CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017483	Stenotrophomonas sp. LM091 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,Cas9_archaeal,DinG,WYL	2	3	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017483_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017483_1

674965-675203

Orphan

Consensus_repeat	Method
CTCCGGTGGCTGCNCCGNCGGCT	CRT

4 spacers

The CRISPR arrays of NZ_CP017483_1

>merge|NZ_CP017483|1|674965-675203|CRT
CCCCGGCCGCTGCGCAGCCGGCTGCACCGGTGGAAGCACCGCGTGTGGTTGAACCGGTGGCTGCTCCGGTGGCTCCGGCTCCGGTGGCTGCTCCGGCGGCTCCGGTTCCGGCGGCTCCGGCTCCGGTGGCTGCTCCGGCGGCTCCGGTTCCGGCAGCTCCGGCCCCGGTCGCTGCTCCGGTGGCTCCGGCCCCGGTGGTTGCTCCGGCGGCTCCGGCTCCGGTGGCTGCTCCGGCAGCT

>NZ_CP017483|1|1|674965-675203|CRT
CCCCGGCCGCTGCGCAGCCGGCT	GCACCGGTGGAAGCACCGCGTGTGGTTGAACCGGTGGCTGCTCCGGTGGCTCCGG
CTCCGGTGGCTGCTCCGGCGGCT	CCGGTTCCGGCGGCTCCGG
CTCCGGTGGCTGCTCCGGCGGCT	CCGGTTCCGGCAGCTCCGGCCCCGGTCGCTG
CTCCGGTGGCTCCGGCCCCGGTG	GTTGCTCCGGCGGCTCCGG
CTCCGGTGGCTGCTCCGGCAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017483.1\|WP_019182888.1\|669072_669492_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP017483.1\|WP_019182879.1\|682940_684554_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227662
NZ_CP017483.1\|WP_019182882.1\|679879_680716_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP017483.1\|WP_070425514.1\|689382_689682_-\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183103
NZ_CP017483.1\|WP_070425507.1\|664390_665002_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP017483.1\|WP_019182878.1\|684780_687840_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379297
NZ_CP017483.1\|WP_070425509.1\|666284_668027_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP017483.1\|WP_070425513.1\|676700_679883_-\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|366285
NZ_CP017483.1\|WP_019182886.1\|670705_671644_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NZ_CP017483.1\|WP_019182896.1\|663461_664310_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP017483.1\|WP_070425510.1\|669677_670487_+\|zinc-transporter-ZupT	unknown	unknown	gnl\|CDD\|235253
NZ_CP017483.1\|WP_019182890.1\|668036_668636_-\|NfuA-family-Fe-S-biogenesis-protein	unknown	unknown	gnl\|CDD\|132384
NZ_CP017483.1\|WP_019182877.1\|687930_688968_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP017483.1\|WP_019182881.1\|680712_681594_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP017483.1\|WP_019182894.1\|665268_665733_+\|ribonuclease	unknown	unknown	gnl\|CDD\|238340
NZ_CP017483.1\|WP_070425512.1\|675822_676701_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197314
NZ_CP017483.1\|WP_019182889.1\|668726_669068_+\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP017483.1\|WP_070425508.1\|665729_666176_+\|barstar-family-protein	unknown	unknown	gnl\|CDD\|240164
NZ_CP017483.1\|WP_152663808.1\|681590_682895_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270450
NZ_CP017483.1\|WP_019182876.1\|689116_689386_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601

Protein	Function_ID	Function_description	E-value
NZ_CP017483.1\|WP_019182888.1\|669072_669492_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.85807e-20
NZ_CP017483.1\|WP_019182879.1\|682940_684554_-\|hypothetical-protein	gnl\|CDD\|227662	COG5368, COG5368, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP017483.1\|WP_019182882.1\|679879_680716_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.95466e-86
NZ_CP017483.1\|WP_070425514.1\|689382_689682_-\|YciI-family-protein	gnl\|CDD\|183103	PRK11370, PRK11370, YciI family protein.	2.10972e-59
NZ_CP017483.1\|WP_070425507.1\|664390_665002_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	6.05468e-109
NZ_CP017483.1\|WP_019182878.1\|684780_687840_-\|TonB-dependent-receptor	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	5.48282e-10
NZ_CP017483.1\|WP_070425509.1\|666284_668027_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	9.63307e-13
NZ_CP017483.1\|WP_070425513.1\|676700_679883_-\|discoidin-domain-containing-protein	gnl\|CDD\|366285	pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.	4.83727e-11
NZ_CP017483.1\|WP_019182886.1\|670705_671644_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	3.53255e-113
NZ_CP017483.1\|WP_019182896.1\|663461_664310_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	6.37077e-06
NZ_CP017483.1\|WP_070425510.1\|669677_670487_+\|zinc-transporter-ZupT	gnl\|CDD\|235253	PRK04201, PRK04201, zinc transporter ZupT; Provisional.	5.43533e-130
NZ_CP017483.1\|WP_019182890.1\|668036_668636_-\|NfuA-family-Fe-S-biogenesis-protein	gnl\|CDD\|132384	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.62772e-74
NZ_CP017483.1\|WP_019182877.1\|687930_688968_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.19894e-109
NZ_CP017483.1\|WP_019182881.1\|680712_681594_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.07685e-89
NZ_CP017483.1\|WP_019182894.1\|665268_665733_+\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	3.63825e-42
NZ_CP017483.1\|WP_070425512.1\|675822_676701_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197314	cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains. Human TDP2, also known as TTRAP (TRAF/TNFR-associated factors, and tumor necrosis factor receptor/TNFR-associated protein), is a 5'-tyrosyl DNA phosphodiesterase. It is required for the efficient repair of topoisomerase II-induced DNA double strand breaks. The topoisomerase is covalently linked by a phosphotyrosyl bond to the 5'-terminus of the break. TDP2 cleaves the DNA 5'-phosphodiester bond and restores 5'-phosphate termini, needed for subsequent DNA ligation, and hence repair of the break. TDP2 and 3'-tyrosyl DNA phosphodiesterase (TDP1) are complementary activities; together, they allow cells to remove trapped topoisomerase from both 3'- and 5'-DNA termini. TTRAP has been reported as being involved in apoptosis, embryonic development, and transcriptional regulation, and it may inhibit the activation of nuclear factor-kB. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	6.27372e-23
NZ_CP017483.1\|WP_019182889.1\|668726_669068_+\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	2.8069e-39
NZ_CP017483.1\|WP_070425508.1\|665729_666176_+\|barstar-family-protein	gnl\|CDD\|240164	cd05141, Barstar_evA4336-like, Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.	1.3271e-24
NZ_CP017483.1\|WP_152663808.1\|681590_682895_-\|extracellular-solute-binding-protein	gnl\|CDD\|270450	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold. This group includes the periplasmic maltose-binding component of an ABC transport system from the phytopathogen Xanthomonas citri and its related bacterial proteins. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.42943e-136
NZ_CP017483.1\|WP_019182876.1\|689116_689386_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	1.96492e-31

>NZ_CP017483.1|WP_019182886.1|670705_671644_-|RluA-family-pseudouridine-synthase
MTSVRIITVPADRAGQRLDNFLLGQLKGAPRSLIYKLVRSGQVRVNGGRAKAERKLEGGDEVRVPPVRLNEEGDKAGPPAAFMKRLEDAIVFEDDRLLALNKPSGVASHGGSGISFGAIETLRALRPGKTLELVHRLDRDTSGLLIVAKKRSALSELQALLREDHGAGIRKRYLTLLAGRMPDGTMTVDAPLHVGLRQGGERHVQVNPIGKESISHFKVLERKGGHSYCEVRIETGRTHQIRVHAQHLGHPVAGDDKYGDPDVNKRLREQIGLKRLFLHAASLEFALDAGKTPYLINAPLAEELVEVLNRLK
>NZ_CP017483.1|WP_070425510.1|669677_670487_+|zinc-transporter-ZupT
MPDISTENVWIALAVTLAAGLATALGSLMVLFSRRPNPRLLAFGLAFAGGAMVFVSLTEILNKAIDSFTQAYDARLGFAYGTAAFLVGVLLIVVIDHLIPNPHESLDKQDPLFRDNNKAYIKRVGLLTAVAITAHNFPEGLATFFATLESPSVGMPLAFAIAIHNIPEGIAIAVPVYFATQNKFYAFGASLLSGLAEPIGAAIGYVALSGVLNHATFGWVFGIISGVMVFLALDELLPAAKRYAKGHETVYGLVAGMGSLAISLVLFKW
>NZ_CP017483.1|WP_019182888.1|669072_669492_+|energy-transducer-TonB
MKLQYIVLSSLAVAALAGCNKTPEQPAAPVAAPTEVAAVKTPPPEYPIELACQGIGGTSTFKVTIAADGQPSQVQLASGSGNAQLDEQAQKAVQAWQFKAGTRAGQTVSTTIQVPVSFNPPQPKPDECFAIEERLRRGG
>NZ_CP017483.1|WP_019182889.1|668726_669068_+|4a-hydroxytetrahydrobiopterin-dehydratase
MADLIPLAQAHCVPRKGSDHKLGTARVTELLAQIPGWELAEAGQALTRTFRFDNYHGTMAFVNALAWVAHREDHHPDLGVHYDRAVVRFSTHDVGGLSENDFICAAKASALTE
>NZ_CP017483.1|WP_019182890.1|668036_668636_-|NfuA-family-Fe-S-biogenesis-protein
MIQISDTAQSYFRKLIEREAVPGMGVRLTAVDAGTPRADARLEFADPGELLGDEWAVDCDGFTLYVAATSVAWLDGAEIDFVTNATGSQQLTIKAPKIKGEAPTEGSSLVERVRWVVENEVNPQLASHGGKVAVQEVSAEGVVLLRFGGGCQGCGMADVTLKQGIEKTLMGRVPGITAVRDATDHESGDAPYIPRGTAA
>NZ_CP017483.1|WP_070425509.1|666284_668027_-|hypothetical-protein
MPLRRADDILDWLLARQPDKRILEKTTGLPYGWGLWLRALSPLPRPFRPSEVLAELAQREPMPAGGRLPELSFIQAMRRLLWQGWDPAPRDQRWMRWTSALISALLHLMFALLLLWVALIRPPSEPEQGGESGRVQVEFVGRGTPQQEQGASPAAAEPATADAAIAAAMANAQAMAQAEADARTASAPQPTAAPAPPSEPQPAPPAPATPAVEQPVQATEVAQATTDFVVPPTSVPRTEVRVMTREPQDIAVRERTVVTVEAPTPRTTVPAPRTAEPQLRTPELTVQERQVTVVQAPTPTVAIAGPRVEATVPQREVQVREREIRPVTAPAVNVATLPTREVAVPGRSPEVAVRERAVPNAAPRPAPPSPAAASSTATAPAAANASTAASTSTAPAATRAPASPSKAPPGSWTTPNRSDDWGAANHPQDADLNGRAVSATQGNGSSLFKADGSVRVPGQEGHGNSERGAPGGEKDGWSKERIAQSGTWLKRPPYDYTPTSFDKYWAPNESLLAEWVRKGIKAVEIPIPGTSSSISCVISVLQFGGGCGLSDPNMQDQPAIARPPPDIPFKKELQEDKGSR
>NZ_CP017483.1|WP_070425508.1|665729_666176_+|barstar-family-protein
MTHDGFELGLHDINNAGIYAIGNDDVAPLSAAMRDAGLRVIQIDLAGCEDKRTLLMRLAARLDFPTGFGGNWDALTDNLRDLAWLPANGYALFFNDADALRSEAGAEFDTLLDVLDEASRYWGESNVPFWAFVALQDADVEPDADPAP
>NZ_CP017483.1|WP_019182894.1|665268_665733_+|ribonuclease
MRKPLLLLIAIVLLVGGLAAIKLAQRPPAPQFAPSLTQPDSAPAAPAPTSSSRTTRDPLPPFLPAEARDTIALIQRGGPFPHRQDGSIFSNREQRLPQRPRGYYHEYTVDTPGAGNRGARRIVTGGTPPTGWFYTDDHYETFRSFDVPPAGSWQ
>NZ_CP017483.1|WP_070425507.1|664390_665002_-|superoxide-dismutase
MAYTLPKLSYAYDALEPHIDAATMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVKKTKSLPENLQGVVRNNGGGHANHTLFWTVMSPNGGGAPVGDVAKAIDSQLGGVEKFKEGFTKAALTRFGSGWAWLSVTPDKKVVVESSANQDSPLMDGNTPILALDVWEHAYYLKYQNRRPEYIGAFFNVVDWNEVERRYQEAIA
>NZ_CP017483.1|WP_019182896.1|663461_664310_+|endonuclease/exonuclease/phosphatase-family-protein
MRTHITGGTRGWTGWILLLLLAAPAAGAHARQAEDALPSLKIATLELPTQDDAQWQQRRDQVLQLLESMQPDVIAVQRVLQTQGRNPACWLASRLRYSCDFVTADPPSQPLRHGSAMLTRLPVTDDAVTLLHPPGQFSAAGMLRVKLREELINIYVARLRPEPDDAQIRRHQTTDLMTWIGATADGLPSLIAGDFSAEITELVGSTPGFQPARKNPGERVDPPSLAGAARGHGLDVLFQVKHFGGIRQDSIKLPASEGDAAAMRLGTMATLRLQTPESTSAP
>NZ_CP017483.1|WP_070425512.1|675822_676701_-|endonuclease/exonuclease/phosphatase-family-protein
MRQMMRMRRGLLAAVLAFAPVVAMAQAAGAGAGQEMTMVTFNLHHDRENWPARRQVILRELQALQPDAIALQEVIQKPHVRNQAAWLARKLGYEYQFVSTDPPGRFKRYGNALLTRRPVLTRNDHLLAPINDYRTVAHLRIDVDGRPVNVYATHLNERSDEVGSRIRGEQVADLLTFIAQTAGDAPVVVAGDFNALVDAGDLSELRNHYGDSYGSVHVNNELAQVSTLNRHYYDAPSRIDHIFFQQDRLLAREAKLLFDQPYADGRWASDHYGVWTRLQFAPGTGNAGATTP
>NZ_CP017483.1|WP_070425513.1|676700_679883_-|discoidin-domain-containing-protein
MKHAVVAVGLGLVWSLAASAAPPATPVLPAPKVLDSFDDMTPWKLVVSDQVSGSLRSVAGNGGGRALCLDYDFHNVSGYVGIRRELGIQYPENYQFGFQLRGDSPANDLQFKLIDASGDNVWWVNRPGYAFPKAWAPVQYRKRQIDKAWGPETDPTLKRSAAIEFTIYSKVGGKGTVCFDRLTLQGLPAADTSSLSPSVIADTATALQNRIVDGKPDTVWISGGVAEQTITLDLHKVREFGGAVIEWLPGLEATRYEVRSSADGRSWDTRREVTAGGGGRDWLALPDTEARYLRFDLKGGPSWRYGIRDITLKPLEFADTPNDFVRSVGADLPRGSVPRGFTGEQPYWTLLGLDGGREQALIGEDGALEVAKSSFSVEPFVLVDNKLLSWADVKTSQSLQDDYLPIANVGWTHDKAGLQVTGFVQGTPDNAQLVGRYTLRNPDKVAHEYTLALAVRPWQVNPPTQFLNTVGGVSRIDNLSVDPTHVDVNGKPRLYPAQAPDAAFATAFDSKLDVVHLASGKLPGTTEVKDGTGLASGALLYRWKLEPGQSREVAIVLPQTGNWTMPKVFDAAKAQQQVASMWRTKLDQVTLQVPAAGKPLADTLRTALAHMLISRIGPSIQPGTRSYSRSWIRDGAMISEGLLRMGRSDAVRQYVNWYAPYQFDNGKVPCCVDSRGSDPVPENDSHGELIFNIAEYWRYTGDTTFLEVMWPHVQGAYQYMEQLRLSERTEENRARTPAFYGMMPVSISHEGYSAKPMHSYWDNFWALRGYKDAAIIASTLGKAEAMQISESRDQFRDDLQASLLAATAQHSIDYLPGSAELGDFDATSTTIALAPAGEQGRLPQPYLNNTFERYWSEFEARRDGKREWKDYTPYEWRNVAAFVRLGWRDRAWQATEFFFKDRAPQPWNQWAEVVSRTPRKPFFLGDLPHAWVASDFVRSALDMFAYSRDIDDSLVLAAGVPSRWLEGKGVGVQGLRTPNGQLNYALVRNDKQLTLTVSAGLIPPAGGVVLPWPYSGEPGATTINGEPAQWVGGELRVMQVPAKVEIEIPASVRRAERKAP
>NZ_CP017483.1|WP_019182882.1|679879_680716_-|carbohydrate-ABC-transporter-permease
MSREIGQSRWHAWWVNGGLLVLAALSLAPLLWMLSVSFMPTGEAAHFPPPLLPSSLTTANYHELFARTGMANNFVNSLMVSLAITFGSLLLNTMAGYAFAKLRFAGRERIFQLLLAALVIPAQVAMLPLFLLMKQLGLVNNFGGVIVPALATVFGIFLVRQYARSIPDELLEAARIDGAGELRIFFQIVLPMLKPVLVTLSIFTFMAAWNDFMWPLIVLTDQEHYTLPVALATLSREHIMDVEMMMAGAVVTVVPVLLLFLALQRYYIQGLLLGSVKG
>NZ_CP017483.1|WP_019182881.1|680712_681594_-|sugar-ABC-transporter-permease
MKQRSLAGWMFAGPAILVIAVFFGLPVFSALALSITDFDLYALADGENLRFVGLGNYIDLLQTPMFWKSLWNTTYFVIVGVPMSIAVSLGAAILLNAPAARFKALFRTALFAPVVTTLVAVAVIWRYLFHTSYGLVNYGLGHLGISPIDWLGDPNWAMPTIMLFAVWKNFGYNMVIFLAGLQAIPHDLYEAARIDGASRWKQFLHITLPMLGPVLLVVGVITVSGYFQLFAEPYVMTRGDPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLIILGVTSIMLRFGRKRQLV
>NZ_CP017483.1|WP_152663808.1|681590_682895_-|extracellular-solute-binding-protein
MLLVGSLLLSACRKEPEGVTVRFWAMGREAEVVTGLIREFEAENPGIHVDVQNIPWTAAHEKLLTAFAADGLPDVCQLGNTWIPEFAELNTLTPLQPYVAQSKVVDPADYFQGIWDTNVIHDELVGVPWYVDTRLLYYRKDMLAKAGYDHPPRTWEEWNAMMAAIKKMQGANRYAVLMPINEFEQQLSFALQQPDPLLRDDDTRGNFSSPGFRRTLGFYENMFAQGWAPRMSETQISNVWDEFFRGFNVFYVSGPWNIREFKKLQPKALEGQWGTAALPGPDGPGAGIAGGTSLVIFRSSQQKEASWKLIEFLSRPAIQERFHSIIGDLPPRRSTWDYPSLANDPLAQPFRDQLERVKPTPKVLEWERIVQEMRIITEQVVRGGMDQDVAVKELDKRVDKVLAKRRWMHEQHRRDASGVSDKQHSSAVATEAAP
>NZ_CP017483.1|WP_019182879.1|682940_684554_-|hypothetical-protein
MQARHLLTAAAISVAAVACQPQAQQEPAKPKPPVILVEADVPPRPMKPELPPLFDDIERRTFQFFWDTTNEVNGLSPDRYPSRPFASIASVGYALTAYPIGIENGWVSRTQAIDRTLLTLKYFRDLPMGPQRTGKAGYKGFYYHFLDMQEGRRYDSWVELSSVDTALLMMGVLFAQSYYDGDDAREKEIREIADTLYKRVDWPWLQQRAPLISMGWFPESGFIDHDWMGYNEAMMVYILALGSPTHPVSPDAWTVWTRTYDNDWGVYQGQEYLSFGPLFGHQYTHVWVDFRDIQDAYMRERGSTYFLNSRSAALAQREYAIANPMNWKDYGQNVWGLTASDGPQNTTQEYRGEQRQFRHYSSRGAGLRENFDDGTIAPTAAISSIVFAPEEVIPAAVEMHKRYGDYIYSSYGFLDSFNPSFNYDIPIKTGRLVPDRGWVASDYIGIDQGPILTMIANYRNDFVWNVMKKNAHIRKGLERAGFSGGWLTPEGEDQPMELQKDEKAASARSVGIAESRAAAAQEQKNNSNSNRNQQQGK
>NZ_CP017483.1|WP_019182878.1|684780_687840_-|TonB-dependent-receptor
MTYSNHRNRAPARSLLSSALVTCLMLGAAPSVMAQSATSSLRGQVAEAAAGTEVTATNVASGTVRRATTRADGSYSLMGLDPGTYNVVANGQTQKVTVTVASTATLNFSGAPANGGTANATNLDTVNVIAPTLLQEVRTSEVGKTVSLQQIQTTPQVSRNFLEFADAVPGLIFTRDAKGNTSLRGGATNSDGTNVYIDGVGQKSYVKGGGVAGQSGSAGNPFPQLAIGEYKVISGNYKAEYGQVSSAAVTAATKSGTNEFKGETFYRYTNEDMRAKTPAERQAGQSKEASAEKEYGFALGGPIIQDKAHFFVTYEAKRFDLPVTIAPDGAVGRAAALLPPEGAAGLGPASQPFQQDLIFGKIDFEPTDNDRIELTFQDRDETQSQFSGQTSPEAGREVVNTDRRYALRWNHSGERYYNELMVTHEDSFNNPTPLTLANGITYTAPDGTEDRTVVKIGGASALDSQVKGQKGWSIEDNLTLDGIEWQGDHTIKMGAKYKQIDLYASDAAQINPTFTYSLGDPDFPSSIPYKAQFVKPVTGVSGVSGEVRSKSKQIGLFIQDDWQVNDHLQLNLGLRWDYEKTPSYLDFVTPQQVVDAIYSQDPRAAAGQTYADSLALGGLNIGDYISNGHNRKAFKDAWQPRLGFSYDVNADEQHVFHGGAGRSYDRDLFDNLQLETTKLALPQPTIYFRNPATGTCIDGQAACYDWNPNLLNGIGNLQALVGSTSNAGLEVDLLNNNLKVPYSDQFSFGMSNQVGEWLTDATISRTLSYDGFAFTLGNRYPTGQFFDDPRLCGGTDPGLSQAWSCNVPGFGSLIIGQQGIKTRATQVLLSAQKPFTQESGWGTSVAYTWTTARHNRDINEKYAFDRGLIEDYPTIRSNGAPRHRLVVTGSYAGFWGITFGGKVTLATPTAVNDWYPVPQASGYNLPTPQAAVPNANGKFLLGGKIFGYRSVDLQATKTFKMPGETELYARIDIINVFNFDNFSTYNYVKTNGKLQASYNETGDIIGTPRQVKAEVGFRF
>NZ_CP017483.1|WP_019182877.1|687930_688968_-|LacI-family-DNA-binding-transcriptional-regulator
MEGGEVNKAAITIKDVAREARVSVATVSRALNGHENVAEPVRKLVLEVAARLRYTPHAAARSLSSRRTNTIGVVLPDLYGEFFSELMRGIDGVARERRQHLLVSSYHGDQEQQGAALRAMRGRVDGLLVLSPYAESPGFLTDNLPQSLPTVLINTYLPEQDHPVLSIDDHAGAMAMTRHLLDVGHRRIAFISGPDLNYDARERLRGFRDALAAFGDAAEGIELPGDFDEASGHRAGQELLAAGTLPDAVFAANDMMALGCLYAFAQAGVRVPFDVALAGFDDIPLARFVHPSLTTMQVSIADLGDKAATRLLQLMDGNNTEGAGDKQTLVPTLIVRDSSRARTEQ
>NZ_CP017483.1|WP_019182876.1|689116_689386_-|BolA-family-transcriptional-regulator
MNRVDRIREALQQALDPELLEVKDDSHRHAGHEGARDGRGHFKVHVVSAAFEGKLPLARHRAVYAALGTMMETDIHALSIRAETPVKNR
>NZ_CP017483.1|WP_070425514.1|689382_689682_-|YciI-family-protein
MWYVIEGYDGTDVLAARLASRPAHLARLQALQDEGRLLLAGPCPAIDSEDPGPAGFSGSVVIAAFDSLTHAQDWAAADPYVESGVYVRVQVRPFRKVLP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP017483_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017483_2

2280787-2280869

Orphan

Consensus_repeat	Method
GGTAGAGCCGACCGTTGGCCGGCTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017483_2

>merge|NZ_CP017483|2|2280787-2280869|CRISPRCasFinder
GGTAGAGCCGACCGTTGGCCGGCTGCCCGTCACCAGCGAATCAATCAGCGACACAGGTAGAGCCGACCGTTGGTCGGCTGCCC

>NZ_CP017483|2|1|2280787-2280869|CRISPRCasFinder
GGTAGAGCCGACCGTTGGCCGGCTGCCC	GTCACCAGCGAATCAATCAGCGACACA
GGTAGAGCCGACCGTTGGTCGGCTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017483.1\|WP_070426325.1\|2270547_2271360_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP017483.1\|WP_070427497.1\|2283441_2284410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017483.1\|WP_070426326.1\|2272019_2274851_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP017483.1\|WP_026069927.1\|2287408_2287612_-\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|227768
NZ_CP017483.1\|WP_070426331.1\|2280870_2281533_-\|DUF480-domain-containing-protein	unknown	unknown	gnl\|CDD\|225674
NZ_CP017483.1\|WP_019184109.1\|2271425_2271989_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132044
NZ_CP017483.1\|WP_046274218.1\|2274943_2276545_+\|glucan-biosynthesis-protein-D	unknown	unknown	gnl\|CDD\|237327
NZ_CP017483.1\|WP_026069926.1\|2281644_2282568_+\|5'-nucleotidase,-lipoprotein-e(P4)-family	unknown	unknown	gnl\|CDD\|319836
NZ_CP017483.1\|WP_070426329.1\|2278091_2280068_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|130146
NZ_CP017483.1\|WP_070426333.1\|2287708_2288620_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP017483.1\|WP_070426334.1\|2289633_2290422_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP017483.1\|WP_019184125.1\|2290475_2291348_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|238710
NZ_CP017483.1\|WP_070426324.1\|2270095_2270473_+\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|238008
NZ_CP017483.1\|WP_070426323.1\|2268889_2270092_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|224316
NZ_CP017483.1\|WP_070426332.1\|2282564_2283290_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP017483.1\|WP_070426328.1\|2277240_2277933_-\|SEL1-like-repeat-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP017483.1\|WP_070426327.1\|2276576_2277188_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP017483.1\|WP_019184123.1\|2288670_2289576_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP017483.1\|WP_070426330.1\|2280220_2280751_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP017483.1\|WP_019184120.1\|2284409_2287124_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325

Protein	Function_ID	Function_description	E-value
NZ_CP017483.1\|WP_070426325.1\|2270547_2271360_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.23264e-166
NZ_CP017483.1\|WP_070426326.1\|2272019_2274851_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.93984e-77
NZ_CP017483.1\|WP_026069927.1\|2287408_2287612_-\|DUF465-domain-containing-protein	gnl\|CDD\|227768	COG5481, COG5481, Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown].	1.11779e-09
NZ_CP017483.1\|WP_070426331.1\|2280870_2281533_-\|DUF480-domain-containing-protein	gnl\|CDD\|225674	COG3132, COG3132, Uncharacterized protein conserved in bacteria [Function unknown].	4.49376e-69
NZ_CP017483.1\|WP_019184109.1\|2271425_2271989_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132044	TIGR02999, Sig-70_X6, RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.	2.08359e-48
NZ_CP017483.1\|WP_046274218.1\|2274943_2276545_+\|glucan-biosynthesis-protein-D	gnl\|CDD\|237327	PRK13273, mdoD, glucan biosynthesis protein D; Provisional.	0
NZ_CP017483.1\|WP_026069926.1\|2281644_2282568_+\|5'-nucleotidase,-lipoprotein-e(P4)-family	gnl\|CDD\|319836	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily. Molecular class C acid phosphatases (CAPs) are nonspecific acid phosphatases with generally broad substrate specificity and optimum activity at neutral to acidic pH. Members include Haemophilus influenzae lipoprotein e (P4), Elizabethkingia meningosepticum OlpA, Helicobacter pylori HppA, Enterobacter sp. 4 acid phosphatase PhoI, and Streptococcus pyogenes M1 GAS LppC. Lipoprotein e (P4) exhibits phosphomonoesterase activity with aryl phosphate substrates including nicotinamide mononucleotide (NMN), tyrosine phosphate, phenyl phosphate, p-nitrophenyl phosphate, and 4-methylumbelliferyl phosphate. The role of P4 in NAD+ uptake appears to be the dephosphorylation of NMN to nicotinamide riboside, which is then taken up by the organism. Elizabethkingia meningosepticum OlpA is a broad-spectrum nucleotidase with preference for 5'-nucleotides, it efficiently hydrolyzes nucleotide monophosphates, with a strong preference for 5'-nucleotides and for 3'-AMP; OlpA can also hydrolyze sugar phosphates and beta-glycerol phosphate, although with a lower efficiency. Helicobacter pylori HppA is also a 5' nucleotidase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.02186e-85
NZ_CP017483.1\|WP_070426329.1\|2278091_2280068_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP017483.1\|WP_070426333.1\|2287708_2288620_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP017483.1\|WP_070426334.1\|2289633_2290422_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	5.65852e-52
NZ_CP017483.1\|WP_019184125.1\|2290475_2291348_-\|methylglyoxal-synthase	gnl\|CDD\|238710	cd01422, MGS, Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.	1.75789e-37
NZ_CP017483.1\|WP_070426324.1\|2270095_2270473_+\|EF-hand-domain-containing-protein	gnl\|CDD\|238008	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.	7.03753e-07
NZ_CP017483.1\|WP_070426323.1\|2268889_2270092_+\|fatty-acid-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	3.08688e-77
NZ_CP017483.1\|WP_070426332.1\|2282564_2283290_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	1.67135e-106
NZ_CP017483.1\|WP_070426328.1\|2277240_2277933_-\|SEL1-like-repeat-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	4.20926e-05
NZ_CP017483.1\|WP_070426327.1\|2276576_2277188_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	5.72187e-110
NZ_CP017483.1\|WP_019184123.1\|2288670_2289576_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	3.81828e-134
NZ_CP017483.1\|WP_070426330.1\|2280220_2280751_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.17917e-25
NZ_CP017483.1\|WP_019184120.1\|2284409_2287124_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0

>NZ_CP017483.1|WP_070426330.1|2280220_2280751_+|GNAT-family-N-acetyltransferase
MSAVIQTDRLHLRLIDPDHDAADMLALLNEPGFIRNIADRGVRTLAQARDYTAERVLGSYTLNGFGMYAIVRREDGAWLGNAGLVRRAGLPAPDIGYALLSQYEGNGYAFEAARGVMHYARDVLGHTDLYGIVSPDNVRSAALLRKLGMEDRGDLLLPPPHAEVVLLFATPGAPAP
>NZ_CP017483.1|WP_070426329.1|2278091_2280068_+|UvrD-helicase-domain-containing-protein
MHGLNPPQHAAVMHCEGPLLVLAGAGSGKTRVIVEKIGQLIASKRYPARRIAAITFTNKSAKEMRERVAKRLRGDDADEVTICTFHALGLKFLQIEHAAVGLKRGFSIFDADDSTAQVKDLMHGAKPDDIEDVKNLISRAKNAGLSPEQAMAAARSTREKEAASVYERYQLRLTAFNAVDFDDLIRLPVQVLEENPEIALAWRERIGYLLVDECQDTNDAQYRLLKQLAGSKGNFTCVGDDDQSIYAWRGANPENLQQMARDYPALEIIKLEQNYRCSNRVLRAANALIANNPHEHLKKLWSDQADGERIRVWECRNSEHEAEKVAAEISFLATSRKIPWSDFCILFRGNFQSRPLEKALQLVRAPYHITGGTAFLERQEVKDTLSWLRLLVNPDDDTAFMRAVQSPKREVGAGTLAKLAELASEKDLPMAHAAEAIGALSQLPPRAANGLSRFTDILRDLRAEMPKLSSGDLVRKLVKESGLVSDLRSSCKEESVYQRRLGNLEELAQWFEGGPRGASTADLAAQLALLSRNDKDDGGNQVRMMTLHASKGLEFPYVFIIGCEDGVLPHQVSLDEGNLQEERRLLYVGITRAKVQLWMSYSKLTRKFGEHVRLKPSRFFEEIPAEEMQRDGADPVADAARKKERANAGLAAIQALFD
>NZ_CP017483.1|WP_070426328.1|2277240_2277933_-|SEL1-like-repeat-protein
MLVAALAALPAWGQSSQPDLRAQDAQDTDAFLNRHPDLRYRKLGKEAQARGRLEEARRFYRLGARHADKLSQAALAEMWWNGQGGGQDRALAYAWMDLAAERGTEFLLVLRERYWAALTPDEQTRAVQEGQALYAEFGDTVAQPRLERELRRGLSEVTGSRTGSVGGMRMLVRDDRGQRYVEPDVFYRDEYWQPAQYWQWQARQLEAAGRAIGTGSVEVGMPTTVPGLRD
>NZ_CP017483.1|WP_070426327.1|2276576_2277188_-|thymidine-kinase
MAKLYFYYSAMNAGKTTTLLQSAHNYRERGMRVAILTPRLDDRAGHGVVASRIGLKADGIAFHPDTDLQQLIAEDIAAHGPLGCVLVDEAQFLSRSQVWQLSEVVDQMRIPVLCYGLRTDFRGELFEGSQYLLAWADEMQEIKTICHSGKKATMTVRVDEHGHAVQDGPQVEIGGNERYVSVSRAEFKKIMRGEGRIDPLQAG
>NZ_CP017483.1|WP_046274218.1|2274943_2276545_+|glucan-biosynthesis-protein-D
MQRRDFLRNASVALAAFGLPALPACAAQGNQVGLRRLGQPQPFDFASLKGQARALSQAAYQSHKRTLPGPVEGLDWDQYQSIQYRQDHALWADQPGRYQAKFFHLGLYFHSPVRMFDVTDGKAQELAYDGAAFDYGKSGLKGSHLPADLGFAGFRLNTRKDTDRDFAAFLGASYFRAVGKEGQYGQSARGLAIDTGMGKPEEFPDFIAYYLEQPAADSNTLVVYALLDSPSTTGAYRFAITNGDVLLMDIDCALYPRKAIERLGIAPCTSMYQVGENDRRMAWDWRPEIHDTDGLSMWTGAGEWIWRPLCNPYNLRFNMFVDNNPRGFGLLQRDRNFDHYQDDGVFYEKRPCLWVEPKGQWGKGSVQLVEIPTVDETFDNIVAFWNPEAKPQPGQELLLGYRLYWGAEPPARPPLAHCVATRTGLGGVIGKKREYFSWRFAVDFEGGELAAMIDKGEVEAVVQVSRGRTEIVSARPLREIKGYRAMFDVVPPDDSTEQIDIRLYLRSGGKTLTETWLYQYSPPPKGAAERTLY
>NZ_CP017483.1|WP_070426326.1|2272019_2274851_+|serine/threonine-protein-kinase
MEASRWRQLSCLLDQLLELPEPAREQRLSRLRVEDPGLAEDVERLLAHERDSHEFLAQPLWTAAPEDSRVGTRVGPYRLLRPLGEGGMGEVWLAERADGLYERQVALKLLRSGYADPGLRQRFSREREILARLQHPNLAHLLDAGVDLQGQPYLALAYVEGEPITEHCQRLALPLERRLQLMLQVCAVVSHAHANLIVHRDLKPSNILVTAEGEVKLLDFGIAKLLDDDEGKPPVHPPTEARAFTLHYAAPEQVRGEPVSTLTDVYSLGVVLFEVITGQKPYRLRRHSDAEWERSILEVQAPRASAVVARVAAAGGEQAVAARRLSRRLRGDLDTILLKALQKEPGQRYASVEALAQDLRRFLEGRPIHARPQHVGYRLRKYLGRHRWGVALGSMAVLALLALALTALWQMQQARREVARAQAMEDFTVGLFDRAAGVRHGSFDLRQLLATGQQRGEAELRDQPLSLAELEGVIGRLRIGMGDYQLALQTLDHQRALLEQAGEVPPALQLEAVTQRGRALRMLGRSRECVTHLTPMQALATQQRLRLPTVVAEYHTQLGRCQQLLGYRDNARASFEQARVLRRDVLRDTQGTAESLADLAALDSDDGRAAAALAGYRQALQLLQAKASARNPQLIALRRHMGETLAAQGDLDAAGQALQSAGADAVALYGPDHPETLSIRRLRALLALQRGDLQQAQAQLQQVHRLTRQALGEQHRDTGLTWHALGRLALERGDSATAIDDLGRAVAIWRQPDCVGLLPQGLYDYAAALAQGGRWQAALAALHEGRQWQAAQRGDDDASVQQADRQMAEIVSAQGDPRQAGEQLAALMRRADRAGPSSPALQRALQLAWGRNLGRMGQTVEARRALAPLLVGDAADLDSRALRWRARAAMAQLDCGTSPARARDALGQLRQELQVQWPQGGQLLQEVNRLRQDCVPAQVAAGP
>NZ_CP017483.1|WP_019184109.1|2271425_2271989_+|sigma-70-family-RNA-polymerase-sigma-factor
MDEGPDITVWLDSARAGDRAALDRVLTLLYQELHSMARRQLAGQQGRTLDATSLVHESYLKLLGSRGAARFEDRAHFFAYAASAMRSVVVDYARNRLARKRGGDLKRVELPENSSSGVRLDEDLLALDVALAQLHAVDAHLAKVVELRYFAGLSEQEIADLCQRSERSIRRDWQKARMFLLASVGEP
>NZ_CP017483.1|WP_070426325.1|2270547_2271360_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETTRRGLSPHLEGRSIHGVILRRPDLRWPIPPEISEQLPGQAIEAVRRRAKYLLLDTAIGSAVLHLGMSGSLRVLPGDTPVRAHDHVDISLDNGRLLRFNDPRRFGSLLWQPAGETHALLAGLGPEPLDDAFDGDYLFARSRGRSASVKTFLMDQGIVVGVGNIYAAESLFMAGINPLREAGKISRARYQRLADAVKQILAYAITRGGTTLRDFINPDGAPGYFEQELLVYGREGEPCRQCGRLLRHATIGQRASVWCGHCQR
>NZ_CP017483.1|WP_070426324.1|2270095_2270473_+|EF-hand-domain-containing-protein
MRLPTGNVSAKRRLVRRFACLGLAVGVLGATAQAQVTDTGSYLQRMDTDGDGRVSVEEYVQWLLYAFDHMDRNGDGVLRADELPGGKGAPITREQQRQTLIQRFHKQDANGDGYLSARELAAPPR
>NZ_CP017483.1|WP_070426323.1|2268889_2270092_+|fatty-acid-desaturase
MLDTLLNFLTGGVVGLGWWGMALVLLVFTQLTIFAVTLYLHRSQAHRGVDFHPVIAHFFRFWTWLTTSMITKEWVAIHRKHHAKVETDEDPHSPVTKGIGMVFWRGVELYREARAMRADIEQYGRGAPDDWIERHLYTPHANLGPVALLVINSVLFGLPGVALWAIQMAWIPFWAAGVINGLGHWWGYRNFESADTSTNLTPWAFWVGGEELHNNHHAFPSSARFSMRRWEFDIGWAVIRGLQALRLAKVLRVAPSMDVRPNIAVPDAETLKALLSHRFQAMTDYQRNVFVPALREEAAMAGAKLRKLLPRRMRRGLVNDGRWLKPDCRAQLSTWVEQRPRIRVLVEHRARLAALLEARGNDAAERLKLLQAWCHEAEASGIAALQNYAARLKGYALTAN
>NZ_CP017483.1|WP_070426331.1|2280870_2281533_-|DUF480-domain-containing-protein
MTDDTQTPALPVLSAAQARALGCLIEKEATTPDAYPLTVNAAQVAANQKTAREPVMALSAGDVHHALRQLESMGLARQQFSSRAERYEHRAGSALDLTRQQLAIVGLLLLRGPQTVNELLTRSERLFQFQDAEELRHHIERMIQRGLAVQLPRASGQREDRYMHLLGGPVDVQALAESYKGSSSSGGGGSPALEARVQQLEATVAELQEQLAELRAQLGG
>NZ_CP017483.1|WP_026069926.1|2281644_2282568_+|5'-nucleotidase,-lipoprotein-e(P4)-family
MRRSAVSLSVLACAVLALSACKRTETPADAAPPAAAAAASAPAATGDAAVAANDNLNAVLWMQRAQEYRAITEQTYRAAADHLDKALKEANWDALVPEERGNAAKGLKPAVVLDVDETVLDNSPYQARLVRDGKEYDELSWDQWVAEKKAKAIPGVVDFAKAANAKGVTLLYISNRAVHLKEATLANLREQGLPVADDSVFLGLGTVVDGCEQAGSEKNCRRRLAGQKYRVLMQFGDQLGDFVEVTANTNDGRDALLQQYHDWFGERWWMLPNPTYGGFEPAQFNNDYSQSRQARHDAKRAALDYAP
>NZ_CP017483.1|WP_070426332.1|2282564_2283290_+|orotidine-5'-phosphate-decarboxylase
MSRAPLPLRDDERLIFALDVPGRDDALAWVDRLGDAVSFYKIGMELLASGEYFEVLDALAARDKRVFVDLKFFDIPATAAAVIKRLSQWPVSYATIHGWHPAMMEACAAANGSDMRLLAVTVLTSMGRSDLAQMGIDREPVEVVVERALAAQAAGIDGVIASGQEAGPIRAATGDGFSIVCPGIRPGGPVGDDQKRTVGVAQAFADGADAIVVGRPIRLASDPQAAARAIQAEIAQALAAR
>NZ_CP017483.1|WP_070427497.1|2283441_2284410_+|hypothetical-protein
MSMSLKPWQYRGQVLALALCGLVLLSACKDKQIDPDAPASEPVAALQQLAQRVADNDLVGYAKAAVPPSQYARLQGAWSQGHSRWPLTELPLDGQLLPMLAALSRPDAPQRLQRSFDTQIAGQATQVRQAAHSMGLFGEQYLRNQSEYSDSERAHYTQVVNALSRWAAAAPLTDKQRARTTITLLTATARTAGLSTDAELQAAGMEESLRRLSPFIKAFKTALASYGLSLDEALTGLRGELTSELGDDAVVRIQYTLAGEQIEAQVRMTRREGHWYVTRTLEDTDALLQAADAAQAEHDARQAAEAEAAAAVKDDASASAKP
>NZ_CP017483.1|WP_019184120.1|2284409_2287124_+|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MKPMPNQNPLPFPGEEPPKTPDATSSSPATVPSDGAAAPVPPVAGAPAEAVAVDAEPAAIVPSAIVPGTRAPSGRPPWWSRLLGRLVEPWLSLKIEPEHPGQYNDGRPVVYVLEDYGLSNALILDKACREAGLPSPLVPIAGDPTGRKRAYLALSRRSSSNSLIPEQRGAKTHSDSLAKVLQAHRARGELDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLAVLLNGRSTIVRFAPPISLRTTVDEGLDPERTVRKLQRVLRTHFRRIRESVIGPDLSTRRLLVDKVLDADTVREAIASQAKRDNSKPADAWKKAHAYAWEIAADYSSPVVRSASFMLSHVWNRIYAGVLVHHLDKFKAAAPGHEVVYVPSHRSHMDYLLLSYLLYDRGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIRGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMISMTLRAFLRQPRKPVLFQPVYIGYEKLMEGGSYLDELSGRPKEKESIWSLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAQRAPEWNGQPVGEDEKPSWLSGTVDHLAERIQVHINGAADVNPINLLALALLSTPKHAMGEADLIAQIELCKTLLVEMPYSDRVTVTPHSPERIIAHAEEINVLTRIKHPLGDVLSVSGDTAVLLSYFRNNVIHLFTASSWVACCFQNNRRMSRTGLVQLGRTVYPFLQAELFLPWTEDEFAQRIEQTINVFVREGLLQNINDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGTLGAAELESLCQQAAQRLSLLYAPAAPEFFDRTLFRGFIQKLRELRLVWPDENSKLLFDARLDAWAKDAKFILGRELRHTIERVSPEAAKPEEPVSTD
>NZ_CP017483.1|WP_026069927.1|2287408_2287612_-|DUF465-domain-containing-protein
MDTMTPTDISARLAALRQEHRALDEQILGMAANGDDELEAKRLKRRKLQLKDCIAKLEDMLIPDEPA
>NZ_CP017483.1|WP_070426333.1|2287708_2288620_+|tRNA-2-thiocytidine(32)-synthetase-TtcA
MSAAVIRLPDPVPRARDPRAPGGVQDRLARQLRRQVGQAIADFGMIEAGDKVMVCLSGGKDSYTLLDILLQLQKKAPVPFELVAVNLDQKQPGFPEQVLPTYLASIGVPFQIIEQDTYSVVSRVIPEGRTMCSLCSRLRRGALYRHAAEHGFTKIALGHHRDDSVATFFLNLFHHAKLSAMPPKLRSDDGQHIVIRPLAYVSEADISAYAQARAFPIIPCTLCGSQDTLQRRQVEQMLQQWERDQPGRIDQIARALGNIHPSQLADPALFDFMALGRAAAAPLPDPPAWAGTAHDPGHAPGPA
>NZ_CP017483.1|WP_019184123.1|2288670_2289576_+|recombination-associated-protein-RdgC
MFFRNLTLFRFPTATDFSDVDTLLPQVLLKPVGPLEMNSRGFISPFGREEKAVFSHRVGDALWLTVGGEDKILPGAVVNDLLARKLEEIEEKEGRKPGGRERKRMKDDLLHELMPRAFVKSSRTDALIDLTHGYVAVDCSSSKKGENMMSDIRGLLGSFPAMPLNAEVAPRSILTGWIAGEPLPTGLSLGEECEMKDPAEGGAVVKCQHQELRCDEIDKHLDAGKQVTKLALVFEDNLSFVLGDDLIVRKLKFLDGALDQLEHADDDGRRAELDARFALQSGEVRRLFLLLEEAFKLSKAD
>NZ_CP017483.1|WP_070426334.1|2289633_2290422_+|M48-family-metallopeptidase
MSGFLRRLISPAVSTLQRDTVRLRLEDAEIDVLRVRDPRARRIKLSVDERGVRLTLPPRASLVMGERFLEQHRGWLSEQLRGYQATNLPPPLVIGEPGVLPLRGELLPLRWEAGRYATLRVDERGACLHWPARGTDATLRRTLREFYEAQTRADVGQWLPRYLPGLPRAPARLRLKVMSSQWGSLAPDGSMALDLALVLGRPSAFEYVLVHELCHLIQANHSPAFWAEVEKRFPAWHAERDYFQLEGRRLKATLRQLLTPTP
>NZ_CP017483.1|WP_019184125.1|2290475_2291348_-|methylglyoxal-synthase
MRIGLAANRLHHHDKHAALFRWLRASDTGLRELGVELHAVGRTFDAIQRLGFLQDFAPLRRYPNGREGGLMKLVAEVVGMGTPERTLDGAIYLMDPVDPSSVFPEATALKRQCVIHGKPFISTVATARDWVEVERLHAGLAPDPGADDLHAFEQHTLALIAHDAMKPAMLAFADEHFQVLSRFRNRVGTGTTGQRLNELAWSRGWPQGEEWVTRYQSGPMGGDAQIADRVLEGHCQRAIFFEDPHVARQHEADIQLLERAVTTVTDQAVCITAPRVAARWAQAAALRMGN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017483_1	1.2\|675066\|19\|NZ_CP017483\|CRT	675066-675084	19	NZ_CP017483.1	3123261-3123279	2	0.895
NZ_CP017483_1	1.4\|675162\|19\|NZ_CP017483\|CRT	675162-675180	19	NZ_CP017483.1	798415-798433	2	0.895

1. spacer 1.2|675066|19|NZ_CP017483|CRT matches to position: 3123261-3123279, mismatch: 2, identity: 0.895

ccggttccggcggctccgg	CRISPR spacer
ccgattccggcggcaccgg	Protospacer
***.********** ****

2. spacer 1.4|675162|19|NZ_CP017483|CRT matches to position: 798415-798433, mismatch: 2, identity: 0.895

gttgctccggcggctccgg	CRISPR spacer
gttgctcaggcggctcagg	Protospacer
******* ******** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017483_1	1.2\|675066\|19\|NZ_CP017483\|CRT	675066-675084	19	NC_010905	Amycolatopsis benzoatilytica strain DSM 43387 plasmid pA387, complete sequence	18196-18214	0	1.0
NZ_CP017483_1	1.2\|675066\|19\|NZ_CP017483\|CRT	675066-675084	19	NZ_CP013052	Sinorhizobium americanum CCGM7 plasmid A, complete sequence	152445-152463	0	1.0
NZ_CP017483_2	2.1\|2280815\|27\|NZ_CP017483\|CRISPRCasFinder	2280815-2280841	27	NZ_CP033025	Agrobacterium fabrum strain 1D132 plasmid pAt1D132b, complete sequence	53964-53990	5	0.815
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	NZ_CP026653	Streptomyces dengpaensis strain XZHG99 plasmid unnamed1, complete sequence	60352-60382	6	0.806
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	350128-350158	7	0.774
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	MT952853	Arthrobacter phage Orcanus, complete genome	2433-2463	7	0.774
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	174556-174586	7	0.774
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	NC_049478	Arthrobacter phage Mufasa8, complete genome	21114-21144	7	0.774
NZ_CP017483_2	2.1\|2280815\|27\|NZ_CP017483\|CRISPRCasFinder	2280815-2280841	27	NZ_AP019370	Silvanigrellales bacterium RF1110005 plasmid 68K, complete sequence	21087-21113	7	0.741
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	997779-997809	8	0.742
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	NC_049478	Arthrobacter phage Mufasa8, complete genome	21138-21168	8	0.742
NZ_CP017483_1	1.3\|675108\|31\|NZ_CP017483\|CRT	675108-675138	31	MT498055	Arthrobacter phage Bumble, complete genome	6400-6430	10	0.677

1. spacer 1.2|675066|19|NZ_CP017483|CRT matches to NC_010905 (Amycolatopsis benzoatilytica strain DSM 43387 plasmid pA387, complete sequence) position: , mismatch: 0, identity: 1.0

ccggttccggcggctccgg	CRISPR spacer
ccggttccggcggctccgg	Protospacer
*******************

2. spacer 1.2|675066|19|NZ_CP017483|CRT matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 0, identity: 1.0

ccggttccggcggctccgg	CRISPR spacer
ccggttccggcggctccgg	Protospacer
*******************

3. spacer 2.1|2280815|27|NZ_CP017483|CRISPRCasFinder matches to NZ_CP033025 (Agrobacterium fabrum strain 1D132 plasmid pAt1D132b, complete sequence) position: , mismatch: 5, identity: 0.815

gtcaccagcgaatcaatcagcgacaca	CRISPR spacer
gtgaccagcgcatcaatcagcgaagcc	Protospacer
** ******* ************ .*

4. spacer 1.3|675108|31|NZ_CP017483|CRT matches to NZ_CP026653 (Streptomyces dengpaensis strain XZHG99 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
acgattccggcagctccggacccggcggcgg	Protospacer
 **.*************** *****. ** *

5. spacer 1.3|675108|31|NZ_CP017483|CRT matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.774

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
atttttccggcagctccggcgccggtcgcct	Protospacer
 .  **************** ********.

6. spacer 1.3|675108|31|NZ_CP017483|CRT matches to MT952853 (Arthrobacter phage Orcanus, complete genome) position: , mismatch: 7, identity: 0.774

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
ccggttccggtggctccggccccgactccgg	Protospacer
**********..************... * *

7. spacer 1.3|675108|31|NZ_CP017483|CRT matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
aggggccgggcagcgccggcgccggtcgctg	Protospacer
  ** .* ****** ***** **********

8. spacer 1.3|675108|31|NZ_CP017483|CRT matches to NC_049478 (Arthrobacter phage Mufasa8, complete genome) position: , mismatch: 7, identity: 0.774

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
gtggttcccgcagccccggccccggccccgg	Protospacer
 .****** *****.**********.* * *

9. spacer 2.1|2280815|27|NZ_CP017483|CRISPRCasFinder matches to NZ_AP019370 (Silvanigrellales bacterium RF1110005 plasmid 68K, complete sequence) position: , mismatch: 7, identity: 0.741

gtcaccagcgaatcaatcagcgacaca	CRISPR spacer
aagttcagcgaatcaatcagcgatact	Protospacer
.   .******************.**

10. spacer 1.3|675108|31|NZ_CP017483|CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 8, identity: 0.742

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
aatatgccggcagcatcggccccggtcgcgg	Protospacer
   .* ******** .************* *

11. spacer 1.3|675108|31|NZ_CP017483|CRT matches to NC_049478 (Arthrobacter phage Mufasa8, complete genome) position: , mismatch: 8, identity: 0.742

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
gtcgtcccggcagcaccggccccggtggttc	Protospacer
 . **.******** *********** *.*

12. spacer 1.3|675108|31|NZ_CP017483|CRT matches to MT498055 (Arthrobacter phage Bumble, complete genome) position: , mismatch: 10, identity: 0.677

ccggttccggcagctccggccccggtcgctg	CRISPR spacer
ggcaccccgggagctccggcccccgtcgccc	Protospacer
   ...**** ************ *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1460429 : 1509137

Klosneuvirus(25.0%)

plate,holin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070425904.1\|1460429_1461767_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_156785697.1\|1461770_1462541_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_070425906.1\|1462611_1463898_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_070425907.1\|1463894_1464917_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_070425908.1\|1464880_1466647_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_070425909.1\|1466653_1467082_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_070425910.1\|1467094_1468573_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_070425911.1\|1468605_1469118_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_026069868.1\|1469667_1470921_-	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA
WP_070425912.1\|1470940_1472047_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_019183771.1\|1472223_1473498_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_070427467.1\|1474134_1474818_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_046273503.1\|1474886_1475258_+	hypothetical protein	NA	NA	NA	NA
WP_046273502.1\|1475293_1475617_+	hypothetical protein	NA	NA	NA	NA
WP_070425913.1\|1475647_1476424_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_070425914.1\|1476482_1477409_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_019183764.1\|1477485_1478025_-	DUF924 family protein	A0A1V0SIY0	Klosneuvirus	2.1e-18	35.1
WP_019183763.1\|1478077_1478854_-	AMP nucleosidase	NA	NA	NA	NA
WP_070425915.1\|1478964_1482546_-\|protease	autotransporter serine protease	NA	NA	NA	NA
WP_070425916.1\|1482798_1484205_+	amidohydrolase	NA	NA	NA	NA
WP_070425917.1\|1484201_1485482_+	amidohydrolase family protein	NA	NA	NA	NA
WP_156785804.1\|1485554_1486187_+	DsbA family protein	NA	NA	NA	NA
WP_046273496.1\|1486277_1487222_+	DegV family protein	NA	NA	NA	NA
WP_026069862.1\|1487334_1487673_+	hypothetical protein	NA	NA	NA	NA
WP_083279805.1\|1487645_1489151_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_070425919.1\|1489147_1490203_-	HlyD family secretion protein	NA	NA	NA	NA
WP_070425920.1\|1490220_1491762_-	MFS transporter	NA	NA	NA	NA
WP_046273490.1\|1491942_1492857_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_070425921.1\|1493005_1493452_+	universal stress protein	NA	NA	NA	NA
WP_070425922.1\|1493572_1494403_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_019183748.1\|1494451_1495561_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	7.3e-34	30.1
WP_019183747.1\|1495616_1495892_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_156785699.1\|1495977_1496394_-	hypothetical protein	NA	NA	NA	NA
WP_019183745.1\|1496497_1497382_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019183744.1\|1497488_1498547_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	2.1e-83	45.4
WP_046273486.1\|1498610_1499975_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_070425924.1\|1500182_1500881_+	VIT family protein	NA	NA	NA	NA
WP_019183741.1\|1500884_1501718_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_070425925.1\|1501813_1502791_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_019183739.1\|1502946_1503570_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_070425926.1\|1503725_1504523_+	c-type cytochrome	NA	NA	NA	NA
WP_019183737.1\|1504652_1505297_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_070425927.1\|1505419_1506247_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_172838073.1\|1506297_1507035_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_019183734.1\|1507157_1509137_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-18	26.4

DBSCAN-SWA_2

2736300 : 2748568

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070426565.1\|2736300_2737257_-	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	8.2e-26	28.9
WP_046273791.1\|2737246_2737942_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_046273792.1\|2738120_2739062_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_070426566.1\|2739061_2739808_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_070426567.1\|2740068_2741124_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-80	46.5
WP_070426568.1\|2741155_2742043_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.4e-96	58.1
WP_070426569.1\|2742039_2742597_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-47	51.9
WP_070426570.1\|2742593_2743484_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.9e-26	37.5
WP_070426571.1\|2743621_2745025_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.7e-48	29.1
WP_070426572.1\|2745040_2746390_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	3.0e-34	28.1
WP_070426573.1\|2746550_2747285_+	CoA transferase subunit A	NA	NA	NA	NA
WP_019182572.1\|2747286_2747919_+	CoA transferase subunit B	NA	NA	NA	NA
WP_070426574.1\|2747977_2748568_+	alpha-ketoglutarate-dependent dioxygenase AlkB	A0A2K9L0M4	Tupanvirus	5.2e-23	31.0

DBSCAN-SWA_3

3646826 : 3721918

Pseudomonas_phage(22.86%)

tRNA,integrase,tail,capsid,portal,protease,terminase,head,lysis

attL 3646402:3646448|attR 3688507:3688553

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3646402:3646448	attL	NA	NA	NA	NA
WP_070427018.1\|3646826_3647852_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.8e-103	59.0
WP_070427019.1\|3647853_3648066_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.2e-17	61.4
WP_070427020.1\|3648055_3648355_-	hypothetical protein	NA	NA	NA	NA
WP_070427021.1\|3648351_3648537_-	hypothetical protein	NA	NA	NA	NA
WP_070427022.1\|3648536_3650546_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	3.5e-159	48.0
WP_070427023.1\|3650983_3651574_-	hypothetical protein	NA	NA	NA	NA
WP_156785761.1\|3651570_3652287_-	hypothetical protein	NA	NA	NA	NA
WP_070427025.1\|3652283_3652823_-	hypothetical protein	NA	NA	NA	NA
WP_070427026.1\|3652815_3652998_-	hypothetical protein	NA	NA	NA	NA
WP_070427027.1\|3653116_3653353_-	hypothetical protein	NA	NA	NA	NA
WP_070427028.1\|3653349_3653589_-	hypothetical protein	NA	NA	NA	NA
WP_172838056.1\|3653785_3654307_-	DUF4468 domain-containing protein	A0A0P0I8L3	Acinetobacter_phage	7.9e-15	31.0
WP_070427574.1\|3654319_3654994_-	helix-turn-helix transcriptional regulator	A0A1B0VRI7	Pseudomonas_phage	1.0e-06	25.4
WP_156785762.1\|3655067_3655541_+	hypothetical protein	NA	NA	NA	NA
WP_070427031.1\|3655610_3656192_+	hypothetical protein	NA	NA	NA	NA
WP_070427032.1\|3656188_3656500_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_070427033.1\|3656503_3657391_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	2.1e-28	40.9
WP_070427034.1\|3657380_3658034_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.5e-26	37.2
WP_070427035.1\|3658033_3658282_+	hypothetical protein	NA	NA	NA	NA
WP_070427036.1\|3658278_3659181_+	hypothetical protein	K4JTF2	Caulobacter_virus	7.9e-63	46.1
WP_070427037.1\|3659190_3659640_+	hypothetical protein	NA	NA	NA	NA
WP_156785763.1\|3659636_3659870_+	hypothetical protein	NA	NA	NA	NA
WP_070427039.1\|3659869_3660238_+	hypothetical protein	NA	NA	NA	NA
WP_070427040.1\|3660234_3660735_+	hypothetical protein	NA	NA	NA	NA
WP_070427041.1\|3660731_3661163_+	HD domain-containing protein	D0UIJ3	Aggregatibacter_phage	4.4e-11	37.6
WP_070427042.1\|3661159_3661564_+	hypothetical protein	NA	NA	NA	NA
WP_070427043.1\|3661547_3662243_+	hypothetical protein	C8CLH7	Xylella_phage	9.7e-69	58.5
WP_070427044.1\|3662306_3662852_+	YfbU family protein	NA	NA	NA	NA
WP_070427045.1\|3663002_3663491_+	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	5.2e-69	78.4
WP_070427046.1\|3663487_3663805_+	hypothetical protein	B7SYE0	Stenotrophomonas_phage	4.3e-32	68.7
WP_070427047.1\|3663804_3664275_+\|lysis	lysis protein	NA	NA	NA	NA
WP_070427048.1\|3664271_3664496_+	hypothetical protein	A0A1V0E8A3	Vibrio_phage	3.7e-06	41.8
WP_172838057.1\|3664495_3664657_+	hypothetical protein	NA	NA	NA	NA
WP_070427049.1\|3664656_3665013_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	4.0e-26	52.8
WP_070427050.1\|3665174_3665603_+	hypothetical protein	NA	NA	NA	NA
WP_083279881.1\|3665595_3667287_+\|terminase	terminase large subunit	A0A0U4B0M7	Pseudomonas_phage	4.6e-213	64.4
WP_070427052.1\|3667283_3668576_+\|portal	phage portal protein	G0ZT36	Aeromonas_phage	7.4e-147	62.5
WP_070427053.1\|3668579_3669446_+\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	3.0e-75	51.9
WP_070427054.1\|3669457_3670669_+\|capsid	phage major capsid protein	A0A2H4PI18	Pseudomonas_phage	4.2e-128	61.9
WP_070427055.1\|3670723_3671083_+	hypothetical protein	NA	NA	NA	NA
WP_070427056.1\|3671086_3671428_+\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	1.8e-23	51.8
WP_070427057.1\|3671490_3671694_+	hypothetical protein	NA	NA	NA	NA
WP_070427575.1\|3671693_3672026_+\|head	phage head closure protein	K7PH08	Enterobacteria_phage	6.7e-36	66.4
WP_070427058.1\|3672018_3672555_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	5.2e-38	47.1
WP_070427059.1\|3672551_3672917_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	2.3e-37	57.9
WP_070427060.1\|3672987_3673704_+\|tail	phage tail protein	Q9MCU9	Escherichia_phage	4.5e-45	42.9
WP_083279882.1\|3673700_3674120_+\|tail	phage tail assembly chaperone family protein, TAC	K7PJU9	Enterobacteria_phage	2.9e-36	65.5
WP_070427061.1\|3674149_3674416_+\|tail	phage tail protein	Q9MCU7	Escherichia_phage	8.3e-21	56.5
WP_070427062.1\|3674422_3676921_+\|tail	phage tail length tape measure family protein	A0A286S1S3	Klebsiella_phage	3.4e-31	24.9
WP_083279883.1\|3676920_3677379_+	hypothetical protein	NA	NA	NA	NA
WP_070427577.1\|3677375_3677858_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.7e-51	63.1
WP_070427063.1\|3677854_3678232_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.4e-24	45.9
WP_156785764.1\|3678228_3681156_+	kinase	A0A286S259	Klebsiella_phage	4.4e-248	48.8
WP_156785765.1\|3681316_3684124_+	hypothetical protein	J7HXC9	Pseudomonas_phage	4.1e-09	25.7
WP_070427065.1\|3684107_3685244_-	acyltransferase	NA	NA	NA	NA
WP_070427066.1\|3685310_3685976_-	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	4.3e-98	79.2
WP_070427067.1\|3686083_3686434_+	hypothetical protein	NA	NA	NA	NA
WP_070427068.1\|3686665_3686968_+	hypothetical protein	NA	NA	NA	NA
WP_156785766.1\|3687586_3688291_+	hypothetical protein	NA	NA	NA	NA
WP_070427071.1\|3688685_3690185_+	AAA family ATPase	NA	NA	NA	NA
3688507:3688553	attR	NA	NA	NA	NA
WP_083279886.1\|3690198_3692229_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_070427073.1\|3692380_3692842_+	BLUF domain-containing protein	NA	NA	NA	NA
WP_019183363.1\|3693122_3693371_+	hypothetical protein	NA	NA	NA	NA
WP_070427578.1\|3693425_3694439_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_070427074.1\|3694513_3694807_-	hypothetical protein	NA	NA	NA	NA
WP_037553174.1\|3694995_3695433_+	group III truncated hemoglobin	NA	NA	NA	NA
WP_070427075.1\|3695477_3696887_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_070427076.1\|3697266_3698280_+	TraB/GumN family protein	NA	NA	NA	NA
WP_070427077.1\|3698389_3698845_+	BLUF domain-containing protein	NA	NA	NA	NA
WP_070427078.1\|3699148_3700435_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_019183355.1\|3700466_3702089_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_156785767.1\|3702085_3702565_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_070427079.1\|3702669_3703917_-	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_019183352.1\|3703927_3704368_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_019183351.1\|3704435_3704801_+	hypothetical protein	NA	NA	NA	NA
WP_046273691.1\|3704850_3705603_+	sulfurtransferase	NA	NA	NA	NA
WP_070427080.1\|3705741_3706734_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_070427081.1\|3706831_3707341_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_019183347.1\|3707439_3708099_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_026069803.1\|3708082_3709393_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_019183345.1\|3709674_3710301_+	DUF47 family protein	NA	NA	NA	NA
WP_019183344.1\|3710314_3711436_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_070427580.1\|3711553_3712141_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046273688.1\|3712249_3714139_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.5e-91	34.8
WP_070427082.1\|3714302_3714542_+	hypothetical protein	NA	NA	NA	NA
WP_156785768.1\|3714663_3714924_+	hypothetical protein	NA	NA	NA	NA
WP_070427084.1\|3714920_3716585_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.6e-140	48.6
WP_019183338.1\|3716690_3717521_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.5e-52	42.7
WP_026069801.1\|3717517_3717934_+	hypothetical protein	NA	NA	NA	NA
WP_070427085.1\|3718003_3719290_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.6e-141	60.3
WP_019183335.1\|3719294_3719645_+	cell division protein FtsB	NA	NA	NA	NA
WP_026069800.1\|3719641_3720340_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_019183333.1\|3720377_3720875_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_070427086.1\|3720871_3721918_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017483

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection