position: , mismatch: 7, identity: 0.767

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
acggaatgtattgttatgagtatgatgaag	Protospacer
* **.  .*************** *****.

10. spacer 3.6|1481518|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 7, identity: 0.767

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tttttgaacgcttaaaagcaagattttgat	Protospacer
* *************** *****   *. *

11. spacer 3.6|1481518|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 7, identity: 0.767

tatttgaacgcttaaaatcaagaaaatatt	CRISPR spacer
tttttgaacgcttaaaagcaagattttgat	Protospacer
* *************** *****   *. *

12. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
ataataaatattgttatgagtattttgata	Protospacer
* ..  .***************** *** *

13. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.733

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
ataataaatattgttatgagtattttgata	Protospacer
* ..  .***************** *** *

14. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.733

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
ataataaatattgttatgagtattttgata	Protospacer
* ..  .***************** *** *

15. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
ataataaatattgttatgagtattttgata	Protospacer
* ..  .***************** *** *

16. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
ataataaatattgttatgagtattttgata	Protospacer
* ..  .***************** *** *

17. spacer 3.3|1481320|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.733

aggggtgatattgttatgagtattatgaaa	CRISPR spacer
ataataaatattgttatgagtattttgata	Protospacer
* ..  .***************** *** *

18. spacer 3.5|1481452|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.733

tccattctcataaaatatttagccattatt	CRISPR spacer
ggaactctcataaaatatttatccaataac	Protospacer
   *.**************** *** ** .

19. spacer 3.4|1481386|30|NZ_CP017456|CRISPRCasFinder,CRT,PILER-CR matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 9, identity: 0.7

gcagaaaatggagatagacaagattttcct	CRISPR spacer
atagaaaatggagatagaaaagagaaggat	Protospacer
..**************** ****      *

20. spacer 2.1|1326569|34|NZ_CP017456|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1303567 : 1399514

108

Campylobacter_phage(43.9%)

tail,transposase,plate,tRNA,terminase,capsid,integrase

attL 1296500:1296517|attR 1371335:1371352

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1296500:1296517	attL	NA	NA	NA	NA
WP_002858009.1\|1303567_1304890_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_002911027.1\|1304886_1306692_+	selenocysteine-specific translation elongation factor	NA	NA	NA	NA
WP_002855861.1\|1306740_1307451_+	DsbA family protein	NA	NA	NA	NA
WP_002911030.1\|1307456_1307987_+	hypothetical protein	NA	NA	NA	NA
WP_002855629.1\|1308031_1308523_-	flavodoxin FldA	NA	NA	NA	NA
WP_002855895.1\|1308522_1309218_-	hypothetical protein	NA	NA	NA	NA
WP_002855637.1\|1309220_1309535_-	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_002856117.1\|1309705_1311130_+	catalase	A0A2K9L0T1	Tupanvirus	2.2e-91	44.8
WP_002855628.1\|1311186_1311657_+	Cj1386 family hemin-binding protein	NA	NA	NA	NA
WP_002855654.1\|1311657_1312314_-	transcriptional regulator	NA	NA	NA	NA
WP_002779137.1\|1312481_1312844_+	RidA family protein	NA	NA	NA	NA
WP_002855728.1\|1312847_1314287_+	C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_002855396.1\|1314299_1315463_+	PLP-dependent transferase	NA	NA	NA	NA
WP_002869130.1\|1315472_1316840_+	adenylosuccinate lyase	A0A1B1ISB0	uncultured_Mediterranean_phage	1.7e-08	23.9
WP_002855354.1\|1316848_1318189_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_002779147.1\|1318270_1318495_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_002855922.1\|1320316_1321810_-	hydrogenase small subunit	NA	NA	NA	NA
WP_002780456.1\|1321813_1322638_-	enoyl-ACP reductase FabI	F2NZ40	Diadromus_pulchellus_ascovirus	1.4e-05	24.6
WP_002855528.1\|1322641_1323313_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_002855324.1\|1323309_1324512_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_002780453.1\|1324514_1325513_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002855470.1\|1325572_1326118_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA
WP_002855339.1\|1326145_1326472_+	ribosome silencing factor	NA	NA	NA	NA
WP_070363984.1\|1326502_1326889_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_002804146.1\|1326968_1327667_-	hypothetical protein	NA	NA	NA	NA
WP_002804144.1\|1327666_1328341_-	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804142.1\|1328490_1328691_+	hypothetical protein	NA	NA	NA	NA
WP_002876259.1\|1328687_1330763_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002806833.1\|1330833_1331757_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_002795448.1\|1331759_1331951_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|1331947_1332133_+	hypothetical protein	NA	NA	NA	NA
WP_002791419.1\|1332191_1332533_+	hypothetical protein	NA	NA	NA	NA
WP_002922653.1\|1332639_1333125_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	8.4e-19	33.3
WP_002876317.1\|1333183_1334146_+	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|1334142_1334412_+	hypothetical protein	NA	NA	NA	NA
WP_070363985.1\|1334411_1335104_+	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|1335100_1335550_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002873721.1\|1335596_1335872_+	hypothetical protein	NA	NA	NA	NA
WP_002876312.1\|1335863_1336535_-	endonuclease	NA	NA	NA	NA
WP_002784523.1\|1336628_1336913_+	DNA-binding protein	NA	NA	NA	NA
WP_002872705.1\|1337034_1337241_+	CJH_07325 family protein	J9SI91	Campylobacter_phage	2.8e-32	100.0
WP_002872706.1\|1337227_1338019_+	hypothetical protein	NA	NA	NA	NA
WP_002872707.1\|1337983_1338961_-\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784520.1\|1338954_1339146_-\|tail	tail protein X	NA	NA	NA	NA
WP_002876309.1\|1339138_1339513_-\|tail	phage tail protein	NA	NA	NA	NA
WP_002909482.1\|1339638_1340877_-	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
WP_070363986.1\|1340878_1342249_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	4.5e-17	26.6
WP_002875116.1\|1342258_1343929_-\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	3.0e-92	41.4
WP_002803360.1\|1343928_1344528_-	DUF1804 family protein	NA	NA	NA	NA
WP_002855185.1\|1344520_1344979_-	DUF1320 family protein	NA	NA	NA	NA
WP_002876307.1\|1345094_1346072_-\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	5.6e-06	23.4
WP_002875114.1\|1346074_1346602_-	hypothetical protein	NA	NA	NA	NA
WP_002876306.1\|1346604_1347420_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784501.1\|1347421_1347856_-	hypothetical protein	NA	NA	NA	NA
WP_070363987.1\|1348004_1348394_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.7e-22	46.7
WP_002854893.1\|1348404_1348746_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1348742_1348991_+	hypothetical protein	NA	NA	NA	NA
WP_002784492.1\|1349102_1349417_+	hypothetical protein	NA	NA	NA	NA
WP_070363988.1\|1349416_1350049_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.7e-08	34.6
WP_002795239.1\|1350245_1350536_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002876444.1\|1350532_1351699_+\|plate	baseplate J/gp47 family protein	Q8H9N3	Vibrio_phage	3.0e-14	24.6
WP_070363989.1\|1351695_1352316_+\|tail	phage tail protein I	A7YH02	Campylobacter_phage	1.9e-60	99.2
WP_032593245.1\|1352315_1353347_+\|tail	phage tail protein	A7YGH9	Campylobacter_phage	9.6e-190	100.0
WP_002875277.1\|1353371_1353878_+	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	2.0e-87	100.0
WP_002922150.1\|1353874_1354246_+	DUF1353 domain-containing protein	A7YGA5	Campylobacter_phage	8.8e-69	100.0
WP_002922154.1\|1354345_1355353_+	hypothetical protein	A7YGT6	Campylobacter_phage	7.7e-192	100.0
WP_070363990.1\|1355371_1356565_+\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	1.9e-197	99.7
WP_002865376.1\|1356591_1357101_+\|tail	phage major tail tube protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_002843342.1\|1357253_1357493_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	3.2e-11	62.5
WP_002784655.1\|1357604_1357910_-	hypothetical protein	A7YG98	Campylobacter_phage	4.7e-36	100.0
WP_070363991.1\|1357951_1360174_+\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	99.9
WP_002875578.1\|1360177_1360666_+	phage virion morphogenesis protein	A7YG96	Campylobacter_phage	1.6e-89	100.0
WP_002922158.1\|1360770_1361586_+	DNA adenine methylase	A7YG95	Campylobacter_phage	6.3e-152	100.0
WP_019109140.1\|1361613_1361901_-	hypothetical protein	A7YG94	Campylobacter_phage	1.9e-47	100.0
WP_002875224.1\|1361980_1362175_-	hypothetical protein	A7YG72	Campylobacter_phage	5.1e-28	98.4
WP_002865000.1\|1362184_1362505_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_019108975.1\|1362585_1363215_-	S24 family peptidase	A7YGK7	Campylobacter_phage	2.6e-60	100.0
WP_002855912.1\|1365483_1366854_-	phosphoglucosamine mutase PgmL	A0A127AWJ1	Bacillus_phage	4.6e-54	33.4
WP_002855429.1\|1366975_1367512_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_002856648.1\|1367512_1367860_+	holo-ACP synthase	NA	NA	NA	NA
WP_002780440.1\|1367860_1368280_-	hypothetical protein	NA	NA	NA	NA
WP_002855843.1\|1368276_1369638_-	cytochrome P450	A0A2I2L481	Orpheovirus	7.5e-33	24.6
WP_002855346.1\|1369634_1370756_-	hypothetical protein	NA	NA	NA	NA
WP_002855724.1\|1370828_1372013_-	capsule polysaccharide modification protein KpsS	NA	NA	NA	NA
1371335:1371352	attR	NA	NA	NA	NA
WP_002856070.1\|1372041_1374108_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_002855668.1\|1374104_1374617_-	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	3.5e-07	30.4
WP_002856271.1\|1374606_1375368_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	2.6e-06	56.9
WP_002855862.1\|1375369_1375972_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_070363992.1\|1375962_1378302_-	hypothetical protein	NA	NA	NA	NA
WP_002856053.1\|1378316_1379078_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002856640.1\|1379130_1379904_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_052791688.1\|1379958_1381791_-	DUF2972 domain-containing protein	NA	NA	NA	NA
WP_002856242.1\|1381783_1383292_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002856497.1\|1383302_1383935_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_002856260.1\|1383924_1385001_-	histidinol-phosphate aminotransferase family protein	A0A1X7QHI1	Faustovirus	1.2e-22	27.5
WP_050552853.1\|1384987_1385785_-	glycosyl transferase	NA	NA	NA	NA
WP_002855879.1\|1387506_1388682_-	nucleotide sugar dehydrogenase	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	6.2e-100	49.2
WP_002855956.1\|1388707_1390831_-	glycosyltransferase	NA	NA	NA	NA
WP_002856049.1\|1390830_1391778_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.2e-39	32.5
WP_002856463.1\|1391787_1393446_-	polysaccharide export protein	NA	NA	NA	NA
WP_002856521.1\|1393447_1394566_-	capsule polysaccharide transporter	NA	NA	NA	NA
WP_002856664.1\|1394565_1395228_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.2e-06	21.6
WP_002855788.1\|1395224_1396007_-	ABC transporter permease	NA	NA	NA	NA
WP_002855970.1\|1396078_1396486_-	hypothetical protein	NA	NA	NA	NA
WP_002856198.1\|1396562_1397126_+	intracellular survival protein CiaI	NA	NA	NA	NA
WP_002856332.1\|1397161_1397851_+	dUTPase	NA	NA	NA	NA
WP_002855706.1\|1397852_1398566_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_002856149.1\|1398548_1399514_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017456

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection