CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049978	Bacillus sp. RZ2MS9 chromosome, complete genome	4 crisprs	cas3,c2c9_V-U4,PrimPol,csa3,WYL,DinG,cas14k,DEDDh	0	2	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049978_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049978_1

4590453-4590560

Orphan

Consensus_repeat	Method
GTTGTTCTTCTGCGACTGGCGCTTCTTCTACAACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049978_1

>merge|NZ_CP049978|1|4590453-4590560|CRISPRCasFinder
CTTCTTTTTGTACAACTGGTTGTTCTTCTGCGACTGGCGCTTCTTCTACAACTGATTGCTCTTCTACGACCGGTGCTTCTTCTACAACTTGTTGCTCTTCTGCGACTG

>NZ_CP049978|1|1|4590453-4590560|CRISPRCasFinder
CTTCTTTTTGTACAACTGGTTGTTCTTCTGCGACTG	GCGCTTCTTCTACAACTGATTGCTCTTCTACGACCG
GTGCTTCTTCTACAACTTGTTGCTCTTCTGCGACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049978.1\|WP_000494681.1\|4583531_4584080_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP049978.1\|WP_070757004.1\|4580712_4581270_-\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109
NZ_CP049978.1\|WP_000276603.1\|4585031_4585445_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP049978.1\|WP_070757005.1\|4582562_4582967_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|369049
NZ_CP049978.1\|WP_000784589.1\|4594659_4595472_-\|DUF1444-domain-containing-protein	unknown	unknown	gnl\|CDD\|237463
NZ_CP049978.1\|WP_000654731.1\|4581412_4582528_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|225191
NZ_CP049978.1\|WP_000869937.1\|4595947_4596457_-\|DUF84-family-protein	unknown	unknown	gnl\|CDD\|179541
NZ_CP049978.1\|WP_070757007.1\|4584145_4585042_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP049978.1\|WP_001006761.1\|4594048_4594663_-\|DUF4479-domain-containing-protein	unknown	unknown	gnl\|CDD\|234804
NZ_CP049978.1\|WP_000118543.1\|4597960_4598272_+\|peptidase-M4	unknown	unknown	gnl\|CDD\|227871
NZ_CP049978.1\|WP_000436862.1\|4598550_4599405_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293814
NZ_CP049978.1\|WP_000219468.1\|4585565_4586876_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP049978.1\|WP_070757006.1\|4583043_4583535_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP049978.1\|WP_070757044.1\|4596738_4597812_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP049978.1\|WP_001057469.1\|4580386_4580713_-\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|378538
NZ_CP049978.1\|WP_001239385.1\|4599474_4600128_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP049978.1\|WP_001122235.1\|4600356_4600635_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316669
NZ_CP049978.1\|WP_000874054.1\|4592489_4593437_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376559
NZ_CP049978.1\|WP_000838193.1\|4595550_4595865_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP049978.1\|WP_000658370.1\|4587128_4588247_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235953

Protein	Function_ID	Function_description	E-value
NZ_CP049978.1\|WP_000494681.1\|4583531_4584080_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.07225e-29
NZ_CP049978.1\|WP_070757004.1\|4580712_4581270_-\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	2.33731e-36
NZ_CP049978.1\|WP_000276603.1\|4585031_4585445_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.78252e-37
NZ_CP049978.1\|WP_070757005.1\|4582562_4582967_-\|PH-domain-containing-protein	gnl\|CDD\|369049	pfam06713, bPH_4, Bacterial PH domain. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown. Members of this family have a PH domain like structure.	6.09915e-11
NZ_CP049978.1\|WP_000784589.1\|4594659_4595472_-\|DUF1444-domain-containing-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	2.40205e-163
NZ_CP049978.1\|WP_000654731.1\|4581412_4582528_+\|aminopeptidase	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	4.07232e-128
NZ_CP049978.1\|WP_000869937.1\|4595947_4596457_-\|DUF84-family-protein	gnl\|CDD\|179541	PRK03114, PRK03114, DUF84 family protein.	1.12012e-112
NZ_CP049978.1\|WP_070757007.1\|4584145_4585042_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.38367e-21
NZ_CP049978.1\|WP_001006761.1\|4594048_4594663_-\|DUF4479-domain-containing-protein	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	2.32738e-55
NZ_CP049978.1\|WP_000118543.1\|4597960_4598272_+\|peptidase-M4	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	2.36433e-31
NZ_CP049978.1\|WP_000436862.1\|4598550_4599405_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.22991e-169
NZ_CP049978.1\|WP_000219468.1\|4585565_4586876_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP049978.1\|WP_070757006.1\|4583043_4583535_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.15176e-15
NZ_CP049978.1\|WP_070757044.1\|4596738_4597812_-\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	3.93793e-173
NZ_CP049978.1\|WP_001057469.1\|4580386_4580713_-\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|378538	pfam11009, DUF2847, Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.	1.73284e-49
NZ_CP049978.1\|WP_001239385.1\|4599474_4600128_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.6604e-91
NZ_CP049978.1\|WP_001122235.1\|4600356_4600635_+\|hypothetical-protein	gnl\|CDD\|316669	pfam14165, YtzH, YtzH-like protein. The YtzH-like protein family includes the B. subtilis YtzH protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved DIL sequence motif.	5.09489e-37
NZ_CP049978.1\|WP_000874054.1\|4592489_4593437_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376559	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.	1.05961e-50
NZ_CP049978.1\|WP_000838193.1\|4595550_4595865_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	8.72549e-25
NZ_CP049978.1\|WP_000658370.1\|4587128_4588247_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235953	PRK07188, PRK07188, nicotinate phosphoribosyltransferase; Provisional.	0

>NZ_CP049978.1|WP_000658370.1|4587128_4588247_-|nicotinate-phosphoribosyltransferase
MKEIELKLKGEINRLTNKTFKFDERVGEGWFSAVYFLKTREIIEEFRPKSVVTMQFFQKENAVLCGTDEVIALLQTFAKNPEELEINSLKDGDKISPFETVLTIHGPYENFGFLEGVIDGILARRTSVATNVYNVVQAARSVDKEKPVIFMGDRDDHYTQQAGDGYAAYIGGMSAQATHAMNEWWGKSGMGTMPHALIQMFNGDVVEAAKAYHKKFPEDELVVLIDYNNDVITDALRVAREFGSTLKGVRVDTSRTMIDQYFIRHPEVLGTFDPRGVNPSLVFALRKALDEEGFQHVDIVVTGGFDEKRIREFEAQNVPVDIYGVGSSLLKMNIGFTGDNVELNGKPEAKAGRKYRPNPRLERVQLEKREEM
>NZ_CP049978.1|WP_000219468.1|4585565_4586876_-|UDP-N-acetylmuramate--L-alanine-ligase
MTVYHFVGIKGTGMSSLAQILHDMKHTVQGSDYEKRFFTQTALEKRSISILPFDKNNVEEGQVIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQYTSVAVTGAHGKTSTTGLLAHVMQGAHPTSYLIGDGTGHGVENSKYFVFEACEYRRHFLSYNPDYAIMTNIDFDHPDYFADINDVFSAFQEMALQVKKGIIACGDDEELQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQVIIDDYAHHPTEINATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGELTIEDLQKRIDGAELITDTTTDVLKKHKNGVLIFMGAGDIQKFEAAYVKEVQVAEK
>NZ_CP049978.1|WP_000276603.1|4585031_4585445_-|MerR-family-transcriptional-regulator
MYKIGEVAELTGMGIHTLRYYEKLGLLPPPTRNSGIRQYTEGDVRLLKFLYSLKQTGMSLEEMAQFASDGCIIEEIRQRKEEVPAKVKKRISILTTHLERLKKQQEQLQKVVQLTEEKLEIYYGFLEGGNSEADNEK
>NZ_CP049978.1|WP_070757007.1|4584145_4585042_-|EamA-family-transporter
MKNKVYAQLLGFAIFTGGTFNASKYAVQYFEAIHIAAWRFGIAAFVMLCLLKIRKDFEVEVWRENKTYYFLLGIVGVFGFNFFFFLGMKHTEAMNGALIMATNPLVTTLLASFILREKIIKRQGIGMLLALLGVVFVLTQGSFTILQNLSFSKGDFYILLGNICWALYGVLGRKLIKTSSPIQTTTYTMTIGAIAFMIISSTQKNIVPVLEIPLLAWGAILFMAIGMSVFGYLWWNNGIAQIGAARTSLFFNLVPVVTMIISFIEGVNITLAQSVGMILVVTGVLYSSNFIQIKPKKV
>NZ_CP049978.1|WP_000494681.1|4583531_4584080_-|GNAT-family-N-acetyltransferase
MFTLRVDDEIELQLLEKHHKEELYQLLDQNRNHLRKWLPWVDGTKSADAYDEIFPMWLKKFAEGDGFESGIRYKGKLVGMVGIHPVSWGKKATSLGYYLAEDAGGKGIMTRSVKAVLHYAFENLKLNKIEIRCGVGNAKSRAIPERLGFKLDGILRDEEWLYDHFHDIAVYSLLASEWKEIR
>NZ_CP049978.1|WP_070757006.1|4583043_4583535_-|GNAT-family-N-acetyltransferase
MNEKIRIIPYESTFQEEVVDLIVHIQQKEYNVSITKEEQPDLLEIETFYQKDYGNFWIAIYDGKVVGTVALLDIENHQVALRKMFVKKEFRGKEWGASHMLLQTAISWAEDKKLKDIYLGTTVKFLAAHRFYEKNGFESVSIDKLPKNFPVLQVDKKFYRYIV
>NZ_CP049978.1|WP_070757005.1|4582562_4582967_-|PH-domain-containing-protein
MNFPIQRSKSVVIFVCLTLAFMFIYPIVMLFTNKAHWMSALIGMGVCFIVNVPLVWEVFIKKHKVENGVLKYGILNDDIVLKDVRIIRQVGKSLEITTNAYKVHIVAMPQNMDEFLGLIEKENPHVKIEMVGKK
>NZ_CP049978.1|WP_000654731.1|4581412_4582528_+|aminopeptidase
MKDPRIEKLAYNLINYSIRLQKGEKVLIENFGLQKELVTALVKEAYAAGGFPFVSLKDHQVDRSLLMGATEEHFEQIAAYEASVMKDMDAYIGLRSGDNINEQADVPSERMKVHGQTVGKKVHRDIRVPKTRWVVLRYPNASMAQLAKMSTEAFEDFYFEVCNLDYGKMDKAMDSLVTLMNKTDKVRLTGPGTDLTFSIKDIPAIKCSGHLNIPDGEVYSAPVRDSVNGTVSYNTPSPYNGYTFENVQLKFENGQIVEATANDTERINKIFDTDEGARYVGEFAIGVNPYILHPMGDILFDEKIDGSFHFTPGQAYDDAWNGNNSNIHWDLVCIQRPEYGGGEIYFDDVLIRKDGRFVVPELEALNPENLK
>NZ_CP049978.1|WP_070757004.1|4580712_4581270_-|DUF948-domain-containing-protein
MYNRRKYEKDKGSDEMQVLLYVSAAIIAVAFAVLVVYVCRTLLSVQKTLENVASTLEGLEKQMQGISVETEQLLHKTNALADDIHQKSQSLNKVVAGVDGIGTTIQSLNTKLRNVSDSVTDEIENNADKVAQVVQWSSAAIEVYNHYRASRQEKKVEKEERKLERIEKKAEKKEKRSRFRMRGES
>NZ_CP049978.1|WP_001057469.1|4580386_4580713_-|bacillithiol-system-redox-active-protein-YtxJ
MNMTKLETIEELEVLVEKNEPYVLFKHSTTCPISHGAYTEFQAYCSEEREVPAYYLYVQDARDVSNRVAEQYSIRHESPQVLYIKDGMVVWNTSHWNIKKDALEENIK
>NZ_CP049978.1|WP_000874054.1|4592489_4593437_-|N-acetylmuramoyl-L-alanine-amidase
MKYIKIMSMIAFIGIYMAGCSQGQPKKETTSSIQEKNKDTKEDAPVEKQQEKNEESQAIQTNEQVEHKQEEVSSDEKKEETTPVQPTEQPVQNNEQKVESNEKQEKFLVVIDPGHQQKANLNLEPIGPGATTQKYKVTDGTTGVVTKKREAVLVLEMAFLLKEKLEAKGIQVLMTRTSQDVDISNKERATFANNHKANLFLRLHADGSENPNQSGFAVLTPAEGSPYTKEIYAESLQISQTIVNKMRENQQVKVNGIKFRDDLSGFNWSKVPGVLLELGFMSNPEEDKKLSDSQYVNSLLQSVTDSVDEYRKSKA
>NZ_CP049978.1|WP_001006761.1|4594048_4594663_-|DUF4479-domain-containing-protein
MNEVNVFYNLEGIGDTLIVALQDITLENRTFDRKGDVARVYDRESNETAGFNIFNASSYLEVKETGNLTLTKELVEKINEILAKNGFEETVEADLSPKFVVGYVAEKEKHPNADKLNICKVEIGTETLQIVCGAPNVDAGQKVVVAKIGAVMPSGMLIKPAELRGVPSSGMICSARELELPDAPQEKGILVLEDSFEVGQEFKF
>NZ_CP049978.1|WP_000784589.1|4594659_4595472_-|DUF1444-domain-containing-protein
MKMTSKKMKDELIKKLSRPEWDFQYDSEKEVLRIEQKESKKGINVSLPGVVAKWEVNKEKAIEEVAYYVQEALIAMHKEENSGAKILPVIRSTSFPKQAEEGNPFIMTDHTAETRIYYALDSNKTYRLIDERLLQKLELTEQQVREMALFNARSLGYEFKQDTVAGNTFYFLNTNDGYDATRILNESLLQSMREKISGDMVVAVPHQDVLIIADIVNEIGYDIIAQMTMKFFAEGHVPITSLSFVYEDGEFEPIFILAKNRKKTDGKEKG
>NZ_CP049978.1|WP_000838193.1|4595550_4595865_-|thioredoxin-family-protein
MKSLESMEQFQQLKNEENVVFMFSAEWCPDCRFVDPFMPEVEEKYSDFSFYYVDRDEFIDLCVKLDVFGIPSFVAYNKGEETGRYVNKDRKTQEQIEEFIEGLK
>NZ_CP049978.1|WP_000869937.1|4595947_4596457_-|DUF84-family-protein
MKVVVGSKNKTKVGAVEKVWKDAEITSLSVPSGVSAQPFSDEETMQGAINRAKRALEDGEAPIGIGLEGGVMKTEHGLFMCNWGALATSDGKVFVAGGARITLPDDFLAPLEDGKELSEVMEEFVQRKDIRSHEGAIGIFTDDYVDRTELFVHVVKLLVGQYKYDKKQA
>NZ_CP049978.1|WP_070757044.1|4596738_4597812_-|M42-family-metallopeptidase
MNKETLQLFRTLTELQGASGFEHDVRRFMKQELSKYADEIVQDGLGSVFGLKKGDEIGPRVLVAGHMDEVGFMITQITKNGMLRFQTLGGWWSQVLLAQRVQVMTKNGPVIGVVGSIPPHLLSDAQRAKPMDIKNMLIDIGADSYEDAIEIGVKPGQQIVPICPFTPMANEKKIMAKAWDNRYGCGLAIELLKELKDETLPNTLYSGATVQEEVGLRGAQTAANMIQPDIFYALDASPANDASGDKTQFGQLGKGALLRIYDRTMVTHRGMREFILDTAETSNIPYQYFISQGGTDAGRVHTSNSGIPSAVIGVCARYIHTHASILHVDDYAAAKELITKLVRTTDKTTLETIKNNA
>NZ_CP049978.1|WP_000118543.1|4597960_4598272_+|peptidase-M4
MSWKGLVAGLGVGFAAGYLVANKVQEQSHISSEKALKMVKQALSHKGEITGSWVHMVPETFEKYDVAYEVYRGGLTTMLNDIQERFEFLVDAKTGTVLEVIAA
>NZ_CP049978.1|WP_000436862.1|4598550_4599405_-|MBL-fold-metallo-hydrolase
MEQLQIGDIKVTWLKGGNTHLDGGAMFGVVPKVLWSRKYKHNDTNHIYLRTDPLLLQTKDGNMLIDSGIGNGKLNEKMKRNQGVTEESSVYESLEKLGLKPEDIHYVLMTHLHFDHASGLTKWEGDHLVPAFPNAKVYVSETEWNEMRNPNIRSRNTYWKENWEPIVDQVVTFQQEIEITDEIKMVHTGGHSDGHAVIALESHGETMLHLADLLPTHAHQNVLWVMAYDDYPMTSIENKQKWMKYGAEKEAWFTFYHDAYYRAVKWNEEGHIVEKVERKTSIEA
>NZ_CP049978.1|WP_001239385.1|4599474_4600128_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRHKPYAMDRINEYSHIVIGNPEERAGSWKEVFGNEQPIHIEVGTGRGRFMYDMAKANPHINYIGIEKFTSVVVDALDKLIEEELPNLKLINKDAEDLTVFFAKGEIDRVYLNFSDPWPKKRHTKRRLTYKTFLRNYEEVLVEGGEIHFKTDNQGLFEYSLMSMAEYGMLLTYLSLDLHNSDFEGNIMTEYEEKFSSKGHRIYRVEAKYRTEPMQ
>NZ_CP049978.1|WP_001122235.1|4600356_4600635_+|hypothetical-protein
MPINQQHQLEVLKDILVNHQSDCCGTVSECEQLERLIQSLLANDNISSDAKTMLNDVYSYSQSGKSSSNLDNHISNNQEQLTQWIAGMDNFS

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Crispr_ID: NZ_CP049978_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049978_2

4990808-4990912

Orphan

Consensus_repeat	Method
AAAGCGAAAGCGGCTCGTTCAGAATCGCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049978_2

>merge|NZ_CP049978|2|4990808-4990912|CRISPRCasFinder
AAAGCGAAAGCGGCTCGTTCAGAATCGCAGGGCGAAGCGACCGGAGATTCTAGCCGATGGAGCTGGATATACTAAAAGCGAAAGCGGCTCGTTTAGAATCGCAGG

>NZ_CP049978|2|2|4990808-4990912|CRISPRCasFinder
AAAGCGAAAGCGGCTCGTTCAGAATCGCAGG	GCGAAGCGACCGGAGATTCTAGCCGATGGAGCTGGATATACTA
AAAGCGAAAGCGGCTCGTTTAGAATCGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049978.1\|WP_001190080.1\|4994372_4994831_-\|8-oxo-dGTP-diphosphatase	unknown	unknown	gnl\|CDD\|239519
NZ_CP049978.1\|WP_000138459.1\|4993470_4994352_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP049978.1\|WP_070757710.1\|4996032_4996989_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP049978.1\|WP_000215909.1\|4988881_4989088_+\|DUF1657-domain-containing-protein	unknown	unknown	gnl\|CDD\|377932
NZ_CP049978.1\|WP_000216166.1\|4986214_4986421_+\|DUF1657-domain-containing-protein	unknown	unknown	gnl\|CDD\|377932
NZ_CP049978.1\|WP_000517720.1\|4997074_4998586_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP049978.1\|WP_001255073.1\|4998725_4999238_-\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP049978.1\|WP_000938972.1\|4987506_4988523_+\|stage-V-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|183504
NZ_CP049978.1\|WP_000621763.1\|4985198_4985840_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP049978.1\|WP_000250307.1\|4991202_4991451_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|172320
NZ_CP049978.1\|WP_000018924.1\|4989108_4989978_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP049978.1\|WP_000095399.1\|4987029_4987506_+\|stage-V-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131885
NZ_CP049978.1\|WP_000712186.1\|4992513_4993467_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP049978.1\|WP_000455196.1\|4995060_4995867_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_CP049978.1\|WP_001049162.1\|4990218_4990800_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP049978.1\|WP_070757712.1\|4982876_4985195_+\|competence-protein-comp	unknown	unknown	gnl\|CDD\|226951
NZ_CP049978.1\|WP_000575919.1\|4988519_4988870_+\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|131886
NZ_CP049978.1\|WP_001228546.1\|4986514_4987000_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049978.1\|WP_002097946.1\|4999271_4999922_-\|pyrophosphatase-PpaX	unknown	unknown	gnl\|CDD\|237336
NZ_CP049978.1\|WP_000006560.1\|4991474_4992425_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194

Protein	Function_ID	Function_description	E-value
NZ_CP049978.1\|WP_001190080.1\|4994372_4994831_-\|8-oxo-dGTP-diphosphatase	gnl\|CDD\|239519	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.	6.92141e-44
NZ_CP049978.1\|WP_000138459.1\|4993470_4994352_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	5.11752e-176
NZ_CP049978.1\|WP_070757710.1\|4996032_4996989_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	6.91201e-155
NZ_CP049978.1\|WP_000215909.1\|4988881_4989088_+\|DUF1657-domain-containing-protein	gnl\|CDD\|377932	pfam07870, DUF1657, Protein of unknown function (DUF1657). This domain appears to be restricted to the Bacillales.	5.34441e-15
NZ_CP049978.1\|WP_000216166.1\|4986214_4986421_+\|DUF1657-domain-containing-protein	gnl\|CDD\|377932	pfam07870, DUF1657, Protein of unknown function (DUF1657). This domain appears to be restricted to the Bacillales.	4.97569e-13
NZ_CP049978.1\|WP_000517720.1\|4997074_4998586_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.78731e-10
NZ_CP049978.1\|WP_001255073.1\|4998725_4999238_-\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.89258e-29
NZ_CP049978.1\|WP_000938972.1\|4987506_4988523_+\|stage-V-sporulation-protein-AD	gnl\|CDD\|183504	PRK12404, PRK12404, stage V sporulation protein AD; Provisional.	0
NZ_CP049978.1\|WP_000621763.1\|4985198_4985840_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.35513e-47
NZ_CP049978.1\|WP_000250307.1\|4991202_4991451_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|172320	PRK13782, PRK13782, HPr family phosphocarrier protein.	6.96077e-48
NZ_CP049978.1\|WP_000018924.1\|4989108_4989978_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	8.5691e-68
NZ_CP049978.1\|WP_000095399.1\|4987029_4987506_+\|stage-V-sporulation-protein-AC	gnl\|CDD\|131885	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	1.89481e-74
NZ_CP049978.1\|WP_000712186.1\|4992513_4993467_-\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	8.77157e-154
NZ_CP049978.1\|WP_000455196.1\|4995060_4995867_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	2.5022e-55
NZ_CP049978.1\|WP_001049162.1\|4990218_4990800_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.10358e-148
NZ_CP049978.1\|WP_070757712.1\|4982876_4985195_+\|competence-protein-comp	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.38913e-38
NZ_CP049978.1\|WP_000575919.1\|4988519_4988870_+\|stage-V-sporulation-protein-AE	gnl\|CDD\|131886	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE. This model describes stage V sporulation protein AE, a paralog of stage V sporulation protein AC. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAE have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	2.41747e-47
NZ_CP049978.1\|WP_002097946.1\|4999271_4999922_-\|pyrophosphatase-PpaX	gnl\|CDD\|237336	PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.	3.16265e-147
NZ_CP049978.1\|WP_000006560.1\|4991474_4992425_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	1.80531e-156

>NZ_CP049978.1|WP_001049162.1|4990218_4990800_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR
>NZ_CP049978.1|WP_000018924.1|4989108_4989978_+|DUF421-domain-containing-protein
MSHLPEWTLVILRSVFILIILFAITKWLGKRQISQLSFFEYIAGMTIGDIAAQVSTGLDSKFFHGVFAILIFAVVPFLTGILSLKNKTARDFFEGKSTVLIKDGKILEDNLKKEKYTSDELLELLRGKSAFSVAEVEFAVLEPSGELNVLLKKDSQPLTAKDIGLKVPNEKEPQTVIMDGNVLDEPLSASGHNRAWLHSELEKLGVVIENVFLGQVDSYGQLTIDIYNDKLQMPSPQNKPLLLASLKKCHADLELFSLETKSKSASEMYSKNAKQIEKILNKVTYLLKD
>NZ_CP049978.1|WP_000215909.1|4988881_4989088_+|DUF1657-domain-containing-protein
MTVIASVKTCLASVRGAQASLSSLSLNSQDEESKRVFHECMLEMDSVIADLKDRISVLEREEPQYKGF
>NZ_CP049978.1|WP_000575919.1|4988519_4988870_+|stage-V-sporulation-protein-AE
MIFFWAFVIGGLICVIGQLMFDVGKLTPAHTMATLVVAGAILDGFNLYEPLIDFAGAGATVPITSFGNALVHGAMEEAAKHGIVGVITGMFKVTSAGVSAAIIFGFIGALLFKPKG
>NZ_CP049978.1|WP_000938972.1|4987506_4988523_+|stage-V-sporulation-protein-AD
MLQGHRTWVFENKPVIISTGVVGGPFEAKGNIPEDFDILHEDLWLGQDSYEKAHKILFEEACSRATEKAELRKDDIQFVLAGDLINQITPTSFACRTLGTPYLGLFGACSTSMEGLALGASIVNAKGAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAILSDTGHGPRVTSATIGRVVDMGLTDPFNMGGAMAPAAVDTIEAHLRERQIDASYYDLIVTGDLGHVGREIAYDLLHKHGTKVTSEQFQDCGIIIYREGQPVIAGASGPGCSATVVYGHLLNRMKRGEFKKILVVATGALLSPLTFQQEETIPCIAHAVSIEFGGATQ
>NZ_CP049978.1|WP_000095399.1|4987029_4987506_+|stage-V-sporulation-protein-AC
MSSKDKNLTPVQQEYKKFEQEREPKRPVLKNCIKAFFVGGFICFIGQLISTFYITYFDFTERSAGNPTVATLIFISMLLTGFGIYDRFGQFAGAGTAVPVTGFGNSVIAACIEHRTEGFVLGVGGNMFKLAGSVILFGVFSAFVIALIKTILVQWGGL
>NZ_CP049978.1|WP_001228546.1|4986514_4987000_+|hypothetical-protein
MRKLGLITALFALLFSSFTGCDNSPLDKKVKEEAKRTEKEKGPKLTKTSTESFNQSISQGAKKRALAMDEIIKSTAVNSNLDLYIAVTPEHHERFGLKPLRSKLQKQLSDEHPTFDVRVSTDKKIFMLLEKLERKIKEKEVSKDEINKQLKFIGKKMESNT
>NZ_CP049978.1|WP_000216166.1|4986214_4986421_+|DUF1657-domain-containing-protein
MTVITKLKQTVSGLKSAQASLEGFALDTDNQQAKQLFQTAAQQTQTIIDSLNPRVEEVQQEEPQYSQQ
>NZ_CP049978.1|WP_000621763.1|4985198_4985840_+|response-regulator-transcription-factor
MIRVLIVDDHQIVGEGTKNMIELEEDMQAEYILNEQEALIKSDATPFDVYLLDMNMPNCSGIELAQKILHIQTDAKIILYTGFEYVSQFNLLINSGISGIISKSASQQELLMAIRAAVNGYTLLPISLLRQLRTDDITTQQLENKTALLTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGILKVHI
>NZ_CP049978.1|WP_070757712.1|4982876_4985195_+|competence-protein-comp
MQIQRNFVFISCVTIMYFCLQGYILYKINQPYSGVLISKTDSATYTIAKIKSSGWAFHTDLKEGDIIYSINKEKPHLGILPGYQNQSLNASEIQVKKDDITQTYKGTQHFIDYRDKIISVYFPFLLAFICLGLSIFLYTKKPLNRETFFLITFLFMTSSSLLIAVESGKGDFIALIILSIVFQGTPMSLILLLNELFKKKQLYVISMRFLKIDIAIGIILLSLSILMMFIPFPVVNTDGLELIYLSINIIFCIYFLIRAYIKYHNTVHKPFLKLMLTIHSIAFFPFVTLYALPDAIFSTPILSADIGAMFLIALPIGYFYLVATKQIFDIDFVFDRLRYYAFLSLIPTLLIAIITSWSIYYKDNFLSRLLQSFIIIFPLNILFLILKERLDFTFRNHLFRTKTNLYVNIEQFTAQLSSIMKTEELEKKFTNEIVSMLKPSFIQFVQYNMKDNTYTQCNGYGQTKDFTLSKKKKWSMAALLINDLLEDDGCIGIYLYSTKHIKHYIWIGTKVNNIKYNTHEKSWFITVTTYVRLIYENLYTINEIIHSLEQESLESKTNSASLSRLLFQISEQERRRLASDLHDSALQDQIVWYRKLDSLLKNKSVPLELKNELKKIHFGMHDVIQQIRDTCNELRPSLLSDAGLIGALRELLAQTQLRVQFQIQFDHESIQEHHYDFDKILSLYRIIQELLTNADKHSEATIVSIFLWEENNCIFLDYRDNGKGFNIDTPYSPNQHMGLSGIKGRLQSIGGEIHIVSEAKKGLQINITVPRW
>NZ_CP049978.1|WP_000250307.1|4991202_4991451_-|HPr-family-phosphocarrier-protein
MVQKRVQVSLKNGLQARPAALFVQEANRFHADIFIEKDGKTVNAKSIMGIMSLAIGTGSMITITTEGSDAEEALEALAAYVQ
>NZ_CP049978.1|WP_000006560.1|4991474_4992425_-|DNA-binding-protein-WhiA
MSFASETKKELTNLEMKECCEKAELSALLRMNGSLSFSNRRLSIDIQTENAAIARRIYTLLKKGYDVTVELLVRKKMRLKKNNVYIVRLVEKSREILADLHIVRDDFSFIRNISQELIEKKCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYKEHNDAICELMNGFDLNSKTLERRKGYITYLKEAEKITEFLNIIGAHNALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAALRQIENIRYIDETVGLDILPDKLQEIAQLRRDYQDVTLKELGEMVSGGKISKSGINHRLRKIDEIAEKLRAGETVAKK
>NZ_CP049978.1|WP_000712186.1|4992513_4993467_-|YvcK-family-protein
MKKERKPKIVIMGGGTGLSVLLRGLKQYPVDITAVVTIADDGGSSGRLRDELEIPPPGDIRNVLVALSDVEPLVEALFQHRFTTGDGLKGHALGNLLLAGMTSITGDFFHAITETSKVLNVRGRVLPAANQSAVLHAELEDGEIVTGESKIPYYGKKINRVFLTPEDVEPLHETLAEIKRADLLVFGPGSLYTSILPNLVVNKIGDAVLAAKAKKVYVCNVMTQAGETMGYTAFDHVQALHDHLGQPFINTAIVNNREIPCELRKLYDEEMSTPVVVDEERFVENNIDVIQEGLAKYDDHVVRHDTLKLASILYSLL
>NZ_CP049978.1|WP_000138459.1|4993470_4994352_-|RNase-adapter-RapZ
MTENNDIKMVIITGMSGAGKTVALQSFEDLGYFCVDNLPPMLLPKFIELMADSKGKMNKVALGIDLRGREFFEHLWGALDDLSERTWIIPHILFLDAKDSTLVTRYKETRRSHPLAPTGLPLKGIEAERNLLTDMKARANIVLDTSDLKPKELREKIVHLFSTETEQAFRVNVMSFGFKYGIPIDADLVFDVRFLPNPYYIPHMKPLTGLDEEVSSYVLKFNETHKFLEKLTDLITFMLPHYKREGKSQLVIAIGCTGGQHRSVTLTEYLGKHLKPEYSVHVSHRDVEKRKGH
>NZ_CP049978.1|WP_001190080.1|4994372_4994831_-|8-oxo-dGTP-diphosphatase
MQRVTNCVLIRDNEVLLLQKPRRNWWVAPGGKMERGETVRDSVVREYREETGIYLKNPALKGVFTFVIQEGDKVVSEWMMFSFLATDFAGENKLESEEGIIGWHTFDKIDDLAMAPGDYHIIDYLIKGNGIIYGTFVYTPDFELLSYRLDPS
>NZ_CP049978.1|WP_000455196.1|4995060_4995867_-|DUF368-domain-containing-protein
MEWRNIYRGFCMGVSDLIPGVSGGTIAVVLGIYEQLLAAISGFFSREWKKHLGFLIPLAAGVAAAFLTLSHVIKYLLANHYEPTQFFFLGLIISILPMLMREADAKSSFKGKHIVLLIVAAILVAITAFFKPDKAADPITTLTILNAIGLFFAGWMASMAMLLPGISGSFILLIIGVYPTAINALTTLNLPLIVVIGAGVMVGFVVSSKGISFLLDRYKSMTFAAIIGLVIGSIVIVFPGIPTGGFSIISSIITFILGFAIVTYFGKK
>NZ_CP049978.1|WP_070757710.1|4996032_4996989_-|thioredoxin-disulfide-reductase
MSEEKIYDVVIIGAGPAGMTAAVYTSRANLSTLMLERGIPGGQMANTEDVENYPGYESILGPDLSNKMFEHAKKFGAEYAYGDVKKVIDGKEYKTIIAGKKEYKARAIIVASGAEYKKIGVPGEAELGGRGVSYCAVCDGAFFKGKELIVIGGGDSAVEEGVFLTRFASKVTIVHRRDTLRAQKILQDRAFQNEKVDFIWNHTIKEINEASGKVGSVTLVDVNSGEEKEVKTDGVFVYIGMLPLSKPFVELGITNENGYLETNERMETKIPGIFAAGDVREKMLRQIVTATGDGSIAAQSAQHYVEELLEELKTVSEK
>NZ_CP049978.1|WP_000517720.1|4997074_4998586_-|tetratricopeptide-repeat-protein
MGKNQRIYKENGQVISFNQLADFFYKKGMRAYKGQKLQDAIKYFRRAAQSEKEPFILCQLASVLSEAGEYQESNQIFLKLVRSNPELEQCYYFIANNYAYMGLFQQAKKYADRYLEVAKEKEFVEDTLELLEIMEEEAMGAEEIEDEDDLIVMQEEANRYIRNGQLEEAIATLEIVTKDYPEFWSGHNNLAIAHFQSGNVDKALKLTEMILEKNPGNIHALCNTLIFLYSIGEHKQVEALAGQLVSVYPISFEHRLKLGTTLATIGYFEHAYKWFKLLKRQGYEGDVSFYYWFAYSAYMVKDQQLAEKMWQYVVELHPDKKGKEPWNALNLADEGQNVLFEELRKSFQQSATLEEQMLALYLMNELSTPEKVGFFFDITQAKNGVPIVSQLAKYFFLLNSHKSIPADLQQFEQCARIADALYNYTKKDDELIEECLHFWFCTFIRLYTSGDIFTNVYGWSAAIEYIVRGEQGNKMTQSELGDVYNVSVATVRKYVQAVKRTHT
>NZ_CP049978.1|WP_001255073.1|4998725_4999238_-|acyltransferase
MRRTTRYPVSGENSLWNVYKTVSFWKVMKNFIIIQIARYTPFLSVKNWLYRTFLRMKVGKKTSFALMVMPDIMFPEKITVGENSIIGYNTTLLAHEYLIREYRLGEIVIGNEVMIGANVTILPGVNIGDGATVSAGTLVHRDVPSGAFVGGNPMRIIYTKEQMTAREGSW
>NZ_CP049978.1|WP_002097946.1|4999271_4999922_-|pyrophosphatase-PpaX
MRINTVLFDLDGTLINTNELIISSFLHTLNTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITSYRKFNHDHHDELVEEYETVYETVRELKKQGYKVGIVTTKARQTVEMGLQLSKLDEFFDVVVTIDDVEHVKPHPEPLQKALELLDAKPEEALMVGDNHHDIVGGQNAGTKTAAVSWTLKGRAYLEAYKPDFMLDKMSDLLPILSNMNRS

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Crispr_ID: NZ_CP049978_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049978_3

5140675-5140808

Orphan

Consensus_repeat	Method
GTTGATTTCTCTTCTTTTTGAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP049978_3

>merge|NZ_CP049978|3|5140675-5140808|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGGTTCTTCTTTTTTGTCACTAGTTGAACCGCTTGTTGATTTCTCTTCTTTTTGAGACTTGTCTTCTGTTTTACTTTCTGGTTTCGTGCTCGTTGACTTCTCTTCTTTTTGAGA

>NZ_CP049978|3|3|5140675-5140808|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGG	TTCTTCTTTTTTGTCACTAGTTGAACCGCTT
GTTGATTTCTCTTCTTTTTGAGA	CTTGTCTTCTGTTTTACTTTCTGGTTTCGTGCTC
GTTGACTTCTCTTCTTTTTGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049978.1\|WP_000170864.1\|5142402_5143245_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP049978.1\|WP_070757622.1\|5135725_5136469_-\|capsular-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226453
NZ_CP049978.1\|WP_070757792.1\|5134154_5134922_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP049978.1\|WP_000672663.1\|5144531_5145551_-\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274332
NZ_CP049978.1\|WP_002005985.1\|5147101_5147812_-\|YwmB-family-TATA-box-binding-protein	unknown	unknown	gnl\|CDD\|370056
NZ_CP049978.1\|WP_000457978.1\|5138609_5139611_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237563
NZ_CP049978.1\|WP_053513724.1\|5143424_5144432_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP049978.1\|WP_000568224.1\|5151317_5153180_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP049978.1\|WP_000008901.1\|5140352_5140487_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049978.1\|WP_000544012.1\|5139771_5140044_-\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NZ_CP049978.1\|WP_044306731.1\|5132321_5133008_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775
NZ_CP049978.1\|WP_044306734.1\|5135034_5135736_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP049978.1\|WP_000931959.1\|5137748_5138183_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP049978.1\|WP_000057889.1\|5147857_5148094_-\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP049978.1\|WP_000411274.1\|5145757_5147062_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP049978.1\|WP_000367487.1\|5148296_5149817_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NZ_CP049978.1\|WP_070757617.1\|5141695_5142403_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP049978.1\|WP_070757624.1\|5133025_5133907_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP049978.1\|WP_070757619.1\|5136727_5137405_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP049978.1\|WP_070757615.1\|5149818_5151321_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622

Protein	Function_ID	Function_description	E-value
NZ_CP049978.1\|WP_000170864.1\|5142402_5143245_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.84744e-90
NZ_CP049978.1\|WP_070757622.1\|5135725_5136469_-\|capsular-biosynthesis-protein	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	1.19965e-84
NZ_CP049978.1\|WP_070757792.1\|5134154_5134922_-\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.24792e-106
NZ_CP049978.1\|WP_000672663.1\|5144531_5145551_-\|stage-II-sporulation-protein-D	gnl\|CDD\|274332	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination].	5.80584e-135
NZ_CP049978.1\|WP_002005985.1\|5147101_5147812_-\|YwmB-family-TATA-box-binding-protein	gnl\|CDD\|370056	pfam08680, DUF1779, TATA-box binding. TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).	5.16446e-34
NZ_CP049978.1\|WP_000457978.1\|5138609_5139611_-\|rod-shape-determining-protein	gnl\|CDD\|237563	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.	0
NZ_CP049978.1\|WP_053513724.1\|5143424_5144432_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.27947e-31
NZ_CP049978.1\|WP_000568224.1\|5151317_5153180_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP049978.1\|WP_000411274.1\|5145757_5147062_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP049978.1\|WP_000544012.1\|5139771_5140044_-\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	1.17272e-38
NZ_CP049978.1\|WP_044306731.1\|5132321_5133008_-\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.94834e-103
NZ_CP049978.1\|WP_044306734.1\|5135034_5135736_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	2.37435e-83
NZ_CP049978.1\|WP_000931959.1\|5137748_5138183_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	5.26499e-95
NZ_CP049978.1\|WP_000057889.1\|5147857_5148094_-\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.23409e-23
NZ_CP049978.1\|WP_000367487.1\|5148296_5149817_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	3.17734e-150
NZ_CP049978.1\|WP_070757617.1\|5141695_5142403_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.43913e-09
NZ_CP049978.1\|WP_070757624.1\|5133025_5133907_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	0
NZ_CP049978.1\|WP_070757619.1\|5136727_5137405_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	5.64394e-81
NZ_CP049978.1\|WP_070757615.1\|5149818_5151321_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	1.55594e-177

>NZ_CP049978.1|WP_000008901.1|5140352_5140487_-|hypothetical-protein
MSFLFVLSTAIILLFVLFTLYYYIAGKKEVPHHQLLEEEFEREE
>NZ_CP049978.1|WP_000544012.1|5139771_5140044_-|sporulation-transcriptional-regulator-SpoIIID
MHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
>NZ_CP049978.1|WP_000457978.1|5138609_5139611_-|rod-shape-determining-protein
MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVAIDRNSGKVLAVGEEARSMVGRTPGNIVAIRPLKDGVIADFEITEAMLKYFINKLDVKSFFSKPRILICCPTNITSVEQKAIREAAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSIKMAGDKFDMEILNYIKRKYKLLIGERTSEDIKIKVGTVFPGARSEELEIRGRDMVTGLPRTITVCSEEITEALKENAAVIVQAAKGVLERTPPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIAENPMHCVAVGTGIMLENIDRLPKRALR
>NZ_CP049978.1|WP_000931959.1|5137748_5138183_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGRLAFFAGIDNCRFKKQVRPGDQLRLEVEMTRVRGPIGKGKAIATVDGEVACEAEITFAIGDKKE
>NZ_CP049978.1|WP_070757619.1|5136727_5137405_-|CpsD/CapB-family-tyrosine-protein-kinase
MFGRKKRKPLRQLITHKEPKSRITEQYRNIRTNIEFTSVDNHVRSIIVTSADPGDGKTTTIANLAVVFGQQGKKVLLIGADLRKPTIQNLFAIHISNGLTNLLSGQAKLMQCIQKTDIENVYLMAAGPIPPNPAELLGSRAMDEALLEAYNMFDIILIDTPPVLAVTDAQILANKCDGIVLVVRSEKTEKDKIVKAKQILDKASGKLLGVILNDKREEKEQYGYY
>NZ_CP049978.1|WP_070757622.1|5135725_5136469_-|capsular-biosynthesis-protein
MEETISLKELFHILKKRLAMILVIAFGAAIVSAIISFFFMTPIYQSSTQILVNQKKQEGAAIQLGEIQSNIQLTNTYKVIIKSPVILDQVKEKLGLDLTTQDLNGKIEVVNEKDSQVVTVTAIDKDPKLARDIANTTAEVFKGEIAKIMSVDNVTVLSKAEVAENQSPIKPRPMLNVAIAFVVGLMASVGLAFLLEYLDNTVKKEEDVENLLGLPVLGIVARMDEETMNVKSHAPSSRKVRGQTIGS
>NZ_CP049978.1|WP_044306734.1|5135034_5135736_-|CpsD/CapB-family-tyrosine-protein-kinase
MALNLFKKKKNHRQRRQLIAHQQPKSPISEQYRNIRTNIEFAAVDTNLHSLMVTSANPSEGKTTTTANMAVVFAQQGKKVLLIDADMRKPAMHQMFQVDNIFGLTNVLTHSERLEKCVQTTLVDNLHFLACGPIPPNPAELLGSKSMKELLGQAYSMYDLVIFDMPPILAVTDAQIMANVCDASILVVRSESTEKETAVKAKGLLESAKGKLLGVVLNDRERENGLYYYYGAN
>NZ_CP049978.1|WP_070757792.1|5134154_5134922_-|tyrosine-protein-phosphatase
MIDLHCHILPGIDDGAQTVTDSLAMAQQAVSEGIHTIVATPHHQNGKYVNERTSIIHHVKQLNDELQQHNIPLTILPGQEVRLYGDLLEDYEAGKIVTLNETNKYIFIEFPSNHVPRYAEQLLYELRVKGMIPIIVHPERNAELIERPDKLYNLVNKGALTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMVASDAHNITSRGFHLAESYELIEKEFGMNVMSDLKENPYLLISGKAIYKEDPEQIRRKKLFGIF
>NZ_CP049978.1|WP_070757624.1|5133025_5133907_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKEVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIESGIEDIIIVTGKGKRAIEDHFDHSFELEQSLLEKGKHEMLEKVQASSKINIHYIRQKEPKGLGHAVWCARKFIGNEPFAVLLGDDIVQAETPCLRQLMDQYEGTQSSVIGVQTVPESETHRYGIIDPVEQNDRRYQVRQFVEKPAQGTAPSNLAIMGRYVLTPEIFMFLENQQTGAGGEIQLTDAIQRLNEIQRVFAYDFEGTRYDVGEKLGFIKTTIEIALQQTELKEELIDYIRALAMKENVNV
>NZ_CP049978.1|WP_044306731.1|5132321_5133008_-|sugar-transferase
MDLAKISSRDVAKEKSEEIDFEKVNSRKVYLVSKRCMDFIGALCGLIVLSPIFIVIAFLIKYEDSKGPVFFKQVRVGKNGKEFYMYKFRSMVTDAEEKLQDLLKYNEVSGAMFKMKEDPRVTRIGKFIRKTSLDELPQLLNVLKGEMSLVGPRPPLPREVKEYTQYDKQRLFVTPGCAGLWQVTERNSVGFKEMVELDLEYINKRSLSYDLKIILKTIQIMIKSNGAS
>NZ_CP049978.1|WP_070757617.1|5141695_5142403_-|ABC-transporter-permease
MTFSMRRFSAIVRKEINDAGKNSQVILMALLPILLAVFYSNMDSIKEFFAGFIIVMTITMVGSYVQAIIIAEEKEKHTLRVLMLSPASPIEVILGKSVLTVFFVLASSFISLVILDTFKGNIGMLVIIILIGTLLCVVLGTIVGLLSQNIAQTSILGLPIFIIFIMGPMLQEMVKNEFIIKVVNLLPTNHVMEALQKVIKGEGFIAIQEHILNNTIWSICLIILCIIVYKKKQLD
>NZ_CP049978.1|WP_000170864.1|5142402_5143245_-|ABC-transporter-ATP-binding-protein
MTLAIEMKDVMKSFSGKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRVLGKDITGPSSIDYKRIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLAQVNLLDDKKTPVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKDLNKEGTTIFLTTHNMDEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIQVVLKDKKKETVQKDELGAKRISEWMNKGELLSIHSHEPTLGDIFIEVTGRGL
>NZ_CP049978.1|WP_053513724.1|5143424_5144432_-|ATP-binding-cassette-domain-containing-protein
MALLELKQLGKTNQLPEIELKVEKGQCIVLQCNNHTAKVLHRIIIGEEEASTGNVLFEGEAIGKKNYFRIGFCFLKDEAYDRLKVKEYFKFLLGLYESKVSIEEVVQYVGLLDKLNVKIEKLSFSEKRRLHIGRIMIHNPDLIILEEPEQNVDIESTVIIRKAIMKMKEQGKAIFITSSFLSDALSLTEDVYILNNDGVKKVEIEQEEVEEVDEEKVVQIIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCALTLGELEARLTGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSSIPLSKGRMDELKGVIGL
>NZ_CP049978.1|WP_000672663.1|5144531_5145551_-|stage-II-sporulation-protein-D
MKFSKPLFITVALLIALVIIVPAALVIPFAKAKVGEETASKTPPAIESIPAPGKVDTAVQVAVYREKQKKVETLPVEEYVTGVVASEMNASFEIEALKAQALAARTFVVQRMLSGGKKNNADVTDTVKDQVYKSKDELKKQWGNNYENNLKKIEEAVSKTAGQVLTYDGKPISASFFSTSNGRTENAADYWGNDYPYLKSVDSPWDQASPKFTSEQTFTVADFQKRLGVKVLADGKVGNIKDLTEGKRVKDVAFQGKTLTGKEVREKLDLRSSDFTWKQQGDKIIVTTKGFGHGVGMSQYGANGMAAEGKKYTDIVAHYYKGVEIKTMNDYEGKLMVKK
>NZ_CP049978.1|WP_000411274.1|5145757_5147062_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKIIVRGGKRLNGTVRVEGAKNAVLPIIAAALLASDGKNVLSEVPVLSDVYTINEVLRHLNAEVVFENNQVTIDSSKELNIEAPFEYVRKMRASVQVMGPLLARNGRARIALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSVGATENIMSAATLAKGTTILENAAKEPEIVDLANFLNAMGAKVRGAGTGTIRIEGVDKLYGANHSIIPDRIEAGTFMVAAAITGGDILIENAVPEHLRSITAKMEEMGVKIIEENEGVRVIGPDKLKAVDIKTMPHPGFPTDMQSQMMALLLQADGTSMITETVFENRFMHVEEFRRMNADIKIEGRSVIMNGPNSLQGAEVAATDLRAAAALILAGLVSEGYTRVTELKHLDRGYVNFHKKLAALGATIERVNEKVEEVKEQEVSDLHA
>NZ_CP049978.1|WP_002005985.1|5147101_5147812_-|YwmB-family-TATA-box-binding-protein
MKLKLKAILIVALSVVLFLVGYREMKPISDEQKMESMIKALEKNDAKVEKWSWLARETKTISNIHTFQKLLNDVKEKANIQKWEVEQSPDGYKATSYKKLSSYEERVVVTWSKENTKENTFIIFEVSGAKWDPKYVQNMNKIFSEKPIIYTCVQGVLNDKIEGVLQNKTNQVLKDLSARAIEQVEERAFVSVSAYNKKWDDALSTNREKINVQIAIRSTDNKDTIVVGTPIITSEY
>NZ_CP049978.1|WP_000057889.1|5147857_5148094_-|DUF1146-domain-containing-protein
MAQLLGQQALIAIVSHLLFITITWWALQGIHIERLMKSGKVLQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK
>NZ_CP049978.1|WP_000367487.1|5148296_5149817_-|NADH-quinone-oxidoreductase-subunit-NuoN
MDMNTLLSLSWHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAIVLAIVSLITLYSEPAGDILNGSFVLDGFSKGFKTLLLGASALILCTAMSDDKKNPIEDKGEYYYLFLMALLGAMFMASSVDFITLFVGLELLSLSSYILVGIRKKSRASNEAAMKYVISGGIGTAITLFGMSYLYGITGSTNIVDMQKVLTGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKIAGFLLIIRLFLMVFASVLIQGDMQSLYGHMSIYIAVLASITMIVGNVVALKQYNIKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQNDEENITIFTGLYKRSPFAAIMMTIFILSLAGIPGTAGFIGKINIFLGALHVEPAHYVLASIMMGTTVVSFVYYFRILQQMFFRTGETEERIRLPLNIKVVMSLCAISIVILGIMPMIGYNFFYEYFPLMKDFFFLGNVVQ
>NZ_CP049978.1|WP_070757615.1|5149818_5151321_-|NADH-quinone-oxidoreductase-subunit-M
MNDLLLTFFIFSPLLGILLLVLTPKKELRTVRALGLFGTALPFGIAIVLACTYASGKNLSLFDEKVKWIKFGDFTAVDKRWFSIYYELGIDGLSLVMMVLTALLAMLAAIAAFSIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVELKEILRSVSAEGELVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAKSVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRATLQVTFGKKEWEAKSDIHGWEYVPVLLLIFCIIAIGVMPELLGDPLQNTLKTLGVK
>NZ_CP049978.1|WP_000568224.1|5151317_5153180_-|NADH-quinone-oxidoreductase-subunit-L
MIDYAWLIPLFPLVSFLLLIIFGKKIREGSSVLSIFFVFLSFILAVLVLIERFSEASVKHKWVWLRAGDVDISFGFEVTALGALMLFIVTLVSLLVHVYSKGYMKGDERLPTFYAYLGLFTFAMLGLVISTNLLQLYIFWELVGLGSFLLIGFYFFKEEAKAAAKKAFIMTRIGDVGLFIGMILIFWYAGSFEYDAIFRAIYTGDLPPYMITITAILIFIGAMGKSGQFPLHTWLPDAMEGPTPVSALIHAATMVAAGVYLVATMFPLFSASTVAMQTVAIVGAFTAIFAASIGLVQTDIKRVLAYSTVSQLGYMMLALGSAGYVAGIFHLTTHAFFKALLFLAAGSVIHAVHTQNINKMGGLQKKMKVTGTLFLIGTLAISGVPLLSGFFSKDEILAATWMNGNYVLFTLAVIAAFLTAFYMFRLYFLVFTGETKTKEEVHESPRVMTYPMIVLGVLAVVAGYINTPWFGTFLGDWLTKDVGFKVEEAHGPVWIMIVATLVSFAGIALAYFIYGKKSISRDWAGGTETSLYNLLKEKYYVDELYNMTVIPITKGIAHVLRLFEVYVVEGIAVLIGSVVKGTSNLGSKLQNGNVQVYGTVTAVSLAVLVIILLYTGGDLR

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Crispr_ID: NZ_CP049978_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049978_4

5187731-5187845

Orphan

Consensus_repeat	Method
CTTTTTATTTAATCCAGCTTCAGCAGCTAGAATGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049978_4

>merge|NZ_CP049978|4|5187731-5187845|CRISPRCasFinder
CTTTTTATTTAATCCAGCTTCAGCAGCTAGAATGGTCAGGAGTTCCAATGCCTTCCCCTTCTGAGCAAGCCACCTCCGCTTTTTACTTAATCCAGCTTCAGCAGCTAGAATGGTC

>NZ_CP049978|4|4|5187731-5187845|CRISPRCasFinder
CTTTTTATTTAATCCAGCTTCAGCAGCTAGAATGGTC	AGGAGTTCCAATGCCTTCCCCTTCTGAGCAAGCCACCTCCG
CTTTTTACTTAATCCAGCTTCAGCAGCTAGAATGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049978.1\|WP_001011179.1\|5197240_5198371_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP049978.1\|WP_000413254.1\|5189016_5190306_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_CP049978.1\|WP_000346280.1\|5194698_5195229_-\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|275360
NZ_CP049978.1\|WP_000643433.1\|5185296_5185542_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP049978.1\|WP_000887064.1\|5182891_5183959_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP049978.1\|WP_000197472.1\|5178272_5178551_-\|DUF3935-domain-containing-protein	unknown	unknown	gnl\|CDD\|372460
NZ_CP049978.1\|WP_000745063.1\|5181064_5181928_-\|stage-II-sporulation-protein-R	unknown	unknown	gnl\|CDD\|378205
NZ_CP049978.1\|WP_001131855.1\|5190638_5191496_-\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|169068
NZ_CP049978.1\|WP_000912402.1\|5192276_5192801_+\|DUF2529-domain-containing-protein	unknown	unknown	gnl\|CDD\|378487
NZ_CP049978.1\|WP_000398594.1\|5191706_5192075_-\|sporulation-initiation-phosphotransferase-Spo0F	unknown	unknown	gnl\|CDD\|381105
NZ_CP049978.1\|WP_050822179.1\|5196079_5197219_-\|acyl-CoA-dehydrogenase-AcdA	unknown	unknown	gnl\|CDD\|173847
NZ_CP049978.1\|WP_000238599.1\|5195383_5196013_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP049978.1\|WP_001053903.1\|5186190_5187462_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP049978.1\|WP_000758446.1\|5180556_5181015_-\|mechanosensitive-ion-channel-protein	unknown	unknown	gnl\|CDD\|224167
NZ_CP049978.1\|WP_000170460.1\|5192833_5194441_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP049978.1\|WP_000280859.1\|5184600_5185188_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP049978.1\|WP_000442340.1\|5187934_5188900_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP049978.1\|WP_000557351.1\|5179407_5180448_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP049978.1\|WP_000142463.1\|5178781_5179330_-\|manganese-efflux-pump	unknown	unknown	gnl\|CDD\|308338
NZ_CP049978.1\|WP_001267055.1\|5182040_5182892_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467

Protein	Function_ID	Function_description	E-value
NZ_CP049978.1\|WP_001011179.1\|5197240_5198371_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP049978.1\|WP_000413254.1\|5189016_5190306_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_CP049978.1\|WP_000346280.1\|5194698_5195229_-\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|275360	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit. Members of this family are the RNA polymerase delta subunit, as found in the Firmicutes and the Mollicutes. All members of the seed alignment have an extended C-terminal low-complexity region, consisting largely of Asp and Glu, that is not included in the model. Proteins giving borderline scores should be checked to confirm a similar acidic C-terminal domain. [Transcription, DNA-dependent RNA polymerase].	2.5161e-33
NZ_CP049978.1\|WP_000643433.1\|5185296_5185542_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.01142e-51
NZ_CP049978.1\|WP_000887064.1\|5182891_5183959_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP049978.1\|WP_000197472.1\|5178272_5178551_-\|DUF3935-domain-containing-protein	gnl\|CDD\|372460	pfam13071, DUF3935, Protein of unknown function (DUF3935). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two conserved sequence motifs: FVF and LGV.	1.86353e-30
NZ_CP049978.1\|WP_000745063.1\|5181064_5181928_-\|stage-II-sporulation-protein-R	gnl\|CDD\|378205	pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R). SpoIIR is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation.	4.04438e-67
NZ_CP049978.1\|WP_001131855.1\|5190638_5191496_-\|fructose-bisphosphate-aldolase	gnl\|CDD\|169068	PRK07709, PRK07709, fructose-bisphosphate aldolase; Provisional.	0
NZ_CP049978.1\|WP_000912402.1\|5192276_5192801_+\|DUF2529-domain-containing-protein	gnl\|CDD\|378487	pfam10740, DUF2529, Domain of unknown function (DUF2529). This domain is conserved in the Bacillales. The function is not known, but given this domains relationship to the SIS domain it may carry out a sugar isomerase reaction. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.	2.39546e-73
NZ_CP049978.1\|WP_000398594.1\|5191706_5192075_-\|sporulation-initiation-phosphotransferase-Spo0F	gnl\|CDD\|381105	cd17553, REC_Spo0F-like, phosphoacceptor receiver (REC) domain of Spo0F and similar domains. Spo0F, a stand-alone response regulator containing only a REC domain with no output/effector domain, controls sporulation in Bacillus subtilis through the exchange of a phosphoryl group. Bacillus subtilis forms spores when conditions for growth become unfavorable. The initiation of sporulation is controlled by a phosphorelay (an expanded version of the two-component system) that consists of four main components: a histidine kinase (KinA), a secondary messenger (Spo0F), a phosphotransferase (Spo0B), and a transcription factor (Spo0A). REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.77706e-64
NZ_CP049978.1\|WP_050822179.1\|5196079_5197219_-\|acyl-CoA-dehydrogenase-AcdA	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP049978.1\|WP_000238599.1\|5195383_5196013_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.60731e-13
NZ_CP049978.1\|WP_001053903.1\|5186190_5187462_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP049978.1\|WP_000758446.1\|5180556_5181015_-\|mechanosensitive-ion-channel-protein	gnl\|CDD\|224167	COG1246, ArgA, N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism].	0.00271737
NZ_CP049978.1\|WP_000170460.1\|5192833_5194441_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP049978.1\|WP_000280859.1\|5184600_5185188_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.78015e-105
NZ_CP049978.1\|WP_000442340.1\|5187934_5188900_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP049978.1\|WP_000557351.1\|5179407_5180448_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	4.55585e-93
NZ_CP049978.1\|WP_000142463.1\|5178781_5179330_-\|manganese-efflux-pump	gnl\|CDD\|308338	pfam02659, Mntp, Putative manganese efflux pump. MntP is a family of bacterial proteins with a signal peptide and four transmembrane domains. It is a putative manganese efflux pump, since deletion of the gene leads to profound manganese sensitivity and elevated intracellular manganese levels in bacteria. Manganese is a highly important trace nutrient for organisms from bacteria to humans, and acts as an important element in the defense against oxidative stress and as an enzyme cofactor.	3.25443e-39
NZ_CP049978.1\|WP_001267055.1\|5182040_5182892_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	9.93019e-117

>NZ_CP049978.1|WP_001053903.1|5186190_5187462_-|transcription-termination-factor-Rho
MNLSIAALENMKLKELYELAKEFKISYYSKLTKKELIFSILKARAEKEGFFFMEGVLEIIQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAVNGDDPDSAKERVHFPALTPLYPDRQMKLETEPKKLPTRIMDLIAPVGFGQRGLIVAPPKAGKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDVVSSTFDEVPENHIKVAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRRSGTRKEDLLIPKEHLDKLWGIRKTMRDTPDFVESFLRKLRQTKTNEEFLQNIVADSKRYVTTK
>NZ_CP049978.1|WP_000643433.1|5185296_5185542_-|type-B-50S-ribosomal-protein-L31
MKAGIHPDYKKVVFMDTNTGFKFLSGSTKGSNETVEWEDGNTYPLLKVEISSDSHPFYTGRQKFATADGRVDRFNKKYGLK
>NZ_CP049978.1|WP_000280859.1|5184600_5185188_-|thymidine-kinase
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFEHITEELDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDPIILVGASESYEPRCRHCHAVPANKDK
>NZ_CP049978.1|WP_000887064.1|5182891_5183959_-|peptide-chain-release-factor-1
MLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAKAMLEDKLDAEMREMVKEEVSELESQDKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE
>NZ_CP049978.1|WP_001267055.1|5182040_5182892_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MRVYEALKWASSFLQENGRDENAGEIVLCHVLKVNRTGLLMNMREEITEDQEKSFTEFIHKHVEGIPIQYMIGYEMFYGRSFFVNEEVLIPRPETEELIVGVLERIERHFGDEKLHVADIGTGSGAISITLALENENLHVYTVDIAQESIEVAKENAKALGAEVTFYHGDLLSPFHKTGQKLDVVVSNPPYIPEEDWRGLSPVVKEHEPKRALVGGEDGLDFYRRFMEELPNVLQKKAIVAFEIGVGQGEDVKRLLQQAFPHAHVEVVFDINGKDRMVFAEME
>NZ_CP049978.1|WP_000745063.1|5181064_5181928_-|stage-II-sporulation-protein-R
MKKQVIAYLLILLIGAQLLVQFGYMKADAKGPSVIPKEAVRLRILANSDSDKDQALKRKVRDEVKAQIDGWVADLTSFEEARKVIQSHIPEIEKTVENTLKREGSKDSFQVKFSKNVKFPTKVYGNFIYPAGEYEAVLITIGEGEGANWWCVLFPPMCFLDFSSGTAVRKEEHVVKAESPEEEQVKQLDEEVIDKEEKKVDKVKETKAVKQEVVKKVTASEKKVVKNETKVEEQPVSKEEIKTVEKVEKPVEKKQEKQNEYVKVEEEEEKPEVKLFIVEAFTSLFSK
>NZ_CP049978.1|WP_000758446.1|5180556_5181015_-|mechanosensitive-ion-channel-protein
MKKVYFATKADVERLHSFFGQANKKDDKINELYAQFMILEEAEEIRAVIGYERSGEDVLIRSCLFTPHVDKQTFLYFFEMFLQYMKEKSVQQLYLLTNHPQSVPIFQFFDFFTIEKDEVPEGIQQLEHFCKNIKEQNAIILNCQLFTKLSTD
>NZ_CP049978.1|WP_000557351.1|5179407_5180448_-|threonylcarbamoyl-AMP-synthase
MHTNMWVVDNVVERKKYYPQLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGVGVESTVIDCTSAVPTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFIQHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAGHHIIIE
>NZ_CP049978.1|WP_000142463.1|5178781_5179330_-|manganese-efflux-pump
MTFEQLIPLIIMAFALGMDAFSVSLGMGMIPLKLRQILYIGMTIGIFHIIMPFIGMVLGRFLSEKYGDIAHFAGAILLIGLGFYIVYSSILQNEETRTAPIGISLFVFAFGVSIDSFSVGLSLGIYGAQTIITILLFGFVSMLLAWMGLLIGRHAKDMLGTYGEIVGGIILVGFGLYILFPI
>NZ_CP049978.1|WP_000197472.1|5178272_5178551_-|DUF3935-domain-containing-protein
MTRLKQVFGIIISFFVFWFSMLGVQMFAEFLDIESLKFVAGKTEAARAFYSPYPFLIVFLITLLSLYFFVIKLGKPKKEKMPTLEEKKEELQ
>NZ_CP049978.1|WP_000442340.1|5187934_5188900_-|class-II-fructose-bisphosphatase
MERSLSMELVRVTEAAALSSARWMGRGKKDEADGAATSAMRDVFDTIPMKGTVVIGEGEMDEAPMLYIGEKLGTGYGPRVDVAVDPLEGTNIVAAGGWNALAVIAIADHGNLLHAPDMYMDKIAVGPEAVGAVDIDAPIIDNLRAVAKAKNKDIEDVVATVLNRPRHQEIIEEIRKAGARIKLINDGDVAGAINTAFDRTGVDILFGSGGAPEGVLAAVALKCLGGEIHGKLLPQNEAELARCKKMGIEDINRILRMEDLVKGDDAIFAATGVTDGELLRGVQFKGSVGTTQSLVMRAKSGTVRFVDGRHSLNKKPNLVIK
>NZ_CP049978.1|WP_000413254.1|5189016_5190306_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKLLIEGGRALNGTIRVSGAKNSAVALIPATILADTPVTIGGVPNISDVKMLGDLLEEIGGKVTYGQEEEMVVDPSNMVAMPLPNGKVKKLRASYYLMGAMLGRFKKAVIGLPGGCHLGPRPIDQHIKGFEALGAHVTNEQGAIYLRADELRGARIYLDVVSVGATINIMLAAVRAKGRTVIENAAKEPEIIDVATLLTSMGARIKGAGTDVIRIDGVDSLHGCHHTIIPDRIEAGTYMILGAASGGEVTVDNVIPQHLESVTAKLREAGVQVETNDDQITVNGNRKLKVVDIKTLVYPGFPTDLQQPFTTLLTKAHGTGVVTDTIYGARFKHIDELRRMNAQIKVEGRSAIVTGPVLLQGAKVKASDLRAGAALVIAGLMADGITEVTGLEHIDRGYENIVDKLKGLGANIWREQMTKQEIEEMKNA
>NZ_CP049978.1|WP_001131855.1|5190638_5191496_-|fructose-bisphosphate-aldolase
MPLVSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKQVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA
>NZ_CP049978.1|WP_000398594.1|5191706_5192075_-|sporulation-initiation-phosphotransferase-Spo0F
MEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELAVEA
>NZ_CP049978.1|WP_000912402.1|5192276_5192801_+|DUF2529-domain-containing-protein
MLKIFSTQLSGYFSRVSQKEEMNIEDSARLLAQALVGDGFIYLHGTNEMEGVVAEALFGAEPMKQAKRLFENGKEAEVTSADRVLLISRFSTDEAVVEIAKKLQEEGHSIVGISALQEGTESLERYTDVHIDTKLLKGLIPDDEGNRYGFPSLIVALFAYHGIKFTIDEMLNEY
>NZ_CP049978.1|WP_000170460.1|5192833_5194441_-|CTP-synthase
MTKYIFVTGGVVSSLGKGITAASLGRLLKNRGLNVTIQKFDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSSVLQKERRGEYLGGTVQVIPHITNEIKERVYRSGRETNADVVITEIGGTVGDIESLPFLEAIRQIKSDIGRDNVMYIHCTLIPYLKAAGEMKTKPTQHSVKELRSLGIQPNIIVVRTEMPVSQDMKDKLALFCDIDTKAVIEARDADTLYAVPLSLQEQNMDQIVCDHLKLDNPAADMTEWTALVNKVRNLSKKTKIALVGKYVELQDAYISVVEALRHAGYSFDTDVEVKWVNAEHVTAENVKELVGDTDGILVPGGFGDRGVEGKIVAIQYARENKVPFLGICLGMQLASIEFARNVLGLEGANSSEINPDTPYAIIDLLPEQKDVEDLGGTLRLGLYPCKLAEETNAYNAYNEPVVYERHRHRYEFNNQFRPDMEKEGFVFSGTSPDGRLVEIIELKDHPWFVAAQFHPELVSRPNRPQPLFHDFVRASITNKESK
>NZ_CP049978.1|WP_000346280.1|5194698_5195229_-|DNA-directed-RNA-polymerase-subunit-delta
MDFKQYSPEELKECSMIEVVHSVLGDKKQATTFNELVQEIAQVLGLSQEQVNAKIAQFYTDLNIDGRFINLGENRWGLRSWYPYEQIDEEILPQPKPKKKRKVEEDGFDDYIEEDEDDFDDADVSEDEDDVEDLDKVLEEEDGDDDDLDDLDEDDDDFAEEELEYDETEEEEEEEL
>NZ_CP049978.1|WP_000238599.1|5195383_5196013_-|TetR/AcrR-family-transcriptional-regulator
MVKHNVHASVKDEKLVALRREQMIKGAVQLFKQKGFPRTTTREIAKAAGFSIGTLYEYIRTKDDVLYLVCDSIYEHVKERLEEVVCTEKGSIESLKIAITNYFKVMDELQEEVLIMYQEVRFLPKESLPYVLEKEFQMVGMFENILEQCTENGTFTLNKKEIQLLAHNIFIQGQMWGFRRWALQKLYTLEEYTEMQIRYVLQGAHMLPK
>NZ_CP049978.1|WP_050822179.1|5196079_5197219_-|acyl-CoA-dehydrogenase-AcdA
MHFKLSEEHEMIRKMVRDFAKNEVAPTAAERDEEERFDRELFDQMAELGLTGIPWPEEYGGIGSDYLAYVIAIEELSRVCASTGVTLSAHTSLAGWPIFKFGTEEQKQKFLRPMAEGKKIGAYGLTEPGSGSDAGGMKTIAKRDGDHYILNGSKIFITNGGIADIYVVFALTDPESKQRGTSAFIVESDTPGFSVGKKESKLGIRSSPTTEIMFEDCRIPVENLLGGEGQGFKVAMQTLDGGRNGIAAQAVGIAQGALDASVEYARERHQFGKPIAAQQGIGFKLADMATDVEAARLLTYQAAWLESEGLPYGKESAMSKVFAGDTAMKVTTEAVQVFGGYGYTKDYPVERYMRDAKITQIYEGTQEIQRLVISRMLTK
>NZ_CP049978.1|WP_001011179.1|5197240_5198371_-|acyl-CoA-dehydrogenase
MNFRFNEEQQMMRKMVRDFAQKEIAPFVPSMEQGVFPKEILQKMGELGLMGIPAPAKYGGAEMDFISYILAIEEISKVSATVGVILAVHTSVGMNPILYFGTEEQKKKYVSKLATGEYLGAFALTEPNAGSDAGSLKSRAVKKGDHYIINGSKVFITNGGEASTYIVFASTNPEAGKSGISAFIVEKDTPGLIIGKDEHKMGLLGSRTVQLTFEDMKVPAENLLGEEGQGFKVAMANLDVGRIGIGAQALGIAEAALGCAIDYAKEREQFGKPIAAQQGIGFKLADMATSVEAARLLVYRAASLRAQGLPCGKEASIAKLFASKTAVEVAIEAVQVFGGYGYTKDYPVERFFRDAKITQIYEGTSEIQKLVISRAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049978_3	3.1\|5140698\|31\|NZ_CP049978\|CRISPRCasFinder	5140698-5140728	31	JX238501	Bacillus phage phiAGATE, complete genome	124559-124589	8	0.742
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812210	Flavobacterium phage vB_FspS_hemulen9-1, complete genome	22854-22887	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812215	Flavobacterium phage vB_FspS_lillamy9-4, complete genome	22191-22224	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812216	Flavobacterium phage vB_FspS_lillamy9-5, complete genome	22191-22224	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NC_048835	Flavobacterium phage vB_FspS_lillamy9-1, complete genome	22191-22224	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812213	Flavobacterium phage vB_FspS_lillamy9-2, complete genome	22191-22224	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812230	Flavobacterium phage vB_FspS_sniff9-2, complete genome	21831-21864	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812209	Flavobacterium phage vB_FspS_hemulen6-2, complete genome	22983-23016	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812218	Flavobacterium phage vB_FspS_lillamy9-7, complete genome	21454-21487	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812233	Flavobacterium phage vB_FspS_snork9-1, complete genome	22007-22040	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812219	Flavobacterium phage vB_FspS_morran9-1, complete genome	22308-22341	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812217	Flavobacterium phage vB_FspS_lillamy9-6, complete genome	21930-21963	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NC_048840	Flavobacterium phage vB_FspS_snork6-1, complete genome	22137-22170	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NC_048839	Flavobacterium phage vB_FspS_sniff9-1, complete genome	22057-22090	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NC_048842	Flavobacterium phage vB_FspS_stinky9-1, complete genome	21673-21706	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812232	Flavobacterium phage vB_FspS_snork6-2, complete genome	21655-21688	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	MN812208	Flavobacterium phage vB_FspS_hemulen6-1, complete genome	22983-23016	9	0.735
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47181-47214	11	0.676
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47565-47598	11	0.676
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47949-47982	11	0.676
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48333-48366	11	0.676
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48717-48750	11	0.676
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49101-49134	11	0.676
NZ_CP049978_3	3.2\|5140752\|34\|NZ_CP049978\|CRISPRCasFinder	5140752-5140785	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49485-49518	11	0.676

1. spacer 3.1|5140698|31|NZ_CP049978|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

2. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812210 (Flavobacterium phage vB_FspS_hemulen9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

3. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812215 (Flavobacterium phage vB_FspS_lillamy9-4, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

4. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812216 (Flavobacterium phage vB_FspS_lillamy9-5, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

5. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NC_048835 (Flavobacterium phage vB_FspS_lillamy9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

6. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812213 (Flavobacterium phage vB_FspS_lillamy9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

7. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812230 (Flavobacterium phage vB_FspS_sniff9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

8. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812209 (Flavobacterium phage vB_FspS_hemulen6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

9. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812218 (Flavobacterium phage vB_FspS_lillamy9-7, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

10. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812233 (Flavobacterium phage vB_FspS_snork9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

11. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812219 (Flavobacterium phage vB_FspS_morran9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

12. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812217 (Flavobacterium phage vB_FspS_lillamy9-6, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

13. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NC_048840 (Flavobacterium phage vB_FspS_snork6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

14. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NC_048839 (Flavobacterium phage vB_FspS_sniff9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

15. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NC_048842 (Flavobacterium phage vB_FspS_stinky9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

16. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812232 (Flavobacterium phage vB_FspS_snork6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

17. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to MN812208 (Flavobacterium phage vB_FspS_hemulen6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

18. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

19. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

20. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

21. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

22. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

23. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

24. spacer 3.2|5140752|34|NZ_CP049978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

258508 : 266457

uncultured_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000917311.1\|258508_258793_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.2e-20	54.8
WP_001029993.1\|258831_260466_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.5e-157	58.0
WP_162841983.1\|260869_262411_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	8.9e-22	31.7
WP_000833096.1\|262797_264123_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.1e-44	29.4
WP_000929880.1\|264266_264968_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.5e-40	36.0
WP_000719210.1\|264951_266457_+	aminopeptidase AmpS	W8CYF6	Bacillus_phage	7.8e-31	30.0

DBSCAN-SWA_2

311044 : 319420

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625682.1\|311044_312352_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.9e-21	25.3
WP_070757983.1\|312440_313160_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.0e-49	44.3
WP_000278823.1\|313152_313407_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666787.1\|313403_314087_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000055562.1\|314070_316290_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	2.6e-163	41.2
WP_000879025.1\|316274_317690_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-55	35.4
WP_001262439.1\|317795_318836_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.2e-67	45.9
WP_000088589.1\|318832_319420_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.1e-28	37.4

DBSCAN-SWA_3

1267682 : 1323330

Acinetobacter_phage(27.27%)

bacteriocin,integrase,portal,capsid,terminase,coat

attL 1307598:1307618|attR 1323406:1323426

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001277719.1\|1267682_1268150_-\|coat	spore coat protein CotY	NA	NA	NA	NA
WP_000191204.1\|1268292_1270359_-	ATP-dependent helicase	A0A068EQC7	Bacillus_phage	2.9e-76	31.5
WP_000543307.1\|1270459_1270882_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000765863.1\|1270883_1271402_-	hypothetical protein	NA	NA	NA	NA
WP_000084013.1\|1271495_1272227_-	esterase family protein	NA	NA	NA	NA
WP_070757201.1\|1272430_1273342_+	DMT family transporter	NA	NA	NA	NA
WP_070757200.1\|1273418_1273991_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_000140099.1\|1273983_1274652_-	DUF4386 domain-containing protein	NA	NA	NA	NA
WP_000878734.1\|1274853_1275252_-	hypothetical protein	NA	NA	NA	NA
WP_000107211.1\|1275407_1276886_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_070757199.1\|1277916_1279335_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000636321.1\|1279331_1279919_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-48	48.4
WP_001067361.1\|1279915_1280941_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.6e-51	34.8
WP_000536698.1\|1280942_1281704_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.3e-36	40.6
WP_000865118.1\|1281700_1282315_+	N-(5'phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA
WP_001105015.1\|1282311_1283505_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_048568776.1\|1283508_1284285_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000946131.1\|1284358_1284718_+	DUF4029 domain-containing protein	NA	NA	NA	NA
WP_044584232.1\|1284832_1286332_+	lactate permease	NA	NA	NA	NA
WP_001128613.1\|1286422_1287106_+	YukJ family protein	NA	NA	NA	NA
WP_000424530.1\|1287120_1287954_-	hypothetical protein	NA	NA	NA	NA
WP_000650090.1\|1288150_1288936_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_001099940.1\|1288955_1290191_+	YARHG domain-containing protein	NA	NA	NA	NA
WP_048568778.1\|1290237_1290660_-	hypothetical protein	NA	NA	NA	NA
WP_070757198.1\|1290860_1292195_+	CoA-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.6e-17	26.7
WP_000996781.1\|1292355_1292766_+	DUF3908 family protein	NA	NA	NA	NA
WP_070757197.1\|1292796_1294338_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_070757196.1\|1294353_1296303_-	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_048568782.1\|1296299_1298219_-\|bacteriocin	putative thiazole-containing bacteriocin maturation protein	NA	NA	NA	NA
WP_000569926.1\|1298343_1299603_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_070757195.1\|1299736_1302604_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_000428506.1\|1303428_1303638_+	helix-turn-helix transcriptional regulator	S5M643	Brevibacillus_phage	1.3e-05	41.1
WP_001109895.1\|1303640_1304018_+	hypothetical protein	NA	NA	NA	NA
WP_001178294.1\|1304046_1304229_+	DUF3976 domain-containing protein	NA	NA	NA	NA
WP_070757194.1\|1304361_1304721_+	hypothetical protein	NA	NA	NA	NA
WP_083320159.1\|1304843_1305764_+	hypothetical protein	NA	NA	NA	NA
WP_070757193.1\|1305946_1306999_+	hypothetical protein	NA	NA	NA	NA
1307598:1307618	attL	NA	NA	NA	NA
WP_070757192.1\|1307810_1309109_-	hypothetical protein	NA	NA	NA	NA
WP_070757191.1\|1309285_1310014_+	hypothetical protein	NA	NA	NA	NA
WP_168369335.1\|1310292_1310469_-	hypothetical protein	NA	NA	NA	NA
WP_070757190.1\|1310490_1310697_-	hypothetical protein	NA	NA	NA	NA
WP_070757189.1\|1311338_1311542_-	hypothetical protein	NA	NA	NA	NA
WP_070757188.1\|1311725_1311974_-	hypothetical protein	NA	NA	NA	NA
WP_168369336.1\|1312045_1312216_-	hypothetical protein	NA	NA	NA	NA
WP_070757375.1\|1312355_1312595_-	hypothetical protein	NA	NA	NA	NA
WP_070757186.1\|1312738_1314064_-	hypothetical protein	A0A1P8CWT6	Bacillus_phage	5.2e-63	36.9
WP_139147410.1\|1314697_1315024_+	hypothetical protein	NA	NA	NA	NA
WP_070757184.1\|1315020_1315368_+	hypothetical protein	NA	NA	NA	NA
WP_070757183.1\|1315415_1315760_+	hypothetical protein	A0A0S2MXX9	Enterococcus_phage	2.2e-13	38.8
WP_070757182.1\|1315899_1316340_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_070757181.1\|1316336_1316621_+	hypothetical protein	NA	NA	NA	NA
WP_070757180.1\|1316797_1317034_+	hypothetical protein	NA	NA	NA	NA
WP_070757179.1\|1317311_1318604_+\|portal	phage portal protein	A0A060AFC9	Staphylococcus_phage	1.2e-64	33.8
WP_070757374.1\|1318665_1320324_+\|capsid	phage major capsid protein	A0A1G5SCB8	Enterococcus_phage	4.2e-54	35.2
WP_070757178.1\|1320682_1321177_-	hypothetical protein	NA	NA	NA	NA
WP_070757177.1\|1321315_1322071_-	hypothetical protein	NA	NA	NA	NA
WP_070757176.1\|1322175_1323330_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	5.6e-05	20.9
1323406:1323426	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1910548 : 1918709

Bacillus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070757548.1\|1910548_1911838_+	C40 family peptidase	A0A217EQL1	Bacillus_phage	1.9e-09	38.7
WP_001194306.1\|1911937_1912702_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000453861.1\|1912942_1914703_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.4e-273	98.0
WP_048568907.1\|1914789_1915467_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.3e-122	98.7
WP_001231621.1\|1915463_1916537_+	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	6.1e-187	98.0
WP_000818985.1\|1916826_1917546_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_070757546.1\|1917836_1918709_+	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	2.8e-65	44.7

DBSCAN-SWA_5

2568048 : 2574697

Bacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001139345.1\|2568048_2568264_-	spore germination protein	A0A2H4J3A3	uncultured_Caudovirales_phage	3.4e-25	83.8
WP_000369348.1\|2568500_2568632_+	DUF3983 domain-containing protein	A0A1B1P7V8	Bacillus_phage	2.9e-11	79.1
WP_000097509.1\|2568996_2569797_+	C1 family peptidase	A0A2K9L1Z4	Tupanvirus	1.0e-37	37.2
WP_002061468.1\|2569816_2570029_+	hypothetical protein	NA	NA	NA	NA
WP_002061469.1\|2570093_2570294_+	N-acetylmuramoyl-L-alanine amidase	D2XR33	Bacillus_phage	1.0e-15	90.9
WP_070757805.1\|2570431_2571313_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_000372690.1\|2571440_2571950_+	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	1.4e-16	36.0
WP_000411452.1\|2572067_2572598_+	hypothetical protein	NA	NA	NA	NA
WP_001163828.1\|2572610_2573285_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-28	30.7
WP_058839783.1\|2573281_2574697_+	HAMP domain-containing sensor histidine kinase	A0A1V0SKH0	Klosneuvirus	8.2e-06	23.1

DBSCAN-SWA_6

3615153 : 3625709

uncultured_Caudovirales_phage(45.45%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000413738.1\|3615153_3615774_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	8.2e-19	62.2
WP_000976240.1\|3615866_3616670_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_048567461.1\|3616670_3617213_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_001102627.1\|3617205_3617529_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_030027264.1\|3617901_3618132_-\|bacteriocin	bacteriocin biosynthesis protein	A0A1B1P7Q9	Bacillus_phage	1.1e-26	80.3
WP_030027266.1\|3618305_3619301_-	N-acetylmuramoyl-L-alanine amidase	A0A218KCJ1	Bacillus_phage	1.5e-78	47.5
WP_030027267.1\|3619369_3620191_-	M23 family metallopeptidase	A0A2H4J669	uncultured_Caudovirales_phage	7.8e-09	33.9
WP_030027273.1\|3620438_3621407_-	lysozyme family protein	A0A1W6JSC2	Bacillus_phage	1.5e-30	45.5
WP_000464424.1\|3621645_3622032_-	DUF1492 domain-containing protein	A0A288WG73	Bacillus_phage	2.2e-46	70.6
WP_000900735.1\|3622006_3622171_-	hypothetical protein	NA	NA	NA	NA
WP_069605450.1\|3622440_3623313_-	DnaD domain protein	A0A2H4J394	uncultured_Caudovirales_phage	8.1e-97	60.5
WP_001189064.1\|3623465_3623660_-	hypothetical protein	A0A2H4J4V8	uncultured_Caudovirales_phage	5.9e-16	71.0
WP_069605451.1\|3623671_3624430_-	antirepressor	A0A2H4JBC7	uncultured_Caudovirales_phage	4.6e-96	69.4
WP_048567457.1\|3624632_3624845_-	hypothetical protein	A6M975	Geobacillus_virus	2.1e-11	63.0
WP_033683142.1\|3625049_3625709_+	helix-turn-helix domain-containing protein	A0A2H4J441	uncultured_Caudovirales_phage	8.7e-35	41.0

DBSCAN-SWA_7

4443070 : 4450755

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048568486.1\|4443070_4443994_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-45	43.5
WP_070756976.1\|4444119_4445055_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.0e-20	24.5
WP_000018029.1\|4445056_4445749_-	response regulator transcription factor	B5LWA6	Feldmannia_species_virus	1.4e-06	28.8
WP_001293578.1\|4445917_4446091_+	hypothetical protein	NA	NA	NA	NA
WP_001014310.1\|4446091_4446286_+	YwbE family protein	NA	NA	NA	NA
WP_001255971.1\|4446324_4447524_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.6e-71	41.2
WP_000587818.1\|4447818_4448142_+	heme oxygenase	NA	NA	NA	NA
WP_070756977.1\|4448214_4448979_-	class B sortase	NA	NA	NA	NA
WP_070756978.1\|4449011_4449782_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.9e-14	28.6
WP_001036847.1\|4449771_4450755_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.5e-17	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049978

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection