CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP017756	Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence	0 crisprs	NA	0
NZ_CP017755	Cupriavidus malaysiensis strain USMAA1020 isolate pure chromosome 2, complete sequence	3 crisprs	cas4,DEDDh,csa3	1
NZ_CP017754	Cupriavidus malaysiensis strain USMAA1020 isolate pure chromosome 1, complete sequence	0 crisprs	WYL,cas3,RT,csa3,DinG,DEDDh	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017755_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017755_1

1107498-1107594

Orphan

Consensus_repeat	Method
GCCGCAGTGCAGGGCGCCGCGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017755_1

>merge|NZ_CP017755|1|1107498-1107594|CRISPRCasFinder
GCCGCAGTGCAGGGCGCCGCGCGCGTGCAGGTCCGCGCCGACCAGCAGGCCCGAGCCGGCGGAGAGCCTGTCGCCGCAGTGCAGGGCGCCGCGCACG

>NZ_CP017755|1|1|1107498-1107594|CRISPRCasFinder
GCCGCAGTGCAGGGCGCCGCGCGCG	TGCAGGTCCGCGCCGACCAGCAGGCCCGAGCCGGCGGAGAGCCTGTC
GCCGCAGTGCAGGGCGCCGCGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017755.1\|WP_071021324.1\|1104727_1105612_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP017755.1\|WP_071071668.1\|1105814_1106324_+\|multidrug/biocide-efflux-PACE-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP017755.1\|WP_071039613.1\|1115980_1116958_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP017755.1\|WP_071021312.1\|1110476_1111445_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NZ_CP017755.1\|WP_071071663.1\|1097705_1099223_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP017755.1\|WP_071071670.1\|1114794_1115901_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP017755.1\|WP_071071665.1\|1099350_1099932_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP017755.1\|WP_157128552.1\|1108311_1108455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017755.1\|WP_071021315.1\|1110026_1110287_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340594
NZ_CP017755.1\|WP_071022797.1\|1106460_1107054_-\|N-acetyltransferase	unknown	unknown	unknown
NZ_CP017755.1\|WP_071071666.1\|1103334_1104693_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP017755.1\|WP_071039606.1\|1096629_1097598_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP017755.1\|WP_071071672.1\|1117067_1118150_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP017755.1\|WP_071021310.1\|1112015_1113665_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|183265
NZ_CP017755.1\|WP_071021308.1\|1113719_1113923_-\|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP017755.1\|WP_071022800.1\|1102177_1103041_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP017755.1\|WP_157903332.1\|1118852_1119236_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368377
NZ_CP017755.1\|WP_156811516.1\|1101915_1102086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017755.1\|WP_071021318.1\|1108821_1109985_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|374209
NZ_CP017755.1\|WP_071021330.1\|1100100_1101483_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161

Protein	Function_ID	Function_description	E-value
NZ_CP017755.1\|WP_071021324.1\|1104727_1105612_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.40065e-34
NZ_CP017755.1\|WP_071071668.1\|1105814_1106324_+\|multidrug/biocide-efflux-PACE-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	3.88459e-52
NZ_CP017755.1\|WP_071039613.1\|1115980_1116958_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	2.34275e-177
NZ_CP017755.1\|WP_071021312.1\|1110476_1111445_+\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	2.10753e-39
NZ_CP017755.1\|WP_071071663.1\|1097705_1099223_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP017755.1\|WP_071071665.1\|1099350_1099932_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.15039e-19
NZ_CP017755.1\|WP_071021315.1\|1110026_1110287_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	5.38516e-23
NZ_CP017755.1\|WP_071071666.1\|1103334_1104693_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.47334e-59
NZ_CP017755.1\|WP_071039606.1\|1096629_1097598_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.41456e-67
NZ_CP017755.1\|WP_071071672.1\|1117067_1118150_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NZ_CP017755.1\|WP_071021310.1\|1112015_1113665_+\|STAS-domain-containing-protein	gnl\|CDD\|183265	PRK11660, PRK11660, putative transporter; Provisional.	2.83029e-167
NZ_CP017755.1\|WP_071022800.1\|1102177_1103041_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.99708e-40
NZ_CP017755.1\|WP_157903332.1\|1118852_1119236_-\|hypothetical-protein	gnl\|CDD\|368377	pfam05300, DUF737, Protein of unknown function (DUF737). This family consists of several uncharacterized mammalian proteins of unknown function.	0.00280936
NZ_CP017755.1\|WP_071071670.1\|1114794_1115901_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.71609e-136
NZ_CP017755.1\|WP_071021318.1\|1108821_1109985_+\|glycosyl-hydrolase	gnl\|CDD\|374209	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,. Sortilin, also known in mammals as neurotensin receptor-3, is the archetypical member of a Vps10-domain (Vps10-D) that binds neurotrophic factors and neuropeptides. This domain constitutes the entire luminal part of Sortilin and is activated in the trans-Golgi network by enzymatic propeptide cleavage. The structure of the domain has been determined as a ten-bladed propeller, with up to 9 BNR or beta-hairpin turns in it. The mature receptor binds various ligands, including its own propeptide (Sort-pro), neurotensin, the pro-forms of nerve growth factor-beta (NGF)6 and brain-derived neurotrophic factor (BDNF)7, lipoprotein lipase (LpL), apo lipoprotein AV14 and the receptor-associated protein (RAP)1.	8.28822e-05
NZ_CP017755.1\|WP_071021330.1\|1100100_1101483_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.06022e-137

>NZ_CP017755.1|WP_071022797.1|1106460_1107054_-|N-acetyltransferase
MQPPPRPLELRIDVSHGPAETERDIDAVHDRLCRPDGALHGMPSLACGVPGLRLRYREADGEYYVYVEDVARGRLAGYTVFNRLVEVDRRADRHLRAPHSKYALDYQRRGLASAIYRWALDGGLCLITGARQSAAAHALWMRLAAHYPLGYVELRDKALRYLGPAVTPAVLDDLHTRMILLGRGWTLDTLAGATGMR
>NZ_CP017755.1|WP_071071668.1|1105814_1106324_+|multidrug/biocide-efflux-PACE-transporter
MQQAQPKHRASPSRPRPDTPKTLAERLAHALSFELTAIVLCAPVVSWVLGLSLVHVGALTALVSLIAMAWNVAFNAVFERIERRFGLVRNVAVRIVHAIAFELGLIALVLPLASWWLEISLLDALLLDLGILLFFLPYTFFFNLVYDRLRARRIERKARKAWKAGEART
>NZ_CP017755.1|WP_071021324.1|1104727_1105612_-|LysR-family-transcriptional-regulator
MRHSPEALLAFAEAASLGSFSAAARKLGKRQSTISEAIANLEIDLGVQLFDRTARQPRLTDAARALLPEVLRVLEASEAIDQLAARLAGGEEARLTLVVSDTYQSSRYEETLAELERRFPTLELECQNAEHDDVIDLIQQGRAQLGLMAARSSYPPDIGAATVAEQAEIGLYVGLQHPFAAYGDGEVPLAALHEARELRLHTYVAPRGAPLETGLVAGRRWWSAPSYLMLMEMALAGFGWTELPRRMVEHFARGRLLELHARGWPRRMPVDAVWSRERPLGPAGSWVLERMLAP
>NZ_CP017755.1|WP_071071666.1|1103334_1104693_+|MFS-transporter
MAPRGTATLWVLSAGMFMAILDTNIVNVAMPAMRAGLGASLSELAWIVDVYNLSFAGLMLSAGLLADRLGARRVFLGGLALFLLASALCGLAPTVAALVGARALQGAGAALFLPSSLALLRAAYPDAAARARAVGVFGGLVATAAAAGPVLGGIVLAPLGWRGAFLVNLPAGLLALLAGPRVLAALPARPGRGADRAGQLLGMAALGAASFALIEGPARGWLSPAVGLATLAALVSALAFVQVERRGAAPMIPARLFADPALGGANWVGFVIGAAYFGCLFLLSLYLQQGLCMTPLHTGLSLLPLALCLTAGNVIAGRLLPRLGARRQIAAGLALAALGYLLCALATLHGGLAALLAAMLPLAAGTALAIAPMTATVLERAPSDLAGTASAVLNATRQVGALAGTAGAAAILAIAIGAGGDAGAALRLGACAAALLSVAGIAGALRIGARPH
>NZ_CP017755.1|WP_071022800.1|1102177_1103041_-|LysR-family-transcriptional-regulator
MNWDNTRYFLAIARSGSLRGAAASLEVDQATVGRRLAAFEEELGATLFLRTPQGYVLSQAGEMMLADAEQMESAAEAIGRKSALADRLLAGPVRIATTDTLAEGFVLPALAALQRRHPELEYTLLTATELVDVAAREADLAVRGLRPQAGNVIIKKLGVVEMGLYAAPDYLARRGKPRRGAGLSGHDLLMFPRDTVPRHWQELGGESLRGAHVALQSNSQMALRSAALRGMGIALLSAFLAERDSGLVRIFPDRRDWVDIWLVLHPDLRRVARVRAVIEALAGAFKR
>NZ_CP017755.1|WP_156811516.1|1101915_1102086_+|hypothetical-protein
MQIYLETHLRKTPAAARTSAARPTRPLLARLQAFLDAGWQRNLHHAQALARVYANR
>NZ_CP017755.1|WP_071021330.1|1100100_1101483_-|NCS2-family-permease
MMDQSIPSPTELDAASAPPQRKLDRYFEISARGSNTRQEVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTAFGSLLMGMWARLPIAIGCAISLTAFVAFGLVLGQKLTPSVALGAVFLMGVVFTAISVTGVRSWILRNLPAGVAHGAGIGIGLFLLLIASNDVGLVVKNSGAGLPVTLGKITAFPVVMSVLGLAAIFGLERRRVPGGILLVIVGISALGLAFDPAVKFTGVFALPSLSAPGHASLIGAMDVRGALSAAVLPSVFALVMTAVFDATGTIRAVAGQAGQLDASGHIRNGGRALTADSVSSIFSAFFGGAPAAAYIESTVGVAAGAKTGLAAVVVGLLFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMEDTVDALAGLVCAVFIVLTCNIVTGIMLGFCTLVVGRIVAGEWRKLNVGTVAIAVVLAAFYAGGWAI
>NZ_CP017755.1|WP_071071665.1|1099350_1099932_-|class-I-SAM-dependent-methyltransferase
MPSFSDPWLHPWLPAISARSTTSPVLEIGCGHGDDTAVLADAGLRVIAFDLSRAAVAAARLRVPSAQIECRDIRAPFPPQASELGAVIASLSLHYFPWDETVSIVQRIRDVMRPGGWLLCRLNSTEDHNFGAGQGVRIEENYYSVDGQPKRFFDEEAVCRLFDGQWQRVSMTHQRTRKYVRSKALWEVVVERV
>NZ_CP017755.1|WP_071071663.1|1097705_1099223_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MSSIQHAIEHYIGGRRTAGASGRSQEVTNPASGQVTGHVALAGVAEVNAAVAAAAAAFPAWAGTPPIRRARVLFRFLELLNRDKDALAHAITAEHGKVFTDAQGEVARGIDIVEFACGVPQLLKGDYTAQVSTGMDNWTLRQPLGVVAGITPFNFPVMVPMWMFPVALATGNTFVLKPSPTDPGPSLMIADLLKEAGLPDGVFNVVQGDKVAVDALVGHPDVRALSFVGSTPIASYIYETGAHHGKRVQALGGAKNHMVVMPDADIEQAVDALIGAAYGSAGERCMAISVAVLVGDVAERLMPRLVERARSLKVLDGENLAAEMGPIVTRAAHARITGYIERGVAEGAKLLVDGRDFDPASAGPGCAGGFWMGGTLFDHVTPEMTIYKEEIFGPVLSCVRVKDMAEAVRLINAHEFGNGVSCFTRDGNAAREFGQQIEVGMVGINVPIPVPMAWHGFGGWKRSLFGDMHAYGEEGVRFYTKQKSIMQRWPESIEKGAEFVMPTAK
>NZ_CP017755.1|WP_071039606.1|1096629_1097598_-|LysR-family-transcriptional-regulator
MKAKNKEEIWGHLHWLTVLAQQGSYTAAAAYLNVTKGAVSQRIADLERAAGVPLVQRTTRSVRLTDAGQRLVEEVGAPFEQIARSFAGVRDTAGEPRGVLRVTAPVAFSRQQLVPRLAGFFERYPDIRLELELSDKLRALALEGFDLAIRHTMAPPDTHVAWALCPTRNVLVASRAYLRRRGHPATPADLAGHDCLYYPRTRETPAWHFVEARPGAGQARPRVTVPVSGPFCATNSEALRDAALAGLGIALVPDFTAQSALQGNKLVEVLDEWLPVGAFPDQIFAIRPYAAHVPRAVSVFVEWLRTALQGGFAPAARVRREA
>NZ_CP017755.1|WP_157128552.1|1108311_1108455_-|hypothetical-protein
MRAHPYRTAPTRQPLPGVRACAGGRAAGRGQRTPARAGRHFLLAVLS
>NZ_CP017755.1|WP_071021318.1|1108821_1109985_+|glycosyl-hydrolase
MASSIAGSAAPHDGKTTLLVATRKGAWLYRADAARQQWVPDGPHFLGHIVHHLVLDPRDRRTLLAAARTGHLGPTVFRSTDGGRHWREATRPPAFARAEAGQEARVVDHVFWLAPGHADETGTWYAGTSPQGLFRSEDGGDTWAPVSGFNDHPMRPAWTGGAQDGTPDGPKLHSILVDPRDARHLYIGMSSGGVFESTDGGAGWAPLNAGCAADFLPPPPPEFGHDPHRVLLHPAAPDILYQQNHCGIYRMDRREGIWRRIGEAMPAEVGDIGLPIVAHPRDADTVWVFPMDGTDVWPRVSPQGRPAAYVTRDAGRSWQRQDRGLPAQQAWFTVKRQAMATDACDPVGLYVGTTGGEIWASADEGGNWSCLAQHLPEIYALETAVFA
>NZ_CP017755.1|WP_071021315.1|1110026_1110287_+|molybdopterin-synthase-sulfur-carrier-subunit
MKVMICSVLHSYTGGQPVVEAAGTSVAALLDDLERRYPGMRFRIVDEQGGLRPYMRVFVNRSQAMRLDAPLGESDEVHILQALAGG
>NZ_CP017755.1|WP_071021312.1|1110476_1111445_+|chemotaxis-protein-CheV
MSSSSAMREVDERTNLTNNNQFELLLFRLGDSNHSGQSEWFGINVFKVREILVMPTVTTVVGAAPAVLGMADIRGQVIPVIDLPKLVGCTPRSGLNILLVTEYARSTQGFAVEAVEEIVRLEWSQVVSAETSVKGDLVTSIAKLDAESDNPRLVQVLDVEQILRDVLPTRQPDVDPATVGPRLSLRPGARILAADDSAFARSLIEQGLQAMGVQVVMTKTGQEAWDVLGEIADQAAGSGKSVQDEIALVLTDLEMPEMDGFTLTRKIKGDARLKSLPVVIHSSLSGEASEEHVRKVGADAYVSKFLAKDLAETIRGVLARHA
>NZ_CP017755.1|WP_071021310.1|1112015_1113665_+|STAS-domain-containing-protein
MTALREAWRAGLFRRGNWLPNIVSGLIVGVVALPLAMAFAIASGARPAQGLYTAIIAGLLVSACGGSRVQIAGPTGAFIVILSGITARHGIEGLQIATLMAGIMLLAMGLARLGVVIKYIPAPVIVGFTTGIAVIIWVGQWRDFFGLPAVPGEHFHDKVWHLLQVLPQWHPATTGIALLSLALVVATPHIAPLRRVPGPLVALVVATALQAAFGFDGVATIGSAFGGISRGLPAFALPEVTPARVVELIGPAFTIAMLGAIESLLSAVVADGMAGTRHDSNQELIGQGIANIVAPLFGGFAATGAIARTATNIRNGGNSPLAGITHAVVLMLVLVLLAPLAASVPLAALAAILFVVAYNMSEVRHFAAMVVRAPRADVAILLITFVLTVFADLVVAVNIGVILAMMQFLRRMAASVEIARQDHGALGRELGAVPALPPGTLVYAIEGPFFFGAVENFERALVQTHTDPRCLVIRLRRVPFMDITGLQTLIEVVGKLRRRGVAVVLCEANARVRGKLARAGVMSALGEGNYVDSLEAALERCRVLRAAAA
>NZ_CP017755.1|WP_071021308.1|1113719_1113923_-|CopG-family-transcriptional-regulator
MESKTARLTVLIDPVKKKAFETLCASQDLTPSQVVRQLIRDYLQHHGVEYATKARAPAASTGRKRAG
>NZ_CP017755.1|WP_071071670.1|1114794_1115901_-|2-oxo-acid-dehydrogenase-subunit-E2
MRIFKLPDLGEGLQEAEIVAWHVAEGETVAADQPLLSVETAKAIVEIPSPFAGRLARHYAAPGDIVHLGAPLAGFEGAGEDDAGTVVGTVAVGSQVVAEAPAPLAGGAGAGAVRAAPAVRALARKLSVDLAMVTPSGAEGVITAADVERVAKALAETGPAEVLRGVRRAMAQNMARAQSEVAAATVMDDADIQAWPPGTDATMRLVRALVAGCRAEPGLNAWYEGGSGRRHVLQKIDVGIAADLPEGLFVPVLRDAGRRDAADLRQGLERMRADIRARTIAPEEMRGNTITLSNFGMIGGKYAAPIVVPPTVAILGAGRMHDAVVAAAGAVAIHRLLPLSLTFDHRVVTGGEAARFLAAVIADLALPD
>NZ_CP017755.1|WP_071039613.1|1115980_1116958_-|alpha-ketoacid-dehydrogenase-subunit-beta
MAEIHLVEAVNQALAHELARDPSVVLLGEDIGVNGGVFRATVGLQARFGAQRVIDTPLAESGIAGAAVGMAAMGLKPVAEIQFTGFIYPAIDHIINHAGRLRHRSRGRLSCPMVLRSPFGAGIHAPEHHSESPEAMFAHMPGIRVVIPSSPARAYGLLLAAIRDPDPVIFLEPTRLYRLFRQEVADDGQALPLDACFTLRDGSDLTLVSWGAMLQETLAAAGQLEQEGISAAVIDVATLKPLDLDTILASVARTGRCVIVHEAPRTAGFGAEIAAGLADAGLYSLAAPVLRVTGYDTVVPLARQEALYMPSVARIVDAARRAMAA
>NZ_CP017755.1|WP_071071672.1|1117067_1118150_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MGTVASFEIGYTQYLDARGEPKQDLPAFARDPAALLPLYRAMVLARHFDLKAIALQRTGKIGTFASAIGQEAIGVGVASAMRPEDVLVPSYRDHAAQFVRGVTMTESLLYWGGDERGSHFAAAPHDFPNNVPIATQVCHAAGAAYAFRLRGEARAAVCLLGDGGTSKGDFYEGMNLAGAWRVPMVLVVSNNQWAISMPRAAQTAAQTLAQKAIAAGVPGRQVDGNDIVAVRQAAAQALERARAGDGPSLIEAITYRLGDHTTADDASRYRDEASVKAHWAQEPVLRLRNYLASLGAWDAAREEALIKDCAQQVAQAVEAYLATPMPAPAAMFEHLYATLPAALAGQLAMAQRFAGTDTPP
>NZ_CP017755.1|WP_157903332.1|1118852_1119236_-|hypothetical-protein
MTPRRARGGPHPAKGSLLLQTLQRGAVQIGVSGSVNLMLVLDAAGITTRRSRSERCLLAQRYVMGTVPGALALRIAFTERRQAMRRWQPSPPSPPSPPSPPSPPSPPSAHRPPHTSAHTAHIHRARW

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Crispr_ID: NZ_CP017755_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017755_2

1671495-1671602

Orphan

Consensus_repeat	Method
GCGCTTTGCTCCTGGCCTCGCACGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017755_2

>merge|NZ_CP017755|2|1671495-1671602|CRISPRCasFinder
GCGCTTTGCTCCTGGCCTCGCACGTCCGTCCATAAGCCGCGCGATGCGTCGTCACCAATGCGCGCAAGGCTCCAGCCTTGCTGCGCTTTGCTCCTGGCCTCGCACGTC

>NZ_CP017755|2|2|1671495-1671602|CRISPRCasFinder
GCGCTTTGCTCCTGGCCTCGCACGTC	CGTCCATAAGCCGCGCGATGCGTCGTCACCAATGCGCGCAAGGCTCCAGCCTTGCT
GCGCTTTGCTCCTGGCCTCGCACGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017755.1\|WP_071039951.1\|1676178_1677114_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP017755.1\|WP_071072025.1\|1681921_1682590_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017755.1\|WP_071072013.1\|1667853_1668084_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017755.1\|WP_071020281.1\|1665761_1666436_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP017755.1\|WP_071072015.1\|1668114_1669059_-\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|183829
NZ_CP017755.1\|WP_084545778.1\|1671637_1672423_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP017755.1\|WP_071039952.1\|1677809_1680155_+\|phosphoesterase	unknown	unknown	gnl\|CDD\|309350
NZ_CP017755.1\|WP_071072027.1\|1682677_1683574_-\|proline-dioxygenase	unknown	unknown	gnl\|CDD\|177683
NZ_CP017755.1\|WP_071022593.1\|1666432_1667857_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP017755.1\|WP_084545777.1\|1659444_1661055_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP017755.1\|WP_071022590.1\|1669096_1670455_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240553
NZ_CP017755.1\|WP_071072018.1\|1672419_1673610_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP017755.1\|WP_071073355.1\|1680416_1681853_+\|cytochrome-c-peroxidase	unknown	unknown	gnl\|CDD\|224771
NZ_CP017755.1\|WP_071020287.1\|1661072_1662293_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP017755.1\|WP_071020272.1\|1670819_1671314_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP017755.1\|WP_071072011.1\|1662289_1665517_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP017755.1\|WP_071020263.1\|1675525_1676086_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP017755.1\|WP_071072023.1\|1674432_1675506_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP017755.1\|WP_071020289.1\|1658454_1659417_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP017755.1\|WP_071072021.1\|1673581_1674436_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041

Protein	Function_ID	Function_description	E-value
NZ_CP017755.1\|WP_071039951.1\|1676178_1677114_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.27946e-32
NZ_CP017755.1\|WP_071020281.1\|1665761_1666436_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	1.84636e-113
NZ_CP017755.1\|WP_071072015.1\|1668114_1669059_-\|2-dehydropantoate-2-reductase	gnl\|CDD\|183829	PRK12921, PRK12921, oxidoreductase.	6.47998e-83
NZ_CP017755.1\|WP_084545778.1\|1671637_1672423_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.13482e-54
NZ_CP017755.1\|WP_071039952.1\|1677809_1680155_+\|phosphoesterase	gnl\|CDD\|309350	pfam04185, Phosphoesterase, Phosphoesterase family. This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.	1.98258e-08
NZ_CP017755.1\|WP_071072027.1\|1682677_1683574_-\|proline-dioxygenase	gnl\|CDD\|177683	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional.	4.29347e-43
NZ_CP017755.1\|WP_071022593.1\|1666432_1667857_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.64695e-128
NZ_CP017755.1\|WP_084545777.1\|1659444_1661055_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.3618e-94
NZ_CP017755.1\|WP_071022590.1\|1669096_1670455_-\|MATE-family-efflux-transporter	gnl\|CDD\|240553	cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.40927e-153
NZ_CP017755.1\|WP_071072018.1\|1672419_1673610_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.14593e-87
NZ_CP017755.1\|WP_071073355.1\|1680416_1681853_+\|cytochrome-c-peroxidase	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	2.49154e-81
NZ_CP017755.1\|WP_071020287.1\|1661072_1662293_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.57007e-48
NZ_CP017755.1\|WP_071020272.1\|1670819_1671314_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	6.8416e-18
NZ_CP017755.1\|WP_071072011.1\|1662289_1665517_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP017755.1\|WP_071020263.1\|1675525_1676086_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	6.90795e-18
NZ_CP017755.1\|WP_071072023.1\|1674432_1675506_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.83997e-22
NZ_CP017755.1\|WP_071020289.1\|1658454_1659417_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.10245e-84
NZ_CP017755.1\|WP_071072021.1\|1673581_1674436_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.15669e-100

>NZ_CP017755.1|WP_071020272.1|1670819_1671314_+|winged-helix-turn-helix-transcriptional-regulator
MPSSTIKDPLVCNGAALRKATRRISQLYDAALAPCGLSVSQRSVLLHIARGGSPTMTELAHAMVLDRSALARNIQPLERDGYLVQRRDEEDGRSRRVELTAAGRAKLAESNRLWRGAQDRFETVYGSERAAALRVALAEIYSDEFAQAFEQGTPLPAGRGAEAA
>NZ_CP017755.1|WP_071022590.1|1669096_1670455_-|MATE-family-efflux-transporter
MLEAPIAPTLARMSWPNMLMMLAQSSTGLIETWFLARLGTDVLAGVAVVVPVLMLMQNMSQGAMGGGISSAVARALGAGDSGLVAQLARHALAINLLIGVLFSLLLWLGARPLFALLGAHGAALDAASAYGRVLFAGLPLMWAMNALASVVRGTGNMTVPGLVICCGAALLIPLSPCLIFGLGPLPRLGVAGGAWALVAYYAAGTAVLGWYCLSGRCAARLAAGRLHWRPMRSILTIGALACLNPILTNALIAVTTAQVGRHGGTAALAGYATAARLEYLLIPIAFGLGAPMVALVGANIGAGQVARARRIAITGGAMAFVLAELVGLAASLWPQAWLRLFGADAQLLATGSTYLHIVGPFYGFFAMGFSLYFASQGAGRLEWPLAAGVLRFLLFAGAGSLALAWGAGLPVYFALGALAMTVYGSCILWSIAGGGWDRPRAPARATRRRALA
>NZ_CP017755.1|WP_071072015.1|1668114_1669059_-|2-dehydropantoate-2-reductase
MRILVLGAGALGGYYGARLLAAGADVRFAVRPGRAAQLARDGLAVHSPLGNIARPVQTVPAGQVAQSGHAFDLVLLTCKAFDLDDAIATIAPALGPATVVLPLLNGGAVYPRLDAAFGKARVLGGVAYIATTLAADGTIRHLSPGDRLLVGARADAQAAAAASFHALAAQAPGTRLLSAQIDQDIWEKWVMICAGAAVTTLLRATIGEIMGTDHGAEAAGRLLDECVAIASAAGHVPRPEALAAMRAQLLAPGSGWAASMMRDIATQARRIEADAIVGDMIATGARLGVDAPLLRVAYSGLQAYARRQAGARPT
>NZ_CP017755.1|WP_071072013.1|1667853_1668084_+|hypothetical-protein
MKRGTGRGVFQPGVAKARCRKAASAAAAAPMPAAGRGTPSGSVGLAQIDFAQIDFAQVTAVGQVASQAGPGRPAGR
>NZ_CP017755.1|WP_071022593.1|1666432_1667857_+|heavy-metal-sensor-histidine-kinase
MMRSLSLTTRLALAFGLVAALVFGGAGTYLYRALATQVIERDDAELLRKAERVRREVAAQDGIDWQELRGVVSGNDEFGLLVRDAASTTLLRADAAGSGSGDGALPAVPPLAADAMLGAAAIRGWTDARGYPVRGVRALARDGHGRMLDYFLYQTGAARAQLMRAYRARLLLTGLVGSLAVAALGYLALRAAMAPLRRIAAGASDVTVRHLALPLDPARLPPELRELAAALQQMMDRLRDGFERLSQFSADLAHDFRTPIGNLLGQSQVALASERSVEEYQALLASNIEEYERLARMIENMLFLARAENARVALKPAVLDLERELAGLGDYFEGLAEAAGVALAVDGRGQVLADALLLRRAVGNLLANAIRFTPAGGTVTLRGYAERQGSAISVANPGPGIASEHLPRLFDRFFRADPARANSGESSGVGLAIVKSIMDLHGGSVEAVSPPGGMTVFTLHFPAQGEQGSASPGS
>NZ_CP017755.1|WP_071020281.1|1665761_1666436_+|heavy-metal-response-regulator-transcription-factor
MKILVVEDEPKTGEYLRKGLSESSFVVDLAVTGRDGLHQALEGDYDLVILDVMLPGLSGWEVLKGLRERKDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGPVREAERIEIEDLEIDLIRHRVTRAGRRIDLTPREFSLLHFLARRQTEVLSRTQIASHVWDMNFDSDTNVVDVAVRRLRAKMDDDFQPKLIHTVRGMGYVLESRRH
>NZ_CP017755.1|WP_071072011.1|1662289_1665517_-|efflux-RND-transporter-permease-subunit
MWIVRLALSRPYTFVVLALCLLLAGPLVLMRTPTDIFPAIDIPVVSVVWTYNGLSAEDMAHRIVTGYERSLTNSVDDIEHIESQSLAGVAVIKIFFHPGADINRAIAETSSGAQSMLRNMPPGTTPPLILSYSASTVPILRLALSSDSLPEQQLYDLGNNFIRTRLATVQGAAVPLPYGGKVRQVMVDLDTRALQARGLSPLDVVNAINAQNLVLPGGTAKIGALEYRVDLNGSPGTVAALNDLPVRSGPGGVVYVRDVAQVRDGYAPQANVVRRDGKRAALLEIEKSGNASTLSIVAQVKAMLPRITAGLPAALRVQPVSDQSVFVTAAVHGVLHEALVAACLTACMILLFLGSWRATLIIAVSIPLSVLASLMALSALGQTLNIMTLGGLALAVGVLVDDATVAIENITHHRELGKPLEAAILEGSAQIALPTLVSTLAICIVFLPMFLLSGVARYLFVPMAEAVVFAMVASYFFSRTLVPTLAHYLLRAEGSAPGRAWQRRCAALQARFEAAFCALRDAYAVWLGHALRRPRRLAALCLAACLASLALLPWLGRDFFPAVDGSEIRLHMRARTGTRIEETARLADAVEGRIRAAIGPAQVAGILDNIGLPVSGINLTYDSALPIGSADAEILVSLKPGASAAHESARLAALLPAAFPGISFSFLPADIISQILNFGLPAPIDIQVVGDKLEANRALAGKLAARLRGVPGLVDVHLQQPDDQPALTVQVDRTRALQAGLSQREVAQNLLISLSGSSQTTPNFWLNPRNGVSYPLMVSVPQYAMGSLQALDNIPLGAGLPGLTGSSAAPGAGALLGTFGSVVRGSQQGVVSHYNVQPVIDIFGSVRGRDLGAVADDIGRLVNEARRELPPGSELVVRGQVQTMQSSFAGLAAGMAIAVVLVYLLMVVNFQSWLDPLVILGGLPGALAGMAWMLFATHTTISVPALTGAIMCIGIATANSILVVSLARERLAAGVAPAEAALQAGAGRFRPVLMTALAMLIGMLPMALGAGAAGAQNAPLGRAVVGGLAAGTVSTLVLVPALFALLHRWLARRRPAAATLPDLPPTPTPTSRGQA
>NZ_CP017755.1|WP_071020287.1|1661072_1662293_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTRLPPNPPTPPALPAAPAATPAATGTRRPRRGQAACLALAAVAAMLAAGIYPRLQARAALAHSSADGSLPAVATVRPRRASAQTELVLPADVRAYQDAPVYARVSGYLRRWVADIGTPVRQGQLLAEIDAPEISDQLRQARAEEAVAAANYDLARRTAERWQDLLRSRSVAQQEADQKSADMQAKAAALASARSNVARLAQQAAYTRIVAPFDGVVTARNVDTGALVDAGGNGGPGKELFHLSAGDKLRIYIQVPQDDSVLVTPGMPAWLSLPQYPGQRFAATVTRSAGAIDAGTRSLRVELEAASAGGRILPGAYAEAHLSAPVAQAGWDLPASTLLFRAQGPRVAVVGAAGTIELRPVTLGRDFGSHVEIASGLQGGEQVVANPGDGLMAGAHVRLVASRGDQ
>NZ_CP017755.1|WP_084545777.1|1659444_1661055_-|efflux-transporter-outer-membrane-subunit
MPDDTCRFPASPPGRRTSHAGASPSPSGPRASRPQALRATLCGRRTLFTLFAFAALGNLAGCATAPPYSVPGVDLPPAFKEAGAAPADAAAAPSPQWWRAYGDTTLDALMPRLDATSQTLRKSRALLDDARAQTRAARAAYFPTLVAGASGGSSHVSANVVGRSLAGKTEPDHLLGLSATWEPDLWQRVSNSVDAAQAGAEASADDVAAMRLSLQAELAADYFSLRSAERERDLLARTVDSDATVLELVGNRWRGGIATEGEVAQARAQLENAKAQLAEVRLTRTQLEHAIATLLGVPPARFTLAPLVAAAPPLPPLPSAVPSQLLRRRPDIAAAERRVAAANAQVGVARAAFFPSLMLSAGLGLESTSLAGWLSAPSRFWALGPALAGTVFDGGRRHALADSARARFDASAADYRATVLRAFQDVEDNFAALSALGEEAASQRAATEASELALAQGLERYRKGAVAYLDVSVLESNALASARAEEAVRRRRLVASVMLVKALGGGWGGAGAKDAEDGGGAKDTASTAPPVATAGR
>NZ_CP017755.1|WP_071020289.1|1658454_1659417_+|LysR-family-transcriptional-regulator
MSAMLSSSLLSWLRCFEAAARHCSFTQAAGELCVTQGAVSQQIKQLEQWLQRPLFLRTPRALVLTPEGERLRFVLRESFQAIESTLTQLRRTRAPGPLALSCAPSFAMRWLTPRLGEFFREHPEVGLRVYGEFHALDRARMVRDGIDAGVRFDLGGYADLKASVFLEEWLLPVASPAFLAAHPRLRSPRDLEAGWLLHDSSPWDGADEFAEWRHWLAEAGVTVPGLEQGQRFNLSQLAVGAALAGQGIAMGRSALVLEDIEAGRLVDLFGLHVRSQASYVFVSAHGQTPDIAKVEDWLVGEGARFDAARARLLAATRRSG
>NZ_CP017755.1|WP_084545778.1|1671637_1672423_-|ABC-transporter-permease
MTAAALWRRSAGLRLGLGGLGTLALAWWWATAGAHGTSVLAARFSPAATLSSLAGLLQQPDFFQHAWASLRRVLAALAIALLAGVPAGLLVGGLQRVDAALSPAFQFLRMVSPLSWMPIVVMVLGVGDRSVLFLLAFAGVWPILLNTAAGVRQLDPRWLLLARSLAATRAELLCRVILPGVLSHVLTGLRLSIGVVWIVLVPAEMLGIDAGLGYFILDTRDRLAYSELLATVLVIGALGFALDGAARRLQRWWVPGQGPAP
>NZ_CP017755.1|WP_071072018.1|1672419_1673610_-|ABC-transporter-substrate-binding-protein
MCQVPISRREWLKLSALFTAGGALPLLRSLQARAATEPDAPVRIGYLPITDATPLLVAHHNGYFDQQGIRAEKPVLLRSWAQLVEAFIAGQVNVVHLLSPMTVWARFGSGVPAKVVAWNHVGGSGLTVAPQVSSLRDLGGKTVAIPFWYSIHNVVLQALLRQEGLTPVARKGGAAGPGEVKLVVMPPSDMPPALAARQIEGYIVAEPFNAAAETLGIGKILRFTGDVWRNHACCVVFMHQHDLDGRPAWSQKVVNAIVKAQRWTRDHRAEAAALLSKDGPNRYTPHALPVLRKVLDPDPAERGRYLASGAIRHAGWNDKRIDFQPYPYPSYTEELVRRLQGTLIEGNSAFLAGLDPRQAARELVDDRFVRQAIAAAGGPGAFGMVEDFARREEIAV
>NZ_CP017755.1|WP_071072021.1|1673581_1674436_-|ABC-transporter-ATP-binding-protein
MSTVRLQAEGLALHYGTDRAPALFAGVGLTLRPGEIVSLIGPSGAGKSTLLRVLAGLQPATRGSVRLDGELLGGPHPGVAVAFQDPCLLPWLTVGQNAGFGLDFRHQPPSSRHERQARVAQMLDAVGLGHALHLFPAQLSGGMAQRVALARCLARQPRVLLLDEPFGALDEVTRAHMQALLRQLVGAGAGPRRPAVLLITHDLDEALLLSDRIVLLGGTPARIVQEWTVTLPHPREASVEALGELRVGLVKALRQAMPPRRAPSASPLTEPLEEHYVPGTDLAA
>NZ_CP017755.1|WP_071072023.1|1674432_1675506_-|acyl-CoA/acyl-ACP-dehydrogenase
MTLDPELAAWLDAHADGLDCGSTDAAALLPRLATAGLIGAGVPIAAGGSGGSCSSAIGAVAALARHSQAAAFVLWAQRVFIEYLLQSPNRALAEAYLPGLLAGTTAGASGLSNAMKFLGGIEALQVEARRRTDGWQLDGRLPWATNLLAQRFVVAVAASDVAGGAPAVFAVPATQAGVQRSADLDLVGLRGTATAALALSQVPLGPEHLLHEDARSYLPRVRPAFLGMQCGLSIGLARRCLASVRGSEDSGRALLAEPAGAIAADLDAAAARLSAGVDAGAFVDAPRALFLLRIQLAELAQQAAQLELQARGGAGYLHGRHGGFARRWREAAFLPIVTPSLVQLRTELARGSARQAA
>NZ_CP017755.1|WP_071020263.1|1675525_1676086_-|carboxymuconolactone-decarboxylase-family-protein
MSRLPLLSADNAPTASRPFVERAIANNGFLPNLIAALAHSPAALEAYLTVGEINGRSGLTLAEREVVQITAAAVHGCAFCVAGHTAVALKKARLETDQVEALRTQAPLREARHEALAAFTRAIIATRGAVPDAALQDFLHAGFEAGQALDVVLGVSLATLCNFANNLAQSPLNAELEPYRWAPATA
>NZ_CP017755.1|WP_071039951.1|1676178_1677114_-|AraC-family-transcriptional-regulator
MQHVDRIIHWVLSSLALETSVFHLGQYCGQWRASLAGRARAGYHLVLHGQCWLHVPGRQAPLRLSAGDAVFFLRDIPHHLGPSDDAAACLPVAVMQPLGVPLAGGTGLACGFFDFRAGMAEALLAPFPDYLVLPADAPAAPGIRALFELIEQEARHSGAEASPLVARLVELLFFYVIRALSAREEVARGLWPMLRSAEFSALVLELIRHPERDWSIEAMAARVHMSRATFCKRFAAACGEPPATFLQLLRMKIATRLLDDGAAIAQVAERVGYRSESAFAKAFLRATGLQPGAWRRRAQASTTASLAATQM
>NZ_CP017755.1|WP_071039952.1|1677809_1680155_+|phosphoesterase
MEWSQARQSAVLLTSIASACLLAACGGNGDGSSSSTGGTTSAATTYGGVVLATAYVPGSTTGNPTIQPGYYAGATVCVDANSNGKCDSGEASAKTDANGRFSLQSSASGQLVADIPTSATNTAAGKAVSSHLILRASAAQVADQGATGVVISPMSSEVQRLVEANNTSYATEKANLAARLSGPALGTASVTVSGADALADANKLSGAAQQALLFEDNQLVQRYTYATTKFDRGDMYPDNLAVAGGDPSLPALASAGKVSTATAVTPSTAQQTITFAQAQQAAFNVEGVPRYDNIFVIMMENKSTNTILGSASAPNINNLLSSGNQFSTYYATGNPSEPNYTALGGGDDWGITDDAWWGCGAGAPGSATSNAPTDAAFAGGTASDGQPLPALAATPPLDSNHLSNYGSVGCSVGSTANHNVSAPSLFTLLSQAGMTWRTYSESMNPGQDPRADSIADAAVTDTYTGAGGPGTANYAVPKGLYKTKHHPGMAYQSTRNLPEFMANNRTVGGSQYSATDWAKSTAYTIPTGYNYDQLGTDLAKGDVGNLNFVMPDQCDDMHGVGSDASCSGTNLILRGDAYVQQLVTKIQSSPLWKNPLRRVAIVVMFDEGAGSSTSCCGWNATGSSGAPQPIQQDSSGKWAAVATPVTNYNKGNIGHGNSIFGVLTNQPNAPKGIVDSDAYSHFSFVRTLQDMFQIADPQTPSTYLARAKYTESFIAQNILVLPEFAGSADTHFDSVRPMNHAYVIPKTYSQRLNPGDVTGTSLATAQVGPDATQANAWALSK
>NZ_CP017755.1|WP_071073355.1|1680416_1681853_+|cytochrome-c-peroxidase
MPRAVRLGVLVLPLLLAACGGDGGDGAASGSASASPGGGSSSSPGGGTSSTGTPLSLAAQVGQKVFFDKTLSGGQNMSCASCHDPAYAYGPPNSLAVQLGSDPTRSGLRAVPSLRYKEATPAYSDSASNPDGVTLSAPGGGFMWDGRADSLASQAALPLLNPVEMNNTSQAAVVTAVQKGSYAALFTQAFGASAFSDTAAAFASIGQALQAFQMEEPSFHPYSSKFDLYLGNKIGGTLTAAELRGLAVFNDTGNCFACHYSGANFNGTRGLMTDFTYQALGVPRNDNSIPGNPSPIPKNSDSSYFDLGLCGPERTDHTPSPAGSASAFCGLFKVPTLRNIASRTAFFHNGVLHSLQQVVHFYNTRDTHPEYWYPSTGGSGSPTANPGYALFTQTLPGATPQKFNDLPATYQGNVDEEVPMGTGKGGSNTLGSGTQPRLPGDTPAMTEQDISDLICFLNTLSDGYQAPATPPTSGTCVN
>NZ_CP017755.1|WP_071072025.1|1681921_1682590_+|hypothetical-protein
MTRRFHAARYACGALSLIAAALLAACHDKAAVSQENFTKTINDYLARRGNLCVGKFDWPIYVTTDDEAARTRDAQQMPVLEKLGLVAGKSVTVERKGEDGERITAQARQYDLTAEGQKYYLHVPVVIATAARQVTHSADFCVAKLTLDKVVGWEPPQQRDGETKTSVLYTYKVEPAAWTQDADVRRVFPMVQRVIEGAGTMQLRAGVRLTQDGWVAEEFFQR
>NZ_CP017755.1|WP_071072027.1|1682677_1683574_-|proline-dioxygenase
MSITVNFAPEVRDWIAHNLRRGVEPQALIQELVNRNAKPELAQAMVGAVASALAHGGPMPGDTLEIDADDAPYRLEPLRVPEGARFRLGEREVRVLARLQRPAGVLMSGLLSTAECEALIALARPRLRRSTVVDPVTGRDIVAGHRSSDGMFFLPRETPLIAALEDRVAKLTGIPAENGEGLQMLHYSAGAESTPHVDYLQPGNEANRESIARSGQRVGTLLMYLNDVPGGGETVFPQIGYAVVPQQGQSFYFEYGNRFGQSDPLSLHAAAPVTAGEKWVATKWIRSRRFVPRGAAQD

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Crispr_ID: NZ_CP017755_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017755_3

1804949-1805051

Orphan

Consensus_repeat	Method
AGTTCGACCCCTACAGCCAGGGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017755_3

>merge|NZ_CP017755|3|1804949-1805051|CRISPRCasFinder
AGTTCGACCCCTACAGCCAGGGTGCCAAGGCTGGCGAGAAGTTCGATCCCTACAGCCAGGGTGCCAAGGCCGGCGACAAGTTCGACCCCTACAGCCAGGGCGC

>NZ_CP017755|3|3|1804949-1805051|CRISPRCasFinder
AGTTCGACCCCTACAGCCAGGGTGC	CAAGGCTGGCGAGAAGTTCGATCCCTACAGCCAGGGTGCCAAGGCCGGCGACA
AGTTCGACCCCTACAGCCAGGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017755.1\|WP_071073363.1\|1792885_1794439_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP017755.1\|WP_071020027.1\|1801296_1803366_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP017755.1\|WP_071072088.1\|1791451_1792699_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|225715
NZ_CP017755.1\|WP_071020008.1\|1812463_1813465_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182669
NZ_CP017755.1\|WP_071020039.1\|1790749_1791226_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP017755.1\|WP_157903355.1\|1816411_1816864_+\|CzcE-family-metal-binding-protein	unknown	unknown	gnl\|CDD\|374920
NZ_CP017755.1\|WP_071073365.1\|1799744_1801118_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP017755.1\|WP_071020016.1\|1809163_1810909_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP017755.1\|WP_071020005.1\|1813452_1814397_+\|formyltransferase	unknown	unknown	gnl\|CDD\|235902
NZ_CP017755.1\|WP_071020042.1\|1788759_1790745_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_CP017755.1\|WP_071020013.1\|1810916_1811288_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|235094
NZ_CP017755.1\|WP_071020035.1\|1794679_1795660_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP017755.1\|WP_071020029.1\|1798452_1799580_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP017755.1\|WP_071072091.1\|1803718_1804642_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270406
NZ_CP017755.1\|WP_084085499.1\|1805259_1806966_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP017755.1\|WP_071072093.1\|1811300_1812485_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_CP017755.1\|WP_071020002.1\|1814393_1815446_+\|bifunctional-UDP-4-keto-pentose/UDP-xylose-synthase	unknown	unknown	gnl\|CDD\|183375
NZ_CP017755.1\|WP_071020017.1\|1808283_1808853_+\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP017755.1\|WP_071020001.1\|1815457_1816348_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200564
NZ_CP017755.1\|WP_071020032.1\|1795663_1798450_+\|ribosome-associated-ATPase/putative-transporter-RbbA	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NZ_CP017755.1\|WP_071073363.1\|1792885_1794439_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	1.07764e-89
NZ_CP017755.1\|WP_071020027.1\|1801296_1803366_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.24865e-118
NZ_CP017755.1\|WP_071072088.1\|1791451_1792699_-\|MgtC/SapB-family-protein	gnl\|CDD\|225715	COG3174, COG3174, Predicted membrane protein [Function unknown].	5.90054e-52
NZ_CP017755.1\|WP_071020008.1\|1812463_1813465_+\|glycosyltransferase	gnl\|CDD\|182669	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional.	1.00594e-114
NZ_CP017755.1\|WP_071020039.1\|1790749_1791226_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	4.06177e-14
NZ_CP017755.1\|WP_157903355.1\|1816411_1816864_+\|CzcE-family-metal-binding-protein	gnl\|CDD\|374920	pfam16986, CzcE, Heavy-metal resistance protein CzcE. CzcE is involved in heavy-metal resistance. It binds copper, which induces a conformational change.	1.24523e-11
NZ_CP017755.1\|WP_071073365.1\|1799744_1801118_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.07608e-59
NZ_CP017755.1\|WP_071020016.1\|1809163_1810909_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.5251e-64
NZ_CP017755.1\|WP_071020005.1\|1813452_1814397_+\|formyltransferase	gnl\|CDD\|235902	PRK06988, PRK06988, formyltransferase.	0
NZ_CP017755.1\|WP_071020042.1\|1788759_1790745_-\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	1.28394e-172
NZ_CP017755.1\|WP_071020013.1\|1810916_1811288_+\|EamA-family-transporter	gnl\|CDD\|235094	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional.	3.70523e-06
NZ_CP017755.1\|WP_071020035.1\|1794679_1795660_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	9.25909e-29
NZ_CP017755.1\|WP_071020029.1\|1798452_1799580_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	4.6005e-24
NZ_CP017755.1\|WP_071072091.1\|1803718_1804642_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270406	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.17387e-97
NZ_CP017755.1\|WP_084085499.1\|1805259_1806966_-\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.50275e-106
NZ_CP017755.1\|WP_071072093.1\|1811300_1812485_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	7.56398e-153
NZ_CP017755.1\|WP_071020002.1\|1814393_1815446_+\|bifunctional-UDP-4-keto-pentose/UDP-xylose-synthase	gnl\|CDD\|183375	PRK11908, PRK11908, bifunctional UDP-4-keto-pentose/UDP-xylose synthase.	0
NZ_CP017755.1\|WP_071020017.1\|1808283_1808853_+\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	2.00564e-25
NZ_CP017755.1\|WP_071020001.1\|1815457_1816348_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200564	cd10939, CE4_ArnD, Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs. This family is represented by Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD (EC 3.5.1.n3). ArnD plays an important role in the biosynthesis of undecaprenyl phosphate alpha-4-amino-4-deoxy-L-arabinose (alpha-L-Ara4N). It catalyzes the deformylation of 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol. The ArnD-dependent deformylation likely occurs on the inner leaflet of the inner membrane. This family also includes many uncharacterized bacterial polysaccharide deacetylases. All family members show high sequence homology to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA), and are classified within the larger carbohydrate esterase 4 (CE4) superfamily.	2.69778e-143
NZ_CP017755.1\|WP_071020032.1\|1795663_1798450_+\|ribosome-associated-ATPase/putative-transporter-RbbA	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.86677e-91

>NZ_CP017755.1|WP_071072091.1|1803718_1804642_+|amino-acid-ABC-transporter-substrate-binding-protein
MSFFAVPVRAAMFRRLGAFASLATVAAAFAMPAQAQSPVLQKIRDTGTITLGYRESALPFSFADDKGQPAGYAVDLCLRVAEAAKQKLGLPELKVRWLPLTPQNRVPAVVNGLVDLDCAPNTNTLERQKQVAFSVSHYVSTVRLLVRADSGIHSFADLRGKTVVTSAGSTGDRHVRRLKAEYGYRDVYAKDHGESFLLLESGRAQAFVMDDVLLAGLRARAKDPSQYVIVGPALSVEQNALMMSKADPAWKQLVDQTLAKMFAGPDIAALQKRWFQEAIGARGVNLALVPSDQVRAAWKHPSDAVTE
>NZ_CP017755.1|WP_071020027.1|1801296_1803366_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MLASSYDQLLVLFSVLVAMLASYTALDLAGRLTAARGRAAQMWLLAGAVVMGLGIWSMHFVGMLAFRLPIRLGYDLPITLLSLLIAIGASGFALRLVTLPSLPPSRLALGALLMGGAVAGMHYTGMAAMRMRPGIDYEPWWFALSLVIAVAACGAALWIAFRLRHQGRHTHRLRVGAAVLMGLAIAAMHYTGMAAARFPLGTICGAATDGLAGEALALPILVITICVLTMALLTSILDLRMEMRTAVLAASLAAANEELSYLALHDKLTKLPNRALLEDRFEQALRSAARTRSRLAILFIDLDGFKAINDSFGHQIGDQVLAEAAGRIRASAGAGDIVGRLGGDEIVLVSQSDAPEDAGALAARILGSLRDAITVSGHALHISASIGIALYPDNGTDQRTLLRNADAAMYHAKASGRDTCCFFTHSMNADAQARLELAQDLRMALERHELELHYQPKFQAPDNTVCGAEALLRWRHPRRGLLSPDQFLALAEKTGLILPIGTWVLDEACAQLARWHAEGRAQLTMAVNLSATQFCHPALVGTVRAAIERHGLAPQCLTIEITESTAMRDVETSLAILQRLDEMGVRIAIDDFGTGYSSLLYLKRIPASELKIDRGFVRELAQDGEDAAIVSAIIALGQTLNLKIVAEGVETTAQQDFLTRLGCDTLQGYLLGAPVPAVDFPGQAIPAAA
>NZ_CP017755.1|WP_071073365.1|1799744_1801118_+|TolC-family-protein
MAACSTVQVDMPAAPAAPAAFQQVPQAGGSQADLARWWQDWHDPELTRHVEAALRANTDLRVARARVLEARAWAAVADSARYPTLAAQAGAARGFGDLRSPSPVPDRSPDLEAYAGGVSAAWEVDVFGRRASDAEAAAGMALAAEEQLHGVQLAIAADVAQNYLEAQGLQRRLALLDRSLATLGELERYVQARFRAGQALGYDLERVREQVSAREAERPVLQSQIEVRQRRLAVLEGQAAQAAPALGEPGPFHVPPVPAGELPSSVLDRRPDVRASAALVRAQAARLGSAKAELLPRFYLSFVGLDGRIRIDGLPALSGTGGLLGVGVDLPLFNAGRIRSTIAANDARLQAALAEHDKTVLRTLEEVDSAYGVRSGLDQREARLGGTLAIARRNADQSRRLYEAGRRTFEDVLSARLGALQREDELLQAQTGQALATVQLYRALGGGWSPAAGAAAG
>NZ_CP017755.1|WP_071020029.1|1798452_1799580_+|ABC-transporter-permease
MRQWLKNVARLSRKEIFSLFSDATLMILIVFAFTLAVVSVAKGIKAEVSNASVAIVDGDQSALSRHLRDAIQPPYFKPPVDVDRRAIDAELDRGRYIFAIEIPPDFEANVLAGRSPSLQVLVDATAMTQAGLGAAYLQEILTGETLAFLRARNLQAQLPAVAVMRVQFNPNTESYWFTSTMQIVVNITVLSIILVGAAVIREREHGTIEHLLVMPVRASEIAAAKIIANGSVIFLVSLLSLWLVVNLWLRVPLQGSLALFALSTALYLFSVTALGMWLATLAPAMPQFGLLAVPTYAVAYLLSGAATPVQSMPAAMQPVVQFLPTTQFVTLTQAILFRGAGIDIVWPQLLGVTAAGGLFLALALARFRAMLAQQG
>NZ_CP017755.1|WP_071020032.1|1795663_1798450_+|ribosome-associated-ATPase/putative-transporter-RbbA
MAMSGGALPGAIEITGLAHRYGAVQALETVSLTLPGQSTIGLIGPDGVGKSTLLGLIAGVKRIQQGQVSVLGADLRERARREAILPRVAFMPQGLGRNLYPTLSVYENVDFFGRLFGLDGAARAARIRRLLEATGLAPFPDRPAGKLSGGMKQKLGLCCALVHNPDLLILDEPTTGVDPLSRRQFWTLVDELRAEQRGMTVIVATAYMEEAQRFEHLVAMDAGRVLVSDSTAAVLQRAGTRDLEQAYISLLPPARRGDGAGLQIPPRPPVDGEPAIEAEGLTRRFGDFVAVDHVSFRIERSEIFGFLGSNGCGKTTTMKMLTGLLDASSGSARLLGQPIDATDMRTRMRVGYMSQSFSLYEELSVRQNLDLHARLYRMEGEQAQQAVAQALDGFELAPYADERPAALSLGIRQRLQLAAACLHRPEVLILDEPTSGVDPGARDMFWRHLVKLSREARVTIFVSTHFMNEAARCDRISFMHRGRVLAVGTPEALRRQRDAATLEDAFVDYLLEAEGQDAPAATPAAAAAGTKATTGPAGHGLPGGDAAAPAPSALAAPLARIWAFARRESIELARDKLRLAFAILGPVILLLAAAWSVSFDVENVRFAALDRDQSLASRELLEQFAGSRYFVPAGTVRDETEAQQALRAARASLVVEIPPDFGRDLLAGRRPEVAFHIDGSSPFPGATVRTYANAVLLGYVQARARALPVAAPALPMGVETRFVYNEQFRSIYAISPGIVMLALILIPTMLTALGVVREKEMGSITNLYASPAGVGEYLLGKQLPYAGLAMVAYLALVALTITVLGVPLKGSFLALSLGALLFILAATSLGLLVSTFVRSQVAAIFGTAILCLIPSVNFSGLLYPVSTLTGSGYWVGLGFPSSWFQLVSLGSFTKGLGADSFGAMYLALLGFALAYLAGARCLLRKQEA
>NZ_CP017755.1|WP_071020035.1|1794679_1795660_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKNRFRWALLGLLVILLAGAGFWWETAHRTRWPADIAYANGRLEMARVDVAVKYGGRVVELPVHEGDVLAAGALVARQDDSELRAQLAAANAARARAADAMLRARAETDGRAARQRLARLEWSETVKLFDEGQVSAVERDRRRLALEGEQAGVDGAHAALGEARAAEAEAEAQIARLQAVLDETAVRAPVAGRVEYRVVEVGTVLPAGGRVASMLNPDDIYFTIFLPGPQAGRLAIGAAARILLDAFPGEAIPARIGYVASEAQFTPKYVETEGERAKLMYRVKLQLPVEVARRLAPRLKAGMTGAGYVRLDAARSWPPALAVRGE
>NZ_CP017755.1|WP_071073363.1|1792885_1794439_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MDDGALTRALMHGAAYPHAAPGVRCIETHLSRVFLAGEYAYKVRKPVRFDFVDFSTLAARRADCEEELRLNRRLAGALYLDVVPIAAVAGGAGGHEDREADGNTPVRLGGSGPALDYAVRMRRFAQHDLLAARVQAGNVDGAMMDALGRRLADFHADAPRCGSTDATDYGTPARVAATLEECLQGVARLADADGAEAIQCLGRAMRSEALRLAPAMAARRRSGHVRECHGDLHLGNVVVVDGEALPFDCLEFNAGLRWIDSISDTAFLYMDLIHHGRRDLAYRFLNAYLERGGDYAGLGLLPFYAALRALVRARVGLERRHQCAAAGADAAPAAGWRALLELAETLLSRRRGAILLMHGLSGSGKSTVAARLAERGGMVRVRADVERKRPGAPPAGGWYAPAAGAATYRRLLAACRLGACAGFPMIADATFLARARRECFAAQAARLRLPFVIVHCEATVDTLRARISARAQARNDPSDADLEVLGRQLREQEPLCAAELRATTSASDADTLAARFA
>NZ_CP017755.1|WP_071072088.1|1791451_1792699_-|MgtC/SapB-family-protein
MEHDYVAFSVALGIGLAIGLERERSNAGGDEQVPAGLRTFTVASLAGAVAARLPGPLVLPAVLLATGALACLAYHRTSDRDPGMTTELALLCVVLLGALATSEATLAAGAATVVLLLLHGKAWLHHFARQILSEQELRDALVLAAAALVVWPLLPDRYLGPFKAWNPHTLWLIAVLVMLMGAAGHIAVRWLGSQLGLPMAGLFGGFVSSSATIASMAALARKEPDKAQAAVAAALLSTVSTFVQMILLLAATSLATLRQLAIPLAAGLAVIAAFGGLWAWRSTHAEQAPEESPQGRAFDWRVAAGFALMTAFLLWLAAAAQAWLGATALVAVAAVAGFADAHAATASIGAQVAAGRLPVGSAMWPVLAAFSTNTLTKIGLATAAGGSRFALQVGAGLVAAAGATWLGTLAALSLS
>NZ_CP017755.1|WP_071020039.1|1790749_1791226_-|winged-helix-turn-helix-transcriptional-regulator
MNSIDALRFAFTGQLMLAGRQWRQISQAAVTSYGISAAAAGPLLFIRRLGGGVRQVTLADYVGLEGASLVRLLDQLSAAGLVRREVDASDRRANALWLTEAGEELAAKIEVDLKRIRSQVFAHIPAQDLEGALRVLDALARAADSVVVPQSPAPSQEA
>NZ_CP017755.1|WP_071020042.1|1788759_1790745_-|FUSC-family-protein
MGSTWPSARDWIFSTKAFVASMLALFIALYIGLPRPYWAMATVYVVAHPLTGATRSKSMYRVLGTLLGAAASVALVPSLVNTPPLLMAAVAVWVAVLLYVALLDRSPRSYLFMLAAYTLPMVALPAVDHPGGVFDLAIARSEEICLGIICASVVGAVVFPAKVSNVLRDRLAQWMGDAAQWAGDMLSLRDAGAAVSLHQSRHRMAADILALDQLISQLSYDTETAARIRDAKELRGRMTMLLPVLASLASLVETMQRDEAGVPDQLAARMTAVSAWIRGEAAAPPALEENTPPALATAVASTAYERLRELTALWQDCVALQRRLGEAAPAGDWQPVFRRWNVGAARHYDHGMLLFSTGTTALGIFCMGMVWILSGWADGASAVALGAVSCCFFAALDEPAPMIRSFFIWNVVCVLLAMVYLFMILPRAHDFEMLVAMFAIPYLLFGVMIAQPRLALIAVPLAMVTATDIGLQGSYNADFQTFFNTNVAGVAGILFALVWTLLVRPFGTAAAARRLVRASWGDIARNATGRAPHEHDHLRARMLDRLAQLVPRLAASENERSTDGFTEVRVELSTLALQRELPALPEASQHAVRRVLQSVAGYYRDRLEAKADAPPEALQRRLMRAMQGVAERADQASRTAMSALVEMEVALFSTSPVNGKQ
>NZ_CP017755.1|WP_084085499.1|1805259_1806966_-|HAMP-domain-containing-protein
MRDRRIADSHCLTDPYNNAPQAEGVTVKLSSLTIKTKLLLGFGTLAAIAIVICAMSLRALSQTTEAFSAYIHGLDARAEMAVKVRTAVDRRAIAARNLVLVTQQADLDIEKADVAQAHEDVKNNLRRLKEMALSAPAGAQELVAEIDRVETRYGPVALDIVSLALAKRNDEAIAKMNNECRPLLAALVKATEAYAAFTRTRQEETIRQMEADYALQRQLLIGISIAAVALAVIGGLLLTRAITRPIERAVDAARAVAQGELGQRIDVESDDETGRLLRALRDMTARLAQIVNGVRDSSGRITGATGEIAAGNVDLSARTEQQAASLEETAASIEELTVTVRQNSENAREASTLAHDAADVAQKGSTAVGRVVDTMQQISASSEKIAEITGIIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKELISVSVQQVHAGSTLAGEAGETMGVVTQAVARVNRIIEEIAQASGEQSRGIEQVNQAISQIDHVTQQNATLVSEAASASRAMEEEARRLKEAVAFFRLPVARSGGRLAPAEHGSPLGDHPDYAAA
>NZ_CP017755.1|WP_071020017.1|1808283_1808853_+|HdeD-family-acid-resistance-protein
MLLYYAKLWWVVALRGIFAVLFGLCAFFAPIATLAVLILIFGAYAAADGVVALAMAISGKERDGSDRWILALQGVLGLGIGALTLFNPAVTALSLLLYIAAWTLATGVLQIVAAVRLRKEIPNEWWMILAGLASIALAFLLLWNPVAGALAVLWMIASWATVCGILLIGVAFRLRRAHHDHLHGKPLAA
>NZ_CP017755.1|WP_071020016.1|1809163_1810909_+|glycosyltransferase-family-39-protein
MRSSSTSRYAGLPVAAIALVSLFILLVWFGTLDARHLLRSDEGRYAEIAREMFASGDWVTIRYNDLKYFEKPPFHMWVTALTYTLFGLGDWQARLCVALSGMIGLVASMMASTRWFGARAGLLTGLVLVAAPMWSVAAHFNSLDMTLSGAMACVLAFMLLAQHPDASPAARRGWMWACWLAMGVAILTKGLVGIALPGLVLVLYTLISRDFALWRRIHLFSGIALMLVVTVPWFWLVSERNPEFPQFFFIHEHWQRYTSKVHSRSGPVYYFVPLLIAGFLPWLGLFPRMWQVVRGEGQALRSGARPFRPALLTAIWAIAIFVFFSLSDSKLPGYIVPIFPALGILAGSALEHITERSWRRQMLAMAVICAIGLAASPYVATLNSDNTPNALYRPFAVWVGAAFVALLAGIWLSYRVLRRRGVFASVVTYSVAMFCGFTIALLGHEVMGRKSSGADMVPAIKAVLTDDMPLYGVRMLDHTLPFYLQHTLVMVEAPDELDFGTKQEPQKWVPTLDGFVAKWQDGQHAMAIMGADTYEHLRQRHVTMYKIAQDTRRVVVSNFAPPGQAQAAPAASVEPAASAPQ
>NZ_CP017755.1|WP_071020013.1|1810916_1811288_+|EamA-family-transporter
MSLSTFAFIFTGVLLNACAQLLLKAGVNAVGAITLDRATLFATALRVLTQWPVLAGLTLYVVSVGVWIVGLSRVDVSIAYPMLSLGYVVNALAAWWLFGEMIGPLRVAGILLILAGVFLIARS
>NZ_CP017755.1|WP_071072093.1|1811300_1812485_+|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MSASVSPAEAFLPFVRPSIDEAAIAEVGKVLASGWITSGPKMQAFEEALSALFGGRPVRTFANGSATMEIALRIADIGPGDEVITTPITWVATANVVLTVGARPVFVDIDPRTRNIDLDAVEAAITPRTRAIMPVYLSGLPVDMERLYAIAARHQLRVIEDAAQAIDSRWRGQRIGAFGDLASFSFQANKNITCVEGGCLVMNSPEEALRAERLRLQGVIRTGMDGMDVEEPGGKFNLTDVNAAIGLAQLAHLDAITARRAALAETYFRCAEAAGLRDLGIGLPLPLDPHEATTNWHMFQVVLPVERFAGEHPLGARAAVMEAMREQGVGTGVHYPPVHLFSYYRSLGWREGMLPHAERIGRGIVTLPMFPAMRDADVERVCATLSKTCKRLFK
>NZ_CP017755.1|WP_071020008.1|1812463_1813465_+|glycosyltransferase
MQTPLQMSPVEVSVIIPVYNEEDGLQALFDRLYPVLDGLGESYEIIFVNDGSRDRSPQLLAAQFHRRPDVTRVVLFNGNFGQHMAILAGFEHSRGKIVVTLDADLQNPPEEIPRLVASMREGHDYVGTIRRERNDSAFRRIASKAMNRLRERITRIKMTDQGCMLRAYDRNIVDTVNACREVNTFIPALAYTFSANPIEIVVEHEQRHAGESKYSLFQLIRLNFDLVTGFSIVPLQWFSAIGTLLSIASAGLVVLLLARRFLFGAEVQGVFTLLAFNFFLVGIMLFGIGLLGEYIGRIYQEVRNRPRFRIQAVLEAGPEGAARPASTEAPCAQ
>NZ_CP017755.1|WP_071020005.1|1813452_1814397_+|formyltransferase
MRAVVFAYHNVGDRCLRVLHARGVEVALVVTHRDRADENIWFRRVADTAAELGLPCIYGEDPADPALAEAVAAARPDMIFSFYYRAMIPQAVLSLAPRGAFNMHGSLLPKYRGRVPVNWAVLHGENETGATLHAMEAKPDAGYIVGQTAVPILPDDTAAQVFDKVTVAAEQTLWGVLPEMLAGRTPQHPNRLEQGSYFSGRKPEDGRIDWSQPAAAVYNLIRAVAPPYPGAFTDLGGRRFVVAQARRPAPARQASLAAALQGGAPGLHVVQDSIVGLCGDGGLVLVHELQSDGATLAPAAFASLLTASTKEENR
>NZ_CP017755.1|WP_071020002.1|1814393_1815446_+|bifunctional-UDP-4-keto-pentose/UDP-xylose-synthase
MKKVLILGVNGFIGHHLTRRILETTSWEVYGMDMSSDRLGDLVEHPRMHFFEGDITINKEWIEYNIRKCDVVLPLVAIATPATYVRQPLRVFELDFEANLPIVRAAVKYGKHLVFPSTSEVYGMCTDGEFDPESSSLVYGPINKPRWIYACSKQLMDRVIHAYGMEQGLNYTLFRPFNWIGAGLDSIFESKEGSSRVVTQFLGHIVRGEPIKLVDGGEQKRAFADIADGISALMRIIENPNGVASGKIYNIGNPGNIHSVRELAEMMLKMAGDYPEYAEEAKKTQIIETSSGDFYGKGYQDVQHRVPKIDNTMTELGWKPEFNMEQALRRIFEAYRGKVVEARTLVDSAS
>NZ_CP017755.1|WP_071020001.1|1815457_1816348_+|polysaccharide-deacetylase-family-protein
MARIALKVDVDTLRGTREGVPALLNMLEKVRAEATFLYSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVLLPGPDIGRRGAAQMRAAQAAGHECGIHTWDHVYWQDNVRGRDAAWTRRQMQSAFDRFVDIFGEAPPTHGAAGWQMNDEAFLQIDDWGMAYASDGRGVSPYIPTVGGRPCRHVQMPTTLPTLDELIGVDGLTEDNVHEAVLKLSADGRDHVFTLHTELEGGKLAPVFMRLLQGWRAQGHELVSMATYYRHLDRSTLPQLPVSWGSIPGRSGELIIQP
>NZ_CP017755.1|WP_157903355.1|1816411_1816864_+|CzcE-family-metal-binding-protein
MLPWPTARCAGFRHAIPACILTGDLHDDTVPQWSGRLRAGRHPGLGRSTRRGQRRRRAPAIIRFASRALAGRARPARNVSRTVVVAPRQRNIDVEAGKSVAFRFGTQKAAWAFAPCSDAGALERVRKFSGIPAALGIWMRIRPGSMFSGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3003576 : 3022197

Escherichia_phage(23.08%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071018177.1\|3003576_3004038_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	1.3e-42	65.4
WP_071072831.1\|3004039_3004234_-	hypothetical protein	NA	NA	NA	NA
WP_071072832.1\|3004311_3004911_-	hypothetical protein	F5B3N7	Synechococcus_phage	8.5e-05	45.0
WP_084545849.1\|3004933_3005584_-\|tail	tail fiber protein	A0A1W6JT73	Escherichia_phage	8.6e-35	55.5
WP_157903382.1\|3005599_3008737_-	hypothetical protein	A0A2L0V157	Salmonella_phage	3.2e-50	28.9
WP_157903383.1\|3008812_3009223_-	hypothetical protein	NA	NA	NA	NA
WP_071072838.1\|3009222_3009774_-	hypothetical protein	S4TND4	Salmonella_phage	1.7e-12	30.4
WP_071072839.1\|3009770_3010394_-	hypothetical protein	Q7Y3Z8	Yersinia_phage	3.3e-20	37.9
WP_071072841.1\|3010397_3011753_-	hypothetical protein	A0A2H4J9A1	uncultured_Caudovirales_phage	9.5e-12	54.2
WP_071018161.1\|3011755_3012088_-	hypothetical protein	NA	NA	NA	NA
WP_071018159.1\|3012099_3012516_-	hypothetical protein	NA	NA	NA	NA
WP_071072843.1\|3012589_3013798_-	hypothetical protein	A0A0S0MV10	Pseudomonas_phage	2.5e-32	31.4
WP_071018155.1\|3013872_3014277_-	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	1.0e-06	31.5
WP_071072852.1\|3015156_3016539_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	1.3e-80	43.0
WP_071072854.1\|3016535_3017471_-	hypothetical protein	V5URT9	Shigella_phage	7.0e-46	58.9
WP_071072856.1\|3017543_3017855_-	hypothetical protein	NA	NA	NA	NA
WP_071022133.1\|3018251_3018959_+	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	8.7e-25	34.8
WP_071038990.1\|3019110_3019296_+	hypothetical protein	NA	NA	NA	NA
WP_071038993.1\|3019367_3019601_+	hypothetical protein	NA	NA	NA	NA
WP_071018145.1\|3019581_3019944_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_071072858.1\|3020244_3022197_+	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	1.3e-06	27.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017754

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

144485 : 219672

Ralstonia_virus(30.77%)

tRNA,protease,holin,plate,portal,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071037744.1\|144485_146450_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_071037743.1\|146675_147551_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA
WP_071037742.1\|147553_148558_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA
WP_071010414.1\|148682_149627_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.3e-17	25.3
WP_071010415.1\|149891_150635_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-10	25.9
WP_071010417.1\|150648_152478_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A1M7XV31	Cedratvirus	1.5e-15	30.0
WP_071010419.1\|152481_153534_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_071010420.1\|153990_155145_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_084084902.1\|155439_155814_-	hypothetical protein	NA	NA	NA	NA
WP_083383864.1\|156358_157378_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_071010422.1\|157404_158289_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_071010423.1\|158503_159712_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_071010425.1\|159788_160532_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_071010427.1\|160561_161338_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.8e-14	24.4
WP_071037738.1\|161722_163336_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	9.8e-56	30.6
WP_071010430.1\|163570_164449_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071068419.1\|164543_165473_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_071010432.1\|165585_166014_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_167366682.1\|166010_168461_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.6e-111	38.9
WP_071010434.1\|168669_168870_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_071068421.1\|168953_169676_-	OmpW family protein	NA	NA	NA	NA
WP_071037735.1\|169888_170869_-	delta(1)-pyrroline-2-carboxylate reductase family protein	NA	NA	NA	NA
WP_071068422.1\|171020_173357_-	penicillin-binding protein 1C	NA	NA	NA	NA
WP_071068423.1\|173353_174055_-	lysoplasmalogenase	NA	NA	NA	NA
WP_071068424.1\|174051_180129_-	alpha-2-macroglobulin	NA	NA	NA	NA
WP_071010440.1\|180216_180690_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_071010441.1\|180900_181842_+	phenylalanine 4-monooxygenase	NA	NA	NA	NA
WP_071068425.1\|182026_182338_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_071010443.1\|182456_183161_+	response regulator transcription factor	NA	NA	NA	NA
WP_071010444.1\|183181_184756_+	sensor histidine kinase	NA	NA	NA	NA
WP_071010445.1\|184775_185321_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_071010446.1\|186621_186900_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.3e-11	44.4
WP_071068426.1\|187125_188097_+	DUF2272 domain-containing protein	NA	NA	NA	NA
WP_071037730.1\|188249_189014_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_071068427.1\|189070_190045_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_071068428.1\|190237_191158_-	EamA family transporter RarD	NA	NA	NA	NA
WP_071010451.1\|191301_192429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_084545617.1\|192863_194837_+	maltoporin	NA	NA	NA	NA
WP_071068429.1\|194820_195567_-	aquaporin family protein	NA	NA	NA	NA
WP_071010453.1\|195773_196265_-	hypothetical protein	NA	NA	NA	NA
WP_157903128.1\|196508_197375_+	class D beta-lactamase	NA	NA	NA	NA
WP_084545437.1\|197790_198981_+	N-6 DNA methylase	NA	NA	NA	NA
WP_157903129.1\|198964_199882_-	hypothetical protein	NA	NA	NA	NA
WP_071068431.1\|199878_201876_-	hypothetical protein	NA	NA	NA	NA
WP_157903130.1\|201838_202546_-	hypothetical protein	NA	NA	NA	NA
WP_071068432.1\|203976_205008_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	6.7e-151	79.4
WP_071068433.1\|205004_206786_-\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	6.1e-285	80.9
WP_071068434.1\|206929_207802_+\|capsid	GPO family capsid scaffolding protein	A4PE29	Ralstonia_virus	1.7e-78	54.9
WP_071068435.1\|207848_208190_+	hypothetical protein	A4PE30	Ralstonia_virus	1.0e-31	70.7
WP_071068436.1\|208193_209375_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	1.8e-06	34.1
WP_157903131.1\|209642_210929_+	hypothetical protein	NA	NA	NA	NA
WP_071068437.1\|211320_211902_+\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	3.0e-55	63.9
WP_071010455.1\|213257_213959_-	response regulator	NA	NA	NA	NA
WP_071010456.1\|214012_216442_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_071068439.1\|216438_217290_-	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_071010458.1\|217299_218670_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_071010459.1\|218811_219672_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA

DBSCAN-SWA_2

1302181 : 1310505

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071068711.1\|1302181_1303357_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	3.3e-109	48.2
WP_071014928.1\|1303663_1304728_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.6e-86	49.0
WP_071068712.1\|1304717_1305635_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.8e-23	34.0
WP_071068713.1\|1305645_1306524_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.6e-98	58.2
WP_071068714.1\|1306541_1307090_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-53	58.4
WP_071068715.1\|1308492_1310505_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	3.7e-20	29.5

DBSCAN-SWA_3

1487280 : 1496229

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071011649.1\|1487280_1488666_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.9e-72	36.2
WP_071011651.1\|1488737_1489685_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-12	26.4
WP_071011652.1\|1489750_1490743_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.2e-27	33.1
WP_071068751.1\|1490907_1491252_+	hypothetical protein	NA	NA	NA	NA
WP_071011655.1\|1491646_1492951_+	pyrimidine utilization transport protein G	Q9KX94	Enterobacteria_phage	2.8e-146	64.9
WP_071068752.1\|1493036_1493939_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.3e-53	40.2
WP_071068753.1\|1494063_1495170_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_071068754.1\|1495305_1496229_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.7e-39	33.5

DBSCAN-SWA_4

2012374 : 2021299

Burkholderia_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071069062.1\|2012374_2012554_+	hypothetical protein	I6NRM1	Burkholderia_virus	3.2e-08	52.6
WP_071069064.1\|2012609_2012912_+	hypothetical protein	NA	NA	NA	NA
WP_071069066.1\|2013628_2013958_+	hypothetical protein	NA	NA	NA	NA
WP_071069068.1\|2014011_2014236_+	hypothetical protein	NA	NA	NA	NA
WP_071069070.1\|2014389_2015565_-	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	7.2e-165	75.2
WP_071069072.1\|2015574_2016315_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	5.1e-52	48.9
WP_071069074.1\|2016311_2016833_-	hypothetical protein	A4JWV5	Burkholderia_virus	3.7e-57	64.7
WP_071069076.1\|2017012_2017711_-	SOS response-associated peptidase	A0A2H4J991	uncultured_Caudovirales_phage	2.6e-29	36.7
WP_071069078.1\|2017755_2019684_-	hypothetical protein	Q7M2A9	Enterobacteria_phage	6.3e-17	34.3
WP_071069080.1\|2019869_2020205_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071069082.1\|2020426_2021299_-	GIY-YIG nuclease family protein	A0A088F856	Sulfitobacter_phage	1.9e-05	41.9

DBSCAN-SWA_5

3012246 : 3118013

150

Burkholderia_phage(28.0%)

tRNA,tail,protease,transposase,head,portal,terminase,capsid,integrase

attL 3008046:3008098|attR 3109662:3109714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3008046:3008098	attL	NA	NA	NA	NA
WP_071070844.1\|3012246_3012612_-	DUF1353 domain-containing protein	A0A1L2CVI8	Pectobacterium_phage	1.1e-15	47.8
WP_071069769.1\|3012635_3013112_-	hypothetical protein	NA	NA	NA	NA
WP_071069770.1\|3013163_3013382_-	hypothetical protein	NA	NA	NA	NA
WP_071036663.1\|3013371_3013860_-	hypothetical protein	NA	NA	NA	NA
WP_071069772.1\|3013921_3015427_-	hypothetical protein	A0A0B4ZZU0	Achromobacter_phage	9.1e-64	37.9
WP_071069774.1\|3015442_3015829_-	hypothetical protein	NA	NA	NA	NA
WP_071036656.1\|3015900_3016236_-	ammonia monooxygenase	A0A291AUV3	Sinorhizobium_phage	5.2e-28	49.6
WP_071069776.1\|3016232_3016715_-	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	3.0e-45	63.4
WP_071069778.1\|3016704_3017151_-	hypothetical protein	A0A0U5LBV3	unidentified_phage	6.3e-29	55.7
WP_071040206.1\|3017235_3017418_-	hypothetical protein	NA	NA	NA	NA
WP_071070846.1\|3017427_3018135_-\|tail	phage tail protein	A9YX14	Burkholderia_phage	1.9e-59	57.5
WP_071069780.1\|3018864_3019524_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.8e-72	58.6
WP_071069783.1\|3019525_3020710_-	hypothetical protein	A9YX12	Burkholderia_phage	7.6e-114	58.9
WP_071069785.1\|3020706_3021060_-	hypothetical protein	A9YX11	Burkholderia_phage	8.2e-32	64.1
WP_071069787.1\|3021098_3021605_-	Rha family transcriptional regulator	A0A0K0N5U2	Gordonia_phage	6.3e-09	37.6
WP_157903278.1\|3021745_3022408_-	hypothetical protein	A9YX06	Burkholderia_phage	4.3e-82	72.3
WP_071069791.1\|3022484_3023408_-	hypothetical protein	A9YX04	Burkholderia_phage	1.7e-60	48.9
WP_157903279.1\|3023407_3023719_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.0e-17	48.5
WP_084545580.1\|3023715_3024342_-	hypothetical protein	A0A0P0IKS1	Acinetobacter_phage	6.8e-21	42.5
WP_071069795.1\|3024338_3026204_-	hypothetical protein	A0A2H4J9N7	uncultured_Caudovirales_phage	2.6e-84	45.6
WP_167366675.1\|3026193_3026349_-	hypothetical protein	NA	NA	NA	NA
WP_084545581.1\|3026384_3026831_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	2.2e-13	32.2
WP_071069797.1\|3026843_3027284_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	5.1e-39	53.4
WP_071069799.1\|3027292_3029110_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	6.9e-58	43.0
WP_071069801.1\|3029171_3029753_-	hypothetical protein	A9YX29	Burkholderia_phage	1.7e-63	62.5
WP_071069803.1\|3029756_3030128_-	hypothetical protein	A9YX28	Burkholderia_phage	1.2e-28	53.7
WP_157903224.1\|3030134_3030293_-	hypothetical protein	NA	NA	NA	NA
WP_157903225.1\|3030289_3031102_-	hypothetical protein	NA	NA	NA	NA
WP_157903226.1\|3031098_3031458_-	hypothetical protein	NA	NA	NA	NA
WP_071069810.1\|3031599_3032133_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.7e-39	52.6
WP_071069811.1\|3032129_3032513_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	4.2e-42	66.7
WP_071069813.1\|3032552_3033014_-	hypothetical protein	NA	NA	NA	NA
WP_071069816.1\|3033015_3034104_-	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	1.4e-146	83.7
WP_071069819.1\|3034172_3034679_-	hypothetical protein	NA	NA	NA	NA
WP_084545582.1\|3034688_3036143_-	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	2.4e-122	61.6
WP_071069823.1\|3036309_3036831_-	hypothetical protein	A9YX01	Burkholderia_phage	2.7e-47	53.2
WP_071069825.1\|3036835_3037573_-\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	2.7e-69	57.0
WP_071069827.1\|3037569_3039015_-	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	1.5e-196	70.0
WP_071069829.1\|3039036_3040587_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.1e-112	44.9
WP_071069831.1\|3040537_3040948_-	hypothetical protein	NA	NA	NA	NA
WP_157903227.1\|3041193_3041523_+	hypothetical protein	NA	NA	NA	NA
WP_071069835.1\|3041519_3042902_-	chromosome partitioning protein ParB	A0A1P8VV91	Erythrobacter_phage	4.9e-80	30.5
WP_071069837.1\|3043095_3043677_+	hypothetical protein	NA	NA	NA	NA
WP_071069839.1\|3043773_3043974_+	hypothetical protein	NA	NA	NA	NA
WP_071069841.1\|3044058_3044661_-	DNA-binding protein	Q3HR05	Burkholderia_phage	2.5e-49	53.1
WP_071040239.1\|3044689_3045160_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	3.9e-45	59.6
WP_071069845.1\|3046204_3046522_-	hypothetical protein	NA	NA	NA	NA
WP_071069846.1\|3046579_3047629_-	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	2.6e-105	55.5
WP_071069852.1\|3048237_3048549_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071069854.1\|3048862_3049099_-	hypothetical protein	NA	NA	NA	NA
WP_157903228.1\|3049501_3050452_+	helix-turn-helix domain-containing protein	A0A1W6JNY2	Morganella_phage	5.1e-20	44.2
WP_157903229.1\|3050459_3051296_+	hypothetical protein	NA	NA	NA	NA
WP_071069860.1\|3051608_3052034_+	hypothetical protein	NA	NA	NA	NA
WP_071069862.1\|3052075_3052291_-	hypothetical protein	NA	NA	NA	NA
WP_071069864.1\|3052468_3052816_+	hypothetical protein	NA	NA	NA	NA
WP_071069866.1\|3052819_3053116_+	hypothetical protein	NA	NA	NA	NA
WP_071069868.1\|3053112_3053586_+	hypothetical protein	A9YX19	Burkholderia_phage	4.7e-59	76.4
WP_157903230.1\|3053582_3053741_+	hypothetical protein	NA	NA	NA	NA
WP_071069870.1\|3053868_3054663_+	nuclease	J7HXJ4	Pseudomonas_phage	2.8e-56	47.2
WP_157903231.1\|3054670_3055162_+	hypothetical protein	I2GUC6	Acinetobacter_phage	1.3e-30	46.8
WP_071069872.1\|3055158_3056235_+	hypothetical protein	H2BD49	Pseudomonas_phage	3.9e-77	54.2
WP_071069875.1\|3056246_3056927_+	hypothetical protein	J7I0T4	Pseudomonas_phage	1.0e-09	40.2
WP_071069877.1\|3056923_3058663_+	AAA family ATPase	H2BD46	Pseudomonas_phage	6.8e-79	38.7
WP_071038316.1\|3058662_3058845_+	hypothetical protein	NA	NA	NA	NA
WP_071069879.1\|3058841_3059156_+	hypothetical protein	NA	NA	NA	NA
WP_071069881.1\|3059158_3059410_+	hypothetical protein	NA	NA	NA	NA
WP_071069883.1\|3059406_3059679_+	hypothetical protein	B1GS76	Salmonella_phage	2.9e-05	39.8
WP_071069885.1\|3059675_3060578_+	hypothetical protein	Q3HQV8	Burkholderia_phage	1.9e-08	55.9
WP_071069888.1\|3060574_3062446_+	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.5e-172	62.0
WP_071069890.1\|3062448_3062973_-	hypothetical protein	NA	NA	NA	NA
WP_071069892.1\|3062971_3063697_+	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	1.6e-37	42.4
WP_071069893.1\|3063684_3063897_+	hypothetical protein	NA	NA	NA	NA
WP_071069895.1\|3063893_3064430_+	DUF1643 domain-containing protein	A0A142F2K6	Mycobacterium_phage	1.2e-23	41.5
WP_157903232.1\|3064426_3064603_+	hypothetical protein	NA	NA	NA	NA
WP_084545583.1\|3064599_3064899_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_071069897.1\|3064895_3066014_+\|integrase	tyrosine-type recombinase/integrase	Q8W6R7	Burkholderia_virus	4.0e-72	42.6
WP_071069899.1\|3066460_3066751_+	hypothetical protein	NA	NA	NA	NA
WP_071069900.1\|3066761_3067022_+	hypothetical protein	NA	NA	NA	NA
WP_071070854.1\|3068404_3068776_-	hypothetical protein	NA	NA	NA	NA
WP_071069903.1\|3068775_3069249_-	lysozyme	K7P7Q3	Enterobacteria_phage	1.0e-21	40.1
WP_071069905.1\|3069250_3069448_-	hypothetical protein	NA	NA	NA	NA
WP_071069906.1\|3069912_3070245_-	hypothetical protein	NA	NA	NA	NA
WP_071069908.1\|3070241_3071423_-	hypothetical protein	NA	NA	NA	NA
WP_071069910.1\|3071425_3071635_-	hypothetical protein	NA	NA	NA	NA
WP_071069912.1\|3071634_3071901_-	hypothetical protein	I3UM19	Rhodobacter_phage	2.6e-06	41.8
WP_071069915.1\|3071961_3072564_-	hypothetical protein	NA	NA	NA	NA
WP_071069916.1\|3072572_3073211_-\|tail	tail fiber protein	A0A0F6YNJ5	Sinorhizobium_phage	3.1e-29	43.4
WP_157903233.1\|3073228_3076306_-	hypothetical protein	A0A2L0V157	Salmonella_phage	2.5e-52	29.9
WP_162287347.1\|3076423_3076825_-	hypothetical protein	A0A2L0V149	Salmonella_phage	1.1e-11	37.4
WP_071069921.1\|3076824_3077376_-	hypothetical protein	NA	NA	NA	NA
WP_071069923.1\|3077372_3078035_-	hypothetical protein	S4TSP7	Salmonella_phage	2.2e-22	32.7
WP_071069925.1\|3078034_3080920_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	5.8e-67	28.0
WP_084545586.1\|3080912_3081347_-	hypothetical protein	A0A1W6JP15	Morganella_phage	5.9e-08	32.4
WP_071069927.1\|3081346_3081592_-	hypothetical protein	NA	NA	NA	NA
WP_071069928.1\|3081636_3082041_-	hypothetical protein	G9FHI3	Rhodococcus_phage	4.5e-10	41.7
WP_071069930.1\|3082042_3082684_-\|tail	phage tail protein	NA	NA	NA	NA
WP_071069932.1\|3082750_3083155_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_071069934.1\|3083147_3083477_-\|head	phage head closure protein	Q6JIM4	Burkholderia_virus	7.2e-14	40.0
WP_071069936.1\|3083479_3084016_-	hypothetical protein	NA	NA	NA	NA
WP_071069938.1\|3084019_3084211_-	hypothetical protein	NA	NA	NA	NA
WP_071069941.1\|3084272_3085652_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	3.0e-77	40.0
WP_071069943.1\|3085674_3086370_-\|head,protease	HK97 family phage prohead protease	B0VK32	Azospirillum_phage	1.7e-49	49.8
WP_071069945.1\|3086347_3087559_-\|portal	phage portal protein	B0VK31	Azospirillum_phage	1.9e-75	41.1
WP_071069948.1\|3087558_3087750_-	hypothetical protein	NA	NA	NA	NA
WP_071069950.1\|3087746_3089402_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	3.0e-241	73.5
WP_071069952.1\|3089404_3089872_-\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	1.4e-39	66.7
WP_071069954.1\|3089971_3090184_-	hypothetical protein	NA	NA	NA	NA
WP_071070858.1\|3090180_3090471_-	HNH endonuclease	H2BDK0	Pseudomonas_virus	5.4e-05	37.3
WP_071069956.1\|3090711_3091323_-	hypothetical protein	Q3HR05	Burkholderia_phage	6.6e-29	41.3
WP_157903234.1\|3091594_3092164_-	hypothetical protein	NA	NA	NA	NA
WP_157903235.1\|3092166_3092520_-	hypothetical protein	NA	NA	NA	NA
WP_084545587.1\|3092603_3093110_-	DUF1064 domain-containing protein	A0A1X9HVJ6	Ruegeria_phage	4.2e-13	42.7
WP_084545654.1\|3093106_3094084_-	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	4.7e-29	70.8
WP_071069965.1\|3094174_3094357_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_071069967.1\|3094358_3094655_-	DUF1364 family protein	G8C7V5	Escherichia_phage	6.5e-06	34.8
WP_071069970.1\|3094654_3094951_-	hypothetical protein	NA	NA	NA	NA
WP_071069972.1\|3095121_3095541_-	hypothetical protein	NA	NA	NA	NA
WP_071069974.1\|3095537_3095765_-	hypothetical protein	NA	NA	NA	NA
WP_071069976.1\|3095761_3095986_-	hypothetical protein	NA	NA	NA	NA
WP_071069978.1\|3096301_3096808_+	hypothetical protein	NA	NA	NA	NA
WP_071069980.1\|3096788_3097121_-	hypothetical protein	NA	NA	NA	NA
WP_084545588.1\|3097117_3097402_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071069982.1\|3097485_3098208_+	hypothetical protein	G8GWB1	Rhodobacter_phage	3.5e-13	28.8
WP_084545589.1\|3098252_3098819_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_071069984.1\|3098951_3099401_+	hypothetical protein	NA	NA	NA	NA
WP_157903237.1\|3099397_3099559_+	hypothetical protein	NA	NA	NA	NA
WP_071069986.1\|3099686_3100223_+	hypothetical protein	NA	NA	NA	NA
WP_071069988.1\|3100219_3100453_+	hypothetical protein	NA	NA	NA	NA
WP_071069990.1\|3100449_3100791_+	hypothetical protein	NA	NA	NA	NA
WP_071069992.1\|3100919_3101846_+	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	3.2e-51	39.9
WP_071069995.1\|3101842_3102328_+	hypothetical protein	NA	NA	NA	NA
WP_157903238.1\|3102324_3102576_+	hypothetical protein	NA	NA	NA	NA
WP_071069997.1\|3102572_3102791_+	hypothetical protein	NA	NA	NA	NA
WP_157903239.1\|3102975_3103125_+	hypothetical protein	NA	NA	NA	NA
WP_071069999.1\|3103124_3103364_+	hypothetical protein	NA	NA	NA	NA
WP_071070001.1\|3103360_3104017_+	hypothetical protein	K7R9L4	Vibrio_phage	2.5e-18	33.2
WP_071070003.1\|3104013_3105627_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	9.9e-149	53.8
WP_071070864.1\|3105629_3105869_-	hypothetical protein	NA	NA	NA	NA
WP_157903240.1\|3105905_3106178_-	hypothetical protein	NA	NA	NA	NA
WP_071070007.1\|3106289_3106514_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_071068883.1\|3107183_3108212_+\|transposase	IS21-like element ISBcen13 family transposase	A0A2L1IVA1	Escherichia_phage	6.2e-72	43.8
WP_006482411.1\|3108208_3108982_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.2e-81	56.9
WP_071013600.1\|3109822_3110263_-	MerR family transcriptional regulator	NA	NA	NA	NA
3109662:3109714	attR	NA	NA	NA	NA
WP_071013602.1\|3110393_3110810_-	integration host factor subunit alpha	A0A1P8CWT5	Bacillus_phage	3.8e-12	40.0
WP_071070010.1\|3110894_3113351_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_071070012.1\|3113471_3114515_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	4.0e-26	38.3
WP_071070014.1\|3114798_3115155_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_006575466.1\|3115182_3115380_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_083384108.1\|3115535_3116057_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-12	31.7
WP_071038236.1\|3116105_3118013_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.1e-122	36.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017755

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017754

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection