CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017658	Spiroplasma sp. TU-14, complete genome	4 crisprs	cas3	1	1	1	0

1. NZ_CP017658

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017658_1

• CRISPR_ID: NZ_CP017658_1
• CRISPR_location: 239293-239400
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP017658_1

Consensus_repeat	Method
CCCCTGTGGCAAAGAAAGAAGCTG	CRISPRCasFinder

spacers of NZ_CP017658_1

>1.1|239317|60|NZ_CP017658|CRISPRCasFinder
ACCAAGCGGCGTCAAAAGCAGCACCAAGGGTGAAAGCAACGCCAACAGCAGCTTCAAAAA

CRISPR arrays and Neighbor proteins around NZ_CP017658_1

CRISPR arrays

The CRISPR arrays of NZ_CP017658_1

>merge|NZ_CP017658|1|239293-239400|CRISPRCasFinder
CCCCTGTGGCAAAGAAAGAAGCTGACCAAGCGGCGTCAAAAGCAGCACCAAGGGTGAAAGCAACGCCAACAGCAGCTTCAAAAACCCCTGTGGCAAAGAAAGAATCTG

>NZ_CP017658|1|1|239293-239400|CRISPRCasFinder
CCCCTGTGGCAAAGAAAGAAGCTG	ACCAAGCGGCGTCAAAAGCAGCACCAAGGGTGAAAGCAACGCCAACAGCAGCTTCAAAAA
CCCCTGTGGCAAAGAAAGAATCTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017658.1|WP_070406461.1|237196_237535_+|50S-ribosomal-protein-L22	unknown	unknown	gnl|CDD|234793
NZ_CP017658.1|WP_070406457.1|234208_234979_+|50S-ribosomal-protein-L3	unknown	unknown	gnl|CDD|234564
NZ_CP017658.1|WP_070406470.1|241606_241996_+|30S-ribosomal-protein-S8	unknown	unknown	gnl|CDD|234658
NZ_CP017658.1|WP_070406456.1|233040_233526_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406459.1|235627_235915_+|50S-ribosomal-protein-L23	unknown	unknown	gnl|CDD|376308
NZ_CP017658.1|WP_040092918.1|233835_234144_+|30S-ribosomal-protein-S10	unknown	unknown	gnl|CDD|179076
NZ_CP017658.1|WP_070406468.1|240846_241389_+|50S-ribosomal-protein-L5	unknown	unknown	gnl|CDD|178791
NZ_CP017658.1|WP_040092927.1|236892_237168_+|30S-ribosomal-protein-S19	unknown	unknown	gnl|CDD|178985
NZ_CP017658.1|WP_070406467.1|240504_240825_+|50S-ribosomal-protein-L24	unknown	unknown	gnl|CDD|234566
NZ_CP017658.1|WP_070406466.1|240122_240491_+|50S-ribosomal-protein-L14	unknown	unknown	gnl|CDD|180117
NZ_CP017658.1|WP_070406471.1|242020_242560_+|50S-ribosomal-protein-L6	unknown	unknown	gnl|CDD|235495
NZ_CP017658.1|WP_070406469.1|241401_241587_+|type-Z-30S-ribosomal-protein-S14	unknown	unknown	gnl|CDD|181216
NZ_CP017658.1|WP_071890198.1|242965_243583_+|30S-ribosomal-protein-S5	unknown	unknown	gnl|CDD|234790
NZ_CP017658.1|WP_070406472.1|242581_242947_+|50S-ribosomal-protein-L18	unknown	unknown	gnl|CDD|235524
NZ_CP017658.1|WP_070406458.1|235001_235628_+|50S-ribosomal-protein-L4	unknown	unknown	gnl|CDD|235404
NZ_CP017658.1|WP_070406463.1|238312_238726_+|50S-ribosomal-protein-L16	unknown	unknown	gnl|CDD|236411
NZ_CP017658.1|WP_070406460.1|235970_236807_+|50S-ribosomal-protein-L2	unknown	unknown	gnl|CDD|236488
NZ_CP017658.1|WP_070406462.1|237554_238313_+|30S-ribosomal-protein-S3	unknown	unknown	gnl|CDD|234722
NZ_CP017658.1|WP_070406473.1|243595_244033_+|50S-ribosomal-protein-L15	unknown	unknown	gnl|CDD|235523
NZ_CP017658.1|WP_070406465.1|239845_240103_+|30S-ribosomal-protein-S17	unknown	unknown	gnl|CDD|235532

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP017658.1|WP_070406461.1|237196_237535_+|50S-ribosomal-protein-L22	gnl|CDD|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	2.39181e-60
NZ_CP017658.1|WP_070406457.1|234208_234979_+|50S-ribosomal-protein-L3	gnl|CDD|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	1.30359e-114
NZ_CP017658.1|WP_070406470.1|241606_241996_+|30S-ribosomal-protein-S8	gnl|CDD|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	1.02469e-75
NZ_CP017658.1|WP_070406459.1|235627_235915_+|50S-ribosomal-protein-L23	gnl|CDD|376308	pfam00276, Ribosomal_L23, Ribosomal protein L23.	1.00185e-32
NZ_CP017658.1|WP_040092918.1|233835_234144_+|30S-ribosomal-protein-S10	gnl|CDD|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	2.87935e-53
NZ_CP017658.1|WP_070406468.1|240846_241389_+|50S-ribosomal-protein-L5	gnl|CDD|178791	PRK00010, rplE, 50S ribosomal protein L5; Validated.	4.34474e-117
NZ_CP017658.1|WP_040092927.1|236892_237168_+|30S-ribosomal-protein-S19	gnl|CDD|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	4.89144e-60
NZ_CP017658.1|WP_070406467.1|240504_240825_+|50S-ribosomal-protein-L24	gnl|CDD|234566	PRK00004, rplX, 50S ribosomal protein L24; Reviewed.	8.25382e-33
NZ_CP017658.1|WP_070406466.1|240122_240491_+|50S-ribosomal-protein-L14	gnl|CDD|180117	PRK05483, rplN, 50S ribosomal protein L14; Validated.	7.15432e-73
NZ_CP017658.1|WP_070406471.1|242020_242560_+|50S-ribosomal-protein-L6	gnl|CDD|235495	PRK05498, rplF, 50S ribosomal protein L6; Validated.	1.6532e-99
NZ_CP017658.1|WP_070406469.1|241401_241587_+|type-Z-30S-ribosomal-protein-S14	gnl|CDD|181216	PRK08061, rpsN, type Z 30S ribosomal protein S14.	9.81856e-34
NZ_CP017658.1|WP_071890198.1|242965_243583_+|30S-ribosomal-protein-S5	gnl|CDD|234790	PRK00550, rpsE, 30S ribosomal protein S5; Validated.	1.36942e-98
NZ_CP017658.1|WP_070406472.1|242581_242947_+|50S-ribosomal-protein-L18	gnl|CDD|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	1.27521e-57
NZ_CP017658.1|WP_070406458.1|235001_235628_+|50S-ribosomal-protein-L4	gnl|CDD|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	4.82756e-109
NZ_CP017658.1|WP_070406463.1|238312_238726_+|50S-ribosomal-protein-L16	gnl|CDD|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.21865e-89
NZ_CP017658.1|WP_070406460.1|235970_236807_+|50S-ribosomal-protein-L2	gnl|CDD|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_CP017658.1|WP_070406462.1|237554_238313_+|30S-ribosomal-protein-S3	gnl|CDD|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	6.70819e-120
NZ_CP017658.1|WP_070406473.1|243595_244033_+|50S-ribosomal-protein-L15	gnl|CDD|235523	PRK05592, rplO, 50S ribosomal protein L15; Reviewed.	1.01982e-69
NZ_CP017658.1|WP_070406465.1|239845_240103_+|30S-ribosomal-protein-S17	gnl|CDD|235532	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed.	1.34605e-43

Protein sequences

>NZ_CP017658.1|WP_070406463.1|238312_238726_+|50S-ribosomal-protein-L16
MLVPKRTKYRRPHRIKYEGKAKGNTKVDFGEFGLQSLDGAWITNRQIEAARIAMTRYMKRWGKVWIRIFPHMAKTKKPLEVRMGSGKGSPEEWVAVVKTGTVMFEVAGVSEETAREALRLAMHKLPVRCKIIKKGEE
>NZ_CP017658.1|WP_070406462.1|237554_238313_+|30S-ribosomal-protein-S3
MGQKVSPTGLRVGVIKTWDSRWYAEKQDYVNWLHQDIKIRKALMKKLKGASVSKIEIERTKKEIVIFIRTARVGVVLGQEGKNIAELVKLVRVTIGDRKMEVKINVVEIKNPDTDAQLVANTIAEQIVNRASFRTVQKLAIKKAMKAGAQGIKTSVAGRLGGVDMARTEGYTEGTVPLATLRSDIDYALAEALTTYGQIGVKVWICKGEILSKDLVTTSDEKPKFERRDFDRSNNNRREYPPRSHSAPKEAK
>NZ_CP017658.1|WP_070406461.1|237196_237535_+|50S-ribosomal-protein-L22
MDVRANLRSIRISPRKVRLVADLIRNKKVGDAIVILNNTNKKSSVPVQKLVKSAVANAVNNNGLDADRLFIKEIFVNEGPTLKRFRPRAHGRAYEILKRTSHITVTVSDGQQ
>NZ_CP017658.1|WP_040092927.1|236892_237168_+|30S-ribosomal-protein-S19
MSRSLKKGPFVDKHLQKKVEALNAINKKEVVKTWSRRSVIFPEFIGHTFAVHNGKEHIPVYVTEDMVGHKLGEFSPTRKFGGHGDDKKKKK
>NZ_CP017658.1|WP_070406460.1|235970_236807_+|50S-ribosomal-protein-L2
MPIKSFKPVTPSRRNMTTLDYSVLTTDRPEKSLIETRKRHAGRNNQGVITTRHKGGGHKVKYRIIDFKRNKDDIVGKIVTIEYDPNRNAFICLVNYVDGEKRYILAPKTIKVGMQIISGEKTDIKVGNCMQLKNIPEGTVLHNLELRPGKGGQLARAAGSSVQLLGKDEDGKYVTIRLTSGEVRKVLAECRATIGEVGNEDYGLVNWGKAGRNRWRGIRPTVRGSVMNPNDHPHGGGEGKAPVGRKAPMTPWGKKALGVKTRNKKKASTKLIVRRRTK
>NZ_CP017658.1|WP_070406459.1|235627_235915_+|50S-ribosomal-protein-L23
MHITNVIKKPILSEKTYRNMADGVYTFEVARTANKVQIKKAFEKIFEVKVEKVNVINYDPKEKKMGKFVGETTYTKRAIIKLKPGEKLDLLGEDK
>NZ_CP017658.1|WP_070406458.1|235001_235628_+|50S-ribosomal-protein-L4
MKLQVLDAKGSSIKEISVNKTIWGIEPHQQAMFDAVVAQQASMRQGTHKTKTRTEVSGGGRKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKNYLKHVNKKVRKLAIKSALSLKTQDKNLVVIDQFGIEQPSTKAMVEVLNNLKVNDEKLLIITTEGDEVNFKSSRNIKKINIITSAGINVYDLLNADKLLITEQAVKAIEEVYA
>NZ_CP017658.1|WP_070406457.1|234208_234979_+|50S-ribosomal-protein-L3
MKGILGRKIGMTQVFATDGRLIPVTVVEVQPNVVLQVLTKEKNGYQALQIAVEDKRINLVSKPDQGQFKKANTTPKRFVKEIRNMDGYNSGDIIKADIFTAGEFVDVTGTSKGKGFTGSIKRHNYSRGPMGHGSGYHRGVGSMGPIAPNRILKSKKMPGHMGTEKVTIQNLEVVAIDTVKNALLVKGSIPGPNKQFVVIKETIKGLTPKTPTELIKRTVDPKTPESEIKTEKPVDTVAEAPVEAAPATDAPASVAE
>NZ_CP017658.1|WP_040092918.1|233835_234144_+|30S-ribosomal-protein-S10
MAQTKMRIKLKGYDHRVVDQSIQKIIEAAQAAGVKVKGPIPLPTDREIITILRATHKYKDSREQFEMRTHKRIIDIINPDGPKVIDTLKRVQLPSGVEIEMK
>NZ_CP017658.1|WP_070406456.1|233040_233526_-|hypothetical-protein
MANKKDDKTIIWKKSTNVEHDLRYEKIQEFKAQIVKIEFDNLARKTSRAHEVYRKTTKKPQLDKKKIIDKNNPMYKILLNAQKKNNQLRKQAFKTDDPNYIDVNNMTVADRVKVVKLAKKNSPYYRQLLLEKNTTGLSELARKRKIEMMRQGTQPKKRVKK
>NZ_CP017658.1|WP_070406465.1|239845_240103_+|30S-ribosomal-protein-S17
MERNSRKVLQGRVISDKSEKTITVLVETYKNHPLYKKRVRYSKKYLAHDELEQAHIGDKVSIMETRPLSKTKHFRLIEVIEKAIG
>NZ_CP017658.1|WP_070406466.1|240122_240491_+|50S-ribosomal-protein-L14
MIQQESRLKVADNSGAKEVLVIKNLGGSWRKFTNIGDIVVCTIKKATPGGIVKKGQIVKAVIVRTKRGLKRTDGTQIQFSENAVVLIKDDKTPRGTRIFGPIAREVKDAGFGKIASLAPEVL
>NZ_CP017658.1|WP_070406467.1|240504_240825_+|50S-ribosomal-protein-L24
MSKVKFKKGDLVKVVTGKHKGTEGPIIRVLREKNRVVIEGITNIKHVKPSQDNTEGGIQQVPASIHISNVALIDPKNKKEITKISYQVADSGKKVRIARKSKAHLA
>NZ_CP017658.1|WP_070406468.1|240846_241389_+|50S-ribosomal-protein-L5
MNVDLEKKYKDVIVKELFKEQGYQSIMQVPVVKKIVVNMGAGDAAQNSKVIEDITNELALITGLHPVVTKAKGSIAAFKLREGMPIGAKVTLRGKKMYQFLDKLINIALPRVRDFRGVSLDAFDGRGNYTLGIKEQIIFPEIDYDKVKKIRGMDITIVTNATNNSDAHALLVKMGMPFKK
>NZ_CP017658.1|WP_070406469.1|241401_241587_+|type-Z-30S-ribosomal-protein-S14
MAKKSLKVKQQRHPKFKVRGYTRCGNCGRPHAVLRKFNLCRLCFRTLAYKGQIPGVRKASW
>NZ_CP017658.1|WP_070406470.1|241606_241996_+|30S-ribosomal-protein-S8
MMIDTIADMLTRIRNANQRLHKSVNMPSSKMKVRIAEILKEEGYVEDFKVSGDVKKELSLTLKYKGKTKVISGLKRISKPGLRVYVTVEKVPQVLNGMGIAIISTSQGIMTDKAAKHAHLGGEVIAYVW
>NZ_CP017658.1|WP_070406471.1|242020_242560_+|50S-ribosomal-protein-L6
MSRIGNRELKIPTGVEVTIQPNNVIVKSTKGQLEQAIPSVITVNAKDGIVTTERANDVKHSKQLHGTINSLIQGMLEGVSKGFKKELEINGVGYRAALAGDKLTLNLGYSHPIEYKIPQGITITLPKPTQIVVEGISKQLVGEVAANIRNYRKPEPYKGKGVKYKDEHIIRKEGKSAGK
>NZ_CP017658.1|WP_070406472.1|242581_242947_+|50S-ribosomal-protein-L18
MANSQSQSRSAKRKKRHFRVRAKINGTSAIPRLNVFKSNGHFYAQLIDDVKQTTIVAASTLKMADLKSTSNIVAAKKVGTDIAKKALDKKVTTVVFDRGGYLYHGKVKAFAEAAREAGLKF
>NZ_CP017658.1|WP_071890198.1|242965_243583_+|30S-ribosomal-protein-S5
MAENKAGLTPNTGTPTSGQPPKGDFSRNNPRQPHQRSERNFDRRGEDNMFEEKVVTIRRVTKVTKGGRHFRFAAVVVIGDKKGRVGFGTGKANEVPDAIKKAIKEAKKQLVKVPLVGTTVPHEIIGHFGAGKVLIKPARKGTGVIAGGPARAVIELAGLADVYTKSLGSNTPINMIRATLDGLRNLRTVEQIAKLRGKTPEELQG
>NZ_CP017658.1|WP_070406473.1|243595_244033_+|50S-ribosomal-protein-L15
MKLNELQYTEGARHSKKRLGRGTSSGLGKTSGKGHKGQNARTGGGVRPGFEGGQTPIFRRLPKVGFTNISTKTYVLLNLNDLEKLGLNDVNHQTLVAKKVLKNEKELIKILGNGTISKSVNVKVNKVSQTAKAAIEKAGGKVEVI

Crispr_ID: NZ_CP017658_2

• CRISPR_ID: NZ_CP017658_2
• CRISPR_location: 431035-431135
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP017658_2

Consensus_repeat	Method
TTTCCCTTTATAAAGGCAAAAAA	CRISPRCasFinder

spacers of NZ_CP017658_2

>2.1|431058|54|NZ_CP017658|CRISPRCasFinder
TAAGCATTTGTACCCACTAAGTGGGTACAAAGGAAGCGTAGGTGTGGCACAGAT

CRISPR arrays and Neighbor proteins around NZ_CP017658_2

CRISPR arrays

The CRISPR arrays of NZ_CP017658_2

>merge|NZ_CP017658|2|431035-431135|CRISPRCasFinder
TTTGCCTTTATAAAGGCAAATTTTAAGCATTTGTACCCACTAAGTGGGTACAAAGGAAGCGTAGGTGTGGCACAGATTTTTCCCTTTATAAAGGAAAAAAA

>NZ_CP017658|2|2|431035-431135|CRISPRCasFinder
TTTGCCTTTATAAAGGCAAATTT	TAAGCATTTGTACCCACTAAGTGGGTACAAAGGAAGCGTAGGTGTGGCACAGAT
TTTTCCCTTTATAAAGGAAAAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017658.1|WP_156768774.1|434157_434313_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406620.1|419436_420180_+|rRNA-pseudouridine-synthase	unknown	unknown	gnl|CDD|224108
NZ_CP017658.1|WP_070406621.1|420195_420798_+|deoxynucleoside-kinase	unknown	unknown	gnl|CDD|238836
NZ_CP017658.1|WP_070406635.1|442757_443003_+|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl|CDD|153087
NZ_CP017658.1|WP_083258389.1|434287_434593_+|hypothetical-protein	unknown	unknown	gnl|CDD|223847
NZ_CP017658.1|WP_156768773.1|431460_434154_+|DUF87-domain-containing-protein	unknown	unknown	gnl|CDD|225982
NZ_CP017658.1|WP_070406631.1|436390_437686_+|trigger-factor	unknown	unknown	gnl|CDD|272913
NZ_CP017658.1|WP_070406625.1|427312_428017_+|ECF-transporter-S-component	unknown	unknown	gnl|CDD|226129
NZ_CP017658.1|WP_070406623.1|421562_423203_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_156768772.1|428378_428546_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406634.1|441068_442625_+|PQQ-like-beta-propeller-repeat-protein	unknown	unknown	gnl|CDD|224437
NZ_CP017658.1|WP_070406632.1|437710_438148_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|234692
NZ_CP017658.1|WP_083258387.1|426301_426940_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406630.1|435516_436275_+|DUF3196-domain-containing-protein	unknown	unknown	gnl|CDD|371525
NZ_CP017658.1|WP_070406633.1|438394_440713_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NZ_CP017658.1|WP_070406622.1|420844_421408_-|inorganic-diphosphatase	unknown	unknown	gnl|CDD|376376
NZ_CP017658.1|WP_070406626.1|428667_429762_+|DNA-cytosine-methyltransferase	unknown	unknown	gnl|CDD|223348
NZ_CP017658.1|WP_070406624.1|423333_426246_+|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NZ_CP017658.1|WP_156768791.1|430126_430903_+|hypothetical-protein	unknown	unknown	gnl|CDD|366837
NZ_CP017658.1|WP_070406629.1|434752_435112_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP017658.1|WP_070406620.1|419436_420180_+|rRNA-pseudouridine-synthase	gnl|CDD|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.62035e-94
NZ_CP017658.1|WP_070406621.1|420195_420798_+|deoxynucleoside-kinase	gnl|CDD|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	3.72766e-57
NZ_CP017658.1|WP_083258389.1|434287_434593_+|hypothetical-protein	gnl|CDD|223847	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].	1.0504e-09
NZ_CP017658.1|WP_156768773.1|431460_434154_+|DUF87-domain-containing-protein	gnl|CDD|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	4.22456e-19
NZ_CP017658.1|WP_070406624.1|423333_426246_+|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	8.13805e-14
NZ_CP017658.1|WP_070406625.1|427312_428017_+|ECF-transporter-S-component	gnl|CDD|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	1.39829e-10
NZ_CP017658.1|WP_070406626.1|428667_429762_+|DNA-cytosine-methyltransferase	gnl|CDD|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.48177e-55
NZ_CP017658.1|WP_070406635.1|442757_443003_+|autonomous-glycyl-radical-cofactor-GrcA	gnl|CDD|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	5.59076e-43
NZ_CP017658.1|WP_070406632.1|437710_438148_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.51437e-80
NZ_CP017658.1|WP_070406622.1|420844_421408_-|inorganic-diphosphatase	gnl|CDD|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	4.31271e-79
NZ_CP017658.1|WP_070406633.1|438394_440713_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP017658.1|WP_070406634.1|441068_442625_+|PQQ-like-beta-propeller-repeat-protein	gnl|CDD|224437	COG1520, COG1520, FOG: WD40-like repeat [Function unknown].	7.82812e-05
NZ_CP017658.1|WP_070406631.1|436390_437686_+|trigger-factor	gnl|CDD|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	9.0527e-104
NZ_CP017658.1|WP_156768791.1|430126_430903_+|hypothetical-protein	gnl|CDD|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	2.50739e-05
NZ_CP017658.1|WP_070406630.1|435516_436275_+|DUF3196-domain-containing-protein	gnl|CDD|371525	pfam11428, DUF3196, Protein of unknown function (DUF3196). This proteins is the product of the gene MPN330 and is thought to involved in a cellular function that has yet to be characterized. The proteins has 11 helices and a novel fold. No function is currently known for this protein.	6.09437e-07

Protein sequences

>NZ_CP017658.1|WP_156768791.1|430126_430903_+|hypothetical-protein
MLRTSYPNSATKEVKDIFLFPFRIMFYLLLKRNFLTKNEVEFYLPYIKKPIDVIQFDDFIKRDDLSFKKYDKFNTWVIKSLVKTEIINLENNRYSINNNVKKFLEDTLSDSIESFFFDDLKDESYLEKKYNIKSTKVKRNKKIVDQILSKSGNKCFFDKKHYSFTSPKMDNYLEAHHIVPVSMKDSFSQDLDVEENMIAICPNCHKSFHYSINDNKIKIIDEVWKKKTSLSKLKITKNEILQIYINNLYLKSRSKISK
>NZ_CP017658.1|WP_070406626.1|428667_429762_+|DNA-cytosine-methyltransferase
MIKGASLFSNVGIDEFYLNDADIEIVLANELLKKRADFYSHIYPNVDMICGDITDKNIFKLLVDKFIENECDFLLATPPCQGMSIAGKMNKNDERNKLIIQVIEFIKKTRPANIIIENVTGLLKFPIWINKNQKILIKDYIINSLESIGYYVNYGILDAADYDTPHFRKRAIFLISKYKLWEFPEKKNHITVREAIGKLPSLESGESSDIKYHYAKRHNDRHILWMKHTPTGTSAYDNEIFYPQKKDGSKIKGYSTTYKRIWWDKPAPTITMGNGSISSQNNVHPGRLMKNNLYSDARVLTILELLRLVGLPDDWNIPEWASDNLIRHVLGECFPPKFALNLVMNIPKTIIEGEPSYEKRRWSV
>NZ_CP017658.1|WP_156768772.1|428378_428546_+|hypothetical-protein
MERENEEIKKIYLNLMRNKNNTLDDKKEIKIIRAKMTATMKAMKDMQTRMQKLDK
>NZ_CP017658.1|WP_070406625.1|427312_428017_+|ECF-transporter-S-component
MQARTKRLFYLDTKRVAAMAIIIALYILLSWLSKILNLAVFPVAPFLKIELTDFLMLLAVRLVGIIYASLLTISVSWLRMAYLGNGPIDVFALMLADLIFLLVFWLGDIFLRKGINRLIKNKTSKKVDYLITTSNVILAIIIVSFLMTLFNWLFIYDMYARFLNYTPEAIQWFKSILVPIIIPFNLLKFTINGAIFIAIYRAVIHLEKQFAVVKESMKLKQPFYDFDIVDEIYF
>NZ_CP017658.1|WP_083258387.1|426301_426940_+|hypothetical-protein
MSNNIYLNKWKEIKNMKKILSLLSVLTLSGATMSNIMAISNYQKEEKFSSIMENFELETPITKVTAFYFENSNENTFVWTKKLPIEAKYKFFSVKLEDNRKHWGEGADFNYFSEIFATQWPYMFKINILLVNNTEVEETIVNNSFICNRKDRFGGTLATEVINSKLILNLKYSNNLIIAKFLVRSSVKNTSLFSWVKTQAKFYFKIIISQDM
>NZ_CP017658.1|WP_070406624.1|423333_426246_+|hypothetical-protein
MKKLLSLVTMLTISTSSMTTLVAMTPNEIRNDFTKYNHLQQNNNINTNGIYIKKIKLWGLGQAGLSGDTEYKGEIGIDLVNKKIIFLGNNIPVHVYYDGKKLDSKRKLYKMVTIKNDKNKIIKQIAINGTDSMQSIIKKYKLQNGITYKENYSITVWSAEPNRTGMWQSGLARQKANSTTTKLEKSELDDFIPVLKKNNIESSEANQNLEELNQKISNLEKEKNNLVKEKEEIKNKLNLTAQEKTALEEKIASDTAENGKLKAELEQIKGNNETLVREHEAKIKALDLKIVDLTSKLDKTADEKIGLEKKAGLLEKKVAELENEKAALEEDKKNIENKLNEITKTKTALEEKIASDTAENGKLKAELEQIKGNNETLVREHEAKIKALDLKIVDLTSKLDKSTDEKAALENEIRTKTDESNNLKAELEQTKKNNEVLVTEQETKIKALDLKIVDLKDKLDNSQDADEKATLENEIRAKTDESNTLKAELEETKKNNEVLVTEQEVKIKESDLKIADLTSKLDKTADEKVALENEIKAKTDESNTLKAELEETKKNNEVLVTEQEAKIKESDLKIVDLTATLNKTADEKAALEAKTDLLKQKIIDLENEKAALEKEKQDVENNLDEITEAKDALEEIIASESEADDKFKAELEQIKAENEKLIREQEDKVNDSNSKIADLTNKLDKSVDEKTALEKKTGLLEQKAIDLENEKNKLEKDKKDTEKKLNEIVEDKKALEEKIASDTAATDKLKAELEQVKGDNEKLVTEHEAKGKELDLKIADLTSKLDKSVAEKAALEKDKENAEKKFNEIVEDKKALEEKIASDTAATDKLKAELEQVKGDNEKLVAEHEAKGKELDLKIADLTNKLDKSADEKIALEKDKENAEKKFNEIVEDKKTLNEIIVSKSAEYEKITVELEEIKKSNGELFHEKDEKIVELEEENKNLKTSNEDLLKIKEQLQKKIDELTEKLQG
>NZ_CP017658.1|WP_070406623.1|421562_423203_+|hypothetical-protein
MKKLLTILGSLTMTTVGTVNIVSCMIKPNDNNSDTNGSMQNDMATLTKIASRVSKSINDYANSGNLKDSNAYPQLNSFYNSVSEGEPSVEIPVSSSDHKAGLSIIKNGLKSVFDNINRQIKDDYSNYYVDTMPLRFEEDKDKFMLNYINLTKIAEITGTDISNLKAVQLQYRFMLNLDFKKLNQKMPFTISFLISNDVQKIGKLVNGTIQEVTKVLVNYFKNYMNVVIDKNNNFKSIYDNFQVNYIGDVKSLDDIFVTKLRQNINDDTTISEKLKQGIVFDDTGYKRLMKVVSSTITAENSGQIPKNLDLGNYQPALWAGEGVNPPGLTAENFVKAYKESLPVFNVDKENMMLAKLNVNLNYISVYGLPLSGALMINDQIYESNILISRQGLTTKLTNFGKIIVAFHNYYDIDIRKRKGENTWTNVISNSSVFHVKDALSDLKDNINSKDKILKKLLTNFKKSPKAQGLIDLNLFNIYNLIDDTPTRVGTSGYTKEKIVFDVSNGSFCLAFSFGITRMDSIFYGAYGANNGQASNHLWNAWFLIAK
>NZ_CP017658.1|WP_070406622.1|420844_421408_-|inorganic-diphosphatase
MSKNNVLPIIVEIPKGSSNKYEYDLKTGRITLDRVLYGANFYPGEYGFIENTLDWDGDPLDVISLITYPTIPGCQINVRVLGTINMIDNGEIDTKLMAVAADDPRFNHIQTLEDVPQHLRDEIENFFLQYKALQKKAVKINGWSGLDQALKEIKECQERYIEYKDLLETKGKDAVMQIWKEKGLGQA
>NZ_CP017658.1|WP_070406621.1|420195_420798_+|deoxynucleoside-kinase
MRITLAGVVGVGKSTVSKMLGKKHQYMVMDEPVEENPYLDQYYADPKDMAFKMQVYMIMARSKQLKQAKITSNIIFDRSILEDPIFVDVLYELGYMNNTDYKVYKEFYDVVVLQSLYLDENIKPELVVYLRVDPEIAMERIIKRGRASEQNVNSAYWTLLNRKYEEWYERVKDKFNFLVIDANNKTPEEIVAIISEKLTA
>NZ_CP017658.1|WP_070406620.1|419436_420180_+|rRNA-pseudouridine-synthase
MERLQKVIAARGYCSRRKAEELIVQGQVKVNNIVVTTLGTKVSKDDKIYINNKLLIDENNEKVYLMLNKPRNCVSTMSDPQHRKTVLNYIKGVPQRIYPVGRLDYDTSGLLLLTNDGEFTNIITHPSHIINKTYHVLVSGCLAKHQLHQLAAGVEIEPGIMTSSAQAKLVKYQEDKDVSILLLTIHEGRKHQVKKMIQAVGHEVLKLKRIAIGFLQLDEALKPGEWRYLKPKEIKRFFGIASQLKTK
>NZ_CP017658.1|WP_156768773.1|431460_434154_+|DUF87-domain-containing-protein
MMILFLHLRREILTSIIPENLKKAKKQITTYLSWMDLIVFTIYIPIWGSMFALTIIPFWIRGILAFIIFLSLFWTLFNSPKYNLKFYMLFLNWLKFKISKKTFSNKELSANTSLLVPYNKIIDDFIETDVLQTKKRQYIGVLEIKGYDLSTYDESEQMIKLDQIADIFRYLNLPFTLVVVNKPLNLEDNVLFYKTVKEKLKKLSEFKKITKEEFQSRCEWLDSYIENLGMNNNRSIMHYKNVKKFYMYIYAEKIQELKQQISLAEDKIFNSGLSCLPLNKYELVNSIKSIFNPFEPEWSHKNIDDNINNLKKLFRMEQIIFNKNAINANGIYYGVTGIHDYPFFPNNGWTANIAPTDTTLIWNFNNVSSEEITKDLEGAISMNETSLFQTKSSKRIGISKLGNKLEILGNMVNTITSGSETIKRGNLLFLHYGVDKKTVLNSVNRLSQLLKEEKILIDRLIYRQFEGYSSIIPKSTDSLLFELGREMPCSTIANGFMWINNSLNDKKGMLLGFNTTGDILLWDQFFRNMERKNSNLFLIGTSGDGKTTFLKKIIAYNTSLGKKVIVIDPEREYTDLCKHLNGIVIDLGSGVTGIINPLQVIPGFEEKQTTQSLISDHLQCLEIFFKYIIELNDDELRILIKCIYELYDDFKIINKKIEDIKNNEFPIFSDLLIKLESKKNENVLCKRLYEIIKWDFTGTGKYSLLWNNYSTINFNQNLFYVLDIKTLFQKNQRICAAQMCLVLRYVYNLIDINRFKEKNNLLIVIDEAHIIIDPKNPEGLMFMFRMVKMIRKYSGGIIVATQNIHDFKQTDVIERETTAVLNNSQYVGIMGLKQKDLIDVQDLYRASGGLSKQEITFISKAATGEMLFCLSDHIRHCITVEYNNFEVEKLFVKNGGE
>NZ_CP017658.1|WP_156768774.1|434157_434313_+|hypothetical-protein
MAKKVKIYVFLEQKNYNILKNTKVNDKSDATLAKKINFIIESWNENEEKKS
>NZ_CP017658.1|WP_083258389.1|434287_434593_+|hypothetical-protein
MKMKKKNLNKNDIAEFIRLEYDITKTTSRSLVNEVFNFLETQLKNGQTITVTGFGKFYVKPNLRLNNQMHGKKYNKKAKYTVKFSASSKFNKNYRKGEINE
>NZ_CP017658.1|WP_070406629.1|434752_435112_+|hypothetical-protein
MDEINNTLNFIDKRINSIFAPLIKKEIKNSELYNTKIAAELLKRIEYLDSKNTVILNWILQLSDIDINEANEPNETNKDLWLRDPDFLNELYEELKITYDKWIKKRVTKFDITFVVLWK
>NZ_CP017658.1|WP_070406630.1|435516_436275_+|DUF3196-domain-containing-protein
MSTSLNYYDELINEIEGLIDNNDYNEALIKLKTELTMPYIPQHIEKMLETLLKDVTAKMIEQQPKPNSVWSLAKISEILTHPTDEETQLLAFHYLKDQNLRKILPIIRKYFVNKKVSNFTKIYLLYLLKEQEINEVFQVQKTNGFFKLNPQEMIPYQEEKQVKLVMQLLDQWVYNDNPSLYHTCLYLLETYYYDLYPYFIVDNEIQALAVAIIFQGQVMYNEKINVEELARQFDVAVPTVQKYLLYLNNKNL
>NZ_CP017658.1|WP_070406631.1|436390_437686_+|trigger-factor
MKFKAEKIQDKGIGKWYVTIDGAEWTDCVKKAETKAANELEVPGFRKGKVPADLLKKHLTEAKILDAAHHSVVNKAYQFAFDQKSEIEPFSSPTPRVKKITKTEYILELEFDLKPEVKINKYTGFKHDHLKKEEIKIKKEDIENNIDQLRNRFAIFKPKTTAIAKGDTVIFDFEGFVDGKPFKGGKATDFTLEIGSGQFIPGFEDAMIGLKTGDQKDINVTFPADYQVEELKSTPAVFKLNIKEVKAKELPELNDELAKDINLKGIDTLAKLEDHVKNNIREQLLKQEYDHFIGHLFRLIAEDSEIALPESIIRKEANQLKHEFEQKLQAQQMDMKTYKKRTGMVEEDIFEELFKDAKNRLENGVIVDAVVQAEKITATPAECEVQYEKLGKQFGIDGKTLKETKLVSEQQVKEQVIHDKVFAFLYENNGE
>NZ_CP017658.1|WP_070406632.1|437710_438148_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKKPWTTIQIANLTPLEYEVTQNAGTEPPFQNKYWNNQEKGIYVDILSGEPLFVSSDQYDAGCGWPSFTKPIDKTVLQEKPDHSLRISRTEVRTNKTNIHLGHVFNDGPQADGGLRYCINSAALRFIPLSKMIDAGYEEYLPLIK
>NZ_CP017658.1|WP_070406633.1|438394_440713_+|endopeptidase-La
MDSKITQLKNVPVLVTRGSYIFPGFEQVLEVGRDKSILAVNTANKDFDNHIVLVSQKKPLEDDPKLSEIYRIGILAELKIRKVWEDGSLTVNFKAVDRVKILDLREGELYTADIDILKSIVKSEDKIAEKITANIKELMELQDILPEDLLDQIGDSVDGNEVVDTIAQFLPFIPVAKKQEILEQLDVEKRLQIIFDHLVNKQQANDIDNKISKKIKERVDEQQREYYLREKLKAIKDELGEFDDAADEMKTYKERLAKEPFPKNIKERIEQEITRYEALPQASSESNIIRTYIDWMMQVPWWEKTEEKNDLKFAQEVLDKYHFGLDKVKERIIEYLAVKTMTNSLKGQIICLVGPPGVGKTSLAKSIAEATGRNFVKMALGGVKDESEIRGHRKTYIGAMPGRIIQSMKRAKTTNPLFLLDEIDKMASDYRGDPASAMLEVLDPEQNATFSDHYLEENYDLSNVMFIATANYYDNIPEALIDRMEIIQLSSYTELEKFHIARDYLVPKVLSNNGLADGQLTITDDAVNEVIKHYTREAGVRQLERDLNAIARKFIVKFLNKEMTNLTVTAKIVNELLGKRRFEHTEKEKESQVGVVTGLAYTQFGGDILPIEVNSFLGKGSLVLTGKLGDVMKESASIALDYVKANSDKFGISAKFFETHDIHIHVPEGAVPKDGPSAGITLTTAIISALSNRPVSKDIGMTGEITLRGQVLPIGGLREKSISANRSGLKTILIPNKNIKDIEDIPKEVQETLKIIPVATYDEVFNNVFGTN
>NZ_CP017658.1|WP_070406634.1|441068_442625_+|PQQ-like-beta-propeller-repeat-protein
MKKMLTVLTTVVLGSNTGLLVPRTIDQVQKWDGIEDNPISAQTMPKHNNLLKDNTKQLTAGFIRSIITMINHNTVLKNLEIKVTSIEDSEVSAKSQIRSKFMSVLRNYGIDFNHLVFDFKLTDFAPPQELSAKEIVPGSINARIGIRNTMEKEFLWSNIFLVKILFPPIIQEPKAENIVINSKYNDKGFSDGLAYNDILYFVNDTRVFSYDQKSTNVELIMQLENRIITNGVAYNNNLYFAADDCYVYEYNLINHHVNKIFKANNLIKSNGIVVNNKLYFGSDDYSLYEYDAKTSVGKIVLTAESEIRHSGTVYNNKLYFGTENNDFYAYDTIEDKTTSWKRTNEESTVSDSGVLVGDAIYFTANLKNKSSIYKLDLIKKVIWTWDFVSDINTWFRMGSIMSLKNKLYLFMTLDGYEFTQIYEFNHERLIRFASVDHLSGSTAYLKGIIYNNAIYMAYSTKIYKFDVEKRTSKPVFDINGWSWIRIPEFTNRGVLLNDKIYYSTAIDGILEYDLKNNF
>NZ_CP017658.1|WP_070406635.1|442757_443003_+|autonomous-glycyl-radical-cofactor-GrcA
MAKASDSQVSNLVNMLDGYMQKGGHHLNVNVLDRDVLREAQKHPEQYPQLTIRVSGYAVNFVKLTKEQQEDVISRTFHEGM

Crispr_ID: NZ_CP017658_3

• CRISPR_ID: NZ_CP017658_3
• CRISPR_location: 431219-431317
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP017658_3

Consensus_repeat	Method
TTTCCCTTTATAAAGGCAAAAAA	CRISPRCasFinder

spacers of NZ_CP017658_3

>3.1|431242|53|NZ_CP017658|CRISPRCasFinder
TGATGCCGTAGTTTAAAAAAATGTGCCATAGTTAGTGCCACACTTTGTAAGAT

CRISPR arrays and Neighbor proteins around NZ_CP017658_3

CRISPR arrays

The CRISPR arrays of NZ_CP017658_3

>merge|NZ_CP017658|3|431219-431317|CRISPRCasFinder
TTTCCCTTTATAAAGGCAAAAAATGATGCCGTAGTTTAAAAAAATGTGCCATAGTTAGTGCCACACTTTGTAAGATTTTCCCTTTATAAAGGGAAAAAA

>NZ_CP017658|3|3|431219-431317|CRISPRCasFinder
TTTCCCTTTATAAAGGCAAAAAA	TGATGCCGTAGTTTAAAAAAATGTGCCATAGTTAGTGCCACACTTTGTAAGAT
TTTCCCTTTATAAAGGGAAAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017658.1|WP_156768774.1|434157_434313_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406620.1|419436_420180_+|rRNA-pseudouridine-synthase	unknown	unknown	gnl|CDD|224108
NZ_CP017658.1|WP_070406621.1|420195_420798_+|deoxynucleoside-kinase	unknown	unknown	gnl|CDD|238836
NZ_CP017658.1|WP_070406635.1|442757_443003_+|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl|CDD|153087
NZ_CP017658.1|WP_083258389.1|434287_434593_+|hypothetical-protein	unknown	unknown	gnl|CDD|223847
NZ_CP017658.1|WP_156768773.1|431460_434154_+|DUF87-domain-containing-protein	unknown	unknown	gnl|CDD|225982
NZ_CP017658.1|WP_070406631.1|436390_437686_+|trigger-factor	unknown	unknown	gnl|CDD|272913
NZ_CP017658.1|WP_070406625.1|427312_428017_+|ECF-transporter-S-component	unknown	unknown	gnl|CDD|226129
NZ_CP017658.1|WP_070406623.1|421562_423203_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_156768772.1|428378_428546_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406634.1|441068_442625_+|PQQ-like-beta-propeller-repeat-protein	unknown	unknown	gnl|CDD|224437
NZ_CP017658.1|WP_070406632.1|437710_438148_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|234692
NZ_CP017658.1|WP_083258387.1|426301_426940_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406630.1|435516_436275_+|DUF3196-domain-containing-protein	unknown	unknown	gnl|CDD|371525
NZ_CP017658.1|WP_070406633.1|438394_440713_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NZ_CP017658.1|WP_070406622.1|420844_421408_-|inorganic-diphosphatase	unknown	unknown	gnl|CDD|376376
NZ_CP017658.1|WP_070406626.1|428667_429762_+|DNA-cytosine-methyltransferase	unknown	unknown	gnl|CDD|223348
NZ_CP017658.1|WP_070406624.1|423333_426246_+|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NZ_CP017658.1|WP_156768791.1|430126_430903_+|hypothetical-protein	unknown	unknown	gnl|CDD|366837
NZ_CP017658.1|WP_070406629.1|434752_435112_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP017658.1|WP_070406620.1|419436_420180_+|rRNA-pseudouridine-synthase	gnl|CDD|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.62035e-94
NZ_CP017658.1|WP_070406621.1|420195_420798_+|deoxynucleoside-kinase	gnl|CDD|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	3.72766e-57
NZ_CP017658.1|WP_083258389.1|434287_434593_+|hypothetical-protein	gnl|CDD|223847	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].	1.0504e-09
NZ_CP017658.1|WP_156768773.1|431460_434154_+|DUF87-domain-containing-protein	gnl|CDD|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	4.22456e-19
NZ_CP017658.1|WP_070406624.1|423333_426246_+|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	8.13805e-14
NZ_CP017658.1|WP_070406625.1|427312_428017_+|ECF-transporter-S-component	gnl|CDD|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	1.39829e-10
NZ_CP017658.1|WP_070406626.1|428667_429762_+|DNA-cytosine-methyltransferase	gnl|CDD|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.48177e-55
NZ_CP017658.1|WP_070406635.1|442757_443003_+|autonomous-glycyl-radical-cofactor-GrcA	gnl|CDD|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	5.59076e-43
NZ_CP017658.1|WP_070406632.1|437710_438148_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.51437e-80
NZ_CP017658.1|WP_070406622.1|420844_421408_-|inorganic-diphosphatase	gnl|CDD|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	4.31271e-79
NZ_CP017658.1|WP_070406633.1|438394_440713_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP017658.1|WP_070406634.1|441068_442625_+|PQQ-like-beta-propeller-repeat-protein	gnl|CDD|224437	COG1520, COG1520, FOG: WD40-like repeat [Function unknown].	7.82812e-05
NZ_CP017658.1|WP_070406631.1|436390_437686_+|trigger-factor	gnl|CDD|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	9.0527e-104
NZ_CP017658.1|WP_156768791.1|430126_430903_+|hypothetical-protein	gnl|CDD|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	2.50739e-05
NZ_CP017658.1|WP_070406630.1|435516_436275_+|DUF3196-domain-containing-protein	gnl|CDD|371525	pfam11428, DUF3196, Protein of unknown function (DUF3196). This proteins is the product of the gene MPN330 and is thought to involved in a cellular function that has yet to be characterized. The proteins has 11 helices and a novel fold. No function is currently known for this protein.	6.09437e-07

Protein sequences

>NZ_CP017658.1|WP_156768791.1|430126_430903_+|hypothetical-protein
MLRTSYPNSATKEVKDIFLFPFRIMFYLLLKRNFLTKNEVEFYLPYIKKPIDVIQFDDFIKRDDLSFKKYDKFNTWVIKSLVKTEIINLENNRYSINNNVKKFLEDTLSDSIESFFFDDLKDESYLEKKYNIKSTKVKRNKKIVDQILSKSGNKCFFDKKHYSFTSPKMDNYLEAHHIVPVSMKDSFSQDLDVEENMIAICPNCHKSFHYSINDNKIKIIDEVWKKKTSLSKLKITKNEILQIYINNLYLKSRSKISK
>NZ_CP017658.1|WP_070406626.1|428667_429762_+|DNA-cytosine-methyltransferase
MIKGASLFSNVGIDEFYLNDADIEIVLANELLKKRADFYSHIYPNVDMICGDITDKNIFKLLVDKFIENECDFLLATPPCQGMSIAGKMNKNDERNKLIIQVIEFIKKTRPANIIIENVTGLLKFPIWINKNQKILIKDYIINSLESIGYYVNYGILDAADYDTPHFRKRAIFLISKYKLWEFPEKKNHITVREAIGKLPSLESGESSDIKYHYAKRHNDRHILWMKHTPTGTSAYDNEIFYPQKKDGSKIKGYSTTYKRIWWDKPAPTITMGNGSISSQNNVHPGRLMKNNLYSDARVLTILELLRLVGLPDDWNIPEWASDNLIRHVLGECFPPKFALNLVMNIPKTIIEGEPSYEKRRWSV
>NZ_CP017658.1|WP_156768772.1|428378_428546_+|hypothetical-protein
MERENEEIKKIYLNLMRNKNNTLDDKKEIKIIRAKMTATMKAMKDMQTRMQKLDK
>NZ_CP017658.1|WP_070406625.1|427312_428017_+|ECF-transporter-S-component
MQARTKRLFYLDTKRVAAMAIIIALYILLSWLSKILNLAVFPVAPFLKIELTDFLMLLAVRLVGIIYASLLTISVSWLRMAYLGNGPIDVFALMLADLIFLLVFWLGDIFLRKGINRLIKNKTSKKVDYLITTSNVILAIIIVSFLMTLFNWLFIYDMYARFLNYTPEAIQWFKSILVPIIIPFNLLKFTINGAIFIAIYRAVIHLEKQFAVVKESMKLKQPFYDFDIVDEIYF
>NZ_CP017658.1|WP_083258387.1|426301_426940_+|hypothetical-protein
MSNNIYLNKWKEIKNMKKILSLLSVLTLSGATMSNIMAISNYQKEEKFSSIMENFELETPITKVTAFYFENSNENTFVWTKKLPIEAKYKFFSVKLEDNRKHWGEGADFNYFSEIFATQWPYMFKINILLVNNTEVEETIVNNSFICNRKDRFGGTLATEVINSKLILNLKYSNNLIIAKFLVRSSVKNTSLFSWVKTQAKFYFKIIISQDM
>NZ_CP017658.1|WP_070406624.1|423333_426246_+|hypothetical-protein
MKKLLSLVTMLTISTSSMTTLVAMTPNEIRNDFTKYNHLQQNNNINTNGIYIKKIKLWGLGQAGLSGDTEYKGEIGIDLVNKKIIFLGNNIPVHVYYDGKKLDSKRKLYKMVTIKNDKNKIIKQIAINGTDSMQSIIKKYKLQNGITYKENYSITVWSAEPNRTGMWQSGLARQKANSTTTKLEKSELDDFIPVLKKNNIESSEANQNLEELNQKISNLEKEKNNLVKEKEEIKNKLNLTAQEKTALEEKIASDTAENGKLKAELEQIKGNNETLVREHEAKIKALDLKIVDLTSKLDKTADEKIGLEKKAGLLEKKVAELENEKAALEEDKKNIENKLNEITKTKTALEEKIASDTAENGKLKAELEQIKGNNETLVREHEAKIKALDLKIVDLTSKLDKSTDEKAALENEIRTKTDESNNLKAELEQTKKNNEVLVTEQETKIKALDLKIVDLKDKLDNSQDADEKATLENEIRAKTDESNTLKAELEETKKNNEVLVTEQEVKIKESDLKIADLTSKLDKTADEKVALENEIKAKTDESNTLKAELEETKKNNEVLVTEQEAKIKESDLKIVDLTATLNKTADEKAALEAKTDLLKQKIIDLENEKAALEKEKQDVENNLDEITEAKDALEEIIASESEADDKFKAELEQIKAENEKLIREQEDKVNDSNSKIADLTNKLDKSVDEKTALEKKTGLLEQKAIDLENEKNKLEKDKKDTEKKLNEIVEDKKALEEKIASDTAATDKLKAELEQVKGDNEKLVTEHEAKGKELDLKIADLTSKLDKSVAEKAALEKDKENAEKKFNEIVEDKKALEEKIASDTAATDKLKAELEQVKGDNEKLVAEHEAKGKELDLKIADLTNKLDKSADEKIALEKDKENAEKKFNEIVEDKKTLNEIIVSKSAEYEKITVELEEIKKSNGELFHEKDEKIVELEEENKNLKTSNEDLLKIKEQLQKKIDELTEKLQG
>NZ_CP017658.1|WP_070406623.1|421562_423203_+|hypothetical-protein
MKKLLTILGSLTMTTVGTVNIVSCMIKPNDNNSDTNGSMQNDMATLTKIASRVSKSINDYANSGNLKDSNAYPQLNSFYNSVSEGEPSVEIPVSSSDHKAGLSIIKNGLKSVFDNINRQIKDDYSNYYVDTMPLRFEEDKDKFMLNYINLTKIAEITGTDISNLKAVQLQYRFMLNLDFKKLNQKMPFTISFLISNDVQKIGKLVNGTIQEVTKVLVNYFKNYMNVVIDKNNNFKSIYDNFQVNYIGDVKSLDDIFVTKLRQNINDDTTISEKLKQGIVFDDTGYKRLMKVVSSTITAENSGQIPKNLDLGNYQPALWAGEGVNPPGLTAENFVKAYKESLPVFNVDKENMMLAKLNVNLNYISVYGLPLSGALMINDQIYESNILISRQGLTTKLTNFGKIIVAFHNYYDIDIRKRKGENTWTNVISNSSVFHVKDALSDLKDNINSKDKILKKLLTNFKKSPKAQGLIDLNLFNIYNLIDDTPTRVGTSGYTKEKIVFDVSNGSFCLAFSFGITRMDSIFYGAYGANNGQASNHLWNAWFLIAK
>NZ_CP017658.1|WP_070406622.1|420844_421408_-|inorganic-diphosphatase
MSKNNVLPIIVEIPKGSSNKYEYDLKTGRITLDRVLYGANFYPGEYGFIENTLDWDGDPLDVISLITYPTIPGCQINVRVLGTINMIDNGEIDTKLMAVAADDPRFNHIQTLEDVPQHLRDEIENFFLQYKALQKKAVKINGWSGLDQALKEIKECQERYIEYKDLLETKGKDAVMQIWKEKGLGQA
>NZ_CP017658.1|WP_070406621.1|420195_420798_+|deoxynucleoside-kinase
MRITLAGVVGVGKSTVSKMLGKKHQYMVMDEPVEENPYLDQYYADPKDMAFKMQVYMIMARSKQLKQAKITSNIIFDRSILEDPIFVDVLYELGYMNNTDYKVYKEFYDVVVLQSLYLDENIKPELVVYLRVDPEIAMERIIKRGRASEQNVNSAYWTLLNRKYEEWYERVKDKFNFLVIDANNKTPEEIVAIISEKLTA
>NZ_CP017658.1|WP_070406620.1|419436_420180_+|rRNA-pseudouridine-synthase
MERLQKVIAARGYCSRRKAEELIVQGQVKVNNIVVTTLGTKVSKDDKIYINNKLLIDENNEKVYLMLNKPRNCVSTMSDPQHRKTVLNYIKGVPQRIYPVGRLDYDTSGLLLLTNDGEFTNIITHPSHIINKTYHVLVSGCLAKHQLHQLAAGVEIEPGIMTSSAQAKLVKYQEDKDVSILLLTIHEGRKHQVKKMIQAVGHEVLKLKRIAIGFLQLDEALKPGEWRYLKPKEIKRFFGIASQLKTK
>NZ_CP017658.1|WP_156768773.1|431460_434154_+|DUF87-domain-containing-protein
MMILFLHLRREILTSIIPENLKKAKKQITTYLSWMDLIVFTIYIPIWGSMFALTIIPFWIRGILAFIIFLSLFWTLFNSPKYNLKFYMLFLNWLKFKISKKTFSNKELSANTSLLVPYNKIIDDFIETDVLQTKKRQYIGVLEIKGYDLSTYDESEQMIKLDQIADIFRYLNLPFTLVVVNKPLNLEDNVLFYKTVKEKLKKLSEFKKITKEEFQSRCEWLDSYIENLGMNNNRSIMHYKNVKKFYMYIYAEKIQELKQQISLAEDKIFNSGLSCLPLNKYELVNSIKSIFNPFEPEWSHKNIDDNINNLKKLFRMEQIIFNKNAINANGIYYGVTGIHDYPFFPNNGWTANIAPTDTTLIWNFNNVSSEEITKDLEGAISMNETSLFQTKSSKRIGISKLGNKLEILGNMVNTITSGSETIKRGNLLFLHYGVDKKTVLNSVNRLSQLLKEEKILIDRLIYRQFEGYSSIIPKSTDSLLFELGREMPCSTIANGFMWINNSLNDKKGMLLGFNTTGDILLWDQFFRNMERKNSNLFLIGTSGDGKTTFLKKIIAYNTSLGKKVIVIDPEREYTDLCKHLNGIVIDLGSGVTGIINPLQVIPGFEEKQTTQSLISDHLQCLEIFFKYIIELNDDELRILIKCIYELYDDFKIINKKIEDIKNNEFPIFSDLLIKLESKKNENVLCKRLYEIIKWDFTGTGKYSLLWNNYSTINFNQNLFYVLDIKTLFQKNQRICAAQMCLVLRYVYNLIDINRFKEKNNLLIVIDEAHIIIDPKNPEGLMFMFRMVKMIRKYSGGIIVATQNIHDFKQTDVIERETTAVLNNSQYVGIMGLKQKDLIDVQDLYRASGGLSKQEITFISKAATGEMLFCLSDHIRHCITVEYNNFEVEKLFVKNGGE
>NZ_CP017658.1|WP_156768774.1|434157_434313_+|hypothetical-protein
MAKKVKIYVFLEQKNYNILKNTKVNDKSDATLAKKINFIIESWNENEEKKS
>NZ_CP017658.1|WP_083258389.1|434287_434593_+|hypothetical-protein
MKMKKKNLNKNDIAEFIRLEYDITKTTSRSLVNEVFNFLETQLKNGQTITVTGFGKFYVKPNLRLNNQMHGKKYNKKAKYTVKFSASSKFNKNYRKGEINE
>NZ_CP017658.1|WP_070406629.1|434752_435112_+|hypothetical-protein
MDEINNTLNFIDKRINSIFAPLIKKEIKNSELYNTKIAAELLKRIEYLDSKNTVILNWILQLSDIDINEANEPNETNKDLWLRDPDFLNELYEELKITYDKWIKKRVTKFDITFVVLWK
>NZ_CP017658.1|WP_070406630.1|435516_436275_+|DUF3196-domain-containing-protein
MSTSLNYYDELINEIEGLIDNNDYNEALIKLKTELTMPYIPQHIEKMLETLLKDVTAKMIEQQPKPNSVWSLAKISEILTHPTDEETQLLAFHYLKDQNLRKILPIIRKYFVNKKVSNFTKIYLLYLLKEQEINEVFQVQKTNGFFKLNPQEMIPYQEEKQVKLVMQLLDQWVYNDNPSLYHTCLYLLETYYYDLYPYFIVDNEIQALAVAIIFQGQVMYNEKINVEELARQFDVAVPTVQKYLLYLNNKNL
>NZ_CP017658.1|WP_070406631.1|436390_437686_+|trigger-factor
MKFKAEKIQDKGIGKWYVTIDGAEWTDCVKKAETKAANELEVPGFRKGKVPADLLKKHLTEAKILDAAHHSVVNKAYQFAFDQKSEIEPFSSPTPRVKKITKTEYILELEFDLKPEVKINKYTGFKHDHLKKEEIKIKKEDIENNIDQLRNRFAIFKPKTTAIAKGDTVIFDFEGFVDGKPFKGGKATDFTLEIGSGQFIPGFEDAMIGLKTGDQKDINVTFPADYQVEELKSTPAVFKLNIKEVKAKELPELNDELAKDINLKGIDTLAKLEDHVKNNIREQLLKQEYDHFIGHLFRLIAEDSEIALPESIIRKEANQLKHEFEQKLQAQQMDMKTYKKRTGMVEEDIFEELFKDAKNRLENGVIVDAVVQAEKITATPAECEVQYEKLGKQFGIDGKTLKETKLVSEQQVKEQVIHDKVFAFLYENNGE
>NZ_CP017658.1|WP_070406632.1|437710_438148_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKKPWTTIQIANLTPLEYEVTQNAGTEPPFQNKYWNNQEKGIYVDILSGEPLFVSSDQYDAGCGWPSFTKPIDKTVLQEKPDHSLRISRTEVRTNKTNIHLGHVFNDGPQADGGLRYCINSAALRFIPLSKMIDAGYEEYLPLIK
>NZ_CP017658.1|WP_070406633.1|438394_440713_+|endopeptidase-La
MDSKITQLKNVPVLVTRGSYIFPGFEQVLEVGRDKSILAVNTANKDFDNHIVLVSQKKPLEDDPKLSEIYRIGILAELKIRKVWEDGSLTVNFKAVDRVKILDLREGELYTADIDILKSIVKSEDKIAEKITANIKELMELQDILPEDLLDQIGDSVDGNEVVDTIAQFLPFIPVAKKQEILEQLDVEKRLQIIFDHLVNKQQANDIDNKISKKIKERVDEQQREYYLREKLKAIKDELGEFDDAADEMKTYKERLAKEPFPKNIKERIEQEITRYEALPQASSESNIIRTYIDWMMQVPWWEKTEEKNDLKFAQEVLDKYHFGLDKVKERIIEYLAVKTMTNSLKGQIICLVGPPGVGKTSLAKSIAEATGRNFVKMALGGVKDESEIRGHRKTYIGAMPGRIIQSMKRAKTTNPLFLLDEIDKMASDYRGDPASAMLEVLDPEQNATFSDHYLEENYDLSNVMFIATANYYDNIPEALIDRMEIIQLSSYTELEKFHIARDYLVPKVLSNNGLADGQLTITDDAVNEVIKHYTREAGVRQLERDLNAIARKFIVKFLNKEMTNLTVTAKIVNELLGKRRFEHTEKEKESQVGVVTGLAYTQFGGDILPIEVNSFLGKGSLVLTGKLGDVMKESASIALDYVKANSDKFGISAKFFETHDIHIHVPEGAVPKDGPSAGITLTTAIISALSNRPVSKDIGMTGEITLRGQVLPIGGLREKSISANRSGLKTILIPNKNIKDIEDIPKEVQETLKIIPVATYDEVFNNVFGTN
>NZ_CP017658.1|WP_070406634.1|441068_442625_+|PQQ-like-beta-propeller-repeat-protein
MKKMLTVLTTVVLGSNTGLLVPRTIDQVQKWDGIEDNPISAQTMPKHNNLLKDNTKQLTAGFIRSIITMINHNTVLKNLEIKVTSIEDSEVSAKSQIRSKFMSVLRNYGIDFNHLVFDFKLTDFAPPQELSAKEIVPGSINARIGIRNTMEKEFLWSNIFLVKILFPPIIQEPKAENIVINSKYNDKGFSDGLAYNDILYFVNDTRVFSYDQKSTNVELIMQLENRIITNGVAYNNNLYFAADDCYVYEYNLINHHVNKIFKANNLIKSNGIVVNNKLYFGSDDYSLYEYDAKTSVGKIVLTAESEIRHSGTVYNNKLYFGTENNDFYAYDTIEDKTTSWKRTNEESTVSDSGVLVGDAIYFTANLKNKSSIYKLDLIKKVIWTWDFVSDINTWFRMGSIMSLKNKLYLFMTLDGYEFTQIYEFNHERLIRFASVDHLSGSTAYLKGIIYNNAIYMAYSTKIYKFDVEKRTSKPVFDINGWSWIRIPEFTNRGVLLNDKIYYSTAIDGILEYDLKNNF
>NZ_CP017658.1|WP_070406635.1|442757_443003_+|autonomous-glycyl-radical-cofactor-GrcA
MAKASDSQVSNLVNMLDGYMQKGGHHLNVNVLDRDVLREAQKHPEQYPQLTIRVSGYAVNFVKLTKEQQEDVISRTFHEGM

Crispr_ID: NZ_CP017658_4

• CRISPR_ID: NZ_CP017658_4
• CRISPR_location: 608532-608730
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP017658_4

Consensus_repeat	Method
CAGTTTTGCTTTCTAAATCAGTTAGTTTTTGGTCAGTATTATCTTCT	PILER-CR

spacers of NZ_CP017658_4

>4.1|608580|43|NZ_CP017658|PILER-CR
ACATCAGTTTTAGATTCTTTTATTGCATCAGCGATTTGTTCTG
>4.2|608671|30|NZ_CP017658|PILER-CR
GAAGCTACAACAGCATCTGTGATTTTTTGG

CRISPR arrays and Neighbor proteins around NZ_CP017658_4

CRISPR arrays

The CRISPR arrays of NZ_CP017658_4

>merge|NZ_CP017658|4|608532-608730|PILER-CR
TTTACTTTCTAAATCAGTTAGTTTTTGGTCAACATCAGTTTTAGATTCTTTTATTGCATCAGCGATTTGTTCTGCAGTTTTGTTTTCTAAACCAGTTAGTTTTTCATCGGTATTTTTTTCTGAAGCTACAACAGCATCTGTGATTTTTTGGTCAGTATTGCTTTCTAAATCAGTTAGTTTTTGGTTAGTATTATCTTCT

>NZ_CP017658|4|1|608532-608730|PILER-CR
TTTACTTTCTAAATCAGTTAGTTTTTGGTCAACATCAGTTTTAGATTC	TTTTATTGCATCAGCGATTTGTTCTGCAGTTTTGTTTTCTAAA
CCAGTTAGTTTTTCATCGGTATTTTTTTCTGAAGCTACAACAGCATCT	GTGATTTTTTGGTCAGTATTGCTTTCTAAA
TCAGTTAGTTTTTGGTTAGTATTATCTTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017658.1|WP_070406771.1|620815_621331_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406756.1|599686_600496_-|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl|CDD|224110
NZ_CP017658.1|WP_070406758.1|601260_601755_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406757.1|600502_601015_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406764.1|610227_610518_-|HNH-endonuclease	unknown	unknown	unknown
NZ_CP017658.1|WP_070406760.1|602563_603781_-|hypothetical-protein	unknown	unknown	gnl|CDD|367140
NZ_CP017658.1|WP_070406772.1|621388_621847_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|173926
NZ_CP017658.1|WP_070406767.1|614153_615095_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406765.1|611921_612698_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406753.1|598056_598374_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406759.1|601893_602496_-|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl|CDD|234946
NZ_CP017658.1|WP_070406770.1|617861_620672_-|cation-translocating-P-type-ATPase	unknown	unknown	gnl|CDD|319781
NZ_CP017658.1|WP_070406766.1|612806_613616_-|hypothetical-protein	unknown	unknown	gnl|CDD|225239
NZ_CP017658.1|WP_070406762.1|606963_607905_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406768.1|615586_616594_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP017658.1|WP_070406769.1|616703_617813_-|agmatine-deiminase	unknown	unknown	gnl|CDD|132423
NZ_CP017658.1|WP_071890209.1|603849_606789_-|hypothetical-protein	unknown	unknown	gnl|CDD|119360
NZ_CP017658.1|WP_070406755.1|599128_599635_-|redoxin-family-protein	unknown	unknown	gnl|CDD|239312
NZ_CP017658.1|WP_070406773.1|622003_622153_-|50S-ribosomal-protein-L33	unknown	unknown	gnl|CDD|234783
NZ_CP017658.1|WP_070406754.1|598563_598869_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP017658.1|WP_070406759.1|601893_602496_-|FMN-dependent-NADH-azoreductase	gnl|CDD|234946	PRK01355, PRK01355, azoreductase; Reviewed.	5.52118e-105
NZ_CP017658.1|WP_070406770.1|617861_620672_-|cation-translocating-P-type-ATPase	gnl|CDD|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP017658.1|WP_070406756.1|599686_600496_-|TlyA-family-RNA-methyltransferase	gnl|CDD|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	6.4438e-103
NZ_CP017658.1|WP_070406769.1|616703_617813_-|agmatine-deiminase	gnl|CDD|132423	TIGR03380, Putative_agmatine_deiminase, agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP017658.1|WP_070406773.1|622003_622153_-|50S-ribosomal-protein-L33	gnl|CDD|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	1.52441e-14
NZ_CP017658.1|WP_071890209.1|603849_606789_-|hypothetical-protein	gnl|CDD|119360	cd06543, GH18_PF-ChiA-like, PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.	8.85776e-37
NZ_CP017658.1|WP_070406760.1|602563_603781_-|hypothetical-protein	gnl|CDD|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	0.0074388
NZ_CP017658.1|WP_070406772.1|621388_621847_-|GNAT-family-N-acetyltransferase	gnl|CDD|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	1.20665e-06
NZ_CP017658.1|WP_070406766.1|612806_613616_-|hypothetical-protein	gnl|CDD|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	0.00199546
NZ_CP017658.1|WP_070406755.1|599128_599635_-|redoxin-family-protein	gnl|CDD|239312	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs.	2.56516e-39

Protein sequences

>NZ_CP017658.1|WP_070406762.1|606963_607905_-|hypothetical-protein
MNDILKRKNIKKLNNEKESWIIKTNIKLLIKNWKFWFKLIIGILPIISVIIFTTVSLTSTLWFKHHGIFPNNWSRKYDTTLRELQSWSDLSVGCMVVFRNLTLYTSYSTFIFGAFFLNSAFNTLKEGQGRYDNSNVGLLTMIVISFTLLFYNISLPITGDFKTWLPVQWMSMFLQHSLVPLLGVIYYFACYQHHNLVYHKETMLRWWGYSLATILGYFLFFTIFGYILKATHSWKPMPDMSFSGYFPYDFMEFTHPKASYTNGKLPMVAQTIIIYGVFIIITTGFYFGFYFTQNKISQKQMKYQSIKKQNILK
>NZ_CP017658.1|WP_071890209.1|603849_606789_-|hypothetical-protein
MKKILYVLGCISILSGSVSSVVACKQTKKTSDNLKENIFHKKYWSRLNNSDSIIHNDFSKLNAKQIESLMNKKAYEYTIPNPTKVLKSTLAKKILDNNIRKLEYKPYVDIGIVEDNVEYLLKDKGVNGAYWKEALASIKKRNGEQIIYNDLAHFKNKGIASKFVLGFMQNDSSSPELAPAWNATPVHDTNQSGKWYQDRLDKWQQNGLNLQEDITISFGPFANSFWHTAYLNNYTELDLANAFREITNKYQTKSFDFYFAAPYNRINSEYAEATKLLAGALKILLEQDQTYRIRLSIITGNDGLVIPTPVNTPYNGSKKQVGSDVYPLYEFTRFLGLNFTLNLVSAYLQPNDNTINDRWEVPALKNAIEATHKTWKGMLNIFSTENIATQNDQLIYNRMGVTPWIGTRAELPQYKFDAKDAIEIRKYAEAKGMADMSMFYLSRDFPSHFQANEAGNADQNPLDQNIRSGTGYESFTYSKILSGQQTIAPVEPTDKNQILQLKGALDYHHIILNNKDLDQYTNPSDNWSGGEDITIDPKEFWRARKNRYFSWDQANPNRLNGTTANHVTTKTNEISSTYFTPYIDNGLWEGNDLDGIINGKQTPDYTQQNVPNFNNKVNNFEALTLSFVQQVKNHSNYLDFSIAGIETGNDGYEYWEQNQLKQKVLDPLNKHNTFDKLRVSYGGLSTGHNPAENAWNAAYNQYYHKNESNMETAVHVLAEKFAMFNQNLATLAGGYRDPIKARQAMPMSLDFDIERSAQFTLKENRLLAKTLAFMKKQNRKWTFSLTLPVMPDGLTDICRKLVKIFIEEYKKQGLSHDDLPIINIMAMDYGDGIYNQARNRGQTNFDLAKAATISTRRNLKEIINKVYDVNINNKTLNRFLGITPMIGVNDTVEGVFTLEDAKELYNWAHAENLAFISMWSVNDDKGFLGQQPSAKTITSHGLNYLREWDFMRAFSGDWQAWVKQPARDPFRNKIKKILS
>NZ_CP017658.1|WP_070406760.1|602563_603781_-|hypothetical-protein
MINIGPVVLWQVIIFVLLILGIIIGLLVKTLGSLYFMGANVILLIILFFIAPLIIPSLANSLNNLIKPLLNNIPQLQSASIIVANWLAIIILYGTWMIGTNGILLSVYVPVLRKQFKKVQINRPINYLFGAVFGFCTMMIFSYFLTNLLSTNVFYNKNNFSQDFATMINATQNEADKYPNQFRHSPTNKMFNWLPFWQVQKSGDAITYWFWMAITLKNDTSLYDINDSISNSDDFINNIDNALNGLSDSNKNDVVNDIIGPIVDKIDKNTSGLPATTTDWTDINQAVVNWKNNNPGHQFNGPAVETMMTSTPNDENNPYYYFVKLREYGEATTANSEFSVILTNGNKFYTTLKNIYLLGKMTPNANTIQTFNTIINKYVTGMTIINPGEDDPLYPNYQQLSSWFT
>NZ_CP017658.1|WP_070406759.1|601893_602496_-|FMN-dependent-NADH-azoreductase
MSNKVLVIYGTVSPDEKSYSKALAARFIKHYQALNAEDEIIHLDLNNTAMALKTLTRDNFDSYFNAEDTDVYINQLKEVQKVIIVCPMNNFNVSGLMKNYLDHVLVANKTFSYKYSKKGDAIGLLPHLKVQILTTQGAPFGWYPWGNHTEYLKGTWEFVGATVNKPILVAGTKVPPTSALAPDELIDQYDEEIQKVVKTF
>NZ_CP017658.1|WP_070406758.1|601260_601755_+|hypothetical-protein
MLGYKNILVGVGAIALATTPALVLSNSSNIHNKYNKIEKNIGQIEKQVLQYQTFYQNSKLNNALANVKNLKDGVNEWNYYFVYSHLYLNHSLTSTIQNDLGSVGGVVAALLGAIPEIAAVAGIVAAILIAQWYIWNIPSYDQGNGVGINLIGILPNVITSVWAQ
>NZ_CP017658.1|WP_070406757.1|600502_601015_-|hypothetical-protein
MQNNKFNYYNWASNKWAKKWRMSNDVKQRLLTLKGRIHFIPLWKPAEIIVDLDNQQLIIPKNLAFLTQKYQLPQTSYYLFKYHNINNIMLECNYIISNYSTIIEAKIDQNVISLQWSLSYGAYFFKKITNYILDQDTILETYRTTKTRKQRLLFRHKNHHAFNKTKWKEE
>NZ_CP017658.1|WP_070406756.1|599686_600496_-|TlyA-family-RNA-methyltransferase
MKTRLDQLLVNHNLAPSREKAKAMILANNVLVNNVPALKAGDLVDVDSIITLRGEPLKYVSRAGEKLAKGLETFQIKVDNLICLDIGSSTGGFTDCLLQNNAKKVYALDVGTNQLAWKLRNNPQVISLEKTNFRYVTKQLFEPDQIEFACCDVSFISLDKIIPPLKEILLLDHYAFFLIKPQFESTRATVNKGKINSKEAHQIVIKKVINLALTNGFSIINLDYSPILGNKKKNIEFICLLQRTITPINHLSDLKIIEIIENAWNSLLS
>NZ_CP017658.1|WP_070406755.1|599128_599635_-|redoxin-family-protein
MAKGTMSGDVATLIPTNHIKIGDTLTFKADTVKWADFELANVSKEYKVISAVPSIDTSVCLLQTKQFNETIINKYPAVQLITISRDLPFALQRACESFINPEHILLSDTNYREFGHKTKLFFEFNNLLARSVMVLDQNNQVIYLQIVSPVSSEPNYQDIYLFLDNLVK
>NZ_CP017658.1|WP_070406754.1|598563_598869_-|hypothetical-protein
MAFENNNTAETKKRLAMPDSVFIGCEQHANECPKCAAMQESQKSILTCQMCEQPVFFCRSKPCEYKLHCTNPECIKSKHNFVFIGKNNAKTKRYQDQSFQK
>NZ_CP017658.1|WP_070406753.1|598056_598374_-|hypothetical-protein
MNIILLLQHYTLLSNTNNLEKLDNYTQTLIWGGVIIVSILFIVVFLSIHFFYWRNKNNQRHSQRFGVNRERGVLFEIRRNIFLILTSLFAISLAVGIITIIKLNV
>NZ_CP017658.1|WP_070406764.1|610227_610518_-|HNH-endonuclease
MKENNHKWGRYERNSIWKSYAMNKVQKYFEHKDYSKYDLFQEAPCKYCGQLMLKAQYQDIQPNKDYSWVVDYIDTNFTNNTLENLQPAHPWCCNKK
>NZ_CP017658.1|WP_070406765.1|611921_612698_-|hypothetical-protein
MITFEHIWEFLATYWEAFISISSFIAVILFGIISFQVQMKNYQRKLERLIKRDNYRFKKLIIKTGLNNDSIIFKSYLRAKMVFVLNNENGKEQEPNYYISFREYKLIKLIFRNINHHLVKFNYILKLIRQYNIAEQNIKISKKSKLSESLDLYPKSLENKTLLQSNQKDYFLNSLYDYAGNLMVQHQITEETIWDQYNFFLKHDRDDMIIIVIVKANKNEEENITKESENKIFFSINTAETKKVIKTEFKNMKLYNYL
>NZ_CP017658.1|WP_070406766.1|612806_613616_-|hypothetical-protein
MKKQHFFLINWKRWGLKIFFFLLGLYIFTFGLSLYLPTAVGVMHLDFTIYAVLMVWKGIYPDGTLDTTVSNGTVHWLVLGIYFAILMLFSFSFATIGAYRKYQITKEKKEFNLLWTVLIMDLIIVFLEPFMLQFHELYLTPTIANKIKNSPYTIRMWIFLAGFLLNAIGDAIWLKSNLFLGPYNSICINFQKMSNWKFVNARIFLDFCIILPGIIITLSTNTISWDLKGKFFLNYVNLGTIAFIFAFGPIVHLLLNQFDKWLPHKNKLN
>NZ_CP017658.1|WP_070406767.1|614153_615095_-|hypothetical-protein
MKKILNILSAITLASVGTSGVTACKDNVIAKKDKNNEENKSEEKKVVKKINDISLAQDEINKSFWQYIAVNNNSIYYYENSILYISDKINVENFYYTYKRIINDAIGWDIRYDVTDFEMSEILKADKVTIATKEDFHSGGTFFVKVNGIGRLTGTVLVAFTIEKLQKIQLDVSEIGTMLNQTNNFNMVYHYYSKQDIDQKLDLELIKQKWNYYLNNEEWIANLLKASISPESAINSNLTIGRILKADKITIATKKDIQKEGIFFVEFNGKKPLKGTVLIKFEMKLYEEPPYLTRDMKYSYLIINREEIDNKKS
>NZ_CP017658.1|WP_070406768.1|615586_616594_-|hypothetical-protein
MTITKGNLKKTNLKQRLTTKQDKLFDKKINPFTLEKLIRHNHHGKVKPSNKMIEEYYARREHEIQAAKIYREKANRGGIYNFRMSKYDNIFKTTKQQQSPQKPKLTFGMKQQGKSLTFNRFTDEYLTKKNDLIIKTTDDRPVIDLFDENNIEKQPPIIVYDSVKGIYVMQNPKIKQITTAKNNTNIAQNNSTLKDTKIYDDAPRQRYAKTSKHGGYVANRIDPNKKPTFLSQIKDQPEELSEFKKHNEDEKSLSFQNNVMLPTTNLQSVSKKPVKFSKKQFLKQLETKHYQKKSYAPNYYQTIYSSKKSFRNFLRALLQPLLFYKLTNKTKRWNK
>NZ_CP017658.1|WP_070406769.1|616703_617813_-|agmatine-deiminase
MSKLLTTTPKQDGFYMPIESTQHRSTWMLWPHMKDNWHDDRKPARATFAKIANAISKYEPVKMIINHEDYTEARAMLEENVTLVEIKHLDSWARDIGPLYVINDQGVRRAVNFHFNGWGMQNVPEMNTPDFKWDYTIDDQVSKIISENSDVDYYQVPMVLEGGSIHQDGDGTIYTTEECLLNPNRNPHLTKTEIEEYLKQYLNADKVIWIPRGVYNDETSGHVDNLMHVIAPGHVILTWTDDQNDPQYERSLEALTILENSTDAKGRKIKVTKLHQPSSLHVSESEAANREYSIRFATRIAGFRMPASYANFHIINGAILVPAFDDSIWDQNAVDVLQQCFPDRKIIPINTREVLLGGGNIHCITQQEL
>NZ_CP017658.1|WP_070406770.1|617861_620672_-|cation-translocating-P-type-ATPase
MEEYISQDNNNLESSLQTNFEIGLSSDEVTIRQKQYGKNELPKGKVTPWYVIFGKALIEPLQLILIAAAVISVIAPMVGNNWKLRGGYFVDFTVIGAIVILDAILETVQTVKARKSMAALKSLSKPKAVVIRNDLQQEIPAHELTVGDIVVLEAGKYVPAELRIIEQSDVFIDEAILTGESVPVHKTDKPIEATTILAEMKNIAFMSTFITAGRAVGVVIKVGQQTEIGKIATTINETEESPTNLEKKLTKFSYWIAGLSFIIAIMIFIALYFSGNKSGWTNYLMVAITLAIGVIPESLAAVVSITLSFSTKRMAKQNVIVKKLASMETLGSVNVICTDKTGTLTENKMTVKKVIMDNSVINAEAYQTVNHDQHQDLFLKALVLCNDSVTEDKERIGDPTELALVDYAELFAYDEQDSRDKWERIDEVPFDSERKLMSTLNIIDGVSTTFTKGALDSLLQYCDRIMIKNQILTLTDEHKAELLKLADDLSTQALRVLAFAYNTNFDDEQDPEALETNLIFLGAVGMIDPVRCSAIEAVKKAHAAGIEVVMITGDHATTALAIAKELNLAYSEYEVISSEQLNEMSDKQLIRIIDKIKVFARVNPEHKVRIVNILQQKKYLVSMTGDGVNDAPSLVKADIGVAMGITGTDVAKQAADVILTDDNFETIIKGVNEGRNVYQKIRRAISFVIGVNLANVLSIFILSLINHVSPVEATDILWMNLVIESILAICIGMGDNDDTLMRIKPLQGKNSLFRNIWGPTLRITILTSAVCIGAYYFGMSFVPAEAYQPYGYQTVFDFLRSNDPMITVEMKLQISDFGRTSMFLVLTCAPSMLVNTVTLSDWKIKSQFKSIINRPLTCAAIGAVLLNIIMLFIPWINNKVLNLNDLEVYSKSNWYFVPACLAMAMIPVTVIIVTDALYFWWHHNLKHYFQQIGQKK
>NZ_CP017658.1|WP_070406771.1|620815_621331_-|hypothetical-protein
MLINGNLDAKTLKTFNFLNSLKLNFLSIERILKTKTELTFDQKTVILGLLRKQHNMKANPYRHYQPAKQQKPHRIAKQKIQQTTKKITKTVEKQTTAKKNKKPVLITNIRKNQSFFRQNNLLELTKQKIKALRNAAHTYNRMGQGAIKWQNPYYTSFRLKQEDSNKRHKNL
>NZ_CP017658.1|WP_070406772.1|621388_621847_-|GNAT-family-N-acetyltransferase
MIRRATILDQKQIEELGQKVLSKISIEDYSLLQQTAILQRWQNEDFCKVLSEEEGYVIVFDNKILAFGSYHSEQNRITQLYVDPEYQGWYFGKKMLQQLETVAQANGFLDLTVDAYLPTVAFFQKHHYSAIKKNLHLSQNEEITTFFMKKYF
>NZ_CP017658.1|WP_070406773.1|622003_622153_-|50S-ribosomal-protein-L33
MREGIILRCEQCKEENYIAKRDKKKQQEKLEVKKYCSKCNQHTLHKEKK

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	NZ_CP017658.1	609454-609483	0	1.0

1. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to position: 609454-609483, mismatch: 0, identity: 1.0

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
gaagctacaacagcatctgtgattttttgg	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	MT446398	UNVERIFIED: Escherichia virus TH24, complete genome	20089-20118	6	0.8
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	MT446406	UNVERIFIED: Escherichia virus TH33, complete genome	33075-33104	6	0.8
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	MT446402	UNVERIFIED: Escherichia virus TH28, complete genome	41207-41236	6	0.8
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	MT446397	UNVERIFIED: Escherichia virus TH23, complete genome	7729-7758	6	0.8
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	175366-175395	7	0.767
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	KP658157	Klebsiella phage 1513, complete genome	44871-44900	7	0.767
NZ_CP017658_4	4.2|608671|30|NZ_CP017658|PILER-CR	608671-608700	30	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	252159-252188	8	0.733

1. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to MT446398 (UNVERIFIED: Escherichia virus TH24, complete genome) position: , mismatch: 6, identity: 0.8

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
gaagctacaactgcatctgtaattttcact	Protospacer
*********** ********.*****.   

2. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to MT446406 (UNVERIFIED: Escherichia virus TH33, complete genome) position: , mismatch: 6, identity: 0.8

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
gaagctacaactgcatctgtaattttcact	Protospacer
*********** ********.*****.   

3. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to MT446402 (UNVERIFIED: Escherichia virus TH28, complete genome) position: , mismatch: 6, identity: 0.8

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
gaagctacaactgcatctgtaattttcact	Protospacer
*********** ********.*****.   

4. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to MT446397 (UNVERIFIED: Escherichia virus TH23, complete genome) position: , mismatch: 6, identity: 0.8

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
gaagctacaactgcatctgtaattttcact	Protospacer
*********** ********.*****.   

5. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.767

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
aattctacaagagcatctttgattttttca	Protospacer
.*  ****** ******* ********* .

6. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to KP658157 (Klebsiella phage 1513, complete genome) position: , mismatch: 7, identity: 0.767

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
ctaatgacaacggcatctgtgattttttcg	Protospacer
  *.. *****.**************** *

7. spacer 4.2|608671|30|NZ_CP017658|PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaagctacaacagcatctgtgattttttgg	CRISPR spacer
atttctacaagagcatctttgattttttca	Protospacer
.   ****** ******* ********* .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	414544 : 421408	9	Staphylococcus_phage(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP017658|414544:421408|DBSCAN-SWA
AATGGAACAATATCTTAAGATGGCACGGTTTATTTTAGAACACGGTCAAGAAAAAGATGATCGAACAAATACTGGTACAATTTCTTATTTTGGTTATCAAATGCGTTTTAATTTACAAGAAGGTTTTCCGTTATTAACAACGAAAAAGATTCATTTTAAATCAGTTGTTTATGAATTATTATGATTCATTAAAGGTGATACTAATATTAAATATTTAGTGGATAATAATGTTCGAATTTGAAATGAATGACCGTACGAGAAATATAAAGCATCGTCACAATATCAAAATGAATCATTAAATGAATTTGTGGAGAAAATTAAAACTGATGCTACTTTTGCCGCTGCTTTTGGTAATTTGGGACCTGTATATGGGAAACAATGACGAAATTTTAATGGTGTTGATCAGTTAGCAATTTTGTTAGATAATTTAAAAACTAATCCATATTCACGTCGCCATATTGTTAGTGCTTGGAATCCGGCTGAAATTGAAAAAATGGCGTTGCCGCCATGTCATACTTTAATGCAATTTTATGTTTCAAAAGATAATAAATTAAGTTGTCAATTGTATCAACGTAGTGCTGATGTTTTTTTAGGTGTTCCTTTTAATATTGCAAGTTATTCGTTGTTAATCCATTTAATTGCGCAAGTTTCAGGATTAGAAGTTGGTGATTTTGTTTACACATTAGGAGATTGCCATATTTATAAAAACCATTTTGCACAAGTTAATGAACAGTTAACAAGAACACCACGCAAATTACCAACATTAAAATTAAATCCAACAATTAATTCTTTATTTGATTTTGTTTATGAGGATATTACCCTTGAAAATTATGACCCAGCCTCATTAATTAAAGGAGTTGTTGCTGTCTAATGATTAAGTTATTATGAGCAATGGATGAGAATAATTTAATTGGGAAAAATAATCATTTACCGTGACATTTAAAAGAGGAGTTACAACATTTTAAAAGAACAACAGTTGGACAAACAATATTATTTGGTCGTTTAACTTATGAAGGAATTGGTGGGCCACTCCCAAATCGAAAAATATTAGTTTTAACAACGAAAAAAGATTATATTATTAATCATCCTGATGTTAAAGTAGTAACAAACTTGAATGATATTATTAACACTTATCAACAGAATTCAACAGATGATATTTATATTTGTGGAGGAAAAAAAATTTATGAAGCAACATTACCATATGCTGATGAATTAATTATTAGTTATATCAAAGGAAAATATGAGGGGGATACTTATTTTCCAGCATTTGATTTAACACAATTTATCTTAATTAAAACCACTGAATTAGAGCAATTTGTAATAAAATATTATAAGAGAAAGGAACAAAATTAGTATGTTAAATATTTGAAAAATTATTCTTACATGACCACGATTTTTACGAACAATTACGAAAGCAAAAAGCATTAGTAAAAAAATTAAACGAGATCCAAATATTATTTCTGAAGAATATCGTTACCATTGGTTGCAAAAACGAGCACGTTATATGTTATGAGTATACGATGTTAAAATAATTGTTCATGATCGTGACAATTGAATTGATAAAGGTTGTTTAATGGTGGCTAATCATCAATCAAATGTTGATCCAGCCTTATTATTTGTTTTAAATGATTTTAATAAAACAGCACCATGTGCTTTTATTGCCAAAAAAGAATTAGCAAATGATAAGACATTTAAAAACTTTTTAACATTAATTGATGTTTTATTTTTAGACCGCGATAATCCACGGCAAGCTTTAGAATTAATGAAAGAAGCTAATGATTTAATTCGTGTACCAAGAACAATGGTTGTTTTTCCAGAAGGAACTCGTAGTCGTAATCAAGAAATGGGAGAATTTCATGCGGGTAGTTTTAAGATTGCTCAGAAAGCACATGCACCAATTATTCCGGTTTCAATAATTAATTCTCATCCAATTTTTAACAAGGAATATAAAAAGAAGGGGAAAAAATATGTTCATATTGTTTTCCATAAGCCAATCAAACCAGATACTTTTATGACAAAGCCAACAGAGTTAATTGCGAATAATGTAAAACAAATTATTCAAAAGGGGATTGAACAATACCGTGATGTTGATCACAAAAAAGCTTATTTAGAATATAAAGCTTCATTAAAGAAAAAAAACACGTAAAGTAAAAGGAACAAGTAATTATGAATATTTTAGCTTTAATTGATAAAAAGAAACATGGTCAGGAATTAACTCGTGAAGAAATTAATTTTATTGTCGAAGGTTATACGACAGGATTAATTCCCGATTATCAAATGTCAGCTTTTTTAATGACAATTTATTTTCAAACGATGTCTATTTCTGAAATTTCATTTTTAACAGAAGCGATGATTAACTCGGGTGAAATTTATGATTTATCATCAATTTCAGGGTTTAAGGTTGATAAGCATTCTTCTGGTGGGGTTGGTGATAAAGTTAGTTTAATTTATGCACCATTAGTTGCTGCTTTTGGTTTGAAAGTTGCCAAAATGTCTGGTCGTGGTTTGGGACAAACTGGTGGGACAATTGATAAATTAGAGAGTATACCAGGTTTTAGAGTTGAAATTTCTTTTTCTGAATTTGTTAAAATTATTAATCAAACAAATTTATCAATTATGTCACAATCTACTAATATTGTTCCAGCTGATAAGAAAATTTATGCTTTACGCGATGTTACAGCAACAGTTGATTCTTTGCCGTTAGTTGCGGCAAGTATTATGTGTAAAAAAATTGCAACAGGAAGTGATGGCATTGTCTTAGATGTTAAGTGCGGAAGTGGGGCTTTTATGAAAACAATTTCAGAAGCACGAAAATTAGCTCAAATTATGGTTGAATTAGGAATTAAATTTAATAAGAAAATTGCAGCAGAGATCACTAATATGTCACAACCATTAGGACGTGCAATTGGTAATGCAATTGAAATCTATGAAGTTTTACAAACATTAAAAGGGAGAGGACCTGATGATTTAAACTATATTGTGTGTGAATCAGCAGCCTTAAGTTTATGCCAAGCTGGTTTGTTTCCGGATTTAGCATCAGCTGTTACTGCTTGTCAAGAAAAAATGCAAACTGAAAAACCACTAAATTATTTTCGTGCTTTTATTAAGGCACAAGGTGGTGATTTAAGTTTTATTGATAATGATTTACCTTTAAAGGATATTTTAAAAGTAAAAAATATTATTGAAATTAAGGCAGACCAAGCTGGATATATGGAAATTATTGATACAAATGAATTGGGTTTATTAGCCGTTCGTTTGGGAGCGGGTCGAACAACAAAAGATGAAGAAATTGATTATCATGCTGGGATTTATCTTAATAAAAAAACAGGTGAACAAGTTGTCGCTGGTGATGTTGTAATGACTTTGTATACTAACCGTTATGTTACTGACCCAGTTTATGAATGAGCAAAACAAACTTTTAAAATTGTCGCCACAAAACCACGTGAGCAAGAATTAATTTATGAAATAATTCAGTAAAAAAGTGATTTTAAATTAATCACTTTTTTTGTTATAACATCTTTAATTTTTTTAAAATATCGTTATTATTAATTAAGAGTATAAAAAACAGGAGAAAGAGAATGCTAAATTTTTCACGTTATGAAGTAAAACTTGATAATTTTTCAGGACCATTAGATTTACTACTGCACTTAGTAAAAGAAAAGGAAATGGACCTTTTTAATATTAAGTTAACAGAAATTACTGATCAATTTTTGGATTATATTCGTAAAATGGAACAATTGAACATTGAAATTGCATCAGAATATTTAACTATGGCAAGTTATTTGGTTGAAACAAAAACAAAGTTAGTCTTGCCAAAAGAAGAAGTTGAAATTGATGATAACTATGAAAAAGATTCGCGTAATGAATTAATTAATCGTTTATTAGAATACAAAAAAATCAAGGAAGTTAGTCAGTATTTTAAGGACCAACATCAAGAAGGAATTCAATATTTATCAAAACCACGAACAATTATTAAGGGCCATTCAATGAAAGAAGAAGATTTACCATTGTCACCAAAAATTAATATTGATAAATTAACAAATAGTTTTTTAAAAATGTTAGAGCGAATTAATGCAACAAAACCATTAGAATCAAATGTTGTTATTACTGAGGTTTCGCCAGAGGAAATGGCAGATCGTATTATGTTTTTCCTTTCAAATGAAGACAAAGAGTGGTTATTAGAAGATTTATTAGGTAATTTTGAAATATCATTACAAGTTTTTGTTGCTTGTTTTATTGCTTTATTAGATTTAGCTCGTCATCAAAAAATTGAGATTGAACAGTATCAACATTTAGAAGCAATTTATATTCGAAAATATATGAAAAAAGAAGGGAATTTAACTTAATGAATTTAAATGAAAAAATAGCCTTATTAGAAGGCTTATTATTTATTAGCGGTGATGAAGGAATTAGTTTAAAAGAAATTGCCCATATTCTTGAAATTTCCGAAGCAGAGGTTGATGAATTGTTACTAAACTTAAAAACAGAATATCAGACAAATAAGATGCGGGGACTAACGATTACAGCATTCGCCGATAAATATCGTTTAACAACGAAAAAAGAATACTATAGTTTTTATTTAAAGTTGGCAAATAATAAGATTGAAGCACGTTTATCACAAGCAGCATTAGAAACATTAGCAATTATTGCTTACCGGGGACCAATTAGTAAACCAGAAATTGAAGAATTACGGGGGGTTAATTCTGATAATGTGATTCAAAAATTACGAGCACGAGAATTGATTGAAGAAGCTGGGAAAAGTGAATTACCAGGAAAACCAATGACTTATCAAATTACAAATGAGTTTTTAAAAGTTTTTAATTTAACTTCATTAGCAGATTTACCACAAATTAAAGAAGCAATTATTGATAATGATCAGGACTTATTTAAATAATGGAACGATTACAAAAAGTTATTGCTGCAAGAGGTTATTGTTCTCGTCGTAAGGCAGAAGAGTTAATTGTCCAAGGGCAAGTGAAGGTCAACAATATTGTTGTGACAACATTAGGAACAAAAGTTAGCAAGGATGATAAAATTTATATTAATAACAAGCTTCTTATTGATGAAAATAATGAGAAGGTTTATTTAATGTTAAATAAACCCCGAAATTGTGTTTCGACAATGTCTGATCCTCAACATCGTAAAACTGTTTTAAATTATATTAAGGGTGTTCCCCAACGAATTTATCCTGTTGGCCGATTAGACTATGATACTAGTGGTTTATTACTATTGACTAATGATGGTGAATTTACTAATATTATTACACACCCAAGTCATATTATTAATAAGACCTATCATGTTTTAGTTTCTGGTTGTCTTGCAAAACACCAGTTGCACCAATTAGCAGCTGGGGTGGAAATTGAACCAGGTATTATGACAAGTTCTGCTCAAGCAAAATTAGTAAAATACCAAGAAGATAAAGATGTTTCAATTTTGTTATTAACAATTCATGAAGGAAGAAAACATCAAGTTAAAAAAATGATTCAAGCAGTTGGCCATGAAGTTCTTAAATTAAAACGAATTGCTATTGGTTTTTTACAATTAGATGAAGCTTTAAAACCAGGCGAGTGGCGCTACTTAAAACCAAAAGAAATTAAACGTTTTTTTGGGATAGCATCACAATTAAAAACAAAATAAAGGAGAGAAAACACAATGCGAATTACCTTAGCTGGAGTTGTTGGAGTTGGAAAATCAACTGTTAGTAAAATGTTAGGAAAAAAACATCAATATATGGTGATGGATGAGCCAGTTGAAGAAAATCCATATTTAGATCAATATTACGCAGACCCCAAGGATATGGCTTTTAAAATGCAAGTGTATATGATAATGGCGCGCAGCAAACAATTAAAACAAGCAAAAATAACATCAAATATTATTTTTGATCGAAGTATTCTAGAAGACCCAATTTTTGTTGATGTTTTATATGAATTAGGATATATGAATAATACAGATTATAAAGTATATAAAGAATTTTATGATGTTGTTGTTTTACAAAGTTTATACTTGGATGAAAATATTAAACCAGAATTAGTGGTTTATTTACGAGTTGACCCTGAAATAGCAATGGAACGAATTATTAAAAGGGGACGAGCTAGTGAACAAAATGTTAACAGTGCTTATTGAACATTGTTAAATCGCAAATATGAGGAATGATATGAACGGGTAAAAGATAAGTTTAATTTTTTGGTAATTGATGCAAACAATAAAACGCCAGAAGAAATTGTGGCAATAATTTCAGAAAAGTTAACTGCTTAATTTGATAATAAAAAAAATACTATTTTTGATAATAGTATTTTTTTTATTAGGCTTGCCCCAATCCTTTTTCTTTTCAAATTTGCATTACAGCATCTTTTCCTTTTGTTTCTAAGAGGTCTTTATATTCAATGTATCGTTCTTGACATTCTTTAATTTCTTTTAAAGCCTGGTCTAAACCACTTCACCCATTAATTTTAACTGCTTTTTTTTGCAATGCTTTATATTGTAAAAAGAAGTTTTCAATTTCATCGCGAAGATGTTGTGGTACATCTTCTAATGTTTGAATATGGTTAAAACGAGGGTCATCAGCAGCAACTGCCATTAATTTGGTATCAATTTCACCATTATCAATCATATTAATCGTTCCCAAAACGCGAACATTAATTTGACATCCTGGAATTGTTGGATATGTAATTAGCGAAATAACATCTAGTGGATCACCATCTCAATCTAAAGTATTCTCAATAAAACCATATTCACCAGGATAAAAATTAGCTCCATATAAAACACGATCTAAGGTAATGCGCCCAGTTTTAAGATCGTATTCATATTTATTACTGCTTCCTTTTGGAATTTCGACTATAATTGGTAAAACATTATTTTTACTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP017658|414544:421408|414544_415414_+|WP_070406614.1|DBSCAN-SWA
MEQYLKMARFILEHGQEKDDRTNTGTISYFGYQMRFNLQEGFPLLTTKKIHFKSVVYELLWFIKGDTNIKYLVDNNVRIWNEWPYEKYKASSQYQNESLNEFVEKIKTDATFAAAFGNLGPVYGKQWRNFNGVDQLAILLDNLKTNPYSRRHIVSAWNPAEIEKMALPPCHTLMQFYVSKDNKLSCQLYQRSADVFLGVPFNIASYSLLIHLIAQVSGLEVGDFVYTLGDCHIYKNHFAQVNEQLTRTPRKLPTLKLNPTINSLFDFVYEDITLENYDPASLIKGVVAV
>NZ_CP017658|414544:421408|415897_416689_+|WP_070406616.1|DBSCAN-SWA
MLNIWKIILTWPRFLRTITKAKSISKKIKRDPNIISEEYRYHWLQKRARYMLWVYDVKIIVHDRDNWIDKGCLMVANHQSNVDPALLFVLNDFNKTAPCAFIAKKELANDKTFKNFLTLIDVLFLDRDNPRQALELMKEANDLIRVPRTMVVFPEGTRSRNQEMGEFHAGSFKIAQKAHAPIIPVSIINSHPIFNKEYKKKGKKYVHIVFHKPIKPDTFMTKPTELIANNVKQIIQKGIEQYRDVDHKKAYLEYKASLKKKNT
>NZ_CP017658|414544:421408|415413_415896_+|WP_070406615.1|DBSCAN-SWA
MIKLLWAMDENNLIGKNNHLPWHLKEELQHFKRTTVGQTILFGRLTYEGIGGPLPNRKILVLTTKKDYIINHPDVKVVTNLNDIINTYQQNSTDDIYICGGKKIYEATLPYADELIISYIKGKYEGDTYFPAFDLTQFILIKTTELEQFVIKYYKRKEQN
>NZ_CP017658|414544:421408|419436_420180_+|WP_070406620.1|DBSCAN-SWA
MERLQKVIAARGYCSRRKAEELIVQGQVKVNNIVVTTLGTKVSKDDKIYINNKLLIDENNEKVYLMLNKPRNCVSTMSDPQHRKTVLNYIKGVPQRIYPVGRLDYDTSGLLLLTNDGEFTNIITHPSHIINKTYHVLVSGCLAKHQLHQLAAGVEIEPGIMTSSAQAKLVKYQEDKDVSILLLTIHEGRKHQVKKMIQAVGHEVLKLKRIAIGFLQLDEALKPGEWRYLKPKEIKRFFGIASQLKTK
>NZ_CP017658|414544:421408|416709_418020_+|WP_070406617.1|DBSCAN-SWA
MNILALIDKKKHGQELTREEINFIVEGYTTGLIPDYQMSAFLMTIYFQTMSISEISFLTEAMINSGEIYDLSSISGFKVDKHSSGGVGDKVSLIYAPLVAAFGLKVAKMSGRGLGQTGGTIDKLESIPGFRVEISFSEFVKIINQTNLSIMSQSTNIVPADKKIYALRDVTATVDSLPLVAASIMCKKIATGSDGIVLDVKCGSGAFMKTISEARKLAQIMVELGIKFNKKIAAEITNMSQPLGRAIGNAIEIYEVLQTLKGRGPDDLNYIVCESAALSLCQAGLFPDLASAVTACQEKMQTEKPLNYFRAFIKAQGGDLSFIDNDLPLKDILKVKNIIEIKADQAGYMEIIDTNELGLLAVRLGAGRTTKDEEIDYHAGIYLNKKTGEQVVAGDVVMTLYTNRYVTDPVYEWAKQTFKIVATKPREQELIYEIIQ
>NZ_CP017658|414544:421408|418888_419437_+|WP_070406619.1|DBSCAN-SWA
MNLNEKIALLEGLLFISGDEGISLKEIAHILEISEAEVDELLLNLKTEYQTNKMRGLTITAFADKYRLTTKKEYYSFYLKLANNKIEARLSQAALETLAIIAYRGPISKPEIEELRGVNSDNVIQKLRARELIEEAGKSELPGKPMTYQITNEFLKVFNLTSLADLPQIKEAIIDNDQDLFK
>NZ_CP017658|414544:421408|420844_421408_-|WP_070406622.1|DBSCAN-SWA
MSKNNVLPIIVEIPKGSSNKYEYDLKTGRITLDRVLYGANFYPGEYGFIENTLDWDGDPLDVISLITYPTIPGCQINVRVLGTINMIDNGEIDTKLMAVAADDPRFNHIQTLEDVPQHLRDEIENFFLQYKALQKKAVKINGWSGLDQALKEIKECQERYIEYKDLLETKGKDAVMQIWKEKGLGQA
>NZ_CP017658|414544:421408|418121_418889_+|WP_070406618.1|DBSCAN-SWA
MLNFSRYEVKLDNFSGPLDLLLHLVKEKEMDLFNIKLTEITDQFLDYIRKMEQLNIEIASEYLTMASYLVETKTKLVLPKEEVEIDDNYEKDSRNELINRLLEYKKIKEVSQYFKDQHQEGIQYLSKPRTIIKGHSMKEEDLPLSPKINIDKLTNSFLKMLERINATKPLESNVVITEVSPEEMADRIMFFLSNEDKEWLLEDLLGNFEISLQVFVACFIALLDLARHQKIEIEQYQHLEAIYIRKYMKKEGNLT
>NZ_CP017658|414544:421408|420195_420798_+|WP_070406621.1|DBSCAN-SWA
MRITLAGVVGVGKSTVSKMLGKKHQYMVMDEPVEENPYLDQYYADPKDMAFKMQVYMIMARSKQLKQAKITSNIIFDRSILEDPIFVDVLYELGYMNNTDYKVYKEFYDVVVLQSLYLDENIKPELVVYLRVDPEIAMERIIKRGRASEQNVNSAYWTLLNRKYEEWYERVKDKFNFLVIDANNKTPEEIVAIISEKLTA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070406614.1|414544_415414_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.9e-90	54.5
WP_070406615.1|415413_415896_+	dihydrofolate reductase	G3MBI7	Bacillus_virus	1.9e-23	39.7
WP_070406616.1|415897_416689_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_070406617.1|416709_418020_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.9e-106	49.1
WP_070406618.1|418121_418889_+	chromosome partitioning protein	NA	NA	NA	NA
WP_070406619.1|418888_419437_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.8e-15	33.1
WP_070406620.1|419436_420180_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_070406621.1|420195_420798_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	1.5e-17	34.9
WP_070406622.1|420844_421408_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.5e-23	40.4