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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017405 Bordetella pertussis strain 25525 chromosome, complete genome 4 crisprs csa3,cas3,DinG,DEDDh 0 0 33 0

Results visualization

1. NZ_CP017405
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017405_1 252689-252773 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017405_2 435181-435274 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017405_3 1002659-1002753 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017405_4 3711446-3711555 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 59497 53 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_2 70134 : 123122 51 Planktothrix_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_3 136206 : 208684 58 Bacillus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_4 217763 : 333433 101 uncultured_Caudovirales_phage(12.5%) transposase,tRNA,protease NA
DBSCAN-SWA_5 357016 : 416484 56 Streptococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_6 424295 : 479269 44 Bradyrhizobium_phage(20.0%) transposase NA
DBSCAN-SWA_7 593567 : 654757 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_8 660081 : 707321 51 uncultured_Caudovirales_phage(18.18%) tail,transposase,tRNA,terminase NA
DBSCAN-SWA_9 713487 : 767417 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_10 1030518 : 1085610 51 uncultured_Mediterranean_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_11 1091585 : 1163605 57 Planktothrix_phage(18.18%) transposase,tRNA,holin NA
DBSCAN-SWA_12 1323057 : 1391544 56 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1417547 : 1471117 49 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_14 1515464 : 1581964 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_15 1644442 : 1710942 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_16 1739113 : 1777703 36 Emiliania_huxleyi_virus(14.29%) transposase,protease NA
DBSCAN-SWA_17 2152830 : 2227690 60 Bacillus_virus(33.33%) transposase,tRNA NA
DBSCAN-SWA_18 2314627 : 2387843 59 Bacillus_virus(20.0%) transposase NA
DBSCAN-SWA_19 2401049 : 2445372 45 Bacillus_phage(25.0%) transposase NA
DBSCAN-SWA_20 2455612 : 2514882 51 Klosneuvirus(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_21 2566131 : 2629097 55 Synechococcus_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_22 2636393 : 2691984 47 uncultured_Caudovirales_phage(25.0%) transposase NA
DBSCAN-SWA_23 2727933 : 2794263 56 Ectocarpus_siliculosus_virus(11.11%) transposase NA
DBSCAN-SWA_24 2822308 : 2886264 60 Salmonella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_25 2965941 : 3006610 42 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_26 3062075 : 3134946 59 Moraxella_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_27 3138089 : 3204898 51 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_28 3235284 : 3274473 37 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_29 3463423 : 3536410 60 Xanthomonas_phage(14.29%) transposase,tRNA,holin NA
DBSCAN-SWA_30 3554833 : 3598096 36 Erwinia_phage(50.0%) transposase,protease NA
DBSCAN-SWA_31 3659999 : 3780243 101 Acinetobacter_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_32 3795181 : 3853253 46 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_33 4285464 : 4350376 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage