CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP017878	Campylobacter coli strain BG2108 chromosome, complete genome	0 crisprs	csa3,cas14j,DEDDh	0	2
NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	1 crisprs	NA	1	0
NZ_CP017880	Campylobacter coli strain BG2108 plasmid pCCDM108S, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

428256 : 436932

Escherichia_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002779233.1\|428256_428919_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-06	21.3
WP_002795151.1\|428918_430034_+	capsule polysaccharide transporter	NA	NA	NA	NA
WP_052785723.1\|430035_431667_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_072235018.1\|431693_432641_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	3.4e-40	33.1
WP_052785725.1\|432665_433553_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.7e-103	62.5
WP_052785726.1\|433559_434135_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	1.8e-28	42.0
WP_052785727.1\|434127_435009_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.0e-32	35.5
WP_052785728.1\|435005_436013_+	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	6.5e-82	47.9
WP_052785729.1\|436005_436932_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.7e-15	36.2

DBSCAN-SWA_2

1392477 : 1462312

Campylobacter_phage(38.24%)

tRNA,plate,tail,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002795454.1\|1392477_1393455_-\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	1.4e-12	25.3
WP_002784520.1\|1393448_1393640_-\|tail	tail protein	NA	NA	NA	NA
WP_002784519.1\|1393632_1394007_-\|tail	tail protein	NA	NA	NA	NA
WP_002803354.1\|1394132_1395368_-	hypothetical protein	Q6QIB9	Burkholderia_phage	1.2e-29	34.7
WP_002803356.1\|1395370_1396741_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	3.8e-16	25.5
WP_002803358.1\|1396750_1398421_-\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	5.7e-91	40.8
WP_002784511.1\|1398420_1398903_-	DUF1804 family protein	NA	NA	NA	NA
WP_002784509.1\|1398895_1399354_-	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_002784507.1\|1399469_1400447_-	hypothetical protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_002791394.1\|1400449_1400977_-	hypothetical protein	NA	NA	NA	NA
WP_002794192.1\|1400979_1401795_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	6.5e-24	47.6
WP_002784501.1\|1401796_1402231_-	hypothetical protein	NA	NA	NA	NA
WP_057980528.1\|1402378_1402768_+	DUF882 domain-containing protein	A0A2I7R2R3	Vibrio_phage	1.7e-22	44.5
WP_057980529.1\|1402777_1403119_+	hypothetical protein	NA	NA	NA	NA
WP_002790263.1\|1403115_1403364_+	hypothetical protein	NA	NA	NA	NA
WP_002790261.1\|1403475_1403790_+	hypothetical protein	NA	NA	NA	NA
WP_002865465.1\|1403879_1405406_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
WP_071306715.1\|1405402_1406785_+	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	6.3e-11	23.2
WP_002870187.1\|1406901_1408035_+	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002918728.1\|1408173_1408653_-	hypothetical protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
WP_002918730.1\|1408639_1408831_-	hypothetical protein	NA	NA	NA	NA
WP_002909839.1\|1408882_1409311_-	hypothetical protein	NA	NA	NA	NA
WP_002864977.1\|1409307_1409487_-	hypothetical protein	NA	NA	NA	NA
WP_002790266.1\|1409610_1409976_-	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|1409972_1410326_-	hypothetical protein	NA	NA	NA	NA
WP_019108985.1\|1410322_1410592_-	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|1410591_1411479_-\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_002790001.1\|1411478_1412519_-	hypothetical protein	NA	NA	NA	NA
WP_002865847.1\|1412649_1413114_+	DUF1804 family protein	NA	NA	NA	NA
WP_071306716.1\|1413110_1413608_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	8.6e-11	35.2
WP_002791385.1\|1413607_1413820_+	hypothetical protein	NA	NA	NA	NA
WP_057981095.1\|1413816_1414107_+\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	1.8e-08	37.8
WP_057981097.1\|1415255_1415876_+\|tail	phage tail protein I	A7YGG0	Campylobacter_phage	6.0e-54	90.6
WP_002803380.1\|1415875_1416910_+\|tail	phage tail protein	A7YGA7	Campylobacter_phage	2.6e-78	88.8
WP_002784668.1\|1416919_1417555_+	hypothetical protein	NA	NA	NA	NA
WP_002784666.1\|1417554_1419312_+	radical SAM protein	NA	NA	NA	NA
WP_002789987.1\|1419304_1419691_+	DUF1353 domain-containing protein	A7YGM3	Campylobacter_phage	9.2e-61	88.4
WP_002789981.1\|1422032_1422548_+\|tail	tail protein	Q858V0	Yersinia_virus	2.6e-10	26.3
WP_002789979.1\|1422558_1422795_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002789978.1\|1422902_1423133_-	hypothetical protein	NA	NA	NA	NA
WP_071306756.1\|1423162_1425127_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002789966.1\|1425128_1425503_+\|tail	tail protein	NA	NA	NA	NA
WP_002789964.1\|1425495_1425687_+\|tail	tail protein	NA	NA	NA	NA
WP_002789955.1\|1425680_1426649_+\|tail	phage tail protein	A0A219YB01	Aeromonas_phage	2.5e-14	27.5
WP_002794205.1\|1426975_1427485_+\|tail	tail protein	A7YGZ4	Campylobacter_phage	5.6e-90	99.4
WP_002791367.1\|1427588_1427828_+\|tail	phage tail assembly protein	A7YG75	Campylobacter_phage	1.5e-08	89.9
WP_002791365.1\|1427939_1428245_-	hypothetical protein	A7YG88	Campylobacter_phage	1.9e-32	90.1
WP_002806799.1\|1428286_1430620_+\|tail	phage tail tape measure protein	A7YGE8	Campylobacter_phage	0.0e+00	89.7
WP_002791360.1\|1430623_1431112_+	virion morphogenesis protein	A7YGZ0	Campylobacter_phage	8.6e-80	90.7
WP_002784651.1\|1431979_1432267_-	hypothetical protein	A7YGG4	Campylobacter_phage	1.6e-46	97.9
WP_002784648.1\|1432346_1432541_-	hypothetical protein	A7YG72	Campylobacter_phage	1.1e-27	96.9
WP_002784647.1\|1432550_1432871_-	hypothetical protein	A7YG71	Campylobacter_phage	1.6e-50	97.2
WP_071306757.1\|1432951_1433575_-	S24 family peptidase	A7YGK7	Campylobacter_phage	2.8e-59	98.2
WP_002803230.1\|1434187_1435825_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-13	33.1
WP_002778424.1\|1435891_1436659_-	hypothetical protein	NA	NA	NA	NA
WP_002778423.1\|1436627_1437851_-	hypothetical protein	NA	NA	NA	NA
WP_002778421.1\|1438131_1438716_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.2e-19	37.4
WP_002778419.1\|1438747_1439125_-	hypothetical protein	NA	NA	NA	NA
WP_004284883.1\|1439175_1439511_-	hypothetical protein	NA	NA	NA	NA
WP_002799636.1\|1439500_1441078_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.2e-51	27.1
WP_002783102.1\|1441155_1441413_-	hypothetical protein	NA	NA	NA	NA
WP_002778410.1\|1441417_1441624_-	hypothetical protein	NA	NA	NA	NA
WP_002783105.1\|1441673_1442027_-	hypothetical protein	NA	NA	NA	NA
WP_002844715.1\|1442278_1442608_-	hypothetical protein	NA	NA	NA	NA
WP_002778401.1\|1442774_1442984_+	transcriptional regulator	NA	NA	NA	NA
WP_002778400.1\|1443044_1444001_+	membrane protein	NA	NA	NA	NA
WP_002789646.1\|1444005_1444578_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_002778398.1\|1444652_1445015_-	HIT family protein	NA	NA	NA	NA
WP_071306718.1\|1445124_1445805_+	hypothetical protein	NA	NA	NA	NA
WP_002778396.1\|1445823_1446528_-	sel1 repeat family protein	NA	NA	NA	NA
WP_002797318.1\|1446524_1448357_-	ATP-binding protein	NA	NA	NA	NA
WP_002778389.1\|1448346_1450533_-	ATP-binding protein	NA	NA	NA	NA
WP_002778387.1\|1450560_1451286_-	fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_002783123.1\|1451278_1453270_-	fumarate reductase flavoprotein subunit	M1HTN0	Paramecium_bursaria_Chlorella_virus	8.5e-17	26.2
WP_002778384.1\|1453253_1454039_-	fumarate reductase cytochrome b subunit	NA	NA	NA	NA
WP_002844708.1\|1454106_1454922_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_002778381.1\|1455012_1455918_+	hypothetical protein	NA	NA	NA	NA
WP_052785786.1\|1455990_1456782_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_002778371.1\|1456778_1457606_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_002778362.1\|1457618_1458164_-	DUF1882 domain-containing protein	NA	NA	NA	NA
WP_002844706.1\|1458160_1459405_-	serine hydroxymethyltransferase	A0A219YB23	Aeromonas_phage	4.5e-101	51.4
WP_002844704.1\|1459401_1460910_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	3.3e-90	40.2
WP_002778353.1\|1460909_1461380_-	transcriptional repressor	NA	NA	NA	NA
WP_002778351.1\|1461383_1461944_-	CvpA family protein	NA	NA	NA	NA
WP_002778349.1\|1462024_1462312_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017879

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017879_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017879_1

4208-4303

Orphan

Consensus_repeat	Method
AGAAATCATTACATTTAAGTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017879_1

>merge|NZ_CP017879|1|4208-4303|CRISPRCasFinder
AGAAATCATTACATTTAAGTCAATTGTTTTTTTAAAGTCCCTATTTTCCATATGTTATTTTCGTAAAAATGTCAAAAATCATTACATTTAAGTCAA

>NZ_CP017879|1|1|4208-4303|CRISPRCasFinder
AGAAATCATTACATTTAAGTCAA	TTGTTTTTTTAAAGTCCCTATTTTCCATATGTTATTTTCGTAAAAATGTC
AAAAATCATTACATTTAAGTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017879.1\|WP_057097498.1\|2033_3260_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP017879.1\|WP_057991840.1\|7482_7890_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP017879.1\|WP_002826068.1\|646_1258_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017879.1\|WP_002823273.1\|3763_4039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017879.1\|WP_002809140.1\|336_618_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017879.1\|WP_002779625.1\|8373_8637_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP017879.1\|WP_043012951.1\|1261_1915_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017879.1\|WP_002790340.1\|4741_4945_+\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|224638
NZ_CP017879.1\|WP_002801148.1\|4530_4749_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP017879.1\|WP_002779624.1\|7880_8204_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017879.1\|WP_002779628.1\|11981_12533_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017879.1\|WP_002790342.1\|4948_6742_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NZ_CP017879.1\|WP_002803413.1\|6871_7486_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP017879.1\|WP_071306730.1\|11427_11985_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP017879.1\|WP_021034322.1\|3391_3685_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP017879.1\|WP_071306760.1\|8649_11418_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346

Protein	Function_ID	Function_description	E-value
NZ_CP017879.1\|WP_002801148.1\|4530_4749_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.74784e-11
NZ_CP017879.1\|WP_057097498.1\|2033_3260_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	7.70945e-28
NZ_CP017879.1\|WP_071306730.1\|11427_11985_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	3.83592e-37
NZ_CP017879.1\|WP_002790342.1\|4948_6742_+\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	6.71147e-14
NZ_CP017879.1\|WP_002803413.1\|6871_7486_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	1.1543e-37
NZ_CP017879.1\|WP_002779625.1\|8373_8637_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.41173e-06
NZ_CP017879.1\|WP_071306760.1\|8649_11418_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP017879.1\|WP_057991840.1\|7482_7890_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	2.372e-09
NZ_CP017879.1\|WP_002790340.1\|4741_4945_+\|addiction-module-toxin,-HicA-family	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	6.85308e-14

>NZ_CP017879.1|WP_002823273.1|3763_4039_-|hypothetical-protein
MCKIIKYLDYARLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGMIGLFHTCKGLRKYKEILKSNKREEFI
>NZ_CP017879.1|WP_021034322.1|3391_3685_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYEARYSKSFDYKPQVSTKELMQKAREQNKNMELK
>NZ_CP017879.1|WP_057097498.1|2033_3260_+|hypothetical-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGVETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NZ_CP017879.1|WP_043012951.1|1261_1915_+|hypothetical-protein
MNNTINFNELFSQIRLSSYDNNIVKHYDNLKCVGKITPKLATLEIILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTIIHLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC
>NZ_CP017879.1|WP_002826068.1|646_1258_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP017879.1|WP_002809140.1|336_618_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP017879.1|WP_002801148.1|4530_4749_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP017879.1|WP_002790340.1|4741_4945_+|addiction-module-toxin,-HicA-family
MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NZ_CP017879.1|WP_002790342.1|4948_6742_+|AAA-family-ATPase
MPKRNTIETITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILERIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANGSSYAISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYKFYKENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFADYDDEFFHNKYKNENDLFFIYQSNNKVKRYIKRDDPMNQLNTKDNRFLLQKSLFD
>NZ_CP017879.1|WP_002803413.1|6871_7486_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQRLQSGDLLIATELSRLGRSMLEIINLVLEFNANNINFLFLRQRELSNFNNPSSKLILSIYAYLAENERDLISQRTKAGLENAKASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIRSIWKLFYKDSGKTYDGLLWFIKKRKLKQK
>NZ_CP017879.1|WP_057991840.1|7482_7890_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPIDERRVARIVTKLAKKFTWFGECVKEFDITEIGEQYSLKDTIQNLCIKEINKQAGYNKDFHGKFKEFIQKTPKNQKLKDLER
>NZ_CP017879.1|WP_002779624.1|7880_8204_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP017879.1|WP_002779625.1|8373_8637_+|TrbC/VirB2-family-protein
MKIKLLSLILLSPIFVFAAGGIDKVNTFMENLSTALYALGAVLLTIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT
>NZ_CP017879.1|WP_071306760.1|8649_11418_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGSIILVAFYSQNIFLVGFSIPVFFIMKAMTKKDDFIFRLMFLKMRFFSNPASKNYYKAKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKRFARCIEIKDYTNETFAGILDILMYLDVEYTITQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINFSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGELFLANTLILGQSGGGKTVFMNFIVDQMMKYASKDTFPDDIPEENRKFTAIYLDKDKGALGNILCGGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSVEDFLKLKNAATLIEQSATMVFLPNPKAKEEEYVNGIGLSYDEYMIIKGFNPAKRQFLIKRQDEKVICTLDLSSLGSENLKILSTGTAHIDTIEKIFSQENKSLDEKVLELREFYKNS
>NZ_CP017879.1|WP_071306730.1|11427_11985_+|Rha-family-transcriptional-regulator
MSNKVLINKQEVQFGTKGNQIFCTSLDVAKVFGKRHDNVLRDIENILNDLREIGTSNDLLNFEFSFKVRKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ
>NZ_CP017879.1|WP_002779628.1|11981_12533_+|hypothetical-protein
MSDKELEIFELCERLVDLLGDKEAVADLQTLLERHPEMFQNKEQVANLIKKVIHDPEIIINNPTPKSEKDYIAGKKLNEKKMGEVGIRKDENISKIFHANEKRIKNLELMAKKDVVVDGRNAHTSYTQAQSLDGRLVQKNISSATNKIIPQQNKSTNDFKAKLEEFSTKKTNAVKSINKEFKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39947-39996	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2492-2541	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	33083-33132	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5473-5522	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6604-6653	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72201-72250	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	3064-3113	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77864-77913	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25209-25258	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11714-11763	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	4066-4115	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	11000-11049	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30424-30473	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5167-5216	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17612-17661	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9361-9410	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33146-33195	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34776-34825	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16533-16582	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17073-17122	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	20905-20954	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20269-20318	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8503-8552	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18106-18155	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	18942-18991	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13094-13143	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13120-13169	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	40967-41016	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4231-4280	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13533-13582	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6212-6261	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21028-21077	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18073-18122	0	1.0
NZ_CP017879_1	1.1\|4231\|50\|NZ_CP017879\|CRISPRCasFinder	4231-4280	50	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	18541-18590	1	0.98

1. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

2. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

3. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

4. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

5. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

6. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

7. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

8. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

9. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

10. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

11. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

12. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

13. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

14. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

15. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

16. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

17. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

18. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

19. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

20. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

21. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

22. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

23. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

24. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

25. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

26. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

27. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

28. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

29. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

30. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

31. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

32. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

33. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

34. spacer 1.1|4231|50|NZ_CP017879|CRISPRCasFinder matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 1, identity: 0.98

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttcttttcgtaaaaatgtc	Protospacer
********************************* ****************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017878

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017879

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection