Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017603 Clostridium formicaceticum strain ATCC 27076 chromosome, complete genome 5 crisprs WYL,Cas14u_CAS-V,RT,csa3,cas14k,c2c9_V-U4,PD-DExK,cas3,cas14j,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,DinG,DEDDh,cas7,cas8b2 0 9 13 0

Results visualization

1. NZ_CP017603
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017603_1 219327-219389 Unclear NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017603_2 663813-663904 TypeV NA
1 spacers
cas14k

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017603_3 2541918-2543001 TypeI-B II-B
16 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017603_4 3724927-3726743 Unclear NA
27 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017603_5 4200017-4200109 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017603_3 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542608-2542643 36 NZ_CP013332 Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence 1050-1085 7 0.806
NZ_CP017603_3 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542674-2542709 36 NZ_CP013332 Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence 1050-1085 7 0.806
NZ_CP017603_5 5.1|4200049|29|NZ_CP017603|CRISPRCasFinder 4200049-4200077 29 KY290955 Aeromonas phage 65.2, complete genome 192318-192346 7 0.759
NZ_CP017603_5 5.1|4200049|29|NZ_CP017603|CRISPRCasFinder 4200049-4200077 29 NC_015251 Aeromonas phage 65, complete genome 192355-192383 7 0.759
NZ_CP017603_3 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542608-2542643 36 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 73863-73898 8 0.778
NZ_CP017603_3 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542674-2542709 36 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 73863-73898 8 0.778
NZ_CP017603_3 3.13|2542740|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542740-2542775 36 NC_018493 Bacillus cereus FRI-35 plasmid p02, complete sequence 23134-23169 8 0.778
NZ_CP017603_4 4.27|3726678|36|NZ_CP017603|CRISPRCasFinder,CRT 3726678-3726713 36 NC_021709 Alteromonas mediterranea 615 plasmid unnamed, complete sequence 89284-89319 8 0.778
NZ_CP017603_4 4.52|3726681|36|NZ_CP017603|PILER-CR 3726681-3726716 36 NC_021709 Alteromonas mediterranea 615 plasmid unnamed, complete sequence 89284-89319 8 0.778
NZ_CP017603_3 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542210-2542245 36 MK017819 Clostridium phage CPD4, complete genome 2759-2794 9 0.75
NZ_CP017603_3 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542210-2542245 36 MN417334 Clostridium phage CPAS-15, complete genome 6638-6673 9 0.75
NZ_CP017603_3 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542210-2542245 36 KY206887 Clostridium phage Clo-PEP-1, complete genome 44977-45012 9 0.75
NZ_CP017603_3 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542210-2542245 36 MF001357 Clostridium phage CP3, partial genome 36076-36111 9 0.75
NZ_CP017603_3 3.10|2542542|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542542-2542577 36 NZ_CP019175 Salmonella enterica subsp. enterica serovar Give strain CFSAN024229 plasmid pCFSAN024229, complete sequence 47165-47200 10 0.722
NZ_CP017603_3 3.16|2542938|34|NZ_CP017603|CRISPRCasFinder,CRT 2542938-2542971 34 MH622943 Myoviridae sp. isolate ctbc_4, complete genome 337301-337334 10 0.706
NZ_CP017603_3 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542608-2542643 36 KJ010548 Bacillus phage Bp8p-T, complete genome 148296-148331 11 0.694
NZ_CP017603_3 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542608-2542643 36 NC_029121 Bacillus phage Bp8p-C, complete genome 148294-148329 11 0.694
NZ_CP017603_3 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542674-2542709 36 KJ010548 Bacillus phage Bp8p-T, complete genome 148296-148331 11 0.694
NZ_CP017603_3 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR 2542674-2542709 36 NC_029121 Bacillus phage Bp8p-C, complete genome 148294-148329 11 0.694

1. spacer 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tgcaattttttcattttaaaactcctcct-tttcata	CRISPR spacer
ttaaattttttcatttaaaaagtcctcctaatttat-	Protospacer
*  ************* **** *******  **.** 

2. spacer 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tgcaattttttcattttaaaactcctcct-tttcata	CRISPR spacer
ttaaattttttcatttaaaaagtcctcctaatttat-	Protospacer
*  ************* **** *******  **.** 

3. spacer 5.1|4200049|29|NZ_CP017603|CRISPRCasFinder matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 7, identity: 0.759

tttcactaataacgtgatcatcaacgctt	CRISPR spacer
tttcactaacaacgtgatcctcaaattcg	Protospacer
*********.********* ****  .. 

4. spacer 5.1|4200049|29|NZ_CP017603|CRISPRCasFinder matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 7, identity: 0.759

tttcactaataacgtgatcatcaacgctt	CRISPR spacer
tttcactaacaacgtgatcctcaaattcg	Protospacer
*********.********* ****  .. 

5. spacer 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
ttccattttttcattttaaaaattctcctttaaaat	Protospacer
* * ***************** *.*******  *  

6. spacer 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
ttccattttttcattttaaaaattctcctttaaaat	Protospacer
* * ***************** *.*******  *  

7. spacer 3.13|2542740|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to NC_018493 (Bacillus cereus FRI-35 plasmid p02, complete sequence) position: , mismatch: 8, identity: 0.778

-----atacttttggtacaattttataccaaattacattac	CRISPR spacer
tcaaaaaac-----gtacaatttaatacaaaattacattac	Protospacer
     * **     ********* **** ************

8. spacer 4.27|3726678|36|NZ_CP017603|CRISPRCasFinder,CRT matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

ttttagaagggtgtttttttatgccttttaaaaagg	CRISPR spacer
aatttctatggtgtttttttatgcgtttaaaaaagg	Protospacer
  **   * *************** *** *******

9. spacer 4.52|3726681|36|NZ_CP017603|PILER-CR matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

ttttagaagggtgtttttttatgccttttaaaaagg	CRISPR spacer
aatttctatggtgtttttttatgcgtttaaaaaagg	Protospacer
  **   * *************** *** *******

10. spacer 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to MK017819 (Clostridium phage CPD4, complete genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

11. spacer 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to MN417334 (Clostridium phage CPAS-15, complete genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

12. spacer 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to KY206887 (Clostridium phage Clo-PEP-1, complete genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

13. spacer 3.5|2542210|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to MF001357 (Clostridium phage CP3, partial genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

14. spacer 3.10|2542542|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019175 (Salmonella enterica subsp. enterica serovar Give strain CFSAN024229 plasmid pCFSAN024229, complete sequence) position: , mismatch: 10, identity: 0.722

ccatatttttttctgtaaaaaaacatttctgaatca	CRISPR spacer
cgtctgttttttctgtcaaaaaacatttttgacaaa	Protospacer
*  .  ********** ***********.***   *

15. spacer 3.16|2542938|34|NZ_CP017603|CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 10, identity: 0.706

-----atccttgtttttctagaacttctaatgaaatttg	CRISPR spacer
caatgat-----tttttctagttcttctaatgaaataaa	Protospacer
     **     *********  *************  .

16. spacer 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to KJ010548 (Bacillus phage Bp8p-T, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

17. spacer 3.11|2542608|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to NC_029121 (Bacillus phage Bp8p-C, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

18. spacer 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to KJ010548 (Bacillus phage Bp8p-T, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

19. spacer 3.12|2542674|36|NZ_CP017603|CRISPRCasFinder,CRT,PILER-CR matches to NC_029121 (Bacillus phage Bp8p-C, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 218855 : 267533 49 Leptospira_phage(22.22%) transposase NA
DBSCAN-SWA_2 290570 : 301975 13 Thermoanaerobacterium_phage(50.0%) integrase attL 282590:282604|attR 302982:302996
DBSCAN-SWA_3 636178 : 654098 16 Leptospira_phage(100.0%) integrase,transposase attL 648602:648617|attR 653872:653887
DBSCAN-SWA_4 1130780 : 1181019 44 Streptococcus_phage(25.0%) integrase,protease,transposase attL 1131781:1131840|attR 1174011:1174442
DBSCAN-SWA_5 1628072 : 1634138 6 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1938448 : 1987355 38 Bacillus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_7 2858452 : 2866999 17 Clostridium_phage(20.0%) NA NA
DBSCAN-SWA_8 2870344 : 2924324 64 Clostridium_phage(22.73%) integrase,head,plate,capsid,terminase,protease,portal,bacteriocin,tail,transposase attL 2889761:2889775|attR 2924574:2924588
DBSCAN-SWA_9 2928139 : 2979048 57 Leptospira_phage(30.0%) tRNA,capsid,portal,transposase NA
DBSCAN-SWA_10 3062454 : 3153228 98 Clostridium_phage(15.15%) integrase,head,plate,capsid,terminase,protease,tRNA,portal,bacteriocin,tail,transposase attL 3085245:3085304|attR 3122709:3122851
DBSCAN-SWA_11 3308183 : 3316799 8 uncultured_Mediterranean_phage(33.33%) protease NA
DBSCAN-SWA_12 3379943 : 3455386 95 Clostridium_phage(23.91%) integrase,plate,tRNA,portal,tail attL 3380287:3380303|attR 3422948:3422964
DBSCAN-SWA_13 4522521 : 4537955 11 Bacillus_phage(62.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage