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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017640 Methylobacterium sp. C1 chromosome, complete genome 7 crisprs csa3,cas3,WYL,DEDDh 0 1 4 0

Results visualization

1. NZ_CP017640
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_1 2777141-2777260 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_2 4022207-4022296 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_3 4065130-4065221 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_4 4128700-4128875 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_5 4377346-4377439 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_6 4428165-4428259 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017640_7 5239493-5239593 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NC_022995 Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence 271798-271827 6 0.8
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 335150-335179 6 0.8
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP015747 Shinella sp. HZN7 plasmid pShin-11, complete sequence 2110-2139 7 0.767
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 103415-103444 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP017148 Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence 19315-19344 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP040824 Paraoceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence 15400-15429 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 487759-487788 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 464741-464770 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 81292-81321 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 804824-804853 8 0.733
NZ_CP017640_4 4.1|4128745|30|NZ_CP017640|PILER-CR 4128745-4128774 30 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 126416-126445 9 0.7

1. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
ggagcgcctgacaaaggccggcgtgcaggt	Protospacer
**. *******  ***************  

2. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 6, identity: 0.8

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
cggcgtgctgagcaaggcgggcgtgcagcc	Protospacer
 ***   *********** ********** 

3. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP015747 (Shinella sp. HZN7 plasmid pShin-11, complete sequence) position: , mismatch: 7, identity: 0.767

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
tgaccggctgagcaaggccggcgtgttcga	Protospacer
 *.*** ******************.   *

4. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
gcagcgcctgcgcaaggccggcgcgcaagt	Protospacer
* . ****** ************.***.  

5. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP017148 (Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
cgaccgcctgcgcaaggccggcctgctcgg	Protospacer
 *.******* *********** ***   .

6. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP040824 (Paraoceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
cacccggctgcgcaaggccggcgtgctcaa	Protospacer
 . *** *** ***************   *

7. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
cgaccggctgatcaaggccggcgtgccctg	Protospacer
 *.*** **** **************  ..

8. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
ctacgggctgagcgaggccggcgtgcaggg	Protospacer
  .* * ******.************** .

9. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
cgaccggctgatcaaggccggcgtgccctg	Protospacer
 *.*** **** **************  ..

10. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
ctacgggctgagcgaggccggcgtgcaggg	Protospacer
  .* * ******.************** .

11. spacer 4.1|4128745|30|NZ_CP017640|PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.7

gggccgcctgagcaaggccggcgtgcagca	CRISPR spacer
tggccgcgtgagcaagaccggcgtttgcgc	Protospacer
 ****** ********.******* ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1400422 : 1458163 60 Burkholderia_virus(21.43%) protease,tRNA,transposase,portal,capsid,head,tail,terminase NA
DBSCAN-SWA_2 5674516 : 5696280 21 Geobacillus_phage(33.33%) head,protease,transposase,portal NA
DBSCAN-SWA_3 5822020 : 5841760 20 Paenibacillus_phage(33.33%) protease,transposase,head,tail NA
DBSCAN-SWA_4 6054801 : 6065179 16 Paracoccus_phage(20.0%) integrase attL 6063864:6063881|attR 6075827:6075844
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage