CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP017876	Campylobacter coli strain ZV1224 plasmid pCCDM224S, complete sequence	1 crisprs	cas14j,c2c9_V-U4	0	1	0
NZ_CP017877	Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence	1 crisprs	NA	0	2	0
NZ_CP017875	Campylobacter coli strain ZV1224 chromosome, complete genome	2 crisprs	csa3,cas9,cas1,cas2,cas14j,DEDDh	2	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017875_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017875_1

398951-399514

TypeII

Consensus_repeat	Method
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	PILER-CR
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	CRISPRCasFinder
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	CRT

8 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP017875_1

>merge|NZ_CP017875|1|398951-399514|PILER-CR,CRISPRCasFinder,CRT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACTATGCTTATTTTAGTGACATCATAATCATAATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACAAAACCGATTGCGTTATAAAATGGGGTGATATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACGTCTTGTAGGCATAGAGCAAGAACTTGCAAATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACTACAACTACTTTACCATATTGCGAGAAAGTATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACAACTTGATTATCGTTATACTCTAAAGGCTCATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACGTAAGCGTAATTCCACAGCCAAACCAAGAAATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACTATTTCCATAATTATCTACTATAGCACTTGATTTTACCATAAAGAAATTTAAAAAGGGACTAAAACATATTGTTTAGCTTCAACCTCATCTTCATCATTTTACCATAAAGAAATTTAAAAAGGGACTAACCC

>NZ_CP017875|1|1|398951-399448|PILER-CR
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TATGCTTATTTTAGTGACATCATAATCATA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AAAACCGATTGCGTTATAAAATGGGGTGAT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	GTCTTGTAGGCATAGAGCAAGAACTTGCAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TACAACTACTTTACCATATTGCGAGAAAGT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AACTTGATTATCGTTATACTCTAAAGGCTC
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	GTAAGCGTAATTCCACAGCCAAACCAAGAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TATTTCCATAATTATCTACTATAGCACTTG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC

>NZ_CP017875|1|1|398951-399514|CRISPRCasFinder
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TATGCTTATTTTAGTGACATCATAATCATA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AAAACCGATTGCGTTATAAAATGGGGTGAT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	GTCTTGTAGGCATAGAGCAAGAACTTGCAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TACAACTACTTTACCATATTGCGAGAAAGT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AACTTGATTATCGTTATACTCTAAAGGCTC
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	GTAAGCGTAATTCCACAGCCAAACCAAGAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TATTTCCATAATTATCTACTATAGCACTTG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	ATATTGTTTAGCTTCAACCTCATCTTCATC
ATTTTACCATAAAGAAATTTAAAAAGGGACTAACCC

>NZ_CP017875|1|1|398951-399514|CRT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TATGCTTATTTTAGTGACATCATAATCATA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AAAACCGATTGCGTTATAAAATGGGGTGAT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	GTCTTGTAGGCATAGAGCAAGAACTTGCAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TACAACTACTTTACCATATTGCGAGAAAGT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	AACTTGATTATCGTTATACTCTAAAGGCTC
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	GTAAGCGTAATTCCACAGCCAAACCAAGAA
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	TATTTCCATAATTATCTACTATAGCACTTG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	ATATTGTTTAGCTTCAACCTCATCTTCATC
ATTTTACCATAAAGAAATTTAAAAAGGGACTAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017875.1\|WP_002816884.1\|404636_405338_+\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|376858
NZ_CP017875.1\|WP_002781207.1\|406100_408314_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153
NZ_CP017875.1\|WP_002780989.1\|397490_398381_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP017875.1\|WP_002785830.1\|388707_389745_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP017875.1\|WP_002779352.1\|408317_408959_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP017875.1\|WP_002784096.1\|405509_406052_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153
NZ_CP017875.1\|WP_071315089.1\|392878_394333_-\|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611
NZ_CP017875.1\|WP_002781229.1\|400821_401268_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP017875.1\|WP_061425937.1\|399627_400818_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP017875.1\|WP_002797817.1\|398373_398805_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP017875.1\|WP_002785841.1\|405312_405510_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP017875.1\|WP_002785825.1\|387337_387787_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP017875.1\|WP_002785839.1\|403156_404305_+\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP017875.1\|WP_002819067.1\|394539_397494_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP017875.1\|WP_002780999.1\|389751_390483_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP017875.1\|WP_070242180.1\|390457_391207_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP017875.1\|WP_071315088.1\|391869_392859_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP017875.1\|WP_002781225.1\|401268_401490_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP017875.1\|WP_002846144.1\|401491_403033_-\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP017875.1\|WP_071315087.1\|391203_391809_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620

Protein	Function_ID	Function_description	E-value
NZ_CP017875.1\|WP_002816884.1\|404636_405338_+\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	7.45589e-06
NZ_CP017875.1\|WP_002781207.1\|406100_408314_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	1.59149e-157
NZ_CP017875.1\|WP_002780989.1\|397490_398381_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.70973e-121
NZ_CP017875.1\|WP_002785830.1\|388707_389745_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.38567e-26
NZ_CP017875.1\|WP_002779352.1\|408317_408959_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	1.40634e-57
NZ_CP017875.1\|WP_002784096.1\|405509_406052_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.35702e-61
NZ_CP017875.1\|WP_071315089.1\|392878_394333_-\|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	1.16691e-70
NZ_CP017875.1\|WP_002781229.1\|400821_401268_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP017875.1\|WP_061425937.1\|399627_400818_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.35306e-143
NZ_CP017875.1\|WP_002797817.1\|398373_398805_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP017875.1\|WP_002785841.1\|405312_405510_+\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00678663
NZ_CP017875.1\|WP_002785825.1\|387337_387787_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	8.2665e-48
NZ_CP017875.1\|WP_002785839.1\|403156_404305_+\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP017875.1\|WP_002819067.1\|394539_397494_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP017875.1\|WP_002780999.1\|389751_390483_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	9.50211e-83
NZ_CP017875.1\|WP_070242180.1\|390457_391207_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.1075e-87
NZ_CP017875.1\|WP_071315088.1\|391869_392859_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP017875.1\|WP_002781225.1\|401268_401490_-\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.55016e-11
NZ_CP017875.1\|WP_002846144.1\|401491_403033_-\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.44012e-120
NZ_CP017875.1\|WP_071315087.1\|391203_391809_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.27248e-69

>NZ_CP017875.1|WP_002797817.1|398373_398805_+|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP017875.1|WP_002780989.1|397490_398381_+|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALISNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP017875.1|WP_002819067.1|394539_397494_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKGKILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCITQSFLKYELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFSDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP017875.1|WP_071315089.1|392878_394333_-|anaerobic-C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFIVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVMVIAILIPFYFAWVDKRDKEKGVLNDEVEIPPIIDPKCPTFYILFPWLPVVFLFIAYFFTIKLDVVTANFLSISLVFLVEFARHKNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGINILANAVSDLGTGNFAWFGILLSITVLSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITFVLPIEIASCLGRAASPIAGGIIALAGFVKVDPMDIIKRTTPLLLIAMIINIAVAFYLAQTNPLPKEQNSTKIELNRVK
>NZ_CP017875.1|WP_071315088.1|391869_392859_+|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDKVVGGIGSFAGAFRMPSGFKNPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKSVVAGIAEGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVFFEGLKLKFDDKIEGKNLIDVLLEPTRIYVRDFLTLKPYINALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEITINEGVVLE
>NZ_CP017875.1|WP_071315087.1|391203_391809_-|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADSIAHEILDKYALELAQIFSKFHKKNLLKAEGKIDRKILGEIVFQNKEAKTILENFTHPKIRAQILEQMQILEQENKPFFVEIPLFFESGAYDGLGKVILIYAPKELSLKRIIQRDNLSLEAAKARLDSQMNIEEKLKKADFIIKNTGSYVDFRQECVKVIQEISKGKM
>NZ_CP017875.1|WP_070242180.1|390457_391207_-|diaminopimelate-epimerase
MKFYKYCASGNDFVIMNASEKKDRSALAKELCNRYEGIGADGFVVILPHKKYDFEWEFYNNDGSTASMCGNGSRAAAHFAHHINGIKPRMAFLTGVGVIKANVDNNSVEVSLGKIKNIQDAFNECEKSWQLCDTGVPHLVHFCENLDEFDLKLCKQMREKYNANVNFVKVENDNTLKVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARIIPKSGEELSFKFENEELFFKGKVRYCFEANYNFS
>NZ_CP017875.1|WP_002780999.1|389751_390483_-|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKRIIIFLSFYLLPLFGNSELKNGFGEEYYKLNVEQKRQIFFVKMNAMFDKSFEEIAKERAFVEAFFYDAYKNGLRNSNQNNLEKLINLKNKYRVENLYDFTEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIRIFDSLQDSVDSYVLNLNRHFAYEEFRNERAKFESEGKEITGLEAIKTLDSYSERKGYYINIVTKIIQRYDLERYDTPKSF
>NZ_CP017875.1|WP_002785830.1|388707_389745_+|ATP-binding-protein
MKVLNFFYENHPKFEISYERKVQIPLCNIIIKGPKFSGKKTLIFNYLSQFKPNEILFLNLYDTRFENQSLGHLSNFLEKNVQIKFLCIYNVEFALNLQDIKIPIIISTDKKDLHIEGFQELELDYFDFEEFVSISRKNLPINNLVGLFLQSGRSKLGEKNILLRQNFNTLELEILKYLALNLGQQISISKLFLELKKKLKTSKDSVYHTIKELENTYIIHPISHDEKKLQKIYFRDFGLRNNLCIQKDFAHLFENLILNELFKFKQEFFYNKFFTFYSKVSKIAYISSPTLDIDLIKLRAKKILSKGLELGIFHVVFITLSSEDSFFEQGVKFEVLPFDKFSLGF
>NZ_CP017875.1|WP_002785825.1|387337_387787_+|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFYSIHEHTEKAYEEMAELFDDCAERALQLGEKAITCQKTLMENAKSPKVEKDCFTPVEVMELIKKDYEYLLAEFKKLNEEAEKASDTTTAAFAQENIAKYEKSLWMLSSALQNTCKM
>NZ_CP017875.1|WP_061425937.1|399627_400818_-|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP017875.1|WP_002781229.1|400821_401268_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP017875.1|WP_002781225.1|401268_401490_-|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAISLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP017875.1|WP_002846144.1|401491_403033_-|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSEDELKTALASMFLINGKSYNLKRVDLNSKIGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP017875.1|WP_002785839.1|403156_404305_+|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEMSEIAHLSHHIVFNSLYQFDKFKSLCANNSLGLRCNLEFSFAPKELYNPCGKYSRLGILSKDLENFDLSGVEGLHFHALCEESADALEAVLKVFEEKFGKWIKQMKWVNFGGGHHITKQGYDIRKIITLCKNFSDKYGVQVYLEPGEAVGWQSGVLVASVVDIVENEKRIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFKEELKRGDRVVFLDQIHYSIVKNTTFNGIRLPNLMLLNSKNELEMVREFSYKDYALRN
>NZ_CP017875.1|WP_002816884.1|404636_405338_+|molecular-chaperone-TorD-family-protein
MDLEKLRLARSLYYQCLGELFVFSFSENRLCNLKAYLEAMQEGLFDESLRTSFEILLRNLQDAQDLQAFYKEYDELFLALKNTIPMTFSYIEEGFENSKALLNVRQILAKSTIRRNEKIFKEAEDSVGFCFVLMSEFLKNKEDELAKALFEKVINQSIDEFLMLIFSNSKAKLYKEIANIVAQFIEFERYCFELEKPTIKPSKKVQNDLSRSEFLRREANKQRRSREKSQGIS
>NZ_CP017875.1|WP_002785841.1|405312_405510_+|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAIALGTASLLGGASVAFGQDQDEERKDLVRGKSKKKEVLYQRSANWEKYYIRAE
>NZ_CP017875.1|WP_002784096.1|405509_406052_+|molybdopterin-dependent-oxidoreductase
MSSMNETIKLNRRSFLKMAALSSLASPLLARSETLREANADELKEAYEGSQKIKSVCTACSVGCGIIAEVQNGVWLRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>NZ_CP017875.1|WP_002781207.1|406100_408314_+|molybdopterin-dependent-oxidoreductase
MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLIQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDKVDNAGTSLKALVVMGNGITSTAQQAKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVIDPLYESKEDQEILFELAKKLGFYEDFTKTLRDENGKIVWPENATREIASAVRSIGLNGWSPERLKKHTLNWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGENLLAKNAPINSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGAIWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDQIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQKAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELASEQKIKAGDMIWVHSPEGTKIHVRVKFNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGV
>NZ_CP017875.1|WP_002779352.1|408317_408959_+|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCSVACDEAHELPINIRRRRVITLNEGVQGKEVSTSISCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPESTNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHSRLQSRGYGIANPSQSIEWKIAYIGKERL

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Crispr_ID: NZ_CP017875_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017875_2

1763477-1764040

TypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAC	PILER-CR

8 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP017875_2

>merge|NZ_CP017875|2|1763477-1764040|CRISPRCasFinder,CRT,PILER-CR
GGGTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGATGAAGATGAGGTTGAAGCTAAACAATATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCAAGTGCTATAGTAGATAATTATGGAAATAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTCTTGGTTTGGCTGTGGAATTACGCTTACGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGAGCCTTTAGAGTATAACGATAATCAAGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATACTTTCTCGCAATATGGTAAAGTAGTTGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTGCAAGTTCTTGCTCTATGCCTACAAGACGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATCACCCCATTTTATAACGCAATCGGTTTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGATTATGATGTCACTAAAATAAGCATAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP017875|2|2|1763477-1764040|CRISPRCasFinder
GGGTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GATGAAGATGAGGTTGAAGCTAAACAATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAGTGCTATAGTAGATAATTATGGAAATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTCTTGGTTTGGCTGTGGAATTACGCTTAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAGCCTTTAGAGTATAACGATAATCAAGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ACTTTCTCGCAATATGGTAAAGTAGTTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTGCAAGTTCTTGCTCTATGCCTACAAGAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATCACCCCATTTTATAACGCAATCGGTTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGATTATGATGTCACTAAAATAAGCATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP017875|2|2|1763477-1764040|CRT
GGGTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GATGAAGATGAGGTTGAAGCTAAACAATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAGTGCTATAGTAGATAATTATGGAAATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTCTTGGTTTGGCTGTGGAATTACGCTTAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAGCCTTTAGAGTATAACGATAATCAAGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ACTTTCTCGCAATATGGTAAAGTAGTTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTGCAAGTTCTTGCTCTATGCCTACAAGAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATCACCCCATTTTATAACGCAATCGGTTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGATTATGATGTCACTAAAATAAGCATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP017875|2|2|1763543-1764040|PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAGTGCTATAGTAGATAATTATGGAAATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTCTTGGTTTGGCTGTGGAATTACGCTTAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAGCCTTTAGAGTATAACGATAATCAAGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ACTTTCTCGCAATATGGTAAAGTAGTTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTGCAAGTTCTTGCTCTATGCCTACAAGAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATCACCCCATTTTATAACGCAATCGGTTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGATTATGATGTCACTAAAATAAGCATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017875.1\|WP_002785830.1\|1773245_1774283_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP017875.1\|WP_002780989.1\|1764609_1765500_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP017875.1\|WP_002781229.1\|1761722_1762169_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP017875.1\|WP_061425937.1\|1762172_1763363_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP017875.1\|WP_002785839.1\|1758685_1759834_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP017875.1\|WP_002785825.1\|1775203_1775653_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP017875.1\|WP_071315089.1\|1768657_1770112_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611
NZ_CP017875.1\|WP_002780999.1\|1772507_1773239_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP017875.1\|WP_002819067.1\|1765496_1768451_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP017875.1\|WP_070242180.1\|1771783_1772533_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP017875.1\|WP_002846144.1\|1759957_1761499_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP017875.1\|WP_002816884.1\|1757652_1758354_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|376858
NZ_CP017875.1\|WP_071315087.1\|1771181_1771787_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP017875.1\|WP_002797817.1\|1764185_1764617_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP017875.1\|WP_071315088.1\|1770131_1771121_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP017875.1\|WP_002785843.1\|1753102_1754035_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP017875.1\|WP_002781225.1\|1761500_1761722_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP017875.1\|WP_002779352.1\|1754031_1754673_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP017875.1\|WP_002785841.1\|1757480_1757678_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP017875.1\|WP_079741863.1\|1754676_1757481_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153

Protein	Function_ID	Function_description	E-value
NZ_CP017875.1\|WP_002785830.1\|1773245_1774283_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.38567e-26
NZ_CP017875.1\|WP_002780989.1\|1764609_1765500_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.70973e-121
NZ_CP017875.1\|WP_002781229.1\|1761722_1762169_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP017875.1\|WP_061425937.1\|1762172_1763363_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.35306e-143
NZ_CP017875.1\|WP_002785839.1\|1758685_1759834_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP017875.1\|WP_002785825.1\|1775203_1775653_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	8.2665e-48
NZ_CP017875.1\|WP_071315089.1\|1768657_1770112_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	1.16691e-70
NZ_CP017875.1\|WP_002780999.1\|1772507_1773239_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	9.50211e-83
NZ_CP017875.1\|WP_002819067.1\|1765496_1768451_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP017875.1\|WP_070242180.1\|1771783_1772533_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.1075e-87
NZ_CP017875.1\|WP_002846144.1\|1759957_1761499_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.44012e-120
NZ_CP017875.1\|WP_002816884.1\|1757652_1758354_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	7.45589e-06
NZ_CP017875.1\|WP_071315087.1\|1771181_1771787_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.27248e-69
NZ_CP017875.1\|WP_002797817.1\|1764185_1764617_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP017875.1\|WP_071315088.1\|1770131_1771121_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP017875.1\|WP_002785843.1\|1753102_1754035_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	2.3395e-85
NZ_CP017875.1\|WP_002781225.1\|1761500_1761722_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.55016e-11
NZ_CP017875.1\|WP_002779352.1\|1754031_1754673_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	1.40634e-57
NZ_CP017875.1\|WP_002785841.1\|1757480_1757678_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00678663
NZ_CP017875.1\|WP_079741863.1\|1754676_1757481_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0

>NZ_CP017875.1|WP_061425937.1|1762172_1763363_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP017875.1|WP_002781229.1|1761722_1762169_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP017875.1|WP_002781225.1|1761500_1761722_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAISLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP017875.1|WP_002846144.1|1759957_1761499_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSEDELKTALASMFLINGKSYNLKRVDLNSKIGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP017875.1|WP_002785839.1|1758685_1759834_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEMSEIAHLSHHIVFNSLYQFDKFKSLCANNSLGLRCNLEFSFAPKELYNPCGKYSRLGILSKDLENFDLSGVEGLHFHALCEESADALEAVLKVFEEKFGKWIKQMKWVNFGGGHHITKQGYDIRKIITLCKNFSDKYGVQVYLEPGEAVGWQSGVLVASVVDIVENEKRIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFKEELKRGDRVVFLDQIHYSIVKNTTFNGIRLPNLMLLNSKNELEMVREFSYKDYALRN
>NZ_CP017875.1|WP_002816884.1|1757652_1758354_-|molecular-chaperone-TorD-family-protein
MDLEKLRLARSLYYQCLGELFVFSFSENRLCNLKAYLEAMQEGLFDESLRTSFEILLRNLQDAQDLQAFYKEYDELFLALKNTIPMTFSYIEEGFENSKALLNVRQILAKSTIRRNEKIFKEAEDSVGFCFVLMSEFLKNKEDELAKALFEKVINQSIDEFLMLIFSNSKAKLYKEIANIVAQFIEFERYCFELEKPTIKPSKKVQNDLSRSEFLRREANKQRRSREKSQGIS
>NZ_CP017875.1|WP_002785841.1|1757480_1757678_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAIALGTASLLGGASVAFGQDQDEERKDLVRGKSKKKEVLYQRSANWEKYYIRAE
>NZ_CP017875.1|WP_079741863.1|1754676_1757481_-|molybdopterin-dependent-oxidoreductase
MSSMNETIKLNRRSFLKMAALSSLASPLLARSETLREANADELKEAYEGSQKIKSVCTACSVGCGIIAEVQNGVWLRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLIQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDKVDNAGTSLKALVVMGNGITSTAQQAKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVIDPLYESKEDQEILFELAKKLGFYEDFTKTLRDENGKIVWPENATREIASAVRSIGLNGWSPERLKKHTLNWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGENLLAKNAPINSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGAIWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDQIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQKAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELASEQKIKAGDMIWVHSPEGTKIHVRVKFNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGV
>NZ_CP017875.1|WP_002779352.1|1754031_1754673_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCSVACDEAHELPINIRRRRVITLNEGVQGKEVSTSISCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPESTNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHSRLQSRGYGIANPSQSIEWKIAYIGKERL
>NZ_CP017875.1|WP_002785843.1|1753102_1754035_-|formate-dehydrogenase-subunit-gamma
MKKILITLLSTFVSLFAYGSERMGQDTQIWDFHRIINIPNYDTFGKLWTTLQGEYIATIALIAMIAVFSAFALHYMVIGPKQFSHAGKKIYAFSLFERIFHFIAAISWVILVPTGFVMMFGATFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRLSAIIHNFLGIICAVFFGIHIYMAVFAIKGSIHSMVSGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP017875.1|WP_002797817.1|1764185_1764617_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP017875.1|WP_002780989.1|1764609_1765500_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALISNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP017875.1|WP_002819067.1|1765496_1768451_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKGKILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCITQSFLKYELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFSDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP017875.1|WP_071315089.1|1768657_1770112_+|anaerobic-C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFIVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVMVIAILIPFYFAWVDKRDKEKGVLNDEVEIPPIIDPKCPTFYILFPWLPVVFLFIAYFFTIKLDVVTANFLSISLVFLVEFARHKNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGINILANAVSDLGTGNFAWFGILLSITVLSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITFVLPIEIASCLGRAASPIAGGIIALAGFVKVDPMDIIKRTTPLLLIAMIINIAVAFYLAQTNPLPKEQNSTKIELNRVK
>NZ_CP017875.1|WP_071315088.1|1770131_1771121_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDKVVGGIGSFAGAFRMPSGFKNPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKSVVAGIAEGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVFFEGLKLKFDDKIEGKNLIDVLLEPTRIYVRDFLTLKPYINALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEITINEGVVLE
>NZ_CP017875.1|WP_071315087.1|1771181_1771787_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADSIAHEILDKYALELAQIFSKFHKKNLLKAEGKIDRKILGEIVFQNKEAKTILENFTHPKIRAQILEQMQILEQENKPFFVEIPLFFESGAYDGLGKVILIYAPKELSLKRIIQRDNLSLEAAKARLDSQMNIEEKLKKADFIIKNTGSYVDFRQECVKVIQEISKGKM
>NZ_CP017875.1|WP_070242180.1|1771783_1772533_+|diaminopimelate-epimerase
MKFYKYCASGNDFVIMNASEKKDRSALAKELCNRYEGIGADGFVVILPHKKYDFEWEFYNNDGSTASMCGNGSRAAAHFAHHINGIKPRMAFLTGVGVIKANVDNNSVEVSLGKIKNIQDAFNECEKSWQLCDTGVPHLVHFCENLDEFDLKLCKQMREKYNANVNFVKVENDNTLKVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARIIPKSGEELSFKFENEELFFKGKVRYCFEANYNFS
>NZ_CP017875.1|WP_002780999.1|1772507_1773239_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKRIIIFLSFYLLPLFGNSELKNGFGEEYYKLNVEQKRQIFFVKMNAMFDKSFEEIAKERAFVEAFFYDAYKNGLRNSNQNNLEKLINLKNKYRVENLYDFTEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIRIFDSLQDSVDSYVLNLNRHFAYEEFRNERAKFESEGKEITGLEAIKTLDSYSERKGYYINIVTKIIQRYDLERYDTPKSF
>NZ_CP017875.1|WP_002785830.1|1773245_1774283_-|ATP-binding-protein
MKVLNFFYENHPKFEISYERKVQIPLCNIIIKGPKFSGKKTLIFNYLSQFKPNEILFLNLYDTRFENQSLGHLSNFLEKNVQIKFLCIYNVEFALNLQDIKIPIIISTDKKDLHIEGFQELELDYFDFEEFVSISRKNLPINNLVGLFLQSGRSKLGEKNILLRQNFNTLELEILKYLALNLGQQISISKLFLELKKKLKTSKDSVYHTIKELENTYIIHPISHDEKKLQKIYFRDFGLRNNLCIQKDFAHLFENLILNELFKFKQEFFYNKFFTFYSKVSKIAYISSPTLDIDLIKLRAKKILSKGLELGIFHVVFITLSSEDSFFEQGVKFEVLPFDKFSLGF
>NZ_CP017875.1|WP_002785825.1|1775203_1775653_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFYSIHEHTEKAYEEMAELFDDCAERALQLGEKAITCQKTLMENAKSPKVEKDCFTPVEVMELIKKDYEYLLAEFKKLNEEAEKASDTTTAAFAQENIAKYEKSLWMLSSALQNTCKM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017875_1	1.3\|399119\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399119-399148	30	NZ_CP017875.1	59334-59363	0	1.0
NZ_CP017875_2	2.6\|1763843\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763843-1763872	30	NZ_CP017875.1	59334-59363	0	1.0

1. spacer 1.3|399119|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to position: 59334-59363, mismatch: 0, identity: 1.0

gtcttgtaggcatagagcaagaacttgcaa	CRISPR spacer
gtcttgtaggcatagagcaagaacttgcaa	Protospacer
******************************

2. spacer 2.6|1763843|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to position: 59334-59363, mismatch: 0, identity: 1.0

ttgcaagttcttgctctatgcctacaagac	CRISPR spacer
ttgcaagttcttgctctatgcctacaagac	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017875_1	1.2\|399053\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399053-399082	30	MN530981	Campylobacter phage DA10, complete genome	11022-11051	0	1.0
NZ_CP017875_2	2.7\|1763909\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763909-1763938	30	MN530981	Campylobacter phage DA10, complete genome	11022-11051	0	1.0
NZ_CP017875_1	1.5\|399251\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399251-399280	30	MN530981	Campylobacter phage DA10, complete genome	19421-19450	1	0.967
NZ_CP017875_1	1.6\|399317\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399317-399346	30	MN530981	Campylobacter phage DA10, complete genome	16583-16612	1	0.967
NZ_CP017875_2	2.3\|1763645\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763645-1763674	30	MN530981	Campylobacter phage DA10, complete genome	16583-16612	1	0.967
NZ_CP017875_2	2.4\|1763711\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763711-1763740	30	MN530981	Campylobacter phage DA10, complete genome	19421-19450	1	0.967
NZ_CP017875_1	1.8\|399449\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	399449-399478	30	MN530981	Campylobacter phage DA10, complete genome	14720-14749	2	0.933
NZ_CP017875_2	2.1\|1763513\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	1763513-1763542	30	MN530981	Campylobacter phage DA10, complete genome	14720-14749	2	0.933
NZ_CP017875_1	1.7\|399383\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399383-399412	30	NZ_CP009218	Rickettsiales bacterium Ac37b plasmid 1, complete sequence	40052-40081	5	0.833
NZ_CP017875_2	2.2\|1763579\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763579-1763608	30	NZ_CP009218	Rickettsiales bacterium Ac37b plasmid 1, complete sequence	40052-40081	5	0.833
NZ_CP017875_1	1.2\|399053\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399053-399082	30	MK962753	Shigella phage JK32, complete genome	124838-124867	6	0.8
NZ_CP017875_1	1.5\|399251\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399251-399280	30	NZ_AP017310	Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome	85539-85568	6	0.8
NZ_CP017875_2	2.4\|1763711\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763711-1763740	30	NZ_AP017310	Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome	85539-85568	6	0.8
NZ_CP017875_2	2.7\|1763909\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763909-1763938	30	MK962753	Shigella phage JK32, complete genome	124838-124867	6	0.8
NZ_CP017875_1	1.7\|399383\|30\|NZ_CP017875\|PILER-CR,CRISPRCasFinder,CRT	399383-399412	30	MN694714	Marine virus AFVG_250M691, complete genome	11387-11416	7	0.767
NZ_CP017875_1	1.8\|399449\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	399449-399478	30	MG592553	Vibrio phage 1.187.O._10N.286.49.F1, partial genome	108727-108756	7	0.767
NZ_CP017875_2	2.1\|1763513\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	1763513-1763542	30	MG592553	Vibrio phage 1.187.O._10N.286.49.F1, partial genome	108727-108756	7	0.767
NZ_CP017875_2	2.2\|1763579\|30\|NZ_CP017875\|CRISPRCasFinder,CRT,PILER-CR	1763579-1763608	30	MN694714	Marine virus AFVG_250M691, complete genome	11387-11416	7	0.767
NZ_CP017875_1	1.8\|399449\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	399449-399478	30	MN694639	Marine virus AFVG_250M766, complete genome	27889-27918	8	0.733
NZ_CP017875_1	1.8\|399449\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	399449-399478	30	MN694801	Marine virus AFVG_250M760, complete genome	9982-10011	8	0.733
NZ_CP017875_2	2.1\|1763513\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	1763513-1763542	30	MN694639	Marine virus AFVG_250M766, complete genome	27889-27918	8	0.733
NZ_CP017875_2	2.1\|1763513\|30\|NZ_CP017875\|CRISPRCasFinder,CRT	1763513-1763542	30	MN694801	Marine virus AFVG_250M760, complete genome	9982-10011	8	0.733

1. spacer 1.2|399053|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

aaaaccgattgcgttataaaatggggtgat	CRISPR spacer
aaaaccgattgcgttataaaatggggtgat	Protospacer
******************************

2. spacer 2.7|1763909|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atcaccccattttataacgcaatcggtttt	CRISPR spacer
atcaccccattttataacgcaatcggtttt	Protospacer
******************************

3. spacer 1.5|399251|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

aacttgattatcgttatactctaaaggctc	CRISPR spacer
aacttgattatcgttatactctaaaggttc	Protospacer
***************************.**

4. spacer 1.6|399317|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gtaagcgtaattccacagccaaaccaagaa	CRISPR spacer
gtaagtgtaattccacagccaaaccaagaa	Protospacer
*****.************************

5. spacer 2.3|1763645|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

ttcttggtttggctgtggaattacgcttac	CRISPR spacer
ttcttggtttggctgtggaattacacttac	Protospacer
************************.*****

6. spacer 2.4|1763711|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gagcctttagagtataacgataatcaagtt	CRISPR spacer
gaacctttagagtataacgataatcaagtt	Protospacer
**.***************************

7. spacer 1.8|399449|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

atattgtttagcttcaacctcatcttcatc	CRISPR spacer
atcttgtttagcttcaacctcatattcatc	Protospacer
** ******************** ******

8. spacer 2.1|1763513|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

gatgaagatgaggttgaagctaaacaatat	CRISPR spacer
gatgaatatgaggttgaagctaaacaagat	Protospacer
****** ******************** **

9. spacer 1.7|399383|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009218 (Rickettsiales bacterium Ac37b plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

tatttccataattatctactatag-cacttg	CRISPR spacer
tatttccattattatctaatataattactt-	Protospacer
********* ******** ****. .****

10. spacer 2.2|1763579|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009218 (Rickettsiales bacterium Ac37b plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

caagt-gctatagtagataattatggaaata	CRISPR spacer
-aagtaattatattagataataatggaaata	Protospacer
 **** ..**** ******** *********

11. spacer 1.2|399053|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 6, identity: 0.8

aaaaccgattgcgttataaaatggggtgat	CRISPR spacer
aaaaccgattgagttatgaaatggacagaa	Protospacer
*********** *****.******.  **

12. spacer 1.5|399251|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017310 (Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome) position: , mismatch: 6, identity: 0.8

aacttgattatcgttatactctaaaggctc	CRISPR spacer
agtttgattgtcgtaatactctaaaggggc	Protospacer
*..******.**** ************  *

13. spacer 2.4|1763711|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017310 (Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome) position: , mismatch: 6, identity: 0.8

gagcctttagagtataacgataatcaagtt	CRISPR spacer
gcccctttagagtattacgacaatcaaact	Protospacer
*  ************ ****.******..*

14. spacer 2.7|1763909|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 6, identity: 0.8

atcaccccattttataacgcaatcggtttt	CRISPR spacer
ttctgtccatttcataactcaatcggtttt	Protospacer
 **  .******.***** ***********

15. spacer 1.7|399383|30|NZ_CP017875|PILER-CR,CRISPRCasFinder,CRT matches to MN694714 (Marine virus AFVG_250M691, complete genome) position: , mismatch: 7, identity: 0.767

tatttccataattatctactatagcacttg	CRISPR spacer
caaatgcaaaactatctactatagcactta	Protospacer
.*  * ** **.*****************.

16. spacer 1.8|399449|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MG592553 (Vibrio phage 1.187.O._10N.286.49.F1, partial genome) position: , mismatch: 7, identity: 0.767

-atattgtttagcttcaacctcatcttcatc	CRISPR spacer
agtaat-tttagtttcaacctcatcttctaa	Protospacer
 .** * *****.***************

17. spacer 2.1|1763513|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MG592553 (Vibrio phage 1.187.O._10N.286.49.F1, partial genome) position: , mismatch: 7, identity: 0.767

gatgaagatgaggttgaagctaaacaatat-	CRISPR spacer
ttagaagatgaggttgaaactaaa-attact	Protospacer
   ***************.***** * **.

18. spacer 2.2|1763579|30|NZ_CP017875|CRISPRCasFinder,CRT,PILER-CR matches to MN694714 (Marine virus AFVG_250M691, complete genome) position: , mismatch: 7, identity: 0.767

caagtgctatagtagataattatggaaata	CRISPR spacer
taagtgctatagtagatagttttgcatttg	Protospacer
.*****************.** ** *  *.

19. spacer 1.8|399449|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MN694639 (Marine virus AFVG_250M766, complete genome) position: , mismatch: 8, identity: 0.733

atattgtttagcttcaacctcatcttcatc	CRISPR spacer
tctcagttttgcttcaacctcatctgcata	Protospacer
 . . **** *************** ***

20. spacer 1.8|399449|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MN694801 (Marine virus AFVG_250M760, complete genome) position: , mismatch: 8, identity: 0.733

atattgtttagcttcaacctcatcttcatc	CRISPR spacer
tctcagttttgcttcaacctcatctgcata	Protospacer
 . . **** *************** ***

21. spacer 2.1|1763513|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MN694639 (Marine virus AFVG_250M766, complete genome) position: , mismatch: 8, identity: 0.733

gatgaagatgaggttgaagctaaacaatat	CRISPR spacer
tatgcagatgaggttgaagcaaaactgaga	Protospacer
 *** *************** **** . .

22. spacer 2.1|1763513|30|NZ_CP017875|CRISPRCasFinder,CRT matches to MN694801 (Marine virus AFVG_250M760, complete genome) position: , mismatch: 8, identity: 0.733

gatgaagatgaggttgaagctaaacaatat	CRISPR spacer
tatgcagatgaggttgaagcaaaactgaga	Protospacer
 *** *************** **** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

751875 : 761569

Catovirus(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002786305.1\|751875_753261_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A0K0KVL9	Prochlorococcus_phage	9.4e-23	43.1
WP_002799679.1\|753257_753818_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	5.3e-17	36.7
WP_071315117.1\|753793_754759_-	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA
WP_002799677.1\|754817_755654_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002782985.1\|755663_756542_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.9e-102	62.8
WP_071315118.1\|756545_757577_+	dTDP-glucose 4,6-dehydratase	H9NC62	Sphingomonas_phage	8.7e-74	46.2
WP_002820238.1\|757573_757975_+	WxcM-like domain-containing protein	NA	NA	NA	NA
WP_002806621.1\|757964_758408_+	N-acetyltransferase	NA	NA	NA	NA
WP_071315119.1\|758408_759413_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	8.9e-07	40.0
WP_002799669.1\|759405_760470_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-10	38.5
WP_002799667.1\|760474_761569_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	3.3e-39	33.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017877

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017877_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017877_1

46770-46976

Orphan

Consensus_repeat	Method
TAAATAAAAAATTGACATAAATAGAATAGTTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP017877_1

>merge|NZ_CP017877|1|46770-46976|PILER-CR
TCATCTAAAATATAAAATTGACATAAATAGAATAGTTTATTATATTTATGTCAGCAAAATCAGCATACAATCACCCATAAGTTATTAAAAAATTGACATAAATAGAATAGTTTTTGACATAAATAGAATAGTTTTTGACATTTTTTCGGAACACCCATATGGAAAAATAGGCTTTTAAAAAATAAATTGACATAAATAGAATAGTTA

>NZ_CP017877|1|1|46770-46976|PILER-CR
TCATCTAAAATATAAAATTGACATAAATAGAATAGTTT	ATTATATTTATGTCAGCAAAATCAGCATACAATCACCCATAAGTTA
TTAAAAAATTGACATAAATAGAATAGTTTTTGACATAA	ATAGAATAGTTTTTGACATTTTTTCGGAACACCCATATGGAAAAATAGGCTTTTAAAAAATA
AATTGACATAAATAGAATAGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017877.1\|WP_071315226.1\|39770_41969_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP017877.1\|WP_002801488.1\|52660_53212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017877.1\|WP_079865901.1\|47412_48126_-\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NZ_CP017877.1\|WP_002818418.1\|46367_46586_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP017877.1\|WP_071315229.1\|49570_50800_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP017877.1\|WP_002809050.1\|38903_39518_+\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP017877.1\|WP_002828964.1\|37782_38046_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP017877.1\|WP_002809200.1\|44375_46169_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP017877.1\|WP_002825532.1\|42967_44224_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NZ_CP017877.1\|WP_023890668.1\|38215_38539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017877.1\|WP_057040392.1\|50881_51541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017877.1\|WP_057040391.1\|51544_52156_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017877.1\|WP_052802429.1\|52186_52468_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378933
NZ_CP017877.1\|WP_071315228.1\|48098_48920_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NZ_CP017877.1\|WP_126241088.1\|41910_42975_+\|response-regulator	unknown	unknown	gnl\|CDD\|381122
NZ_CP017877.1\|WP_071315230.1\|53211_54600_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP017877.1\|WP_002779783.1\|46171_46375_-\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|224638
NZ_CP017877.1\|WP_002825527.1\|38529_38907_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP017877.1\|WP_038834145.1\|49199_49463_-\|EexN-family-lipoprotein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017877.1\|WP_071315226.1\|39770_41969_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.15986e-17
NZ_CP017877.1\|WP_079865901.1\|47412_48126_-\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	1.90789e-09
NZ_CP017877.1\|WP_002818418.1\|46367_46586_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.28325e-11
NZ_CP017877.1\|WP_002809050.1\|38903_39518_+\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP017877.1\|WP_002828964.1\|37782_38046_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.41658e-06
NZ_CP017877.1\|WP_002809200.1\|44375_46169_-\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP017877.1\|WP_002825532.1\|42967_44224_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	2.94955e-64
NZ_CP017877.1\|WP_071315229.1\|49570_50800_-\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	9.43761e-28
NZ_CP017877.1\|WP_052802429.1\|52186_52468_-\|hypothetical-protein	gnl\|CDD\|378933	pfam12725, DUF3810, Protein of unknown function (DUF3810). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 333 and 377 amino acids in length. There is a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterized family of peptidase enzymes.	0.00480652
NZ_CP017877.1\|WP_071315228.1\|48098_48920_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	2.24674e-06
NZ_CP017877.1\|WP_126241088.1\|41910_42975_+\|response-regulator	gnl\|CDD\|381122	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators. This subfamily is composed of stand-alone response regulators (RRs) containing the PFxFATG[G/Y] motif; RRs with such a motif are also called ''FAT GUY'' response regulators. Included in this subfamily are Sphingomonas melonis SdrG, Sinorhizobium meliloti Sma0114, and Erythrobacter litoralis EL_LovR. SdrG is involved in the control of the general stress response. Sma0114 is part of the Sma0113/Sma0114 two-component system (TCS) that is involved in catabolite repression and polyhydroxy butyrate synthesis. EL_LovR is involved in a light-regulated TCS. PFxFATG[G/Y] RRs are typically associated with histidine-tryptophan-glutamate (HWE) histidine kinases that constitute a subclass of the larger histidine kinase superfamily characterized by an altered ATP binding site, which lacks the F-box that is normally an integral component of the ATP lid. The PFxFATG[G/Y] motif is involved in conformational changes after phosphorylation that results in the activation of the RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.71028e-06
NZ_CP017877.1\|WP_071315230.1\|53211_54600_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	5.33755e-05
NZ_CP017877.1\|WP_002779783.1\|46171_46375_-\|addiction-module-toxin,-HicA-family	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	1.11545e-13
NZ_CP017877.1\|WP_002825527.1\|38529_38907_+\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	7.49183e-09

>NZ_CP017877.1|WP_002818418.1|46367_46586_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP017877.1|WP_002779783.1|46171_46375_-|addiction-module-toxin,-HicA-family
MPELPRLTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NZ_CP017877.1|WP_002809200.1|44375_46169_-|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP017877.1|WP_002825532.1|42967_44224_-|DNA-cytosine-methyltransferase
MVVLDLFSGAGGLSEGFFRANSTFVAHIESDKYACETLKTRTSYWKLKKNNNLNIYYDYLLKKITKEQLWELTNTSDSEEVICKEISEHNFDSLVSKIKNNLKKTLSKNIDVIIGGPPCQAYSIIGRARMKNSIENDHRNYLYKYYVKFLNIFKPKIFVFENVPGIKSAGNGKYFDDLKKSIEDIGYSIQIKELIASDFGVLQNRKRIIIVGFKIKKNKKYSYPIFEKIENKNYFVKDVLSDLPKINPGEKIEGLNKYTKKTNSYLKMANIRDANFNILTQHETRPHNDRDREIYKEAILAWNTKRERLCYKKLALTRPELISHKNTNSFTNRFNVIKENTNASHTILAHMAMDGHYYIHPDITQLRSLSIREAARLQSFPDDFYFEGPRTSIFRQIGNAVPPKMAEQIAKKIKELII
>NZ_CP017877.1|WP_126241088.1|41910_42975_+|response-regulator
MKGFILKYVLRILRMNKQVETIRILFVDDNQETLDSYEESIKVENDSLQEESMQYKAYKALTYEKALDILDENRIDIAVIDLDLGSEFTGEDITKYILKRYSIPIFIATGKPADFDSKLIGPMVKVLNRDDMSLLNEIKKQMQSKLVRFFSKNNGFLEQQIVEFFWDHMSKNLPYWDQYTIDEIDLVLLRHTTACLNEKLYVSNSSGKYFNEYHPGEMYIYPTIKDRHHTGDIVKKNDDFFIILTPSCDIVNNKNDYYVLARIINYDKNNNSNRIPERFYFIKNFAKIFEVDNKDKEILEPSICFQGLISVKKEEISDYARVASISYPFLKDIIAKFSRYYARQGSPEIIEELK
>NZ_CP017877.1|WP_071315226.1|39770_41969_+|sensor-histidine-kinase
MKKELKIRPEARLIKTIGEDLIKNPYAAVVELIKNSYDADSEIVIVSIELTNEYVYDKKQKFLKFTIEDDGEGMSLETIKNTWMVPATSYKVNKQYSSKKKRVVQGKKGIGRYASAILGDFLRITTTDLNGMTSIIEIDWKQFDDGKFLDEINIPYECNRTNLKSGTKIEIYSSIEVYYDEIKQQYQDKINWNDNQNNLLFKELRKLLVPVDKSNEIFEIRFSTNGLIEFEIEDKNEKIEPFPLLDFYEYRIKGKISSNGKGLLFYENKNFENSNEKIELDLRNTCGNIEVDLMVFDLDPDVIQNLVNKQKDKEEKQLGKSEFKALIKQYSGVGIYRNLFRIRPYGDYDFDWLGLNARRVNSPTMSISTNQIAGFVNIESENKSNLIEKSDREGLKENENYDNLKNILLQVLNEVEKRRYEFRKNTKRGRVVANNIKDTIRDVFSFDDVNNKISVILHKANIDAHIIEKVQFELKQEEIKKNNGLKNIEEVLAMYEAHAALGKLVLYVLHEGRKPMQIIGLKLNNLKKSLQRFIKTKDESIEQDIKKYNEDSLSQLEKLSNLFKRLDPLMITRSSRRKEVNLYQNALNNYELFKEILKRENIDFEIQCENKELFIYGRDEDLYIIYSNLIENSLYWFQATKQMQKKITISIYRDSNYFYIDYKDNGIGVKKEHANLIFDPGFSTKPEGGTGIGLTIVGQAVSRNDGEIKYIRADEGVYFKICFKDTQNEQTS
>NZ_CP017877.1|WP_002809050.1|38903_39518_+|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP017877.1|WP_002825527.1|38529_38907_+|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCTKDFHQKLKEFIEKTPKNQKLKDLER
>NZ_CP017877.1|WP_023890668.1|38215_38539_+|hypothetical-protein
MAYPLLGTKIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKIDKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP017877.1|WP_002828964.1|37782_38046_-|TrbC/VirB2-family-protein
MKIKLLSLILLSPIFVFAAGGIDKVNTFMQNLSTALYALGAVLLTIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT
>NZ_CP017877.1|WP_079865901.1|47412_48126_-|DUF4435-domain-containing-protein
MYEGENNSLDFKIYSVLYPQYQIITCGSCEKVIQYTKAFNDQSALHGFKAYGIIDRDYRSQNEINALMNKDINVLKVAEVENLFLLECIVLAVLKQSGRENKFEEIKNYLFEEKFKNCLEKQILENLKSEIKHKLNTIDINLKTSDKIKEKINSIEEFINFDDLHKNISNKFNSVYKEKNYNELLKVFNKKEIYKDNGFLNKVGRTEESYIKEVLKLLKENKKLRKEVLKYINLPEI
>NZ_CP017877.1|WP_071315228.1|48098_48920_-|ATP-binding-protein
MENKQYIYNLPNESNEKQKLETNTNSIIIVGANGSGKSKLGAWMGKNNNHTHIIASKRLTYISENLSIWLETDVQKQDDDTDIKNTQDDYDDTISILFRQQIKELCSRDKNKPFKTRIDYLFEIFNKVTQKELNINKNRFCINSKDKSYDLTNFSRGEELILYLISKILTIPNNEQQIIIIDEPELHLHPSLTNRLWDILEKHRQDCLFIYITHDLNFASSRTNSDKFWIKSYNGEKWEFEQISTNEIMPQELFLKLLGTRRNVLFMKVKTIA
>NZ_CP017877.1|WP_038834145.1|49199_49463_-|EexN-family-lipoprotein
MKNTIKLALLGVVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSFQKPLSSAKDFFKNNK
>NZ_CP017877.1|WP_071315229.1|49570_50800_-|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWLYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTATDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NZ_CP017877.1|WP_057040392.1|50881_51541_-|hypothetical-protein
MNNTINFNDLFSQIRLSSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP017877.1|WP_057040391.1|51544_52156_-|hypothetical-protein
MEKDYKIKVTDVSKLNEHYKEAIQEGTYEGEDVNKFFDTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLTKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGAMISEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP017877.1|WP_052802429.1|52186_52468_-|hypothetical-protein
MLKESKLIVELKREYDEKLKKLRQKEKENKERIYKKLSSALLKDFEENKNFRNEFNSLIEKFNCENTKRILEIINNLYDFNHKSDKINTAKKQ
>NZ_CP017877.1|WP_002801488.1|52660_53212_+|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDKFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP017877.1|WP_071315230.1|53211_54600_+|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYAKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKATNKKQREVEINQEISVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERIVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTSVRNNEIKRDG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	123269-123314	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	46640-46685	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	17757-17802	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP017230	Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.1, complete sequence	21632-21677	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	128999-129044	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP017030	Campylobacter jejuni subsp. jejuni strain 14980A plasmid pCJ14980A, complete sequence	7038-7083	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	21862-21907	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP017877	Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence	46808-46853	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	141112-141157	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	32212-32257	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	31894-31939	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	29248-29293	0	1.0
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP022078	Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence	1054-1099	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	46027-46072	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP045046	Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence	18813-18858	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	20965-21010	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP017854	Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence	4060-4105	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	37895-37940	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	3763-3808	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_CP044170	Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence	19005-19050	1	0.978
NZ_CP017877_1	1.1\|46808\|46\|NZ_CP017877\|PILER-CR	46808-46853	46	NZ_MK541987	Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence	22248-22293	1	0.978
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP017030	Campylobacter jejuni subsp. jejuni strain 14980A plasmid pCJ14980A, complete sequence	7113-7174	2	0.968
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP017877	Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence	46883-46944	2	0.968
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP017230	Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.1, complete sequence	21541-21602	7	0.887
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	123178-123239	8	0.871
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	21937-21998	8	0.871
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	32287-32348	8	0.871
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	46549-46610	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	141021-141082	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	29157-29218	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP022078	Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence	963-1024	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	37804-37865	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	3672-3733	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	46102-46163	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP044170	Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence	19080-19141	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_MK541987	Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence	22323-22384	9	0.855
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	17666-17727	10	0.839
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	129074-129135	10	0.839
NZ_CP017877_1	1.2\|46892\|62\|NZ_CP017877\|PILER-CR	46892-46953	62	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	31969-32030	10	0.839

1. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

2. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

3. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

4. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP017230 (Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.1, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

5. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

6. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP017030 (Campylobacter jejuni subsp. jejuni strain 14980A plasmid pCJ14980A, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

7. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

8. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP017877 (Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

9. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

10. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

11. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

12. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 0, identity: 1.0

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcacccataagtta	Protospacer
**********************************************

13. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP022078 (Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

14. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

15. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP045046 (Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

16. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP017857 (Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

17. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP017854 (Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

18. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

19. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to CP013735 (Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

20. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_CP044170 (Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

21. spacer 1.1|46808|46|NZ_CP017877|PILER-CR matches to NZ_MK541987 (Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence) position: , mismatch: 1, identity: 0.978

attatatttatgtcagcaaaatcagcatacaatcacccataagtta	CRISPR spacer
attatatttatgtcagcaaaatcagcatacaatcactcataagtta	Protospacer
************************************.*********

22. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP017030 (Campylobacter jejuni subsp. jejuni strain 14980A plasmid pCJ14980A, complete sequence) position: , mismatch: 2, identity: 0.968

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	Protospacer
************************************************************

23. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP017877 (Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence) position: , mismatch: 2, identity: 0.968

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	Protospacer
************************************************************

24. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP017230 (Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.1, complete sequence) position: , mismatch: 7, identity: 0.887

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaacagggac	Protospacer
*****************************************************  .** .

25. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.871

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaataggagc	Protospacer
*****************************************************  .*. .

26. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.871

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaataggagc	Protospacer
*****************************************************  .*. .

27. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 8, identity: 0.871

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaataggagc	Protospacer
*****************************************************  .*. .

28. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgatattttttcggaacacccatatggaaaataggagc	Protospacer
*************************.***************************  .*. .

29. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgatattttttcggaacacccatatggaaaataggagc	Protospacer
*************************.***************************  .*. .

30. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgatattttttcggaacacccatatggaaaataggagc	Protospacer
*************************.***************************  .*. .

31. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP022078 (Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaaaccccatatggaaaatagggac	Protospacer
**************************************  *************  .** .

32. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaaaccccatatggaaaatagggac	Protospacer
**************************************  *************  .** .

33. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to CP013735 (Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaaaccccatatggaaaatagggac	Protospacer
**************************************  *************  .** .

34. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaaaccccatatggaaaatagggac	Protospacer
**************************************  *************  .** .

35. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP044170 (Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaaaccccatatggaaaatagggac	Protospacer
**************************************  *************  .** .

36. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_MK541987 (Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence) position: , mismatch: 9, identity: 0.855

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgacataaatagaatagtttttgacattttttcggaaaccccatatggaaaatagggac	Protospacer
**************************************  *************  .** .

37. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.839

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttgatataaatagaatagtttttgatattttttcggaacacccatatggaaaataggagc	Protospacer
****.********************.***************************  .*. .

38. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 10, identity: 0.839

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttaacataaatagaatagtttttgatattttttcggaacacccatatggaaaataggagc	Protospacer
**.**********************.***************************  .*. .

39. spacer 1.2|46892|62|NZ_CP017877|PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 10, identity: 0.839

ttgacataaatagaatagtttttgacattttttcggaacacccatatggaaaaataggct	CRISPR spacer
ttaacataaatagaatagtttttgatattttttcggaacacccatatggaaaataggagc	Protospacer
**.**********************.***************************  .*. .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP017876

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017876_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017876_1

10940-11047

TypeV

Consensus_repeat	Method
TTTTTTTCATTTTCTTGAGACAAAAT	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP017876_1

>merge|NZ_CP017876|1|10940-11047|CRISPRCasFinder
TTTTTTTCATTTTCTTGAGACAAAATATAGATTTTTTGCTTTTGTCTCAAAATATGATACATTTTTAACATTTGAATGTTTATTTTTTTCATTTTCTTGATACAAAAT

>NZ_CP017876|1|1|10940-11047|CRISPRCasFinder
TTTTTTTCATTTTCTTGAGACAAAAT	ATAGATTTTTTGCTTTTGTCTCAAAATATGATACATTTTTAACATTTGAATGTTTA
TTTTTTTCATTTTCTTGATACAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017876.1\|WP_032701215.1\|3124_3349_-\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP017876.1\|WP_002784930.1\|12445_12859_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350205
NZ_CP017876.1\|WP_071315210.1\|14733_15057_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017876.1\|WP_002784330.1\|17915_19154_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP017876.1\|WP_071315208.1\|12855_13701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017876.1\|WP_002784932.1\|11770_12433_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NZ_CP017876.1\|WP_071315206.1\|6604_9070_-\|conjugal-transfer-protein-TrbE	unknown	unknown	gnl\|CDD\|184375
NZ_CP017876.1\|WP_002790743.1\|930_1626_-\|conjugal-transfer-protein-TrbF	unknown	unknown	gnl\|CDD\|237544
NZ_CP017876.1\|WP_061425930.1\|9073_9364_-\|conjugal-transfer-protein-TrbD	unknown	unknown	gnl\|CDD\|184348
NZ_CP017876.1\|WP_045243733.1\|5741_6374_-\|TrbM-protein	unknown	unknown	gnl\|CDD\|369359
NZ_CP017876.1\|WP_002838518.1\|11067_11778_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017876.1\|WP_071315207.1\|9669_10605_-\|P-type-conjugative-transfer-ATPase-TrbB	unknown	unknown	gnl\|CDD\|274297
NZ_CP017876.1\|WP_045243731.1\|4732_5287_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP017876.1\|WP_002784998.1\|9363_9660_-\|conjugal-transfer-protein-TrbC	unknown	unknown	gnl\|CDD\|184376
NZ_CP017876.1\|WP_071315209.1\|14403_14739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017876.1\|WP_002817206.1\|19140_19614_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP017876.1\|WP_053868662.1\|3392_4145_-\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NZ_CP017876.1\|WP_071315211.1\|15256_15640_+\|DNA-transfer-protein	unknown	unknown	gnl\|CDD\|184361
NZ_CP017876.1\|WP_079865898.1\|1956_3198_-\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NZ_CP017876.1\|WP_071315212.1\|15602_17756_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|237539

Protein	Function_ID	Function_description	E-value
NZ_CP017876.1\|WP_002784930.1\|12445_12859_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350205	cd09854, PIN_VapC-like, VapC-like PIN domains of VapC and Smg6 ribonucleases, ribosome assembly factor NOB1, rRNA-processing protein Fcf1, Archaeoglobus fulgidus AF0591 protein, and homologs. PIN (PilT N terminus) domains of such ribonucleases as the toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC, as well as, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1, are included in VapC-like this family. Also included are the PIN domains of the Pyrobaculum aerophilum Pea0151 and Archaeoglobus fulgidus AF0591 proteins and other similar archaeal homologs. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.03907e-10
NZ_CP017876.1\|WP_002784330.1\|17915_19154_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.96831e-35
NZ_CP017876.1\|WP_002784932.1\|11770_12433_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	6.28997e-12
NZ_CP017876.1\|WP_071315206.1\|6604_9070_-\|conjugal-transfer-protein-TrbE	gnl\|CDD\|184375	PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.	0
NZ_CP017876.1\|WP_002790743.1\|930_1626_-\|conjugal-transfer-protein-TrbF	gnl\|CDD\|237544	PRK13887, PRK13887, conjugal transfer protein TrbF; Provisional.	7.59425e-54
NZ_CP017876.1\|WP_061425930.1\|9073_9364_-\|conjugal-transfer-protein-TrbD	gnl\|CDD\|184348	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional.	6.85957e-35
NZ_CP017876.1\|WP_045243733.1\|5741_6374_-\|TrbM-protein	gnl\|CDD\|369359	pfam07424, TrbM, TrbM. This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation.	2.91416e-45
NZ_CP017876.1\|WP_071315207.1\|9669_10605_-\|P-type-conjugative-transfer-ATPase-TrbB	gnl\|CDD\|274297	TIGR02782, conjugal_transfer_protein, P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation].	1.59578e-144
NZ_CP017876.1\|WP_045243731.1\|4732_5287_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	7.71456e-26
NZ_CP017876.1\|WP_002784998.1\|9363_9660_-\|conjugal-transfer-protein-TrbC	gnl\|CDD\|184376	PRK13892, PRK13892, conjugal transfer protein TrbC; Provisional.	1.64851e-18
NZ_CP017876.1\|WP_002817206.1\|19140_19614_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.03254e-45
NZ_CP017876.1\|WP_053868662.1\|3392_4145_-\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	1.75463e-24
NZ_CP017876.1\|WP_071315211.1\|15256_15640_+\|DNA-transfer-protein	gnl\|CDD\|184361	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ.	1.70377e-13
NZ_CP017876.1\|WP_079865898.1\|1956_3198_-\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	1.05797e-34
NZ_CP017876.1\|WP_071315212.1\|15602_17756_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|237539	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional.	4.63307e-83

>NZ_CP017876.1|WP_071315207.1|9669_10605_-|P-type-conjugative-transfer-ATPase-TrbB
MSNIEFQARINEKIKREFGDIFFYLEDKETIELMLNSDGKLWLEKLGQDMICLGEFSEAKAKSIITAVSTLLDTTTNADNPILECELPLDGSRFEALLPPIVAKPTFTIRKKAVKIFTLDDYVDSNILTPKQKEVLINAIKERQNILVVGGTGSGKTTFSNAIIDGISKITPEHRIVIIEDTAELQCASANKVILRATDKVDMLRLLKATMRLRPDRIIVGETRGKEALDLLKAWNTGHPGGIATIHANSANGGLTRMEQLISEATNAKMSKLIAEAVNLIVFISKSKEGRKVKEIIKVIGYENEYITQAI
>NZ_CP017876.1|WP_002784998.1|9363_9660_-|conjugal-transfer-protein-TrbC
MKKFLILFLALGLGYALASTTGAGLPWEGPLEQIKASLSGPVAFIMSILAIIGAGAGLIWGNEFSGFIKTLFYIVIVIALIVGANSFMSLFSTSGALI
>NZ_CP017876.1|WP_061425930.1|9073_9364_-|conjugal-transfer-protein-TrbD
MEEELQRIDIYSALNKPNLIFGADRELILMVGVISFALIFTGATLLTSIIGIFLFFFCNMLLRLMAKSDPLMRQIFLRQIKYKKFYYAQSTPFSKD
>NZ_CP017876.1|WP_071315206.1|6604_9070_-|conjugal-transfer-protein-TrbE
MLALKEFRSKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRAGDISSMTINERNTLSARINSVLKTLGNGWAVHIDCSRIKTENYIDGDTFYKSNIAQILENERKHYFDNVEHFENLFTMIFTYLPPHKSINKITDLMIIDETKNKNQGDKILEYFKNTLQKLEDSLSNYIKIERMLPRIAIDEYNNEYILDDMLEYINFCICGERQKIILPNAPMFLDCLLGGRHFETGMHPRIDSQYIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFIFLDDFEAQNSLNKYRKKWQQKTKGWLDQLLDRPARKQDDHAVLMVQELDSALSESKSGMIGYGYYTANIVVFDRDYESLEYKLKDIRKVLENLGFLSRTETINSVEAYLGTLPGFVYPNLRRPVLNTLNLTHLIPLASIWAGEKYNPSDKFPPNSPPLMQVVTSGNTPFRLNLHVSDLGHTLIFGPPGSGKSTLLANIFLAWQKYPNAKIYAFDKGQSLLAPTLATGGIHYDVAGDHSSLAFAPLANIKTDAEIAWAEFWIETCLKLQNVNITPKQKKLIHEALISHINTNSTSLTEFVSALQDSDLRDALNYYTISGTGGFLFDSEEDKLSLSSITTFEIEELMNLGDQYIIPALLYIFNRIEKGLDGSPTLLIIDEAWIALKHPAFKDKIVNWLKVLRKANVAVIMATQSLSDSAKSGILDILQEYCPTKIFLPNPEAYKKGSENVLAPYDFYKIFGLNDVQISIINNAIQKREYYYTSPLGTRLFNLALGKTNLAFTTISDKVSVKRVRQLYEKHKENWAYKWLEEKEINYKRFDNSQKEQI
>NZ_CP017876.1|WP_045243733.1|5741_6374_-|TrbM-protein
MASLLLFIGSNAFADDVLTGDTKLACEAILCLSSGTRPAECGPSLARYFAIHFKKPWKTIDARRAFLNLCPIQNDANIEDLVLNNLVDDVLPVSDPRQCTPNYLNTQVETKRSYSTFGIMSYRINPNMPNFCHALINHAYTDYKTPKYKCTGEFYNSLEWKLSAKLQLITQQAYESLSDDQRYMISRTCGDRNCYDYYQKIPFTKECWTY
>NZ_CP017876.1|WP_045243731.1|4732_5287_-|hypothetical-protein
MSKVILFENEELGQVRTIRDKNNEPLFCLNDICKILNIKKTNSVRDSINKEFDKGGVFEWHPFKTLGGIQKFIVINEPELYFVLMRSDKPKAKPFRQWVIKEVLPSIRKQGYYASNNAPKLENYNKYKIPNTPYKENIIKAIMQTEQNRNCEFEELIAYEIKEIYKDNKSHIEQKINFKVKGLI
>NZ_CP017876.1|WP_053868662.1|3392_4145_-|P-type-conjugative-transfer-protein-TrbJ
MKKSLFGVKKATSTIIATLIIGTNNAFAGGIPVIDVSAIANQVKDYAMQLQQYEQMYSQLQQQIQMVQMQKQNLERLTKEDWDNLGTVLYQTRNVMNKVNGISYDIGNVSRKFEDTYKNFEGYSNDLENATNESERNKIYSDRYKQIAETNQNTFNGTLQQLELRYQDLESEDVLIAKLKQNSQNSNGNLQAVQATNDLLAYQIDEIRKLRSVIMDQSNMLTNYLASQNNEKILDDAKYKKISIRTIREF
>NZ_CP017876.1|WP_032701215.1|3124_3349_-|EexN-family-lipoprotein
MKKIVFCIAISLTLIYLSGCGESAKTKEYYKSHLEEAKIRVAECKKMEKINETQQLDCENANEALLSKRTIKAF
>NZ_CP017876.1|WP_079865898.1|1956_3198_-|P-type-conjugative-transfer-protein-TrbL
MKRNNLIVKMLTKLYLAKELLRRFKNLIIFIFLLLPNLAFGLENSNGVLDLLQNGLESWIPLIKTACLWVFWTLVVIDLVWTFGLKALSGFEFGDFLATLIKKIMYIGIFLFLFNTDQWLQILFNSFSQLATGVSNGIKITPSNIVTSGVEILLSIWEAAGLNLAKTLFLLICGLIILIGFLLMAIDLLIVYLKFFLMNVIVFFALALGGLNHFKQIGLNPIMTAIKIGIELLMIQGLMALAINITNSAFKEIAQNLTIDLTLQILVIALIFCIITKMIPGIIEAVFNGSIGESAGAAAGFRAVATMAAGAATGAAVGAVGVTRAMNAAKALHLAEGGAGGMDLVKGVAKNLASAGGEHLRDNLTRGRMPNQMANRLQEKLRDIQGKASEGGISAGTPKEESYQSGVNPDVAK
>NZ_CP017876.1|WP_002790743.1|930_1626_-|conjugal-transfer-protein-TrbF
MNIFRQKQKIEKNEFDTSSNPYLNAKTEWLERYGDYITRAKNWQMVAIISLAMCFVCVLFIGYIGSQNKLIPYVIEVDKLGNTAKVGMVQNIDLKNPNVIKYSLNTFIYSWRSVWGNAETQRKFIFDAYAYVEPRSKAFNYLNSEFQKNNPFTRSTKENVRVKIKNIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLIRIKQIIPNTEEQILKNPLGIFITDINFAKIL
>NZ_CP017876.1|WP_002838518.1|11067_11778_-|hypothetical-protein
MSKISNQQGRDVQKNGISGYTRVIGNNELGQLLSRVQACVISNGNELEKLLISRCSIIEDIDIFIKNVEKNNIQQGTFLCTKRILKQTQKYKEVIKGIEPDMIIFIVSNFRICKIIELKDGDMFDTKKVKGEKANLITFTEKFGAKIPFSTDYYICCFNQNNKEVIKEGMKNEFELEHIMTGKELCEILNIEYQEILNIRKKDMEDNFNYFIEELLKIPEVLEKIKQISYPLCKNE
>NZ_CP017876.1|WP_002784932.1|11770_12433_-|site-specific-DNA-methyltransferase
MSYETIINKKNKMNGLKLLKLIDKESIKVVFFDPQYRGVLDKLSYGNEGKSRGKERSALPQMTKENILTFINYIEQILQPNGYLFLWVDKFHLFECKEWINNFHSIDIVDMITWDKQKIGMGYRSRRRSEYLIIIQKNPKKAKSTWNIHNIPDVWIEKINNKIHTHSKPIELQKQLILATTQEEDIIVDPASGGYSVLKACKETNRKFLGCDLKFGDTHE
>NZ_CP017876.1|WP_002784930.1|12445_12859_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MKKVFLDTNIFIDFFEETRENNQQAKQLIYFLISNDIKIIFSEDMISTVAYILKKENLGKFTHFIKTISLEKEFEIVSFGVSVINMACDYYDKYRGDFEDYLQYFCAEKEGCCAIYTMDKNFPNLKIPVKRYGEIDI
>NZ_CP017876.1|WP_071315208.1|12855_13701_-|hypothetical-protein
MKEIVDLENKPVTRLYSKVEEKVDNITGEVTTIVSSFLQKEKTKDDFIKLFVENINYLTDNLSNSALRVVLMMFKNLNYQNIFHYNSDFVSYFTNKKILGKSSVYRAIKELEDKNVIFKITKEQQEEYDIISPNSYIMNPQIIGKGSFKDLKKLRQTTIKEFDFEKLEMIQKVEVESEYEGLDEVKENPENYYIEDIKQIAYPNTIENQIIISKKEVEADNQTLIANDTQPSLFDENQKEQKARLFIEKFGGMFSGAYHPTKSAKELKREKLDQDLKEGKI
>NZ_CP017876.1|WP_071315209.1|14403_14739_+|hypothetical-protein
MEKSKKERIEKLSEKTKDLNLDNELYIFVNNIKWGKKANILINCVDLGTNIEFYFSVFFSNKYFSRSGDFNFREYMENFFENSRILAVKFKRSKAGYLNCFSARIAEVSDL
>NZ_CP017876.1|WP_071315210.1|14733_15057_-|hypothetical-protein
MKRGFAKIEFFANLEYLKQEYNKGYVVSKILYEKAKQDKNISMVYSQFNKYFNEVFKNKIEKKEIAQENNQSLTLENKEPIKLKINTKSKKVFDAKFGKDIKEDDLL
>NZ_CP017876.1|WP_071315211.1|15256_15640_+|DNA-transfer-protein
MRKDKRIAIRLSEDEYKHIMQKAQNHGLTISRYLRDLSMNYPITCIVDQKVAHNVLNIAGDIGRLGGLFKHWLVRNEDNKANFSNKRTYNDIDEIVDQILDLQILLKEQAKRIIQNDNQKDSKQKAE
>NZ_CP017876.1|WP_071315212.1|15602_17756_+|relaxase/mobilization-nuclease-domain-containing-protein
MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNEMDKVEGYHFTNCSFDNDEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDENPTLEILQAIEEEIAKSLGMEDHQRLSVVHSNTNNLHIHIAINKVNPHTLKVINPYNDVRILQETAMKLEKKYNLKLDNHISQKDKQSNKYNHSMNCNFETWVKEKLSKQVDLMLKDEKTTFKDIKQFLAEYDLEFRERRKGFVIASKSEKLFCKASSIHRGLSKQALEKRFKELDLKQEKENTQNIKEEKHEIKEQYQRPNKETSKTLWEKYLRIENEKKAELDKELRMLKLRRNEFKTSIPSMKFNKNTFAHVKNQRMIFKNKQKELYQKYKRVSYRDFLISESLSGNEEATRALRRTKTKINENENTLSSTQEKPKIFENVDYITKEGYAVYKSGFNKAIDKGEMLKVSLINDKDDKEFLLNSLLMAIDRFGNHLNITGDDKFKRNILEVANDYNLNVSFSDQRMQKIQEENNNKRKEMKTRKVLKNIIELKIKLTEQDKDIDENIKEKELKALKFSLKKISNSTPSIFKGELKKLGFSYKEIDSMDTESVCIEIDGFIVNSANKEGLIAMNEEIKQTLIDDEEIKRFEKFEHLFLNTNKITDIAKGFYTNRKIDADEYIKRFSMQESKINKVANAISMLSDKNIDIMEKYAKKLEKDLKYQYLKKVEVIENNDINLNNF
>NZ_CP017876.1|WP_002784330.1|17915_19154_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MQITKGFKYRIYPNLEQQKLLNHQFFIYNQAYNIILDLQKKQMQINKNLDKSQRTYLTAVQLDNKVKEILRQRELAFKSVVTQQARINLLRALKDKTKGFPKFKNSKFAKQSFNWNNQGYQIKDSNNPKFKIFHLMKLPLKMRYHKDLPQNYKLNQITISKSHNKYFVSFSITYENPSVSLISSQNLDIKKAVGIDLNINEIALSSGRLIKTNSKLISKAKYDNAFKRLQRKQSRRVLRAKKEKVKLGANFFKTQIELNRIYEKASNIKKDLQHKITSQIVNDFDLIAVEALQTKNMTKRAKLKNVKVKSGLNKSILDTSFYQFLSFLEYKTSHNGKIFTKIPPQYTSKTCSKCGSIKADLRLSDRIYICKECGNEMHRDINASINILNRALESFELGINSLDYKQQALCVS
>NZ_CP017876.1|WP_002817206.1|19140_19614_-|IS200/IS605-family-transposase
MQIEYDINLHSVFLLQYHLILVVKYRREVIDDKICARLKEIFEYIAKNDNYSLELIEFNHDKDHLHILFKAKPKSELLKFINAYKSASSRLIKKEFPHLKQYLWKQYFWSGSYFLATTGGVTLDILKQYVENQGIEDNRVKKQYKNTKRKRLLNANN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017876_1	1.1\|10966\|56\|NZ_CP017876\|CRISPRCasFinder	10966-11021	56	NZ_CP017876	Campylobacter coli strain ZV1224 plasmid pCCDM224S, complete sequence	10966-11021	0	1.0
NZ_CP017876_1	1.1\|10966\|56\|NZ_CP017876\|CRISPRCasFinder	10966-11021	56	NZ_CP040242	Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence	11797-11852	0	1.0
NZ_CP017876_1	1.1\|10966\|56\|NZ_CP017876\|CRISPRCasFinder	10966-11021	56	NC_022656	Campylobacter coli 15-537360 plasmid pCC42yr, complete sequence	2581-2636	0	1.0
NZ_CP017876_1	1.1\|10966\|56\|NZ_CP017876\|CRISPRCasFinder	10966-11021	56	CP013736	Campylobacter coli strain OR12 plasmid pOR12CC42, complete sequence	18106-18161	1	0.982
NZ_CP017876_1	1.1\|10966\|56\|NZ_CP017876\|CRISPRCasFinder	10966-11021	56	NZ_CP011016	Campylobacter coli strain FB1 plasmid pCC42, complete sequence	12284-12339	1	0.982

1. spacer 1.1|10966|56|NZ_CP017876|CRISPRCasFinder matches to NZ_CP017876 (Campylobacter coli strain ZV1224 plasmid pCCDM224S, complete sequence) position: , mismatch: 0, identity: 1.0

atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	CRISPR spacer
atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	Protospacer
********************************************************

2. spacer 1.1|10966|56|NZ_CP017876|CRISPRCasFinder matches to NZ_CP040242 (Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence) position: , mismatch: 0, identity: 1.0

atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	CRISPR spacer
atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	Protospacer
********************************************************

3. spacer 1.1|10966|56|NZ_CP017876|CRISPRCasFinder matches to NC_022656 (Campylobacter coli 15-537360 plasmid pCC42yr, complete sequence) position: , mismatch: 0, identity: 1.0

atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	CRISPR spacer
atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	Protospacer
********************************************************

4. spacer 1.1|10966|56|NZ_CP017876|CRISPRCasFinder matches to CP013736 (Campylobacter coli strain OR12 plasmid pOR12CC42, complete sequence) position: , mismatch: 1, identity: 0.982

atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	CRISPR spacer
atagattttttgcttttgtctcaaaatatgatacatttttaacaattgaatgttta	Protospacer
******************************************** ***********

5. spacer 1.1|10966|56|NZ_CP017876|CRISPRCasFinder matches to NZ_CP011016 (Campylobacter coli strain FB1 plasmid pCC42, complete sequence) position: , mismatch: 1, identity: 0.982

atagattttttgcttttgtctcaaaatatgatacatttttaacatttgaatgttta	CRISPR spacer
atagattttttgcttttgtctcaaaatatgatacatttttaacaattgaatgttta	Protospacer
******************************************** ***********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017875

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017877

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP017876

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection