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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017783 Rhodobacter sp. LPB0142 plasmid pEJ02, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP017781 Rhodobacter sp. LPB0142, complete genome 3 crisprs DEDDh,WYL,csa3,PD-DExK 0 1 7 0
NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 0 crisprs DEDDh 0 0 4 0
NZ_CP017784 Rhodobacter sp. LPB0142 plasmid pEJ03, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP017783
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2040 2 Rhodobacter_phage(100.0%) NA NA
DBSCAN-SWA_2 6911 : 16386 7 Escherichia_phage(40.0%) transposase NA
DBSCAN-SWA_3 19491 : 20706 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_4 24673 : 28956 5 Streptococcus_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP017781
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017781_1 834064-834202 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017781_2 1444127-1444232 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017781_3 2295724-2295785 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017781_2 2.1|1444150|23|NZ_CP017781|CRISPRCasFinder 1444150-1444172 23 NC_009427 Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence 207913-207935 3 0.87

1. spacer 2.1|1444150|23|NZ_CP017781|CRISPRCasFinder matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 3, identity: 0.87

tttcggcattttccggacacggg	CRISPR spacer
tttcggcattttccggacaccat	Protospacer
******************** . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1405321 : 1447991 42 Acidithiobacillus_phage(25.0%) tail,capsid,head,portal,integrase,terminase attL 1400376:1400425|attR 1451996:1452045
DBSCAN-SWA_2 1608366 : 1620726 14 Paracoccus_phage(37.5%) capsid,tail,head,portal,protease NA
DBSCAN-SWA_3 1626792 : 1635748 9 uncultured_Mediterranean_phage(33.33%) tRNA NA
DBSCAN-SWA_4 1732671 : 1742033 10 Acidithiobacillus_phage(57.14%) NA NA
DBSCAN-SWA_5 3255011 : 3312045 55 Acidithiobacillus_phage(25.0%) transposase,integrase,portal,terminase attL 3247672:3247688|attR 3270870:3270886
DBSCAN-SWA_6 3317922 : 3372428 43 Lactococcus_phage(25.0%) transposase,integrase,protease attL 3314117:3314132|attR 3339277:3339292
DBSCAN-SWA_7 3376084 : 3415268 44 Acidithiobacillus_phage(26.92%) tail,portal,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP017782
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 17703 : 60370 45 Acidithiobacillus_phage(18.18%) integrase,transposase attL 26380:26439|attR 57048:59553
DBSCAN-SWA_2 85716 : 134407 35 Escherichia_phage(27.27%) integrase,transposase attL 85607:85666|attR 138098:140632
DBSCAN-SWA_3 149521 : 158001 6 Ochrobactrum_phage(50.0%) NA NA
DBSCAN-SWA_4 187197 : 238290 42 Escherichia_phage(22.22%) integrase,transposase attL 186271:186330|attR 235867:238400
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage