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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016212 Pseudomonas putida JB chromosome, complete genome 6 crisprs DEDDh,csa3,cas3,DinG,WYL 0 2 7 0

Results visualization

1. NZ_CP016212
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016212_1 721603-721701 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016212_2 1819276-1819382 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016212_3 3623915-3624050 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016212_4 4159061-4159220 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016212_5 4887491-4887644 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016212_6 5544171-5544279 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016212_3 3.1|3623946|20|NZ_CP016212|PILER-CR 3623946-3623965 20 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 126064-126083 1 0.95
NZ_CP016212_2 2.1|1819315|29|NZ_CP016212|CRISPRCasFinder 1819315-1819343 29 NC_016115 Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence 20322-20350 4 0.862
NZ_CP016212_2 2.1|1819315|29|NZ_CP016212|CRISPRCasFinder 1819315-1819343 29 NZ_CP007144 Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence 63924-63952 5 0.828
NZ_CP016212_2 2.1|1819315|29|NZ_CP016212|CRISPRCasFinder 1819315-1819343 29 MT771343 Gordonia phage Clown, complete genome 44305-44333 7 0.759

1. spacer 3.1|3623946|20|NZ_CP016212|PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.95

ccccggccttggcgccggcg	CRISPR spacer
gcccggccttggcgccggcg	Protospacer
 *******************

2. spacer 2.1|1819315|29|NZ_CP016212|CRISPRCasFinder matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 4, identity: 0.862

ggcgggtggcggtctgtg-ggggcgggttt	CRISPR spacer
cgcgggtggcggtctgtgaggggcaggtc-	Protospacer
 ***************** *****.***. 

3. spacer 2.1|1819315|29|NZ_CP016212|CRISPRCasFinder matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 5, identity: 0.828

ggcgggtggcggtctgtggg--ggcgggttt	CRISPR spacer
ggcgggtggcggcctgtggggtggctggc--	Protospacer
************.*******  *** **.  

4. spacer 2.1|1819315|29|NZ_CP016212|CRISPRCasFinder matches to MT771343 (Gordonia phage Clown, complete genome) position: , mismatch: 7, identity: 0.759

ggcgggtggcggtctgtgggggcgggttt	CRISPR spacer
cctgggtggcggtcggtgggggcggggcc	Protospacer
  .*********** *********** ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 302915 : 365948 57 Bacillus_virus(37.5%) transposase,holin,protease NA
DBSCAN-SWA_2 1126753 : 1134532 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_3 2061163 : 2073377 12 uncultured_Caudovirales_phage(66.67%) tRNA NA
DBSCAN-SWA_4 2134108 : 2201305 92 uncultured_Caudovirales_phage(63.49%) capsid,integrase,terminase,tail,protease attL 2138646:2138705|attR 2200459:2200550
DBSCAN-SWA_5 2598397 : 2608410 13 uncultured_Caudovirales_phage(44.44%) NA NA
DBSCAN-SWA_6 3671114 : 3744018 98 uncultured_Caudovirales_phage(44.64%) capsid,integrase,terminase,coat,tail,transposase attL 3659731:3659747|attR 3697918:3697934
DBSCAN-SWA_7 4489668 : 4561494 84 uncultured_Caudovirales_phage(36.96%) capsid,portal,lysis,holin,head,terminase,plate,tail,tRNA,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage