CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP009405	Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p78K, complete sequence	0 crisprs	NA	0	0	1
NZ_CP009360	Mycobacterium avium subsp. hominissuis strain OCU464 chromosome, complete genome	10 crisprs	cas3,csa3,DinG,DEDDh,cas4,WYL	1	6	4
NZ_CP009406	Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p18K, complete sequence	1 crisprs	NA	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42860 : 55186

Mycobacterium_phage(77.78%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071321585.1\|42860_43538_-	hypothetical protein	V5UN75	Mycobacterium_phage	1.1e-45	50.8
WP_071321586.1\|43534_43906_-	hypothetical protein	NA	NA	NA	NA
WP_071321587.1\|43902_44208_-	hypothetical protein	NA	NA	NA	NA
WP_071321588.1\|44210_44741_-	hypothetical protein	V5UQP3	Mycobacterium_phage	6.6e-17	34.8
WP_071321589.1\|44794_45373_-	hypothetical protein	NA	NA	NA	NA
WP_071321624.1\|45407_45650_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-22	65.8
WP_071321625.1\|46079_46340_-	hypothetical protein	V5UPD3	Mycobacterium_phage	2.9e-10	44.7
WP_071321590.1\|46422_47403_-	hypothetical protein	NA	NA	NA	NA
WP_071321591.1\|47404_48262_-	hypothetical protein	A0A1C9EHS9	Gordonia_phage	7.5e-55	43.2
WP_071321592.1\|48350_49004_-	hypothetical protein	NA	NA	NA	NA
WP_071321593.1\|49219_50821_-	hypothetical protein	A0A2H4PED4	Mycobacterium_phage	5.7e-72	40.7
WP_071321594.1\|50882_51377_-	hypothetical protein	V5UN98	Mycobacterium_phage	2.1e-17	36.0
WP_071321595.1\|51466_51841_-	single-stranded DNA-binding protein	A0A0U4B2E8	Arthrobacter_phage	6.2e-30	55.9
WP_084021731.1\|53698_55186_+	DUF4226 domain-containing protein	V5UPX1	Mycobacterium_phage	8.3e-17	46.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009360

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009360_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_1

316988-317091

Orphan

Consensus_repeat	Method
AAACCGCTGGTCAGAAAATCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_1

>merge|NZ_CP009360|1|316988-317091|CRISPRCasFinder
AAACCGCTGGTCAGAAAATCACGCCGATTTCGGACCAAACGGAAATCACGCGGAAATCACGCAAATCACGCTCGACGGTGAAACCGCTGGTCAAAAAATCACGC

>NZ_CP009360|1|1|316988-317091|CRISPRCasFinder
AAACCGCTGGTCAGAAAATCACGC	CGATTTCGGACCAAACGGAAATCACGCGGAAATCACGCAAATCACGCTCGACGGTG
AAACCGCTGGTCAAAAAATCACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_023861962.1\|312348_313386_+\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|240135
NZ_CP009360.2\|WP_023861960.1\|317718_318039_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_023861963.1\|311212_312322_-\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236191
NZ_CP009360.2\|WP_033719192.1\|310443_310812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_076220968.1\|315514_315835_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_019732029.1\|320650_320833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_095764636.1\|319522_319798_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_019732023.1\|317176_317452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_019732025.1\|318440_318635_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_033719194.1\|307626_308112_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|226604
NZ_CP009360.2\|WP_019732033.1\|321469_321979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_023861958.1\|319800_320241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_019732021.1\|313435_314338_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234698
NZ_CP009360.2\|WP_033719193.1\|309055_310291_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP009360.2\|WP_023861957.1\|320371_320644_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212096
NZ_CP009360.2\|WP_003874416.1\|308113_309019_+\|haloalkane-dehalogenase	unknown	unknown	gnl\|CDD\|179147
NZ_CP009360.2\|WP_033719191.1\|310898_311246_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_076220970.1\|315116_315356_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_023861956.1\|321066_321270_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP009360.2\|WP_019732026.1\|318621_319068_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_023861962.1\|312348_313386_+\|ATP-dependent-DNA-ligase	gnl\|CDD\|240135	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.	3.10705e-124
NZ_CP009360.2\|WP_023861963.1\|311212_312322_-\|ATP-dependent-DNA-ligase	gnl\|CDD\|236191	PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP009360.2\|WP_019732021.1\|313435_314338_+\|hypothetical-protein	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.16351e-46
NZ_CP009360.2\|WP_019732026.1\|318621_319068_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000228427
NZ_CP009360.2\|WP_003874416.1\|308113_309019_+\|haloalkane-dehalogenase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	0
NZ_CP009360.2\|WP_033719193.1\|309055_310291_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.65528e-109
NZ_CP009360.2\|WP_023861956.1\|321066_321270_-\|hypothetical-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	4.83912e-11
NZ_CP009360.2\|WP_033719194.1\|307626_308112_+\|NUDIX-domain-containing-protein	gnl\|CDD\|226604	COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only].	9.98609e-81
NZ_CP009360.2\|WP_023861957.1\|320371_320644_+\|hypothetical-protein	gnl\|CDD\|212096	cd01022, GH57N_like, N-terminal catalytic domain of heat stable retaining glycoside hydrolase family 57. Glycoside hydrolase family 57(GH57) is a chiefly prokaryotic family with the majority of thermostable enzymes coming from extremophiles (many of these are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57s cleave alpha-glycosidic bonds by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation.	0.00651054

>NZ_CP009360.2|WP_076220968.1|315514_315835_+|hypothetical-protein
MPCTRSCQQDTASQLSRRREAARRSVPLHCNCRDPWVCRCAEAPPSDATVDAGRAAAEHLLHAGCVPLLETKVLQALWRRGGDDRAFAERLHQLTGGLIRMRHERR
>NZ_CP009360.2|WP_076220970.1|315116_315356_+|hypothetical-protein
MRSQIAAHESWARTPDRSARTANARKAMLDKFEHQVDPDGTLPAAERARRAEHARKAHFKRLALKSARARRRRAGGDAA
>NZ_CP009360.2|WP_019732021.1|313435_314338_+|hypothetical-protein
MTEYLESLRGSFNRSLRVEGKADRTLVLYGQSITYFSDWLRTRGQPADLSSLDRDTVLQWLDHLRRRGLTTGTIRTRWRGLRRFVNWLLAEDIIRTDPLAGIVIDKPEPAPVPVLADEELAALIGACKGKKFVDRRDEAVIRLLIDCGLRVSELTGIDLEHLDLDAESVVVTGKGSRVRPAYFGARTGQALDRYLRERRNHRHASNSALFLGERGRFTPDGVRERLKVRADMAGLDSTKIHPHRFRHTNAHDFLLAGGQERDLKRLMGWRSDTMLERYGASAADHRAREAARRLKRGDRV
>NZ_CP009360.2|WP_023861962.1|312348_313386_+|ATP-dependent-DNA-ligase
MAAAEEVDVDGIAVRLTNPDKVYFPKLGSNGTKRHLIDYYRAVAGGPMLDALRDRPTHLQRFPDGIDGEEIYQKRIPQHHPDYLQTCRVTFPSGRTADALKVTHPAAIVWAAQMGTVTLHPWQVRCPDTDHPDELRIDLDPQPGVAFAQARSVAVDVLRPLLDELGLVGYPKTSGGRGIHVFLRIATDWDFVEVRRAGIALAREVERRAPDDVTTSWWKEERGARIFIDFNQNARDRTMASAYSVRRTPIATVSMPLTWDQLAGADPDDYTMATVPDLVSARENPWAAIDDVAQSIGPLLRMAEADEERGLGDMPYPPNYPKMPGEPKRVQPSRNTDLNRRNKSK
>NZ_CP009360.2|WP_023861963.1|311212_312322_-|ATP-dependent-DNA-ligase
MDLPVMPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAVRAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDEDYTGRPFRERRAALLEAVGGPGPSIHVTPATTDLDTALRWFDEFEGAGLDGVVAKPLDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGAFPMAERRRLFTELQPLVTDFEDHPWSWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLGDIVPGLGASRADHKPGKQIGAP
>NZ_CP009360.2|WP_033719191.1|310898_311246_+|hypothetical-protein
MNTTHHRKPVVAGALLAGGIAAAGMGIASAAAQPSAPHLIGPLPTDNFTVPHDWCPGQPLPMPDVRWDMNVCHHWYWVPVGGMGNVGQFVWEGDAPRQPLGGPPCYGAPICLPGL
>NZ_CP009360.2|WP_033719192.1|310443_310812_-|hypothetical-protein
MSVTAFQDLPLADRDREWDGDAAEKRVRKWAGAQDEPNEKYRDAHVWYDADKKDNFTAYKLLIADVIAGELKAVPRGVMAAGAIMDGARGGIDVPKSDIDRIKSHLAKYYQKMGESPPWERS
>NZ_CP009360.2|WP_033719193.1|309055_310291_+|cytochrome-P450
MTTAPTESAESQGLLLQLLDPANRADPYRLYAQFRERGALQLPEANLAVFLSYRDCDEVLRHPSSSSDNVNSTVAKRQAAAGAAPVRQGPPGFLFLDPPDHTRLRRLVSKAFAPRVVAALEPDIRSLVDGLLDRAADKGELEIVEDFAYPLPVAVICRLLGVPLDDEPQFSRASALLAQALDPFSTITGVPAEVASERQQAGTWLRDYFHQLIEARRSRPGDDLLSGLIAVEESGDQLTEEEIVSTCNLLLIAGHETTVNLIGNAVLAMLRDSGQWAALGADPGRAPAIVEETLRYDPPVQLAGRIALDDMVIGGVEVPAGDVMMLLLAAANRDPAEFDRPDTFDPDRKSLRHLGFGRGVHYCLGAPLARLEAGVALSAVTARFPRARLDGEPQYKTNVTLRGLSRLVVAV
>NZ_CP009360.2|WP_003874416.1|308113_309019_+|haloalkane-dehalogenase
MHTLRTPDDRFHTVPDFPYPPRYCEVSDDDGGALRVAWVEDGPAGADPVLMLHGEPSWSYLYRKMIPVLAGAGHRVVCPDLVGFGRSDKPTRREDHSYARHVEWMRALAFDVLDLHNVTLVGQDWGGLIGLRLAAEHPERFARLVVANTGLPNGDQPMADVWWRFREAITSAPQLNIGAFVQGGCRRRLSDAERAGYDAPFPSDEYCAGPRAMPTLVPTSPEDPAAAANKAAWAKLAVSPTPMLVAFSDSDPITGPMAAIFQREMRGAQGIDHPLIRGAGHFLQEDAGAELAGHIVEFLRR
>NZ_CP009360.2|WP_033719194.1|307626_308112_+|NUDIX-domain-containing-protein
MPKLSAGVLLYRTGDGVVEVLIAHPGGPFWARKDDGAWSIPKGEYDEGEEPWPAARREFAEELGLAVPAGERIDLGTLKQSGGKLVTVFAVHGDLDVTEARSNTFALEWPKGSGTLREFPEVDRVGWFPVAAARTKLLKSQHGFLDRLMAQPPVAGLSEGT
>NZ_CP009360.2|WP_019732023.1|317176_317452_+|hypothetical-protein
MTDYEGDIVDTARSVNLDDVGLPGYRAATTVSTDGTVHLILARRDRLGDDNTRYDPGCSVAEHEALGALPLEYIRRLTVARRRHRNDGAGK
>NZ_CP009360.2|WP_023861960.1|317718_318039_+|hypothetical-protein
MTTSADGSASTAPHQTPSPPTDEQALAALQAAALGLLLAGLANDGRLATEVERMIAAGAKVTAGVLGFMTAAAANGYEYEHGSREAAIDAVSADLAAVLLTAGEKS
>NZ_CP009360.2|WP_019732025.1|318440_318635_+|hypothetical-protein
MNLLGRKMLKAHVRPFVGNDRLIRLRIGADVFVMDRDEAIDLARQLVAAVDKANSAGEVVDGLR
>NZ_CP009360.2|WP_019732026.1|318621_319068_+|DNA-binding-protein
MGCDDQRELYPAIFAAVRVGLISIEAPLLRLVIHWLGDYARLKQQPGQAGVPEGLPAALTALAEAYAAVSDSRQRQEFCADAAGVVRSGYDLELGTTEAAAELGISAGGVRWHCAHGNLEHRKVGRQLMISTASIKRLKSRLDEQRGA
>NZ_CP009360.2|WP_095764636.1|319522_319798_+|hypothetical-protein
MRDSLGLPIPGVPAPVRLVHGRDPATWTRQERDDAVLYALGGRFAAAAAARGIPRPPGSAGYYQPSPNDVSYYDEAAQEWRPNPNYQPRGD
>NZ_CP009360.2|WP_023861958.1|319800_320241_+|hypothetical-protein
MPYRMKPHVELLIVKDQNGVLWHHYQNPSAATGARNLGPIIAWIGPEYLDRWLRLGLVEEISDESAAAQNRSTSAQFGGAPEPNSEFVGECIAALDRFDVPSDAGAPTCRKALRDRGLSFGNDCIAVAVRHRKTRAASLAETRAAP
>NZ_CP009360.2|WP_023861957.1|320371_320644_+|hypothetical-protein
MDLSTLITVTIGTTPTQIWPAGNGYEHRFLIVQNSGDTAVFVGDDSVSANGQMPALPLHPGANLTVPRRGGLCGVVESGTGTVTCLPIEA
>NZ_CP009360.2|WP_019732029.1|320650_320833_+|hypothetical-protein
MDNEAAQDQRFAAMATHHALDGLSDGPGQHRQDPMRSLLNQCRRARDGVDDGPSYMTMPF
>NZ_CP009360.2|WP_023861956.1|321066_321270_-|hypothetical-protein
MFTYDGTARIRTVTIEGKRWAVAVDICAALDIKNARDAVTRLDEADVATTDVRSGAAQQFEGCFSDA
>NZ_CP009360.2|WP_019732033.1|321469_321979_-|hypothetical-protein
MTDWTVTIGVPDDEVTPEMMIGWEEELQGFDASVARPRDGEVTVHLHLSAPDAMKATCVAYDAVVDHVGRRPIEIETLTEAEFARRAEEPTLPELMSAAEIADELGVRRQRVHQLRHLAAFPAPLAELRGGAVWDAAAVRKFADNWTRKPGRPRSHTADSHHRDYALGN

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Crispr_ID: NZ_CP009360_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_2

349248-349327

Orphan

Consensus_repeat	Method
TGGCGGGCCTGCATCGTCGTCGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP009360_2

>merge|NZ_CP009360|2|349248-349327|CRISPRCasFinder
TGGCGGGCCTGCATCGTCGTCGGACGCTGCCCGATTGTCCGACTCCTCAGCAGACCCTGGCGGGCCCGCATCGTCGTCGG

>NZ_CP009360|2|2|349248-349327|CRISPRCasFinder
TGGCGGGCCTGCATCGTCGTCGG	ACGCTGCCCGATTGTCCGACTCCTCAGCAGACCC
TGGCGGGCCCGCATCGTCGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_011723522.1\|352495_353920_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009360.2\|WP_003873375.1\|346195_346573_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_003873365.1\|355650_356262_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009360.2\|WP_023873928.1\|356276_356984_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP009360.2\|WP_033719186.1\|339548_340685_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_033719184.1\|346569_347394_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP009360.2\|WP_003877009.1\|351188_352451_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|367049
NZ_CP009360.2\|WP_023869927.1\|342054_342393_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_003873367.1\|354402_355140_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|223929
NZ_CP009360.2\|WP_033719182.1\|349350_351177_+\|DNA-polymerase-III-subunit-gamma-and-tau	unknown	unknown	gnl\|CDD\|237866
NZ_CP009360.2\|WP_033719185.1\|343774_345463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_080691804.1\|355274_355625_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009360.2\|WP_003873376.1\|345560_346052_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368465
NZ_CP009360.2\|WP_033719180.1\|356976_358227_-\|DUF1727-domain-containing-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP009360.2\|WP_023869922.1\|338442_339510_-\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|226326
NZ_CP009360.2\|WP_095764008.1\|347861_349145_+\|aminotransferase	unknown	unknown	gnl\|CDD\|372371
NZ_CP009360.2\|WP_009974602.1\|353968_354406_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP009360.2\|WP_080691805.1\|340681_342010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_033719314.1\|342395_343778_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NZ_CP009360.2\|WP_003877008.1\|358475_359465_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|180377

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_011723522.1\|352495_353920_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.94174e-39
NZ_CP009360.2\|WP_009974602.1\|353968_354406_+\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	4.93318e-10
NZ_CP009360.2\|WP_003873365.1\|355650_356262_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	4.72191e-112
NZ_CP009360.2\|WP_023873928.1\|356276_356984_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	2.71152e-113
NZ_CP009360.2\|WP_033719184.1\|346569_347394_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000168517
NZ_CP009360.2\|WP_003877009.1\|351188_352451_-\|SAM-dependent-methyltransferase	gnl\|CDD\|367049	pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.	2.16324e-127
NZ_CP009360.2\|WP_003873367.1\|354402_355140_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|223929	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	1.94179e-43
NZ_CP009360.2\|WP_033719182.1\|349350_351177_+\|DNA-polymerase-III-subunit-gamma-and-tau	gnl\|CDD\|237866	PRK14952, PRK14952, DNA polymerase III subunits gamma/tau.	0
NZ_CP009360.2\|WP_080691804.1\|355274_355625_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.11893e-39
NZ_CP009360.2\|WP_003873376.1\|345560_346052_-\|hypothetical-protein	gnl\|CDD\|368465	pfam05481, Myco_19_kDa, Mycobacterium 19 kDa lipoprotein antigen. Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes.	8.32813e-23
NZ_CP009360.2\|WP_033719180.1\|356976_358227_-\|DUF1727-domain-containing-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	4.42831e-76
NZ_CP009360.2\|WP_023869922.1\|338442_339510_-\|dihydrodipicolinate-reductase	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	1.25407e-57
NZ_CP009360.2\|WP_095764008.1\|347861_349145_+\|aminotransferase	gnl\|CDD\|372371	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase. These proteins catalyze the reversible transfer of an amino group from the amino acid substrate to an acceptor alpha-keto acid. They require pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze this reaction. Trans-amination reactions are of central importance in amino acid metabolism and in links to carbohydrate and fat metabolism. This class of aminotransferases acts as dimers in a head-to-tail configuration.	0
NZ_CP009360.2\|WP_033719314.1\|342395_343778_-\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.17285e-05
NZ_CP009360.2\|WP_003877008.1\|358475_359465_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|180377	PRK06063, PRK06063, DEDDh family exonuclease.	0

>NZ_CP009360.2|WP_095764008.1|347861_349145_+|aminotransferase
MSLESLTPAELADVHARHQQGYADLQAKKLSLDLTRGKPAPAQLDLSNALLSLPGDDYRDSEGTDTRNYGGLHGLPELRAIFGELLGIPVQNLIAGNNSSLELMHDLVAFSMLYGGVDSQRPWKDEPSVKFLCPVPGYDRHFAITETMGIEMIPVPMLSDGPDVGLIEELVAADPAIKGMWTVPVFGNPTGVTYSWDTVLRLVQMRTAAPDFRLFWDNAYAVHTLTHDFIRQVDVLGLAAAAGNPNRPYVFASTSKITFAGAGVSFFGGSLGNIAWYLQYAGKKSIGPDKVNQLRHLRFFRDADGVRLHMLRHQQILAPKFALALEILDQRLSDSKIASWTEPKGGYFISLDVLPGTAKRTVALAKDAGIAVTEAGASFPYRKDPNDTNIRIAPTFPSLPDLRDAVDGLATCALLAASESLLARDRV
>NZ_CP009360.2|WP_033719184.1|346569_347394_-|hypothetical-protein
MGRKVAIPWHASFSIAAGVLYFFFVLPRWPELMGDTTHSLGTALRIVAGVLVALAALPVVFTLLRTRKPELGTPQLALSLRVASIVAHVLAGLLIIGTAVSEIWLSLDAAGRWLFGIYGAAAAIALLGIFAFYLSFVAELPPPPPKPIKAKKPKKRRLRRKKAGEEVETAETAEAEEAEAEEADETEAAQTVTAETEAAEATEAAEDTAEAEKPAATEPEAETPVAEDSDESRAKLRNRRPTGKGTHRMRRRRTRAGVAVDQTAEQSGDDADED
>NZ_CP009360.2|WP_003873375.1|346195_346573_+|hypothetical-protein
MLSVKWLEAPEAHDFPAAADYLSMLADAQTVKKVIKKLKRATVMQRKAKDILRAARLDLLPVDNPHVAADLTKIEKGLPLSPILLVRGDFLAGVPLQIADGYHRVCASYHTDENTPIPVLLAVAR
>NZ_CP009360.2|WP_003873376.1|345560_346052_-|hypothetical-protein
MKRLLAAATGTLGCAAAAVTLVGCSSGGHSAAPASSTAPSASTGTNAQVKVGGADLPGVNPASVTCVRTGGKIDIGSGSTGGAQQALAVVLTDEATPKVESLALVVDGNALAVSNNMGAKVGSADVAVDGKTYTITGQAQGADMKNPMAGMITKDFSIKVSCG
>NZ_CP009360.2|WP_033719185.1|343774_345463_-|hypothetical-protein
MSIPDGLQRARRMALAADEAGARHLLLSLIPRIERDDRDDLMLEVLAQLGEIYLARGADDGVEESIRRIQDCLAAYASMPADAENARMICRYSRRARFLQTGLAAARGDHEGAAAALDLLSDTGGEFPELAAEHAQLCARARVLCATALCDDDLHVQSVPLWDKILEHIGDSGGDDENADHLWVTAATGYGRFCVETGRLAEAEPWLRRAEARADAHGWELARARAQLERATARWAANDHAGTEQLVSQAYPVIARHARAHDVARCWLYLGLTRLGSGALEAADECWEHAERHWRELGKPLHLHRILLQRSWIAIFWSRFADAVELIAQARELLDSSPRSSWLQYAQLDSHLGTVWRADALADLGFDSSGDPEESLQETEARQAEGLGILRGEVGTPEYRRGMSKLQQAAELKVPAALAVDSVRYSIADADARARWATTIAAPILAGAFAVAWEWENTALISELVEYHSARGTFEALQRPQTGEWASTAVASVSLDTGAEPAALAAAGPPVAGGVSLTRLGPLPPLRMHPGEAPILDHYRTLAVQRYGRAVTADEPAWSTWP
>NZ_CP009360.2|WP_033719314.1|342395_343778_-|CHAT-domain-containing-protein
MTESGRLTLVLRYADLGIATYASLQIVGQPERTVAWVVEEPLLLAALQELAAALPEPHDAENRRAAIGRALSTGAFAAPDTELTLAYILGVLLIGSAGWQLLTECVSSPRAVLFVSPSARLARVPWGLLAIPKSGPSKEELVRARQDAITAAGRAAAQIPWRLGDLAALTDGHRLMELVEVLMAVPPNIVHAPRTATEWDARRDGPPLLVLDPRVPGQRPDSALGSVLGRPSPDTPVGRHFAELMRRRPVLPRVDAVVDLFRRRDADRRWLAGLLARSPCRLLYVGHASSADDDHRHGGRADRAALHLADPAAVPGDANAIGDHRPLTASDLMALRLPMPPRVALLACGSGGDYQFDEATGLVAAMILNGAQLVTATLWSLPTTAAYRQFAMPARGSPESVDPMADLVSAVDTAHDAPADAGCALNRWQRAQMRRWRDGDRVASPLYWAALATFTVDGAR
>NZ_CP009360.2|WP_023869927.1|342054_342393_+|hypothetical-protein
MGSVADRPRHPERMNTLLRLADWLKSRRRRDVGNRTVGVGTVRKVRRQVFIEVVAVSGETFIGKLARCDADLDLSVLRPGLVVLVAFDPAAREELSLPDDVLAVHAAWVAAL
>NZ_CP009360.2|WP_080691805.1|340681_342010_-|hypothetical-protein
MSAEPQPRTVPAGAAAGHPRRSVIEAAWRAIGPGVEVLSAEDGGPLSRTIKRIIDPLVLRLRSNPAYSAPVVTPETAAAMHELIVGSGPELRAAAAWFEALKLERRRQRIRTGNAQELYFPVCFELAVTKGAPAPHDNETAAAVLADIHRDRDRTAIEVLHRYAGNPDVVAALADQLQRSWRDVRAGPVDTGPFLAELATVLGMAGGHRGAAARQRVWSAMITDATPYNLGALAHIDCASLPWSIVEVGLTSVEPQRIPEVAAASEGERPLDRSVLDRVRATLRRALDRDALPDIPLLCEEEVDRACAPWGLLAEDKQATLVAGIEVAVQLAPLDPSACCRDDLAAQIQARLRKEAYVLHARRYLAANGPIHPRQQQVVDDLAAFAQPYLNRLWARLHGRDVWQEPCDDVDDVRALLDGVARSVSLDHRQRIKAMLELQVAG
>NZ_CP009360.2|WP_033719186.1|339548_340685_-|hypothetical-protein
MRLVADSGLWTTGRADVTEEPPLVALLEVSGAVLSWTLDDPDDAPPRLTFTDVSRADWLWRVLGEAGHVALVSAVRDAAVPAGGIELAGVDVAPSALAPLRRLATGHWLRRWWPASRQDGIAGLDRALLDAELALLTAGAQHFFPDDTLDSDVAGLLAPHATALLGHLVSPDPRVADLVRASAGLADGIGVDAGRWPELLAALDDSSLVVAPPSDRRDDYALAAGAGAGPRAAAIARGVASVAWSGVPRGVFDAAEDTVGWSIRVDGSAVVAVVQADVIGPDPATGIAVRLRSAAVEGAGPLDAAGRATFPLTGARGALTESAAWGHDWSATEVHVGAAVSTESPHTRERVRRWARARLESPPRDAFLAERLAAESAY
>NZ_CP009360.2|WP_023869922.1|338442_339510_-|dihydrodipicolinate-reductase
MPNTYRVVQWNTGNVGKSSLKSIVTNPTLELVGCYAWSAEKVGRDAGELVGIPPLGVAATNDVDELLALKPDCVVYNPMWIDVDELVRILSAGVNVVTTASFITGGNLGDGRDRILHACQQGGATIFGSGVSPGFAELLAIVSAMVCNRIDKVTVNEAADTTFYDSPETEKPVGFGQPIDHPDLPAMAAKGTAIFGEAVRLVGDALGVELDDVRCVAEFAQTTEDLVMASWTIPAGHVAGTYISWQGIVGDQVLIDLNVRWRKGQTLDPDWKIEQDGWVIQIDGQPTVTTKVGFLPPPYFEATTIEEFMDLGHIMTAMPAINAIPAVVAAAPGIASYADLPLTLPRGNAHVAGQP
>NZ_CP009360.2|WP_033719182.1|349350_351177_+|DNA-polymerase-III-subunit-gamma-and-tau
MALYRKYRPATFAEVAGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLNCVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGHVTYQRALGLLGATDLALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPDAASRGVVDAPEDVLERMRDQATRIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSASDTEAALLQRVERIETRLDMSIPAGSTPAEPVEQPVRFTRPSAAPKPASKPEPAAAKSEHEPEPQPEARPEPRPEPTPEPKPARASETPSAPGELNAAAVRSMWSTVRDKVRQRSRTTEVMLAGATVRAIEDNTLVLTHESAPLAKRLCEQRNADVIAEALKDALGVNWRVRCEAGSPAPATAGPPHPKPEQPVHEPDSARRDEEEHMLAEAVRDEPAARRDPEEAALELLQNELGARRIDGS
>NZ_CP009360.2|WP_003877009.1|351188_352451_-|SAM-dependent-methyltransferase
MAEILEVFAATGRHPLKFTAYDGSTAGSEDAELGLDLRSPRGATYLATAPGELGLARAYVAGDLQAYGVHPGDPYRLLKTLTDRVQFKRPPARVLANVVRSIGFERLLPVAPPPQETRPRWRRIADGLMHTKARDAEAIHHHYDVSNRFYELVLGPSMTYTCAVYPHPDATLEEAQENKYRLIFDKLRLAPGDRLLDVGCGWGGMVRYAARRGVRAIGATLSAEQAKWAQRRIDDEGLGDLAQVRHSDYRDVAETGFDAVSSIGLTEHIGVKNYPAYFGFLKSKLRTGGLLLNHCITRHDNTSTSFAGGFTDRYVFPDGELTGSGRITCAIQDVGFEVLHGENFRHHYAMTLRDWCRNLVEHWDAAVDEVGLPTAKVWGLYMAASRVAFEQNNLQLHHVLAANVDARGDDDLPLRPWWSP
>NZ_CP009360.2|WP_011723522.1|352495_353920_-|FAD-binding-oxidoreductase
MHGLLSKTRVYLVPVLGSALSAHQAGVDRLLESYRSIPATSAVRLAKPSSNLFRARTKRDAPGLDTSGLTGVLGVDPETRTADVAGMCTYEDLVAATLPYGLSPLVVPQLKTITLGGAVSGLGIESASFRNGLPHESVLEMDILTGAGELLTASRTQHADLFRAFPNSYGTLGYSTRLRIELEPVAPFVTLRHIRFHALADLIAAAERIIDTGGHAGTPVDYLDGVVFSADESYLCVGRRTTTPGPVSDYTGQHIYYQSIRHDSPGDEPTKDDRLTMHDYFWRWDTDWFWCSRAFGVQNPRVRRWWPRRYRRSSVYSKLVSLDRRLRISDRIEARNGRPPRERVVQDVELPVERTLEFLEWFLETVPITPIWLCPLRLRDHDGWPLYPMRPDHTYVNVGFWSSVPAGATEGATNRLIEAKVSELDGHKSLYSDSFYTREEFDELYGGEAYNTVKKTYDPDSRLLDLYAKAVQRR
>NZ_CP009360.2|WP_009974602.1|353968_354406_+|SRPBCC-family-protein
MGQVSADSTILINADPAATLAAVADYQTVRPKILSPQYSDYQVLQGGQGAGTVAKWKLQATKSRVRDVQVDVDVAGHTVIEKDANSSMVTNWTVAPAGPGSSVTVKTTWTGAGGVKGFFEKTFAPLGLKKIQGEVLANLKRELES
>NZ_CP009360.2|WP_003873367.1|354402_355140_-|N-acetylmuramoyl-L-alanine-amidase
MAVGALVAASTAIIPTAAPAAWGVPSNIAGMVVFIDPGHNGSNDASINRQVPTGRGGTKDCQASGTATNTGYQEHTFTWDTALRVRAELTALGVRTALARANDTGLGPCVDERANMANALHPNAILSIHADGGPPSGRGFHVNYSAPPLNQVQAGPSVQYARIMRDQMQASGIPPANYIGQNGLYGRSDLTGLNLAQYPSILVECGNMKNPADSALMESAEGRQKYADAMVRGVAGFLGSQGQAR
>NZ_CP009360.2|WP_080691804.1|355274_355625_+|YbaB/EbfC-family-nucleoid-associated-protein
MQPGPGGDMSALLAQAQQMQQKLMEAQQQLANAEVHGQAGGGLVKVVVKGSGEVVAVKIDPSVVDPSDVATLQDLVVGAMADASKQVTRMAQERLGSLAGGFGASPGQPPAPAPGV
>NZ_CP009360.2|WP_003873365.1|355650_356262_+|recombination-protein-RecR
MFEGPVQDLIDELGKLPGIGPKSAQRIAFHLLSVEPPDIDRLTAVLARVRDGVRFCAVCGNVSDDERCRICSDPRRDASVVCVVEEPKDVQAVERTREFRGRYHVLGGALDPLSGVGPDQLRIRELLSRIGERVDDVDITEVIIATDPNTEGEATATYLVRMLRDIPGLTVTRIASGLPMGGDLEFADELTLGRALAGRRAMV
>NZ_CP009360.2|WP_023873928.1|356276_356984_-|glutamine-amidotransferase
MADSVVRIGLVLPDVMGTYGDGGNALVLRQRLRLRGIDAEIVELTLADPVPESLDLYTLGGAEDYAQRLATRHLLRYPGLQRAAERGAPVLAICAAVQVLGHWYETSAGERVDGVGMLDATTSPQDARHIGELVTKPLLAGLTEPLTGFENHRGGTVLGPAAAPLGAVVKGAGNRAGDGFDGVVQGSVVATYMHGPCLARNPQLADLLLGKVVGGLPELPMPEVELLRRERLAAR
>NZ_CP009360.2|WP_033719180.1|356976_358227_-|DUF1727-domain-containing-protein
MLTTRARLALAAGASARWASRVTGRGAGAMIGGLVAMTLDRSVLRQLATGRRTVVVTGTNGKSTTTRMTAAALATMGSVATNAEGANMDAGLVAALAANRGARLAALEVDEMHVPHVSDAVRPGVVVLLNLSRDQLDRVGEINVIERTLRAGLARHPDAVVVANCDDVLMTSAAYDSPNVVWVAAGGSWANDSVSCPRSGEVIVREQGHWYSTGADFKRPSPHWWFDPQDGGNLYGPGGLALPMRLALPGAVNRGNAAQAVAAAVALGADPAAAVTAVSTVDEVAGRYRTVRVGGQDVRMLLAKNPAGWQEALSMVDPHADGVVISVNGRVPDGEDLSWLWDVRFEHFNDALQTTPVVAAGERGTDLAVRLGYAGVEHTLVHDTVAAIESCPPGRVEVVANYTAFLALQRALARHG
>NZ_CP009360.2|WP_003877008.1|358475_359465_+|DNA-polymerase-III-subunit-epsilon
MSAVCWGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPTHVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELARRLDLGIDNLRLETLAAHWGVTQQRPHDAFDDAMVLTGVLASALQRARERDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVERTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVPVISDAQFLDCVRAVIGGTSMDEFTDATPDPQLALF

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Crispr_ID: NZ_CP009360_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_3

1171959-1172202

Orphan

Consensus_repeat	Method
GCGGCGGGTGCCGGAGCGGACGGCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP009360_3

>merge|NZ_CP009360|3|1171959-1172202|CRISPRCasFinder
GCCGCGGGGGCCGGCGCGGCGTCGGGTGCGCCCGGGGTTGCCGGGGCCGCGGCGGCCGGCGCCGGTGGCGGCGGAACCGGTGCGGCGGCCGGGACGGTGGCCGGCTGAACCGGCCCGGGCGCGGGAGCCGCGGCGGGTGCCGGAGCGGACGGCGGGGTGGCGGCGGGTGCCGGAGCCGACGGCGGGGTGGCGGCGGGTGCCGGAGCCGACGGCGCAGCGGCGGCGGGTGCCGGGCCGGCCGCGT

>NZ_CP009360|3|3|1171959-1172202|CRISPRCasFinder
GCCGCGGGGGCCGGCGCGGCGTCGG	GTGCGCCCGGGGTTGCCGGG
GCCGCGGCGGCCGGCGCCGGTGGCG	GCGGAACCGGTGCGGCGGCCGGGACGGTGGCCGGCTGAACCGGCCCG
GGCGCGGGAGCCGCGGCGGGTGCCG	GAGCGGACGGCGGGGTG
GCGGCGGGTGCCGGAGCCGACGGCG	GGGTGGCGGCGGGTGCCGGAGCCGACGGCGCAGCG
GCGGCGGGTGCCGGGCCGGCCGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_003875444.1\|1169826_1170270_+\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_CP009360.2\|WP_023868544.1\|1173521_1174835_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|172015
NZ_CP009360.2\|WP_044543576.1\|1183058_1183790_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP009360.2\|WP_003878506.1\|1164557_1164680_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_031353928.1\|1176264_1176657_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP009360.2\|WP_033726658.1\|1170328_1170553_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379949
NZ_CP009360.2\|WP_009975474.1\|1168811_1169177_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP009360.2\|WP_095785472.1\|1169228_1169828_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226319
NZ_CP009360.2\|WP_044543575.1\|1182382_1183066_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP009360.2\|WP_071321387.1\|1164992_1167335_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP009360.2\|WP_062888034.1\|1167417_1168053_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP009360.2\|WP_023868547.1\|1180769_1182386_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP009360.2\|WP_071321388.1\|1177075_1180768_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP009360.2\|WP_095884648.1\|1183952_1185851_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP009360.2\|WP_023861250.1\|1170714_1171290_+\|(Fe-S)-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|132296
NZ_CP009360.2\|WP_003878503.1\|1168060_1168774_-\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP009360.2\|WP_003875447.1\|1171318_1171465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_011724058.1\|1174907_1175192_-\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP009360.2\|WP_009975493.1\|1175321_1176095_-\|cell-division-protein-DivIVA	unknown	unknown	gnl\|CDD\|274008
NZ_CP009360.2\|WP_085979723.1\|1172685_1173276_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_003875444.1\|1169826_1170270_+\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	2.337e-41
NZ_CP009360.2\|WP_023868544.1\|1173521_1174835_+\|DUF2029-domain-containing-protein	gnl\|CDD\|172015	PRK13375, pimE, mannosyltransferase; Provisional.	0
NZ_CP009360.2\|WP_044543576.1\|1183058_1183790_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	7.05622e-109
NZ_CP009360.2\|WP_095884648.1\|1183952_1185851_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP009360.2\|WP_031353928.1\|1176264_1176657_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.83493e-35
NZ_CP009360.2\|WP_033726658.1\|1170328_1170553_+\|hypothetical-protein	gnl\|CDD\|379949	pfam17227, DUF5302, Family of unknown function (DUF5302). Family of unknown function found in Actinobacteria with highly conserved motif of FRRKSG found at the C-terminus.	5.46631e-12
NZ_CP009360.2\|WP_009975474.1\|1168811_1169177_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	1.32989e-36
NZ_CP009360.2\|WP_095785472.1\|1169228_1169828_-\|DUF1697-domain-containing-protein	gnl\|CDD\|226319	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown].	4.11276e-58
NZ_CP009360.2\|WP_044543575.1\|1182382_1183066_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	1.61824e-55
NZ_CP009360.2\|WP_071321387.1\|1164992_1167335_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	2.99573e-128
NZ_CP009360.2\|WP_062888034.1\|1167417_1168053_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.76524e-15
NZ_CP009360.2\|WP_023868547.1\|1180769_1182386_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP009360.2\|WP_071321388.1\|1177075_1180768_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP009360.2\|WP_023861250.1\|1170714_1171290_+\|(Fe-S)-cluster-assembly-protein	gnl\|CDD\|132296	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730). [DNA metabolism, DNA replication, recombination, and repair].	1.75425e-105
NZ_CP009360.2\|WP_003878503.1\|1168060_1168774_-\|NAD-dependent-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	1.4435e-117
NZ_CP009360.2\|WP_011724058.1\|1174907_1175192_-\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	1.7316e-40
NZ_CP009360.2\|WP_009975493.1\|1175321_1176095_-\|cell-division-protein-DivIVA	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.53833e-06
NZ_CP009360.2\|WP_085979723.1\|1172685_1173276_-\|hypothetical-protein	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	1.456e-06

>NZ_CP009360.2|WP_003875447.1|1171318_1171465_+|hypothetical-protein
MKTHITCPCGEAIVGKDEDELVELTQAHLASVHPGLEYDRDAILFMAY
>NZ_CP009360.2|WP_023861250.1|1170714_1171290_+|(Fe-S)-cluster-assembly-protein
MPKLQLVQEPAADALLDENPFALLVGMLLDQQVPIETAFAGPKKIADRMGRLDAATIADYDPDKFAALCSERPAIHRFPGSMAKRIQALAQLLVDRYDGDAAALWTAGEPDGKELLRRLKGLPGFGEQKARIFLALLGKQYGVTPPGWREAAGEFGKAGTYLSVADIVDARSLGQVRSYKKQMKAAAKAAK
>NZ_CP009360.2|WP_033726658.1|1170328_1170553_+|hypothetical-protein
MAASSARQGSTSSKSSGGAGSSKSDDDTKRRFREALDRKMAKSTGGSDHKDGAGKQSRAHGPVESRREFRRKSG
>NZ_CP009360.2|WP_003875444.1|1169826_1170270_+|PPOX-class-F420-dependent-oxidoreductase
MGRQVFDDKLLAVISGNSLGVLATIKRDGRPQLSNVQYHFDPRSLVIQVSITEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAELTPPAAAPDDDTVQGLIALYRNIAGEHPDWDEYRQAMVTDRRVLLTLPISHVYGMPPGMR
>NZ_CP009360.2|WP_095785472.1|1169228_1169828_-|DUF1697-domain-containing-protein
MPKAYVARDRRPPMVVTGPSWWNRGMTEYAAFLRGVNVGGVNLKMADVKKALTDAGFTAVRTVLASGNVLLQSKAGAAAVRAKAEAALRERFGYDAWVLVYDLDTVRRVVDGYPFEREVDGYQSYVTFVADAAVLDELAALPAGPDERIRRGPDPLGVLYWQVPKGSTLDSTIGKTMGKPRYKSSTTTRNLRTLVKVLS
>NZ_CP009360.2|WP_009975474.1|1168811_1169177_+|GntR-family-transcriptional-regulator
MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARAYRELESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPDE
>NZ_CP009360.2|WP_003878503.1|1168060_1168774_-|NAD-dependent-deacylase
MRIAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWRDNPQRVWGWYLWRHYLVADVAPNAGHRAIAAWQDHAEVSVITQNVDDLHERAGSRPVHHLHGSLFEFRCARCAKPYTGELPAMAEPALEVQPPVCGCGGLIRPDIVWFGEQLPDEPWRRAVEATESADVMVVVGTSAIVYPAAGLAELALSRGAAVVEVNPEVTPLSASATLSIRETASQALPGLLQRLPALLN
>NZ_CP009360.2|WP_062888034.1|1167417_1168053_+|class-I-SAM-dependent-methyltransferase
MTTLVVDNPFFARIWPVVATHETAAVRALRRENVAGLTGRVLEVGAGIGTNFPLYPETVDEVIAVEPEPRLVDRARAAAQVVPVRVVVTGETAEAVGGDEPFDAVVCSLVLCSVRDPQNVLRRLYSLLRPGGQLRYLEHIASAGARGRFQRFVDATLWPRLFGNCHTHRDTERSIVEAGFDVDASRREWTLPAWSPMPVSELLLGRAHRPA
>NZ_CP009360.2|WP_071321387.1|1164992_1167335_+|MMPL-family-transporter
MLQKIARVAIAAPRRIIALGVLVFLAAAVFGIPVAKSLSPGGFQDPDSESARAIGVLTDKFGQSGQQMLILVTAPGGSDSDPARRVGTELVGQLQRSPLVYNVSSPWTAPPQASADLVSRDGKSGLIVVNLKGGENFVQNNAQTLADQFVHDRDGVTVRAGGAAMQYAQINTQNQADLLVMEMIALPLSFLVLIWVFGGLLAAALPMALGALAVVGSMSVLRLITFTTEVSIFALNLSTALGLALAIDYTLLIVSRYRDELAEGHDRDQALIRTMATSGRTVLFSAVTVALSMSATVAFPMYFLKSFAYAGVATVAFVATASIVITPAAIVLLGDRLDALDVRRLLRRALRRAQPVRKPVEQLFWYRSSKFVMRRWAPVGLIVVGLLLLLGLPFFSVKWGFPDDRVLPRSASAHQVGDRLRSDFAHDSATSVPVVIPDAAGLSPADLDDYAAALSRVPDVSAVSAPGGTFTGGTRVGPPAGATGLGDGSAFLTVSSTAPLFSTANDVQLKRLHEVPGPAGRSVEMGGVAQVNRDSVDAVTDRLPLVLGLMAAITFVLLFLLTGSVLLPAKALACNFLSLTAAFGALVWIFQDGHLGALGTTPSGTLVANMPVLLFCIAFGLSMDYEVFLLSRIREYWLASGAARPARPTPKRAHAANDESVALGVARTGRVITAAALVMSMSFAALIAAHVSFMRMFGLGLTLAVFADATLVRMVVVPAFMHVMGRWNWWAPKPLAWLHDRFGISEAADEEPRLAEPALGPVGPVGLPGGAVAEPVPNIG
>NZ_CP009360.2|WP_003878506.1|1164557_1164680_-|hypothetical-protein
MWIDDTSADVIKVDFEALYHGDVLVEGETSEQFDELQAAS
>NZ_CP009360.2|WP_085979723.1|1172685_1173276_-|hypothetical-protein
MPNIPQQLISSAANAPQILQNLATALGATPPAPPATPGISFPGVPAAGSPVTASSPAAVPSIPGLPQAAAPSAPSTATGGIPGMIQGLTGAQPSAAAPAAPASSSIPGLPAIPGLSAPAAPATPPAPQLPQAQVNMPAMPAGLPVSVPAQVTLPKDLPALASGQAPGAPAAPAAPAAPAPAASPAGPVAPLLAALP
>NZ_CP009360.2|WP_023868544.1|1173521_1174835_+|DUF2029-domain-containing-protein
MKTGHLGTEATAARAPIAKVGRIDTTSAAPAAPSTRRAADVLAVAAPLLLVASVAARLAWTYLVPNGANFVDLHVYLGGAAALDHPGTLYSYVYADQTPDFPLPFTYPPFAAIVFYPLHLLPFGLVALGWQLATIAALYGAVRISQRLLGVAAGAHGRRVAMVWTAVTIWIEPLRSTFDYGQVNVLLMTAVLWAVYSTRWWLSGLLVGLAAGIKLTPAVSGVYLAGARRWAATVFSAVIFLATIGISVLVVGDQTRYYFTELLGDAHRVGPIATSFNQSWRGGLSRILGHDVGFGPLLVAVVAGTAVLAVLAWRALDRSDRLGRLIVVEVFGLLLSPISWTHHWVWLVPLMIWAIHGPVRAWRGARLVGWGWLALTLIGVPWLLSFAQPNIWQIGRPWYLAWAGLVYIVAAVATLIWIAAAGRRAGHQVTAPSVTPA
>NZ_CP009360.2|WP_011724058.1|1174907_1175192_-|4a-hydroxytetrahydrobiopterin-dehydratase
MAVLTDEQIDAALPDLDGWERADGALRRSIKFPSFLDGIDAVRRVAEHAESKDHHPDIDIRWRTVTFALVTHSEGGITQNDVDMARDINGIVGS
>NZ_CP009360.2|WP_009975493.1|1175321_1176095_-|cell-division-protein-DivIVA
MITEPATAFSRVFRGYDPAAVDAYVEALLAKQKLLIDEVQNLRAQRNESGDQLAALRIEVACLKDEVAHLSDTSPTPYAIQHRMTKMLRRTLEEISRMQAEAQAEAESMIAAAAAQVEASHREHQELLADMAAQREALETEREEAKKDLEAELATMRAEAQAAIDEARQEAERECARLLAEAKQKADDLDERARRTVEEANQQRIMILEELMDVARDLQGLPASLESAYQERTSPSEASVVVPLDPKNQAPGPAVAS
>NZ_CP009360.2|WP_031353928.1|1176264_1176657_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MPTQIVVAGALIRGSRLLVAQRARPPELAGRWELPGGKVAPGETERDALARELAEELDLRVGDIAVGDRLGGDIAVDGGMTLRAYRVRLLRGRPEARDHRALRWITAAQLHDLDWVPADRGWLGDLARVL
>NZ_CP009360.2|WP_071321388.1|1177075_1180768_+|nitrate-reductase-subunit-alpha
MTATPHVGGVLEELLERSGRFFTPGEFSADLRTVTRQGGREADVFYRDRWSHDKVVRSTHGVNCTGSCSWKIYVKDGIITWETQQTDYPSVGPDRPEYEPRGCPRGASFSWYSYSPTRVRYPYARGVLVEMYREAKTRLGDPVLAWADIQADPERRRRYQRARGKGGLVRITWAEATELIAAAHVHTIKTYGPDRVAGFSPIPAMSMVSYTAGSRFFELIGAPMTSFYDWYADLPVASPQVFGDQTDVPESGDWWDAAYLMMWGSNVPITRTPDAHWMAEARYRGTKVVTVSPDYADNTKFADEWMPCAAGTDGALAMAMGHVILSECYVQKQVPFFTDYARRYTDLPFLIKLEERGDMLVPGKNLTAADLGEAVENAALKPALLDETTNSVAVPHGSLGFRYGESGVGKWNLDLGDLVPALSVRAAPTEDGETALVHLPSFDTVDGEGTTVARGVPVRRVGKHLVCTVFDLMLAQYGVARPGLPGQWPTGYDDATQQNTPAWQEAITGVSAAQAIRVAREFARSAEESGGRSMIIMGGGICHWFHSDAIYRAVLALLMLTGSMGRNGGGWAHYVGQEKVRPLTGFQTMAMATDWVRPPRQVPGASYWYAHTDQWRYDGYGADKLASPVGRGRFAGRHTMDLLASAVAMGWSPYYPQFDRSSLDVADEARTAGRDVAEYVAEQLGRRNLKLAVTDPDNPVNWPRVLTVWRANLIGSSGKGGEYFLRHLLGTDSNASAVPPEDGVRPVDVTCEGDIPEGKLDLMMSIDFRMTSTTLVSDVVLPAATWYEKADISSTDMHPYVHAFSAATDPPWETRSDFDAFGAIARAFSTMAKEHLGARTDVVLTALQHDTPDAMAYPDGAEHDWLRSRATPVPGRTMGKLTVVERDYAAVYDKWRTLGPLVDKFGLTTKGVTVHPFREVEELAARFGVLKSGVAAGRPAITTAARMADVLLLLSGTTNGRLAVEGFHELEKRTGQRLVHLAEGSEDKRISYADTQARPVPVVTSPEWSGSETGGRRYAPFTINIENLKPFHTLTGRMHFYLAHDWVEELGEHLPVFRPPLDMARLFGQPRLGACEDGIGLTVRYLTPHSKWSFHSTYQDNLYMLSLSRGGPTMWMSPGDAAKIQVRDNDWVEAVNANGIYVCRAIVSHRMPDGVVYVYHVQERTVDTPRSETNDKRGGNHNALTRVRIKPSHLAGGYAQHAFAFNYLGPTGNQRDEVTIVRRRSQEVVY
>NZ_CP009360.2|WP_023868547.1|1180769_1182386_+|nitrate-reductase-subunit-beta
MKVMAQLAMVMNLDKCIGCHTCSVTCKQAWTNRSGTEYVWFNNVETRPGQGYPRTYEDQERWRGGWIRDKRGRLRLRDGGRFQKLLRIFANPKLPVIGDYYEPWTYDYENLTTAPAGDTFPTAAPKSLISGEPMKVSWGPNWDDNLAGSPEILAEDPILKKVSEEVKLSLEQTFMFYLPRICEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYFNHKTGKAEKCTLCYPRMEVGLPTICSETCVGRLRYLGVVLYDMDRVLEAASVENDTDLYRAQCDILLDPNDTDVIAGARAQGIPDEWIEAAQRSPVYALIHTYRVALPLHPEYRTMPMVWYIPPLSPVVDAVSRDGHDGEDLGNLFGALDALRIPMQYLAELFTAGDTAVVEGVLRRLAAMRSYMRDINLGRETQPHIPHSVGMTEEQIYEMYRLLAIAKYEERYVIPTAFAPQARDLEQMGCSLTGDGGPGMYESEPVAVETFHALKQRGGPAEAEPGSTRPRVNLLNWDGGQVPAGMFPEAQRR
>NZ_CP009360.2|WP_044543575.1|1182382_1183066_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MRLLSALRERSSSRVMQDRLVWQAASLLLAYPDDGFGGRLDTVEELLGHVSGPAGTLLGQTAAALRGREPMAAAMDYVATFDMRRRATMYLTYWTAGDTRNRGREMLAFATAYREAGVQPPSNEAPDHLTVVLEFAATVDPDAGRRLLIAHRVPIEVLRCALADAKSPYEPAVAAVCQTLPAATDQEARRAERLARQLLEAGPPAEAVGLQPFTLTVPPRAEGTPGV
>NZ_CP009360.2|WP_044543576.1|1183058_1183790_+|respiratory-nitrate-reductase-subunit-gamma
MFSNVLFWDISPYVTLSVLIVGTWWRYRYDKFGWTSRSSQIYESRLLSIASPIFHFGILAVFAGHVMGLFIPPRVTHMLKMSDHLYHMQAVIAGSAAGFATLAGVGLLIYRRFTRPAVSAATTRSDKVMYMVLVLAIVVGLYCDLIGTGPHGGEFHYRYTVGLWFRRIWILQPHGEVMVNAPLDYQLHALIGMVLFTLWPFTRLVHVFSAPVVYLFRPYIVYRSREVAAKDQLVGTAPRRRGW
>NZ_CP009360.2|WP_095884648.1|1183952_1185851_+|translational-GTPase-TypA
MSDVPFRNVAIVAHVDHGKTTLVDAMLRQSGALHHRGDDTQERILDSGDLEKEKGITILAKNTAVHRHHPDGSVTVINVIDTPGHADFGGEVERGLSMVDGVLLLVDASEGPLPQTRFVLRKALAAHLPVILVVNKTDRPDARIAEVVEASHDLLLDVASDLDDEAAKAAEHALGLPTLYASGRAGVASTEQPADGEVPAGANLDPLFDVLLEHIPAPSGDPEAPLQALVTNLDASTFLGRLALIRIYNGKLRKGQQVAWMREVDGLPVITSAKITELLATEGVERSPTDEAIAGDIVAVAGLPEIMIGDTLADPDHAHALPRITVDEPAISVTIGTNTSPLAGKVPGHKLTARLVRNRLDQELVGNVSIRVVDIGRPDAWEVQGRGELALAVLVEQMRREGFELTVGKPQVVTRTIDGQLHEPFEAMTIDCPEEFVGAITQLMAARKGRMEEMTNHAAGWVRMDFIVPSRGLIGFRTDFLTITRGTGIANAVFDGYRPWAGEIRARHTGSLVSDRAGTITPFAMIQLADRGQFFVEPGQDTYEGMVVGINPRAEDLDINVTREKKLTNMRSSTADVIETLAKPLELDLEQAMEFCAADECVEVTPEIVRVRKVELDATSRARSRARAKARG

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Crispr_ID: NZ_CP009360_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_4

1213788-1213865

Orphan

Consensus_repeat	Method
TGGCCGCCGGCGCGGCGGCCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_4

>merge|NZ_CP009360|4|1213788-1213865|CRISPRCasFinder
TGGCCGCCGGCGCGGCGGCCGCCATCACCCGCGGCGCCGGTTCGGTGTGCGGCGTGGCCGCCAGCGCGGCGGCCGCCA

>NZ_CP009360|4|4|1213788-1213865|CRISPRCasFinder
TGGCCGCCGGCGCGGCGGCCGCCA	TCACCCGCGGCGCCGGTTCGGTGTGCGGCG
TGGCCGCCAGCGCGGCGGCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_023868553.1\|1204818_1205064_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_033726683.1\|1224610_1225807_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP009360.2\|WP_003875476.1\|1208545_1209238_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP009360.2\|WP_023868557.1\|1209234_1210494_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235227
NZ_CP009360.2\|WP_009975529.1\|1216382_1218023_+\|1-pyrroline-5-carboxylate-dehydrogenase	unknown	unknown	gnl\|CDD\|273517
NZ_CP009360.2\|WP_023868563.1\|1219077_1219680_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009360.2\|WP_023868564.1\|1220866_1221328_-\|acyl-dehydratase	unknown	unknown	gnl\|CDD\|239539
NZ_CP009360.2\|WP_044543582.1\|1205419_1206472_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP009360.2\|WP_044543583.1\|1214705_1216298_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP009360.2\|WP_023868558.1\|1210833_1212573_-\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|235624
NZ_CP009360.2\|WP_023868565.1\|1221324_1222446_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP009360.2\|WP_003875478.1\|1210490_1210823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234904
NZ_CP009360.2\|WP_023868566.1\|1222453_1222858_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP009360.2\|WP_044543581.1\|1198459_1204822_+\|KR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225858
NZ_CP009360.2\|WP_023868556.1\|1206546_1207734_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP009360.2\|WP_003875473.1\|1205219_1205423_+\|antitoxin-VapB	unknown	unknown	gnl\|CDD\|378324
NZ_CP009360.2\|WP_023868567.1\|1222857_1223403_-\|dehydratase-MaoC	unknown	unknown	gnl\|CDD\|379194
NZ_CP009360.2\|WP_044543580.1\|1195803_1198188_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009360.2\|WP_011724076.1\|1219700_1220870_-\|lipid-transfer-protein	unknown	unknown	gnl\|CDD\|181147
NZ_CP009360.2\|WP_023868562.1\|1218022_1218985_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|223580

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_023868566.1\|1222453_1222858_-\|hypothetical-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	2.913e-29
NZ_CP009360.2\|WP_033726683.1\|1224610_1225807_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	6.37232e-104
NZ_CP009360.2\|WP_003875476.1\|1208545_1209238_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.6653e-111
NZ_CP009360.2\|WP_023868557.1\|1209234_1210494_+\|sulfate-adenylyltransferase	gnl\|CDD\|235227	PRK04149, sat, sulfate adenylyltransferase; Reviewed.	0
NZ_CP009360.2\|WP_011724076.1\|1219700_1220870_-\|lipid-transfer-protein	gnl\|CDD\|181147	PRK07855, PRK07855, lipid-transfer protein; Provisional.	0
NZ_CP009360.2\|WP_023868563.1\|1219077_1219680_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.95686e-14
NZ_CP009360.2\|WP_023868564.1\|1220866_1221328_-\|acyl-dehydratase	gnl\|CDD\|239539	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.	2.86869e-50
NZ_CP009360.2\|WP_044543582.1\|1205419_1206472_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	6.14943e-55
NZ_CP009360.2\|WP_044543581.1\|1198459_1204822_+\|KR-domain-containing-protein	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP009360.2\|WP_044543583.1\|1214705_1216298_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.30877e-33
NZ_CP009360.2\|WP_023868558.1\|1210833_1212573_-\|acyl-CoA-synthetase	gnl\|CDD\|235624	PRK05850, PRK05850, acyl-CoA synthetase; Validated.	0
NZ_CP009360.2\|WP_023868565.1\|1221324_1222446_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	6.75645e-57
NZ_CP009360.2\|WP_003875478.1\|1210490_1210823_+\|hypothetical-protein	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0.00254532
NZ_CP009360.2\|WP_009975529.1\|1216382_1218023_+\|1-pyrroline-5-carboxylate-dehydrogenase	gnl\|CDD\|273517	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate. [Energy metabolism, Amino acids and amines].	0
NZ_CP009360.2\|WP_023868556.1\|1206546_1207734_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.1336e-51
NZ_CP009360.2\|WP_003875473.1\|1205219_1205423_+\|antitoxin-VapB	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	1.56358e-07
NZ_CP009360.2\|WP_023868567.1\|1222857_1223403_-\|dehydratase-MaoC	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	7.79728e-14
NZ_CP009360.2\|WP_044543580.1\|1195803_1198188_+\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.11988e-28
NZ_CP009360.2\|WP_023868562.1\|1218022_1218985_+\|proline-dehydrogenase	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	2.48677e-65

>NZ_CP009360.2|WP_023868558.1|1210833_1212573_-|acyl-CoA-synthetase
MHGSSVVSLLRERAGLQPDDVAFRYTDYEQDWAGVAETLTWAQLYQRTLNLAREVARHGDTGDRAVILAPQGLSYIVAFLAAIQAGLIAVPLSVPQPGSHDERVSAVLADTGPAVVLTTAAAAATVTEYLRRPDTGPAPAVVEIDSLDLDEPNSSSIRISGAPDIAYLQYTSGSTRLPAGVMVSHRNLQVNFQQLMAAFFPDFDGVAPRDTVCVSWLPFYHDMGLVQGVIAPILGGYAADLTSPVAFLQRPARWIQAMSRADPVFSAAPNFAFELAVRKTTDADLAGVDLGNIISIVSGAERIHPATLRRFCKRFAPYNFRADMMQPSYGLAEATVYVASRAEAGAPEVVHFEPEKLSAGSAQRCPAQTGSALLSYGAPTSPTVRIVDPDTNTECADGTVGEIWVNGENVAQGYWRKPEETRRTFGGVLVNPSPGTPRQPWLRTGDLGFISAGELFIVGRMKDLLIVYGRNHYPEDIESTVQAVTGGRVAAISVPADETEKLVTIIELKRRGDSDEYARRKLDAVKNEVTAAISNAHGLNVADLVPVAPGSIPTTTSGKIRRAACVERYLRGAFIRLDG
>NZ_CP009360.2|WP_003875478.1|1210490_1210823_+|hypothetical-protein
MSSDHDNNGKAIKINVWINEERLEALANAGMAELANEAFAGMKLLEIHTTEEQKNIVLQRFPGAKYDSSTTRSIELLPKQAKDRLLELSIAMHSTGPDVMGRFLEETEPA
>NZ_CP009360.2|WP_023868557.1|1209234_1210494_+|sulfate-adenylyltransferase
MNYTGHNGKPLVERVSTENAAARIEGLPRVPISKATAHEVISLSYGFFTPLTGFMGRREVDATLDEFALPDSTLWSIPIVFDMSADDIAERDVKEGASVVLDYLGVPMAILDVTEIYEYDLERMAEKTYGTTDPRHPGVKKTLGYHNRFIGGDITLINEPVFNEPFKSFWLTPRQHQDALAAKHWHRVVAHQTRNVPHTGHEALMKQAWLAANEDQPVDSLNTGVLVNAIIGQKRVGDYIDEAILLAQNALRTSGYFRENVHMVSFTLWDMRYAGPREAIFHAILRTNLGCTHHMFGRDHAGVGDFYHPYDSQNILKQYRNQLGIKPVFLRENWYCPVCLEVTNSALCGHEARAQSFSGSLIRSILTDEVKPTQKVMRHEVFEVVMECAAKHGQGSPFVTEEYLANRLPVFTLNQLEGS
>NZ_CP009360.2|WP_003875476.1|1208545_1209238_+|adenylyl-sulfate-kinase
MSNNITWHEHKISRGEREQLNGHKGCVIWFTGLSGSGKSTVANVVEQKLYERGIRSYLLDGDNVRYGLNAGPDLLEERHGPEFAQRFGLGFSAQDREENIRRIGAVAKLFCEAGIIALTAFISPYVRDRDAIRATLDDGDFQEIFIDTPIEICEKRDPKGLYKKARAGEIKGFTGIDDPYEAPPRPELRLDGAAKDAETLAEEVIAHLERVGVIATDGLAHTRGRDEVTA
>NZ_CP009360.2|WP_023868556.1|1206546_1207734_-|PPE-family-protein
MLDYGALPPEINSTRMDAGPGSAPLIAAAAAWDVLANALETAARGYSAVITRLHGESWSGSASVAMAGAAAPYFAWLAEAGTQAEEAAGQARAAAAAYEAAFGATVPPAVVTANRALFAQLVASNILGQNTAAIGEAEGAYAEMWAQDAAAMYGYAAASSGATRLRPFDEPPRTTNADGPGAQAAAVARSATGSAANQSHASLSRAMSTVPHQLQTLSGAGSSGSSSSSSGSSALSAVDNFNTLTAPVNLGDGISRTVTSGGTFGTGLFRSNLQSAGEAFKAVPGAAAAAGTSTAAVVPGPAVAGAGTATTVGRLSVPQTWAATNPAAGTVAEPLWLSDAELDGGPSWHEGPAAGMWNGAPAAGASSSLLSRPSVNNVLRVAPRQFKMPRPSAGG
>NZ_CP009360.2|WP_044543582.1|1205419_1206472_-|PPE-family-protein
MLDFGALPPEINSARMYSGPGSGPLTAAAAAWEELAAQLESYAAGYSATLAELRGPAWSGDAAAAMAAAVEPYVAWATGTAARAGQAAAQARAAAAAHEAAFAATVPPHVVAANRIQLATLIATNFFGQNAPAIAATESCYAEMWAQDATAMYGYAAASSAATTLTPFTHPPRTTTAYGQAAQAAAVSHAADSQPPGWSSLVNSVSGFNTVVTTPGQSFFAATRTLLGWGQFGTGLNLANIQAAKAAAGAVRLPAAAAGPSVSGGLGRAATVGRLSVPSAWRAANPVAPLGETVMRQPGGMVRLVSGSAPDSPAGPGIPPALRTADRSAGVPVLRNGRRAFRMPRPAYGG
>NZ_CP009360.2|WP_003875473.1|1205219_1205423_+|antitoxin-VapB
MKKTVEIEVDVNMIDDAIRRFHLADAREAVNLALRTLIDDAGPGHHDGEFGDLGPWRGPEDIATNTG
>NZ_CP009360.2|WP_023868553.1|1204818_1205064_-|hypothetical-protein
MAICDTCGNDYDKAFTVTWTDGRSATFDSVECAAVELAPTCEHCECRILGHGVESGGAMFCCAHCARQAGNHDVSGRGAAG
>NZ_CP009360.2|WP_044543581.1|1198459_1204822_+|KR-domain-containing-protein
MRAATATPVAVIGMACRLPGGIDSPQRLWEALLRGDDLVGEIPADRWDADLYYDPEPGVPGRSVTRWGAFLDDVGGFDCDFFGMTEREATAVDPQHRLLLETSWDAIEHAGLDPASLAGSQTGVFVGLTHGDYELLSADCGAAEGPYGFTGTSNSFASGRVAYTLGLHGPAVTVDTACSSGLMAVHQACGSLGGGESDLTLAGGVVVTLEPRKSVSGSLQGMLSPTGRCHAFDVNADGFVSGEGCVMLLLKRLDDARRDGDRILAVLRGTAANQDGRTVNIAAPSETAQVAVYRKALQAADIDATTVGLVEAHGTGTPVGDPIEYSSLAAVYGTDGPCVLGSVKTNFGHLQSASGPLGMMKAILALQHGVVPRNLHFTRLPDEMARINTELFVPQENTPWPSNGHHPRRAAVSSYGMSGTNVHAILEEAPAPAAAGSAAPEVVGPLLFPLSSTSAEQLRVTAARLAAWLDEQAGDALAGPTGWGLRDLGYTLTRRRAHRPVRTVVSASGLAELRTELRAVAGGDIPYQPAVGQGDRGPVWVFSGQGSQWSQMGAELLDKEPMFAATIAAVEPLIAAESGFSVTRALSAPPAVTGIDKVQPTIFAMQVALAETMKCYGVRPGAVIGHSLGECAAAVVAGGLSLGDGVKVICRRSRLMARIAGRGAMASVELPGQQVLSELSIRGISDVVLSVVASPTSTVVGGDAEAIRELVAAWQQQDVMAREVAVDVASHSPQVESILDELVEVLAELEPTAPEVPYYSATLWNPRERPSFGGDYWAENLRHTVRFAAAVQAALKDGFRVFGELAPHPLLTHAVEQNAASLDVPIAALAAMRREQELPLGLRGFVGDLHSSGALVDFSVQYPAGRLVDAPLPTWAHRRLMLRRESVQRAHGSSVQAVHPLLGAHVHLREEPERHVWQGEVGTDAHPWLADHQIHGVAAFPGAGYCEMALAAAAATLGERAEVRDVTFEQTLLLAGRTEVSSTATVTGPGRLEFTVETHEDGERIRRAGAVLHALPPEHGGETGPPAHDVATLIADHPSRIEGAELRKAFGAVGIQYGPAFSGLAAVLVGDGDVGTVLAEVALPGAIRSQQSGYGAHPALLDACLQSVIAAPEVQRAGAGGLLLPVGVRRLRNYHSTRNAHYCLTRITSSRPGECEADVDVLDQSGTVLLTVEGLRLAGAASEHEHAQRLLDDRLLTIEWEARELPEAPQGEPGSWLLLSACDAASNGDDALTTQLADVLKTDGVQCRTVSLPPGAVDTEELRSLLSGGEPGGNGHRPLQRLTGVVVVAAASEADHPAALRRGRDYVSHLATVARELSELPGESPRLFVLTRNAAVVVAGDAPNLTQAGLRGLMRVIDAEHPHLSATQIDVDDATDPGHVARQLQSRSGEDETAWRDGQWYTARLRPGPLRPADRRTTVVDHGRDGMRLHIRTPGDLESLELTAFDRVPPGPGEIEVAIASSTINFADVLVAFGRYPTFEGYQQQLGGDFAGVVTAVGPGVTEHRVGDRVGGLSGNGCWGTFVLADARLAVTLPPEIPLRDAAAVPTASATAWYGLHDLARIAPTDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSPQRRQLLRDMGIEHVYDSRSLEFAEQIRRDTDGYGVDVVLNSLPGAAQRAGIELLALGGRFIELGKRDIYRDSRLGLFPFRRNLSLFAVDLALLTHSHPHTVRRLLTTVYQRTAAGELPMPRTTHYPLQDAAAAVRLVAAAGHTGKVVLQVPRTASSVAALPPEKVRPFRADGAYIITGGLGGLGLFLAGEMASRDGDVGAGRIVLNSRSQPGEQARRAIERLRAAGADIAVECGDIAEPDTAERLVTCATATGLPVRGVLHAAAVVEDATLTNVTDDLIDRCWAPKVYGAWNLHQATAGQPLEWFCLFSSAAALVGSPGQGAYAAANSWLDAFARWRHARGAPATAMAWGAWSQVGRATALAEDAGVAITPAEGFRAFETLLRHERPYAGYAPIMGTPWLTSFAQRSPFAEAFRSAGQGRPDAGKFLAELRALPREEWPSAIRQLVSGQLSLLLRRTIDPDRPLSDYGLDSLGNLELRTRIETETGVRISPATITTVRGLAEHLCDELADLPAAPPAGAPR
>NZ_CP009360.2|WP_044543580.1|1195803_1198188_+|amino-acid-permease
MTSSTGNLRIPLSFGDVAKRVFLGKPLITEDIASEKLSNGVALGALSPDAVSSVAYGPEQILIELLPHAGLAAFLLLLPITGVILLILVLVAASYRQVVMAYTRAGGSYIVARDNFGPRVAQIAAAALLIDYVVTVAVQSAAGTVAVVSAIPVLGPYSLAITVGVVLVICYANLRGLREAGMPFAVATYSFIVMVGLTIVIGVVRAVIGNLPIYDPAHLAGTVPVHQGNGLVLGATILVLLRAFANGGSSLTGVEAISNTVDYFRKPQGRNARRVLTAMASILGFLLAGVAYLAHVTHATPYLTEYPSVLSQIGHAVYGGGVVGDIFFVMVQASTAAILFTGANTSFNGFPALASFVAEDRFLPRQLTKRGHRLVFSNGIITLTALSVALLVATGGSVNALVPFYAIGVFTGFAMAGYGMTKHHLTHREAGWRHRLTINLSAAVLSTIVVGIFAVAKFTEGAWLVVVVFPLLVFVLTRLNREYRAEAAILEMFRTDRPELVKYARHKVLVFVDSVDLAVIEALRYGRGLRADELVAVHFMVDPAHAAQLRNRWDHFSLDTPLRIVDCPDRRISRSAQLMVVKVRDEHPNTNVTVLLPRRTFARLLGRLLHDRTADKVARAVSQIPDAAATIVPYDVESRIREAYPDTFEQRIAKELDKIQAWVSQDEDQKVAAYEHPARSSAVIMVAGLISGQRATIEGRVSEVEDVAERGGTRRRIVVGDSSGEITVIFHHGHGGADIQPGQLLRISGKARQAGQRELSMVDPAYEVIEDPAREAEESGDSEESGDSQRADKK
>NZ_CP009360.2|WP_044543583.1|1214705_1216298_-|PucR-family-transcriptional-regulator
MAGVGLGQLLLALDATMVSLVDAPRGLDQPVASAALIDSDDVRLGLAAAAGSADVFFLLGVGDDEALRWIDTQARDRVPVAVFVKEPSDTLVGTAVAAGSAVVAVDPRARWERLYQLVNHVLEHHGDRADAADDSGTDLFGLAQSLAERIHGMVSIENAQSQVLAYSASNDEADELRRLSILGRAGPPEHLEWIGQWGIFDALRSGTQVVRVAERPELGLRPRLAVGIHQPDPDARRPPVFAGTIWVQQGAQPLADDAEQILRGAAVLAARIMARLAARPSTQARRLQQLLGVTDSETLAPVDLTAIAAELGLAADGCAALVGWAAAEGASRHTRLTDVIALSASAFRHDAHVAGHGSRTYVLLPQPPNRSVSSWVRGTIAALRAELGVQLRAVIAAPVPGLSAVAAARAEVDRVLDSAERHPLSFGQVTSLAEARTTVLLDEIVTLVGRDERLVDPRIVALHDREPVLAQTLRTYLDAFGDIAAAAHALRVHPNTVRYRVRRIEKLLSVSLADPEVRLLFALALRVAER
>NZ_CP009360.2|WP_009975529.1|1216382_1218023_+|1-pyrroline-5-carboxylate-dehydrogenase
MDAITGISEVPVPANEPVHDYAPHSAERARLRAELAALAGHPIDLPHVIGGRHRMGDGERIDVVQPHRHAAKLGTLTNAVHADATAAVDAAMAAKSDWAAMPFDERAAVFLRAADLLAGPWREKIAAATMLGQSKSAYQAEIDSPCEQIDFWRFNVAFARQILAQQPISGPGEWNRSDYRPLDGFVYAITPFNFTSIAGNLPTAPALMGNTVVWKPSITQTLSAYLTMQLLEAAGLPPGVINLVTGDGFAVSDVALADRRLAGIHFTGSTATFQRLWYQVGTNIGHYHCYPRLVGETGGKDFIVAHASARPDVLRTALIRGAFDYQGQKCSAASRAFIAQSVWRRMGDEFLAETAALRYGDVTDLTNFGGALIDRRAFVKNVDAIERAKGAPHVTLAVGGEYDDSEGYFVRPTVLLSDDPADESFATEYFGPLLSVHVYPDDDYQRILDVVDTGSRYALTGAVIADDRAAVLAAQDRLRFAAGNFYVNDKPTGAVVGRQPFGGSRGSGTNDKAGSPLNLLRWTSARTIKETFVPATDHTYPHMGAD
>NZ_CP009360.2|WP_023868562.1|1218022_1218985_+|proline-dehydrogenase
MAGLFAHTLRPAILAAGRRPGLRRAAEALPVTRRVVHRFIAGETIDSALDSVTALRDSGRCVSVDHLGEDVSDADDADAAVRVYLELVDRLGCLGDGAAVRPLEVSLKLSALGQSLDRDGEKIARENAWAICAAAQRAGVWVTVDAEDHTTTDSTLRIVRDLRREFDWLGVALQAYLRRTLGDCEEFAAAGARVRLCKGAYDEPASLAYRDPAAVTDSYLRCLRVLMAGSGYPMVASHDPAIIEAAPSLARESGRGTGEFEYQMLYGVRDDEQRRLAEAGHTVRVYVPFGTQWYGYFMRRLAERPANLTFFLRALAARRH
>NZ_CP009360.2|WP_023868563.1|1219077_1219680_-|TetR/AcrR-family-transcriptional-regulator
MSTNVSPATDTRELIVAAAFTCFGRQGLQKATIVDIAKQAGVSRSTIYEYFSDKAAIVEACAEHASERFYREMAKAMNRGGTLEERLCAAAVFVTQARRVIASEKYFDEDAISLLLTKDAAVLLRECVEFFAPYLAAARLTGEVRKDLDVEAAGEWFARILFSLFSTPSPTLNLDDADVTAEFVRAHVVRGFAGERPRRR
>NZ_CP009360.2|WP_011724076.1|1219700_1220870_-|lipid-transfer-protein
MSSILPGAAAIVGIGQTEFSKESGRSELQLACEAVSAALDDAGLTPADVDGMVTFTMDSSDEIDIARNVGIGDLSFFSRVHHGGGAAAGTVVHAAMAVATGVADVVVCWRAFNERSGFRFGGSGRNMAETPLFMAHYAPFGLLTPAAWVALHAQRYMSTYGVTNEDFGRIAVVDRKHAATNPDAWFYQRPITLEDHQNSRWIVEPVLRLLDCCQESDGGVALVVTSVERARDLRRPPAVIAAAAQGAAADGEMMTSYYRDDITGLPEMGVVARQLWRDSGCKPQDIQTAFIYDHFTPFVFVQLEELGFCGRGEAKDFATVERLSLGGEFPINTNGGLLGEAYIHGMNGITEAVRQVRGTSHNQVADVEHVLVTSGTGVPTSGLILAPAG
>NZ_CP009360.2|WP_023868564.1|1220866_1221328_-|acyl-dehydratase
MTRTANHTLRWQDISVGEEVTPLEIPITTTMIVAGAIATRDFMPVHHDRDYAKKQGSPNLFMNILTTNGYCVRFLTDWAGPEAMVKKLSIRLGVPCFPDDPLRFTGSVTGKTRGPAGPPPAENFVEVTFKASNSLGDHVSGTAVLSLLDGAGS
>NZ_CP009360.2|WP_023868565.1|1221324_1222446_-|acyl-CoA-dehydrogenase
MDFSFTEEQETIGKLARDLFERRATPERLTELEAGDTRHDAALWEELAAADLLGAALPEAVGGSCASGGGFVELGVLLAEVGYGVAPVPAYATLVLGADSIARHGSSEQQQRVLPGVIAGSRILTAGLAEPGRSDPARPATTARRDGPNWRLDGAKELVPAAQLADTMLIPAVLDDGDVGLFLLAADAAGVEIRPVPTTNREPHADVFLDGARVSETDRIAGIGLVESLLTRALVALCAIQLGVVERALRIAAEYTAGREQFGRPIGSFQAVQQRMADAFIDVEAIRWTTWQAAWLVAHGRPADRAARIAKFWAAEAGARVAATAQHVHGGIGIDVTYPLHRYFLWAKHNELTLGPASAQLAHLGATYSEGHA
>NZ_CP009360.2|WP_023868566.1|1222453_1222858_-|hypothetical-protein
MAARLAPAITADTEFFWNGLRENKLLIQRCSGCGKLRHPPRPMCPHCRSLDWQAVESSGRGTVYSYVMPHEPKFPFFEYPYIVVLVELEEGVRLVSNLTGIDPAEVTPGLPVEVYYQTFDGSQELVLHQFRPSA
>NZ_CP009360.2|WP_023868567.1|1222857_1223403_-|dehydratase-MaoC
MTDSETVSAKVRALVGQPTGGTGKPSLAPDPVNQPMIRHWAYAMADMNPVYLDPEFAASSRFGGIVSPPVMLQTWTMPSPKLEGIGERGGAPVEIDSNPTAFLDEAGYTSTVATNSEFEIERYPKLGDVISATTVYESVSDEKKTALGTGFFLTWLTTYTDQNGEVLGRQRFRVLRFRPAG
>NZ_CP009360.2|WP_033726683.1|1224610_1225807_-|cytochrome-P450
MQTHPPLRSPSFPLHSPDFYAGNPYPAYRELRATAPVCWNDVTNFWALLKYEDIRFVSSNPALFTSTRGITIPDPQLPNPVQQGSLIFTDPPRHRQLRKLINSGFTRRRVSVLEPKIREIVRGILDGIERGAVHEFAEQIAAPLPTRMIAELIGAPPDDWEQFRAWSDAATGTADPEIELDPAVAAGQLYEYFQRLIAARRARPRADLLSVLAEAEIDEHRLTDEDLLNFAFLLLVAGNETTRNLIALGTLALIAHPDQYRLLVEEPARIPLAVEEMLRWNSPVVHMARTATADVEIRGQRVRAGEVVVMLYGSANRDEDVFGPDSEEFDVTRHPNPHIAFGCGEHSCVGAQLARLEATVFFEELLRRYPRIELVGEVDRMRATMVPGVKRMPVRMGA

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Crispr_ID: NZ_CP009360_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_5

1371180-1371255

Orphan

Consensus_repeat	Method
GCAGGAGGAGCGGCGCTGATGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_5

>merge|NZ_CP009360|5|1371180-1371255|CRISPRCasFinder
GCAGGAGGAGCGGCGCTGATGTCTCGCGTCGCGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCTGATGTCT

>NZ_CP009360|5|5|1371180-1371255|CRISPRCasFinder
GCAGGAGGAGCGGCGCTGATGTCT	CGCGTCGCGACGATGCAGAGCGCAGCGA
TGAGGAGGAGCGGCGCTGATGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_003877292.1\|1373374_1373857_+\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NZ_CP009360.2\|WP_003873223.1\|1375491_1376832_+\|ATP-synthase-subunit-b-delta	unknown	unknown	gnl\|CDD\|184048
NZ_CP009360.2\|WP_062888078.1\|1366912_1368775_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
NZ_CP009360.2\|WP_003873226.1\|1373849_1374608_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP009360.2\|WP_024636915.1\|1374692_1374941_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|180303
NZ_CP009360.2\|WP_062888076.1\|1361841_1363260_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP009360.2\|WP_003873231.1\|1369215_1370289_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP009360.2\|WP_003877295.1\|1376899_1378564_+\|ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP009360.2\|WP_033726727.1\|1374950_1375484_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP009360.2\|WP_003873228.1\|1371935_1373159_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP009360.2\|WP_019734134.1\|1359435_1359777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_044543606.1\|1364585_1365668_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_CP009360.2\|WP_010949610.1\|1365697_1366645_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|223161
NZ_CP009360.2\|WP_019734135.1\|1360192_1361845_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP009360.2\|WP_003873221.1\|1378570_1379485_+\|ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP009360.2\|WP_003873220.1\|1379513_1380971_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP009360.2\|WP_076221186.1\|1366614_1366920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_003873219.1\|1381010_1381376_+\|ATP-synthase-epsilon-chain	unknown	unknown	gnl\|CDD\|234796
NZ_CP009360.2\|WP_019734137.1\|1363263_1364589_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP009360.2\|WP_003873232.1\|1368876_1369119_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_003873223.1\|1375491_1376832_+\|ATP-synthase-subunit-b-delta	gnl\|CDD\|184048	PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.	0
NZ_CP009360.2\|WP_062888078.1\|1366912_1368775_+\|transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
NZ_CP009360.2\|WP_003873226.1\|1373849_1374608_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	3.09617e-62
NZ_CP009360.2\|WP_024636915.1\|1374692_1374941_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|180303	PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated.	2.15516e-33
NZ_CP009360.2\|WP_062888076.1\|1361841_1363260_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	6.82908e-178
NZ_CP009360.2\|WP_003873231.1\|1369215_1370289_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP009360.2\|WP_033726727.1\|1374950_1375484_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	3.28952e-44
NZ_CP009360.2\|WP_003877295.1\|1376899_1378564_+\|ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP009360.2\|WP_003873228.1\|1371935_1373159_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	7.47756e-78
NZ_CP009360.2\|WP_003877292.1\|1373374_1373857_+\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	1.08902e-06
NZ_CP009360.2\|WP_010949610.1\|1365697_1366645_+\|homoserine-kinase	gnl\|CDD\|223161	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism].	1.58615e-98
NZ_CP009360.2\|WP_044543606.1\|1364585_1365668_+\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_CP009360.2\|WP_019734135.1\|1360192_1361845_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP009360.2\|WP_003873221.1\|1378570_1379485_+\|ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	2.30959e-141
NZ_CP009360.2\|WP_003873220.1\|1379513_1380971_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP009360.2\|WP_003873219.1\|1381010_1381376_+\|ATP-synthase-epsilon-chain	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	1.19782e-38
NZ_CP009360.2\|WP_019734137.1\|1363263_1364589_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP009360.2\|WP_003873232.1\|1368876_1369119_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	3.16914e-41

>NZ_CP009360.2|WP_003873231.1|1369215_1370289_+|peptide-chain-release-factor-1
MTQPVQTIDVLLAEHADLERRLSDPDLHSNPDEARKAGRRFARLAPIVGTYRKLMAAREDLETARELAADDDSFTAEVADLESRVAQLDTQLTDMLAPRDPHDADDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWTVTVLDEITSDLGGYKDATLSIRSKGDSADGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVAEVQIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGVVVTCQNERSQLQNKARALQVLAARLQAMAEEQASAEASADRASQIRTVDRSERIRTYNFPENRITDHRIGFKAHNLDQVLDGDLDALFDALAAADKQSRLQQA
>NZ_CP009360.2|WP_003873232.1|1368876_1369119_+|50S-ribosomal-protein-L31
MKADIHPTYAETTVLCGCGNTFQTRSTKDGGRIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGKRKAGAEKAESADK
>NZ_CP009360.2|WP_062888078.1|1366912_1368775_+|transcription-termination-factor-Rho
MTDTDLFTAGENTDANQLSTAVTTDTPDAKTHAPVGALTTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGAAPAEQANGAEPAEDSGKPDAKDAKDDTTPDTKDANDHTGAQSAAEAPAPSEQNGATTEAPRRERRSASRDAGAAGRGNDDADRETDGREQSKQDSREQSKQDGGDQDQQSSGGQQGRGSNQQDDDGEGRQGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKDGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGAMDND
>NZ_CP009360.2|WP_076221186.1|1366614_1366920_+|hypothetical-protein
MEPGSHRRRLIHSVAGGFACFRQGWGLSSEPSSNRSICICIHTALPLGQHQFFLWTRFAVYSANPGDHRCKVDDWAHSAIWLNATNPLYELISGGRKEIRD
>NZ_CP009360.2|WP_010949610.1|1365697_1366645_+|homoserine-kinase
MVTSMLPAGLVASAVVSASSANLGPGFDSIGLALSLIDEITVETTDSGLVVQVEGEGADQVPLGPEHLVVRAVECGLRAVGVRAAGLVVRCRNAIPHSRGLGSSAAAVVGGLAAANGLVAQANCQPLSDAALIQLSSEFEGHPDNAAAAVFGGAIVSWIDRGGQHPRYAAAPLRLHPDIHLYCAIPQERSLTAETRVLLPAQVSHEDARFNVSRAALLVVALTERPDLLMAATEDVLHQPQRAPAMPASAEYLRLLRRHNVAATLSGAGPSLIALTTASALPPEVMEYGAANGFTLAEMTAGEGVRWSPGVTVVG
>NZ_CP009360.2|WP_044543606.1|1364585_1365668_+|threonine-synthase
MSAQRTAVHQPWPGLIEAYRDRLPVGDDWTPVTLLEGGTPLIAARRLSEKTGCTVHLKVEGLNPTGSFKDRGMTMAVTDALARGQQAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLGAAPDVHALPVGNAGNITAYWKGYTEYHHEGLIEKLPRMLGTQAAGAAPLVHGEPVKNPETIATAIRIGAPASWTAAVDAQQQSHGRFLAATDDEILAAYHLVAESEGVFVEPASAASIAGLLKAVEDGWVARGSTVVCTVTGNGLKDPDTALRDMPTVTPLPVDPVLVVEKLGLA
>NZ_CP009360.2|WP_019734137.1|1363263_1364589_+|homoserine-dehydrogenase
MPRDEKPVGVAVLGLGNVGSEVVRIIEDSAGDLAARIGAPLVLRGVGVRRVADDRGVPVELLTDDIEGLAARDDVDIVVELMGPVEPSRKAILCALEHGKSVVTANKALLSTSTGELAQAAESAHVDLYFEAAVAGAIPVIRPLTQSLAGDTVLRVAGIVNGTTNYILSAMDSTGADYDAALAEASDLGYAEADPTADVEGYDAAAKAAILASIAFHTRVTADDVYREGITKITPADFASARALGCTIKLLSICERITGDDGQERVSARVYPALVPLSHPLATVNGAFNAVVVEARASGRLMFYGQGAGGAPTASAVAGDLVMAARNRVLGSRGPRESKYAQLPVAPMGFISTRYYVSMNVADKPGVLSSVAAEFAKREVSIAEVRQEGVADEGGRRVGARIVVVTHTATDAALSETVHALADLDVVQSVTSVLRLEGTSL
>NZ_CP009360.2|WP_062888076.1|1361841_1363260_+|diaminopimelate-decarboxylase
MNVHPAGPRHAEETRHPESPPRPQSPEELLLLAPNVWPRNVTRNEAGVATIAGVAVTELAREYGTPLFVVDEDDFRSRCREIASAFGGGNNVHYAAKAFLCSEVARWIDEEGLSLDVCTGGELAVALHADFPPERITFHGNNKSVAELTAAVKAGVGHVVLDSMTEIERLDAIAADAGIVQDVFVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAALAAVGRVFDTEHLRLVGLHSHIGSQIFDVAGFELAARRVIGLLHDAVEQFGVEKTAQIATVDLGGGLGISYLAADDPPPMGELAGKLSAIVQHESAAVGLPTPRLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYDAQYDARLVSRVSDAPAELARIVGKHCESGDIVVRDTWVPGDLRPGDLIGVAATGAYCYSLSSRYNMVCRPAVVAVRDGRARLVLRRETVDDLLSLEVR
>NZ_CP009360.2|WP_019734135.1|1360192_1361845_+|arginine--tRNA-ligase
MTPADLAELLRNTAAAVLAERGLDAAALPATVVVERPRNPEHGDYASNLALQLGKKVGANPRELAGWLAAALAETDGIASAEVAGPGFINLRLEASAQAVVVTNVLDAGDRYGHSDAQSTHNINLEFVSANPTGPIHIGGTRWAAVGDALGRLLSTQGAGVVREYYFNDHGAQIDRFASSLIAAAKGEPTPEDGYAGSYINDIAAQVLRQAPDALSLPEPQLRETFRAIGVDLMFTHIKESLHEFGTDFDVYTHEDSMHTSGRVDQAIARLRETGNIYEKDGATWLRTSAFGDDKDRVVIKSDGKPAYIAGDIAYYLDKRQRGFDLCIYMLGADHHGYIARLKAVAAAFGDDPAAVEVLIGQMVNLVRDGQPVRMSKRAGTVITLDDLVEAIGVDAARYSLIRSSVDTPIDIDLALWSSASNENPVYYVQYAHARLSALARNAAELGLIPDTAHLELLSHDKEGTLLRTLGEFPRVLKTAASLREPHRVCRYLEDLAGDYHRFYDSCRVLPQGDEQPTDLHTARLALCQATRQVIANGLAILGVTAPERM
>NZ_CP009360.2|WP_019734134.1|1359435_1359777_-|hypothetical-protein
MAYADDPHEPFGLAVEIPAVEYGQPLPGTVRVAFYDFGGNMADIMEARSLVPVSERRLLPRPGRVTPYQRRAIAGCPWCDTLGLVDGQDGDPVFCDHRAADAAVVRSSVDDTT
>NZ_CP009360.2|WP_003873228.1|1371935_1373159_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MSSTVSLVSSDVTDLAGGLLALSDRGAGVPLRELALVGLTAAIITYFATGPVRVLATRLGAVAYPRERDVHVTPTPRMGGLAMFLGVVCAVFLASQLPALTRGFVYSSGMPAVLVAGAVIMGIGLIDDRWGLDALTKFAGQITAASVLVTMGVAWSVLYIPIGGVGTIVLDQASSILLTLALTVSVVNAMNFVDGLDGLAAGLGLITALAICMFSVGLLRDHGGDVLFYPPAVISVVLAGACLGFLPHNFHRAKIFMGDSGSMLIGLMLAAASTTAAGPVSQNAYGARDVFALLSPFLLVAAVIFVPMLDLLLAIVRRTRAGRSAFSPDKMHLHHRLLQIGHSHRRVVLLIYLWVGIVAFGAASTIFFRPRDTAAVMLGAIVVAGIATAIPLLRRGDDYEDEEYDRQ
>NZ_CP009360.2|WP_003877292.1|1373374_1373857_+|ATP-synthase-subunit-I
MTTPAQDAPLVFPSVAFRPVRLFAISVAITAVAVLAAGLSGHLMVGVFFGIGLLLGLLNAVLVRRSVDSITAKEHPLKRSMAVNSASRLAIITVVGLIIAYLFRPAGLGVLFGLALFQVLLVASTALPVWKKLRAGDWAPSADGAAAGSDGTEGRNSTDA
>NZ_CP009360.2|WP_003873226.1|1373849_1374608_+|F0F1-ATP-synthase-subunit-A
MPETTFLAESAIEVGEHNHATWLGMTVNTDTILSTGIAALIVLALAFFLRAKITSTGVPSGVQLFWEAITVQMRDQIESAVGMRIAPFVLPLAVTIFVFILISNWLSVLPLQYTDKSGHTTELLKSAAADINYVLALALFVFVCYHVAGIWRRGVVGHPLAVLKGHVAFLAPINVVEELAKPISLSLRLFGNIFAGGILVALIALFPPYIMWAPNAIWKAFDLFVGAIQAFIFSILTILYFSQAMEIEEHHD
>NZ_CP009360.2|WP_024636915.1|1374692_1374941_+|ATP-synthase-F0-subunit-C
MDPQVAAAALIGGGLIMGGGAIGAGIGDGIAGNALVSGIARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVGT
>NZ_CP009360.2|WP_033726727.1|1374950_1375484_+|F0F1-ATP-synthase-subunit-B
MGDASLSVLASSQVVAEGGNNFLVPNGTFFFVLAIFLIVLAVIGTFVVPPVMKVLRERDAMVAKTAADNRKAAEQFEAAQADYEEAMTEARVQASSLRDNARAEGRKAVEDARAKAEQEVLSTLQLAARQLKRERDAVELDLRANVASMSATLASRILGVDVAPAAATTSATKTSGR
>NZ_CP009360.2|WP_003873223.1|1375491_1376832_+|ATP-synthase-subunit-b-delta
MSTFIGQLVGFAAIVFLVVRYVVPPVRRLMAARQEAVRQQLQDAAAAADRLTESTTAHSKAVEAAKAESKRVVDEAQADAKRITEQLAAQAGLEAERIKSQGSRQVDLLRTQLTRQLRLELGHEAVRQAGELVRNYVADPAQQSATVDRFLDDLDAMAPAAADVQYPLMTKMRSSSRVALVNLTERFTTVAKDLDNKALSALSSELVSVAQMLDREIVVTRYLTVPAEDAGPRVRLIERLLSGKVGDVTLEVLRAAVSERWSANSDLIDALEHLSRQALLEVAERENKVDEVEEQLFRFSRILDVQPRLAILLGDYAVPVEGRVGLLRKVLDSASITVNPIVAALLTQTVELLRGRPAEEAVQFLAEVAVARRGEVVAQVSAAADLSDAQRSRLTEVLSRIYGHPVSVQLQIDTELLGGLLIAVADEVIDGTLASRLAAAEAQLPD
>NZ_CP009360.2|WP_003877295.1|1376899_1378564_+|ATP-synthase-subunit-alpha
MAELTISADDIQSAIEEYVGSFTSDTSREEVGTVVDAGDGIAHVEGLPSVMTQELLEFPGGVLGVALNLDEHSVGAVILGDFEKIEEGQQVKRTGEVLSVPVGDAFLGRVVNPLGQPIDGQGDIETDIRRALEIQAPSVVQRQSVKEPLQTGIKAIDAMTPIGRGQRQLIIGDRKTGKTAVCVDTILNQRQNWESGDEKKQVRCVYVAIGQKGTTIASVRRALEEGGAMDYTTIVAAPASDSAGFKWLAPYTGSAIAQHWMYDGKHVLIVFDDLSKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERCAKLSDELGGGSMTGLPIIETKANDISAYIPTNVISITDGQCFLESDLFNQGVRPAINVGVSVSRVGGAAQIKAMKEVAGSLRLDLSQFRELEAFAAFASDLDATSKAQLDRGARLVELLKQPQYQPMPVEEQVVSIFLGTGGHLDSVPVEDVRRFETELLDHMRASEDKILAGIRDTQKLSDEAAEELEKVINNFKKGFAATGGASVVPDEHVEALDEEELEKESVKVKKPAPEKKAKKEQK
>NZ_CP009360.2|WP_003873221.1|1378570_1379485_+|ATP-synthase-subunit-gamma
MAATLRELRGRIRSAGSIKKITKAQELIATSRIGRAQARLDSARPYAFQITAMLTTLAAEAALDHPLLVERPEPKRAGVLVVSSDRGLCGAYNASIFRRAEELFSLLREQGKTPVLYSVGRKALNYYTFRNWDISGSWTGFSEQPQYENAAEIAETLVESFMRGTGGEDEGESDAESVDELHIVYTEFKSMLSQSAVAHRIAPMVVEYVEEPPEVRTLYSFEPDATTLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALADAR
>NZ_CP009360.2|WP_003873220.1|1379513_1380971_+|F0F1-ATP-synthase-subunit-beta
MPATETADKNTKSANSDTSGRVVRVTGPVVDVEFPRGSVPDLFNALHAEITFEELAKTLTLEVAQHLGDNLVRTISLQPTDGLVRGVEVIDTGRSISVPVGQEVKGHVFNALGHCLDKPGYGEDFEHWSIHRKPPPFEELEPRTEMLETGLKVVDLLTPYVRGGKIALFGGAGVGKTVLIQEMINRIARNFGGTSVFAGVGERTREGNDLWVELQEANVLKDTALVFGQMDEPPGTRMRVALSALTMAEWFRDEAGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSTRGRSITSMQAVYVPADDYTDPAPATTFAHLDATTELSRSVFSKGIFPAVDPLASSSTILDPGVVGEEHYRVAQEVIRILQRYKDLQDIIAILGIDELSEEDKQLVNRARRIERFLSQNMMAAEQFTGQPGSTVPLKETIEAFDRLTKGEFDHVPEQAFFLIGGLDDLAKKAESLGAKL
>NZ_CP009360.2|WP_003873219.1|1381010_1381376_+|ATP-synthase-epsilon-chain
MAELNVEIVAVDRKIWSGEATFLFTRTTVGEIGILPRHIPLVAQLVDDAMVRVEREGEDDLRIAVDGGFLSVTEETVTILAESAEFSSEIDESAAREAAESDDPRVAARGRARLRAVGAID

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Crispr_ID: NZ_CP009360_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_6

2948271-2948401

Orphan

Consensus_repeat	Method
TTCCGGCTCGCCCGCCTCTTCGGCCGCTTCCGTTTCTTCGGATTCCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_6

>merge|NZ_CP009360|6|2948271-2948401|CRISPRCasFinder
TTCCGGCTCGCCCGCCTCTTCGGCCGCTTCCGTTTCTTCGGATTCCGGCTCTTCGGCCGCTTCCGCTTCCGTTTCTTCGGATTCCGGCTCGTCCGCCTCTTCGGCCGCTTCCGTTTCTTCGGATTCCGGCT

>NZ_CP009360|6|6|2948271-2948401|CRISPRCasFinder
TTCCGGCTCGCCCGCCTCTTCGGCCGCTTCCGTTTCTTCGGATTCCGGCT	CTTCGGCCGCTTCCGCTTCCGTTTCTTCGGA
TTCCGGCTCGTCCGCCTCTTCGGCCGCTTCCGTTTCTTCGGATTCCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_003877734.1\|2955356_2956463_-\|ionic-transporter-y4hA	unknown	unknown	gnl\|CDD\|223464
NZ_CP009360.2\|WP_003877740.1\|2946117_2947536_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NZ_CP009360.2\|WP_033711482.1\|2957708_2958509_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP009360.2\|WP_033726281.1\|2939202_2940243_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP009360.2\|WP_033711483.1\|2956565_2956913_-\|phosphoribosyl-AMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234598
NZ_CP009360.2\|WP_050594286.1\|2940305_2941928_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP009360.2\|WP_011725306.1\|2950236_2951508_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP009360.2\|WP_003876211.1\|2956909_2957707_-\|imidazole-glycerol-phosphate-synthase-cyclase-subunit	unknown	unknown	gnl\|CDD\|234996
NZ_CP009360.2\|WP_010949157.1\|2937016_2937610_+\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP009360.2\|WP_062889643.1\|2943603_2945001_-\|DUF2156-domain-containing-protein	unknown	unknown	gnl\|CDD\|225451
NZ_CP009360.2\|WP_023869398.1\|2935657_2936989_+\|adenylate-cyclase	unknown	unknown	gnl\|CDD\|214485
NZ_CP009360.2\|WP_033726280.1\|2937696_2939169_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP009360.2\|WP_009977375.1\|2954894_2955353_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NZ_CP009360.2\|WP_011725307.1\|2952511_2953192_-\|TIGR02234-family-membrane-protein	unknown	unknown	gnl\|CDD\|274046
NZ_CP009360.2\|WP_062889664.1\|2941962_2943597_+\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|274331
NZ_CP009360.2\|WP_033726283.1\|2945142_2946045_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_CP009360.2\|WP_011725305.1\|2949424_2950240_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP009360.2\|WP_062895178.1\|2947602_2947956_-\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP009360.2\|WP_011725308.1\|2953188_2954721_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184152
NZ_CP009360.2\|WP_003877736.1\|2951579_2952398_-\|indole-3-glycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|234710

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_003877734.1\|2955356_2956463_-\|ionic-transporter-y4hA	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	1.64986e-90
NZ_CP009360.2\|WP_003877740.1\|2946117_2947536_-\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NZ_CP009360.2\|WP_033711482.1\|2957708_2958509_-\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	4.38946e-64
NZ_CP009360.2\|WP_033726281.1\|2939202_2940243_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	1.05339e-99
NZ_CP009360.2\|WP_033711483.1\|2956565_2956913_-\|phosphoribosyl-AMP-cyclohydrolase	gnl\|CDD\|234598	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.	1.24449e-66
NZ_CP009360.2\|WP_050594286.1\|2940305_2941928_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	6.97691e-155
NZ_CP009360.2\|WP_011725306.1\|2950236_2951508_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP009360.2\|WP_003876211.1\|2956909_2957707_-\|imidazole-glycerol-phosphate-synthase-cyclase-subunit	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	7.10501e-172
NZ_CP009360.2\|WP_010949157.1\|2937016_2937610_+\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	5.74061e-26
NZ_CP009360.2\|WP_062889643.1\|2943603_2945001_-\|DUF2156-domain-containing-protein	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	6.03727e-98
NZ_CP009360.2\|WP_023869398.1\|2935657_2936989_+\|adenylate-cyclase	gnl\|CDD\|214485	smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.	3.94671e-71
NZ_CP009360.2\|WP_033726280.1\|2937696_2939169_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP009360.2\|WP_009977375.1\|2954894_2955353_+\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	5.00349e-57
NZ_CP009360.2\|WP_011725307.1\|2952511_2953192_-\|TIGR02234-family-membrane-protein	gnl\|CDD\|274046	TIGR02234, conserved_hypothetical_protein, trp region conserved hypothetical membrane protein. Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.	2.96941e-48
NZ_CP009360.2\|WP_062889664.1\|2941962_2943597_+\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|274331	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.	2.66492e-178
NZ_CP009360.2\|WP_033726283.1\|2945142_2946045_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	2.45937e-117
NZ_CP009360.2\|WP_011725305.1\|2949424_2950240_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	3.48944e-119
NZ_CP009360.2\|WP_062895178.1\|2947602_2947956_-\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	7.18802e-15
NZ_CP009360.2\|WP_011725308.1\|2953188_2954721_-\|anthranilate-synthase-component-I	gnl\|CDD\|184152	PRK13571, PRK13571, anthranilate synthase component I; Provisional.	0
NZ_CP009360.2\|WP_003877736.1\|2951579_2952398_-\|indole-3-glycerol-phosphate-synthase	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	3.68509e-131

>NZ_CP009360.2|WP_062895178.1|2947602_2947956_-|DUF2752-domain-containing-protein
MVLSGALGYIGLADPHDPASIYPPCPFKWLTGWNCPFCGGLRMTHDLLHGDLWAAVHDNVFLLAAVPTLAAFLLVRRARGRRSLLAAAVPAVVVATLVWTVLRNLPAFPLFPTVLGG
>NZ_CP009360.2|WP_003877740.1|2946117_2947536_-|pyruvate-kinase
MSRRGKIVCTLGPATNSDELILALVEAGMDVARLNFSHGDYADHKAAYERVRVASDATGRAVGVLADLQGPKIRLGRFATGPTYWADGETVRITVADCEGSHDRVSTTYKQLAQDAAVGDRVLVDDGKVGLVVDGIEGDDVICTVVEGGPVSNNKGISLPGMNVSAPALSDKDIEDLTFALELGVDLVALSFVRSPSDVELVHEVMDRVGRRVPVIAKLEKPEAVDNLEAIVLAFDAIMVARGDLGVELPLEEVPLVQKRAIQMARENAKPVIVATQMLDSMIENSRPTRAEASDVANAVLDGADAVMLSGETSVGKYPLAAVRTMARIICAVEDNSTAAPPLTHVPRTKRGVISYAARDIGERLDAKALVAFTQSGDTVKRLARLHTPLPLLAFTAWPEVRSQLAMTWGTETFIVPMMTSTDGMIRQVDKSLLELGRYRRGDLVVIVAGAPPGTVGSTNLIHVHRIGEDDV
>NZ_CP009360.2|WP_033726283.1|2945142_2946045_-|acyl-CoA-thioesterase-II
MPAGAESQEPNTTADFEELLATLDLRRVADDLFVGSHPSKNPMRTFGGQLMSQSFVASSRSLIRDDLPPSALSVHFINGGDTGKDIEYRVTRLRDERRFANRRVDAVQDGTLLSSALISYMAGGRGLEHGVDPPRVADPETQPTIGELLHGYEETVPHFVNALQPIEWRYTNDPAWVMRMKGERLPHNRVWVKALGKLPDDPVLHTATMVYSSDTTVLDSVITTHGLSWGFDRIFAASANHSIWFHRQVDFNDWVLYSTSSPVAADSRGLGTGHFFDRSGQPLATVVQEGVLKYFPSARR
>NZ_CP009360.2|WP_062889643.1|2943603_2945001_-|DUF2156-domain-containing-protein
MNGPVVGVATKPRAGERVVVSADSRAARLIGALALFCAACWLIQILVHHHSNPSWHYADRLAWSLTVLVAVAWIARGIFLGRPVTTMHAAVAAFFVLAGLGLHVLSFDLLGDVLIAGSGMVLMWPTSSHPRPADLPRIWELINATRDDALAPFTMQTGKSYHFSADGSAALAYRTRLGIAVVSGDPIGDEAHFPELVADFAATCHAHGWRIAVVGCSERRLELWKDSAVLGQTLRPIPIGRDVVVDVSSFDMVGRKFRNLRQAVKRTHNCGVTTEIVAEQELSDELLAELTEVVRESSKGAHADRGFHMNLDGVLEGRFPGILLIIARDATGKVQAFHRYATAGGGSDITLDVPWRRRGAPNGLDERLSVDMVMAGKDRGAQRVSLAFAAFPEIFEDKNRGWTRRIFYRLTHVLDPLIALESLYRYVRKWHALDGRRYAVISMTQIVPLLFVLLSLEFLPRRRHL
>NZ_CP009360.2|WP_062889664.1|2941962_2943597_+|thiol-reductant-ABC-exporter-subunit-CydC
MAAAGLLSPRLPRLAAAITLGVLSLGSALALAGVSAWLITRAWQMPPVLDLSVAAVAVRMFAISRGVLHYCERLVTHDTALRASGAARVAVYQRLTRGGAAAAVRLHSGELVARVGADVDELANVLVRALVPMGVAAVLAVAATAVVAAISPAAGGVLAICLLVAGFVAPRLAGRAAATQEDIARQQHSQRDSAAMLALEHAPELRIAGLLPEVIAESQRRQRAWGAALDAAGKPAAVAEAMPTAAIGASVMGAVVAAIGMAHTVAPTTLAVLMLLPLSAFEAMTPLPAAAVQLTRSRIAARRLLELTATEPPRPAGSAPRPTGPGRLTADIHSGHDGAARASRVTLDLPPGARLAVTGASGCGKTTLLMTLSGLLPPLQGQVVLDGVALSEFDECELARAIVFFAEDAHVFATTVRDNLLVARGDCPDDELTDALGAVGLGDWLAGLPDGLSTVLTGGAQAISAGQRRRLLLARAVISPARIVLLDEPTEHLDAGDAERLLRDLLAPDSRLLSPPRTVVVATHHLPEGIGCRELRVDRGPAAG
>NZ_CP009360.2|WP_050594286.1|2940305_2941928_+|thiol-reductant-ABC-exporter-subunit-CydD
MRRYLVAAVGCGVLISGCAIGSAVVLAGIVARVVGDSSAGEMRSWPAPLSILLALWAIRAVTHWLQARLGQRGASAVIADLSGQVLAAVTARPPAELAVQRDEAAVVVTRGLDGLRPYFTGYLPTLMLAAILTPATVAVIAAYDVKSTVIVAITLPLIPIFMVLIGLATRDRSAAALGAMTTLQARLLDLIAGIPTLRALGRSSGPDRRIAELAAAHRRSAMATLRIAFLSALVLELLATLGVALIAVGIGLRLVFGEMTLTAGLTVLLLAPDVYWPLRRIGVEFHAAQDGRTAAGAAFALIGEPGGPSAANVRTRTVTARGAPVRLEHLSVAGRDGQAPCDLSAVIEPGAVTVLTGRNGAGKSTTLQAIAGIAAPSSGRVTVGGVDVADLDPRGWWAQLSWLPQRPVLVPGTVDDNLRLFGELDDIETACAIAGFDAVLAELPDAGATPLGRGGVGLSLGQRQRLGLARALGSRAAVLLLDEPTAHLDAGTEERVLRAVVERARAGATVVVVGHREQVLAIGDRVVAVSADRGARCAAA
>NZ_CP009360.2|WP_033726281.1|2939202_2940243_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MGLQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIGEPEPLRRTALNTIGPVWDGNEVWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWRGWADFGIAAGSWLPAVLWGVAFAVLVRGLPVDADGHIHLSVTDVLNPYTLLGGLATAGLFLLYGAVFVALKTSGAIRDDAYRFAVWLSLPVTGLVAGFGLWTQLGYGKNWTWLVLAVAVVAQLTSLLLVWRRASDGWAFTCLALVVAAVVILLFGALYPNLVPSTLDSRWSLTIYNASSTHYTLKVMTWVTAIMAPVTVVYQAWTYWVFRQRLSADRIPAPVGLTRRPS
>NZ_CP009360.2|WP_033726280.1|2937696_2939169_+|cytochrome-ubiquinol-oxidase-subunit-I
MNVVDISRWQFGIVTVYHFIFVPLTIGLAPLLAIMQTAWVATGNTAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAMEGLFAFFFESTFIGLWIFGWGRLPKLIHLACIWIVAIGVNASAFFIIAANSFMQHPVGAHYNPATRRAELDDIFALLSNNTAQAAFSHTVTGALLTAGTFVAAVSAWWMVRSRAGGSTTPAAETEARTMFRPAAILGCGVVLLATVALFFTGDRQGKLMFVQQPMKMASAESLCHTQTDPDFSVLTIGTHNNCGSVTEVIKVHYVLPWLAEGRFSGVTLRGVNELQQQYQQRFGPDDYRPNLFVTYWSFRLMIGFLAIPVLFALTVLWVTRRGRTPRQRWMSWFALLTIPTPFLANIAGWVFTEMGRQPWVVVPNPTGDQAVRMTVREGVSNHVPGMVITSLVTFTLVYAVLAVVWFFLLKRYTVEGPLEHDAEPAPPRTPSDDEVAPLSFAY
>NZ_CP009360.2|WP_010949157.1|2937016_2937610_+|HdeD-family-acid-resistance-protein
MCQTAAMTMSPGSPVPSLLPHLWKSALLSGILSLALGVLVLVWPGISILVAAVAFGVYLLITGIAQVVFAFSLHVSAGSRVLLFISGAASLILALLAFRHFGQGYAILLLAIWIGIGFIFRGVATTISAVSDPNLPGRGWNIFLGVISLLAGIVVLASPFESIVTLAIVVGAWFVVIGVFEIISSFGIRKASKTLAG
>NZ_CP009360.2|WP_023869398.1|2935657_2936989_+|adenylate-cyclase
MAAKSCGAPPLWPNGSSKRPDCVAAARAQSRARNQHYADSAARQSRVLAIAAWLAVLVCADFILLQVVTGAWTWQIVSLNVVAALIFAIVPWLHRFGDLVAPLTFLGAAYVTVFVSCWDVGTASGGQYFFLVGACLVLLVMGIEHTVLAAVLAAIGAGLVIAVEFAFPRDTGLQPAWAQSMSFVVTIVSACIMVFVAVWFALRDTQRAEAVMESEYQRSEALLANMLPGSIAERLKHSDGDIIADKYDDASVLFADIVGFTERASGTAPADLVRFLNRLYIAFDELVDKHGLEKIKVSGDSYMVVSGVPRVRPDHAAALADFALDMVKVAAALKDPYGRPVPLRVGMACGPVVAGVVGSRRFFYDVWGDAVNVASRMESTDSVGRIQVPETMYERLAPEFVLQERGRIEVKGKGVMRTWYLIGRKPAEAPTDLVAEQPHTAHV
>NZ_CP009360.2|WP_011725305.1|2949424_2950240_-|tryptophan-synthase-subunit-alpha
MTVKQSQASRLGPIFEACRDDDRAALIGYLPTGYPDVPTSVQAMVALVESGCDIVEVGVPYSDPGMDGPTIARATEAALHGGVRVRDTLAAVEAISAAGGRAVVMTYWNPVLRYGVDAFARDLAAAGGYGLITPDLIPDEAGQWLAASERHGLDRIFLVAPSSTPQRLALTVEASRGFVYAASTMGVTGARDAVSHAAPELVSRVREISDIPVGVGLGVRSREQAAQIGGYADGVIVGSALVSALGDGGLTALRALTEELAAGVRQRAAAS
>NZ_CP009360.2|WP_011725306.1|2950236_2951508_-|tryptophan-synthase-subunit-beta
MTVDISPRTRPDLPLPSAAIAEPTRHEPDAGGHFGVYGGRYVAEALMAVIEEVTTAYEKERVNQDFLDTLDYLQANYAGRPSPLYEAPRLSEQAGARIFLKREDLNHTGSHKINNVLGQALLAQRMGKKRVIAETGAGQHGVATATACALLGLECVIYMGAVDTERQALNVARMRLLGATVVSVQSGSKTLKDAINEAFRDWVTNADNTFYCFGTAAGPHPFPAMVRDFQRIIGLEARAQIQAQAGRLPDAVVACIGGGSNAIGIFHPFIDDPGVRLVGFEAAGDGVETGRHAATFSGGSPGAFQGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAYLRETGRAEYRPITDAEAMDAFRVLCRTEGIIPAIESAHAVAGALKLGPELGRGAIIVVNLSGRGDKDVETAAKWFGLLGSSDR
>NZ_CP009360.2|WP_003877736.1|2951579_2952398_-|indole-3-glycerol-phosphate-synthase
MSPATVLDSILEGVRADVAAREALISLSEIKAAAAAAPPPLDVMAALREPGIGVIAEVKRASPSAGSLATIADPAKLARAYEDGGARIISVLTEERRFHGSLDDLDAVRAAVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSALVSMLDRTESLGMTALVEVHTEEEADRALRAGAKVIGVNARDLATLEVDRDCFARIAPGLPSNVIRIAESGVRGTGDLLAYAGAGADAVLVGEGLVKSGDPRAAVADLVTAGTHPSCPKPAR
>NZ_CP009360.2|WP_011725307.1|2952511_2953192_-|TIGR02234-family-membrane-protein
MTEARARRLDGRWLIRIAQLLLVIAAVGLWVAARLPWVVIRSFDGLGPPKAVTLSGGTWSTALLPLALLLLAAAVAAIAVRGWLLRALAGLLAVASLAVGYLGVSLWAVPDVAVRGTELAHLSVISLVGSERRYLGAGITVAAAALTLIAAVLLMRSASDPKSARSSAMKYATPATRRSITRRNAADGAMLEQPETPEMSERMIWDALDEGRDPTDRPSGSDTEGR
>NZ_CP009360.2|WP_011725308.1|2953188_2954721_-|anthranilate-synthase-component-I
MHAHLAATTSREDFRQLAAEHRVVPVTRKVLADSETPLSAYRKLAANRPGTFLLESAEHGRSWSRWSFIGAGSPSALTVRDGEAGWLGVVPQDAPTGGDPLQALRATLDLLATGPLSGLPPLSGGMVGFFAYDLVRRLERLPELAVDDLGLPDMLLLLATDLAAVDHHEGTITLIANAVNWNGTDERVDEAYDDAVARLDVMTAALGQPLASTVATFERPEPRYRAQRSVEEYGKIVDYLVEQIAAGEAFQVVPSQRFEMDTDVDPIDVYRMLRVTNPSPYMYLLHVPNDAGGTDFSIVGSSPEALVTVADGVATTHPIAGTRWRGQTDEEDQLLEKELLADEKERAEHLMLVDLGRNDLGRVCAPGTVRVDDYSHIERYSHVMHLVSTVTGVLDAGRTALDAVTACFPAGTLSGAPKVRAMELIEEVEKTRRGLYGGVVGYLDFAGNADFAIAIRTALMRGGTAYVQSGGGVVADSNGPYEYTEATNKARAVLGAIAAAETLTEPGARR
>NZ_CP009360.2|WP_009977375.1|2954894_2955353_+|peroxiredoxin
MKPGDTVADFELPDQTGTPRKLSDLLAAGPVVLFFYPAAMTPGCTKEACHFRDLAAEFAAVGANRVGISADPVDKQAKFAELQKFDYPLLSDTDGAVAAQFGVKRGLLSKLLPVKRTTFVIDTDRTVLDVISSEFNMDTHADKALATLRARA
>NZ_CP009360.2|WP_003877734.1|2955356_2956463_-|ionic-transporter-y4hA
MSKWLSRNVLSWTVVVPVLAVVVLALIWGERLGPVLVALAALFLIGAVVAAVHHAEVVAHRIGEPFGSLVLAAAVTIIEVALIVELMASGGNETATLARDTAFAALMITTNGIAGLSLLLGSRRYGVTLFNAEGSGAALATLTTLATLSLVLPAFTTTQVGKEFSPGQLTFAAVASLLVYLLFVFTQTVRHRDFFLPIAQKGQKSLFEDESHADPPSTREALVSLVLLLCALVAVVGLAEEESPAVERAVTAVGFPQTFVGVIIAALVLLPETLAAVRAARQGRIQISLNLAYGSAMASIGLTIPAIALASIWLKGPLVLGLGAIQLVLLALTVVISVLTVVPGRATRLQGEVHLVLLAAYVFLAVSP
>NZ_CP009360.2|WP_033711483.1|2956565_2956913_-|phosphoribosyl-AMP-cyclohydrolase
MTLDPQIAARLKRNADGLVTAVVQERGSKDVLMVAWMDDAALARTLETREATYYSRSRGQQWVKGETSGHTQYVHSVRLDCDGDTVLLTVDQVGGACHTGDHSCFDTDVLLHPQD
>NZ_CP009360.2|WP_003876211.1|2956909_2957707_-|imidazole-glycerol-phosphate-synthase-cyclase-subunit
MSPNSTGLAVRVIPCLDVDDGRVVKGVNFENLRDAGDPVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAEQVFIPLTVGGGVRTVADVDVLLRAGADKVSVNTAAIARPELLEEMARQFGSQCIVLSVDARTVPPGAVPTPSGWEVTTHGGRRGTGIDAVEWASRGADLGVGEILLNSMDADGTKAGFDLEMLQAVRSAVTVPVIASGGAGAAEHFAPAIEAGADAVLAASVFHFRELTIGQVKAAMAEAGIPVRMVR
>NZ_CP009360.2|WP_033711482.1|2957708_2958509_-|inositol-monophosphatase
MDLDALVARASAILDDASKPFLAGHRADSAVRKKGNDFATDVDLAIERQVVAALVEATGIGVHGEEFGGSAVDSEWVWVLDPVDGTFNYAAGSPMAGILLALLHHGDPVAGLTWLPFLDQRYTAVTGGPLRKNGNPRPPLTSIDLADALVGAGSFSADARGRFPGRYRMAVLENLSRVSSRLRMHGSTGLDLAYVADGILGAAVSFGGHVWDHAAGVALVRAAGGVVTDLAGRPWTPASDSALAAGPGAHAEILDILGNIGRPEDY

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Crispr_ID: NZ_CP009360_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_7

3207276-3207366

Orphan

Consensus_repeat	Method
CCTACCCCGCTTCGCGGCGCAGCGCGGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_7

>merge|NZ_CP009360|7|3207276-3207366|CRISPRCasFinder
CCTACCCCGCTTCGCGGCGCAGCGCGGACGCGGCCAGGTCCATTTGTGTTCGCGGCCGCCCTACCCCGCTTCGCGGCGCAGCGCGGACGCG

>NZ_CP009360|7|7|3207276-3207366|CRISPRCasFinder
CCTACCCCGCTTCGCGGCGCAGCGCGGACGCG	GCCAGGTCCATTTGTGTTCGCGGCCGC
CCTACCCCGCTTCGCGGCGCAGCGCGGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_023869499.1\|3213315_3214107_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|226237
NZ_CP009360.2\|WP_009977646.1\|3202529_3203129_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP009360.2\|WP_023869502.1\|3216768_3217980_-\|S-adenosylmethionine-synthase	unknown	unknown	gnl\|CDD\|235374
NZ_CP009360.2\|WP_009977644.1\|3200598_3201081_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP009360.2\|WP_003872536.1\|3199765_3200104_+\|hemophore-related-protein	unknown	unknown	gnl\|CDD\|275322
NZ_CP009360.2\|WP_003872548.1\|3210650_3211136_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009360.2\|WP_023869500.1\|3214105_3215068_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP009360.2\|WP_003872539.1\|3201130_3202408_-\|riboflavin-biosynthesis-protein-RibBA	unknown	unknown	gnl\|CDD\|181774
NZ_CP009360.2\|WP_003872537.1\|3200137_3200602_-\|membrane-protein	unknown	unknown	gnl\|CDD\|371225
NZ_CP009360.2\|WP_023869501.1\|3215113_3216604_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP009360.2\|WP_071321535.1\|3211263_3213231_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP009360.2\|WP_031354181.1\|3208726_3209674_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP009360.2\|WP_003872542.1\|3203951_3205508_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP009360.2\|WP_023869503.1\|3218076_3219339_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP009360.2\|WP_023869493.1\|3205504_3206530_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP009360.2\|WP_095956254.1\|3206526_3207234_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
NZ_CP009360.2\|WP_009977666.1\|3219360_3219687_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
NZ_CP009360.2\|WP_071321448.1\|3198195_3199662_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP009360.2\|WP_023869497.1\|3209817_3210645_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
NZ_CP009360.2\|WP_003877628.1\|3203247_3203955_+\|LppX_LprAFG-lipoprotein	unknown	unknown	gnl\|CDD\|369238

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_023869499.1\|3213315_3214107_-\|lysoplasmalogenase	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	2.33996e-38
NZ_CP009360.2\|WP_009977646.1\|3202529_3203129_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.39046e-107
NZ_CP009360.2\|WP_023869502.1\|3216768_3217980_-\|S-adenosylmethionine-synthase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP009360.2\|WP_009977644.1\|3200598_3201081_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	7.2232e-64
NZ_CP009360.2\|WP_003872536.1\|3199765_3200104_+\|hemophore-related-protein	gnl\|CDD\|275322	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family. Members of this family occur as paralogs in most Mycobacterium strains, including 2 in M. tuberculosis, 6 in M. avium, and 9 in M. smegmatis. Members have a cleaved N-terminal signal peptide and exactly two Cys residues in the mature protein, both at invariant positions. The best characterized member, Rv0203, is a hemophore, that is, a secreted polypeptide that binds heme and delivers it to a transport system for import. Hemophores are protein analogs of siderophores, natural products that chelate non-heme iron and deliver it to receptors for transport. The unrelated HasA family of hemophores has been described in Gram-negative bacteria such as Yersinia pestis and Pseudomonas aeruginosa. [Transport and binding proteins, Other].	9.08699e-11
NZ_CP009360.2\|WP_003872548.1\|3210650_3211136_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.26182e-20
NZ_CP009360.2\|WP_023869500.1\|3214105_3215068_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.65936e-88
NZ_CP009360.2\|WP_003872539.1\|3201130_3202408_-\|riboflavin-biosynthesis-protein-RibBA	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP009360.2\|WP_003872537.1\|3200137_3200602_-\|membrane-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.40191e-17
NZ_CP009360.2\|WP_023869501.1\|3215113_3216604_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	2.94716e-116
NZ_CP009360.2\|WP_071321535.1\|3211263_3213231_-\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP009360.2\|WP_031354181.1\|3208726_3209674_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	4.05419e-160
NZ_CP009360.2\|WP_003872542.1\|3203951_3205508_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.16841e-34
NZ_CP009360.2\|WP_023869503.1\|3218076_3219339_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP009360.2\|WP_023869493.1\|3205504_3206530_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.04985e-105
NZ_CP009360.2\|WP_095956254.1\|3206526_3207234_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	1.45879e-134
NZ_CP009360.2\|WP_009977666.1\|3219360_3219687_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	1.16728e-19
NZ_CP009360.2\|WP_071321448.1\|3198195_3199662_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	5.1853e-55
NZ_CP009360.2\|WP_023869497.1\|3209817_3210645_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.23925e-24
NZ_CP009360.2\|WP_003877628.1\|3203247_3203955_+\|LppX_LprAFG-lipoprotein	gnl\|CDD\|369238	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein. This entry consists of several lipoproteins mainly from Mycobacterium species, collectively known as the LppX_ LprAFG family. Proteins in this entry include LprG, LppX, LprF and lprA.	7.28135e-89

>NZ_CP009360.2|WP_095956254.1|3206526_3207234_-|ribulose-phosphate-3-epimerase
MALMPCNTGQPRGPLIAPSILSADFSRLADEAAAVTGADWLHVDVMDNHFVPNLTIGLPVVQSLLATTTIPMDCHLMIENPDRWAPPYAEAGAHNVTFHAEATDNPIGVARDIRAAGAKAGISVKPGTPLEPYLEILPQFDTLLIMSVEPGFGGQSFIAEVLGKVRTARKLIDAGELTILVEIDGGINADTIEQAAEAGVDCFVAGSAVYGADDPAAAVEALRRQALGASQHLRR
>NZ_CP009360.2|WP_023869493.1|3205504_3206530_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTASLGDRLDAAMRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEVLALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAVADPNPQAAGGAGRLQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREIPSEAKVLNDDSRTMVIRTHDPAEVIKAVSDRTDVLLEGGPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAKALRWQFDGVDRVGPDLLLSLVPRSG
>NZ_CP009360.2|WP_003872542.1|3203951_3205508_+|MFS-transporter
MTAQTGRRVAISAGSLAVLLGALDAYVVVTIMRDIMTDVHIPINQLQRITWIITMYLLGYIAAMPLLGRASDRFGRKLVLQVSLALFMVGSVVTALAGHWGDFHLLIGGRTIQGVASGALLPVTLALGADLWAQRNRAGVLGGIGAAQELGSVLGPLYGIFIVFLFHDWRYVFWINVPLTLIAMVMIQFSLPSHEKVEQPEKVDLVGGVLLAVALGLAVIGLYNPEPDGKQILPSYGLPLVLGAVVVGILFLLWERFARTRLIEPAGVHFRPFLAALGASLFAGAALMVTLVDVELFGQGVLGQDQTQAAGLLLWFLIALPIGAVLGGWIATRVGDRAMTFVGLLIAAYGYWLIHYWRQDVLSQKHNVLGLFSVPVLHADLLVAGVGLGLVIGPLTSAALRVVPSAQHGIASAAVVVARMTGMLIGVAALSAWGLYRFNQIVANLTAAIPPNASLLERIAAQGTMYLKAFAMMYGDIFAATVVICIAGALLGLLIGGRKEHAEEPEIVEPQAVSLGER
>NZ_CP009360.2|WP_003877628.1|3203247_3203955_+|LppX_LprAFG-lipoprotein
MQTRRRLSAVFASLTLATALIAGCSSGSKQSGAPLPDPTSLVKQSADATKNVKSVHLVLSIQGKISGLPIKTLTGDLTTTPATAAKGNATITLGGSDIDANFVVVDGTLYATLTPNKWSDFGKASDIYDVSVLLNPDNGLGNALANFSNAKAEGRETINGQSTIRISGNVSADAVNKIMPQFNATQPVPSTVWVQETGDHQLVQANLQKSSGNSVQVTLSNWGEQVQVTKPPVSS
>NZ_CP009360.2|WP_009977646.1|3202529_3203129_-|riboflavin-synthase
MFTGIVEELGEVTARDVLADAARLTIRGAVVTADAGHGDSIAVNGVCLTVAELLPDGRFTADVMGETLNRSNLGALQVGSRVNLERAAALNSRLGGHIVQGHVDGTGRIVARTPSEHWEVVRIEVPPEVARYVVEKGSITVDGISLTVSGLGGEPRDWFEVSLIPTTRELTTLGGAPVGTQVNLEVDVIAKYVERLMSR
>NZ_CP009360.2|WP_003872539.1|3201130_3202408_-|riboflavin-biosynthesis-protein-RibBA
MTRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPTSIAEDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKMGHDLAGLDDFHESVHLPGEFGGAL
>NZ_CP009360.2|WP_009977644.1|3200598_3201081_-|6,7-dimethyl-8-ribityllumazine-synthase
MSPAAGVPEMPALDASGVRLGIVASTWHSRICDALLAGARKVAADSGVENPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFEYVCDAVTQGITRVSLDASTPVANGVLTTDNEQQALDRAGLPDSAEDKGAQAAGAALSAALTLRELRARS
>NZ_CP009360.2|WP_003872537.1|3200137_3200602_-|membrane-protein
MTPPEPERWDVVLRPHRTPLFVYGAAVLIAAAHIALGLLLKVGSTGVVFRTSDQVAIAVLGLVIAGVVLLFARPRLRIGPAGVSVRNLLGDKLIEWPDVVGVSFPVGHRWARIDLPDDEYIPVMAIQAVDKGRAVDAMDTVRSLLARYRPDLQG
>NZ_CP009360.2|WP_003872536.1|3199765_3200104_+|hemophore-related-protein
MMKRSLAKLAVTVGGLALASTAGAGVASADPDYGPMINTTCSYDQAMRAVHAENPMAAQYLDQSPPNQQFLQQYLASSPDQRVNLLHAIEHNQGAQQALPIFQQMMTDCTRY
>NZ_CP009360.2|WP_071321448.1|3198195_3199662_+|PPE-family-protein
MTMPIWAAFPPEVHSAALSSGPGPGSLLAAEQAWQALSAEYASAAAELGDLLAAVQAGTWQGPSAEAFVAAHVPYLAWLLQNSTNSTAAAREAETVAAAYTAALSAMPTLEQLATNHAVFAQLVATNFFGVNTIPIAQNEIEYLQMWLQAATTMAIYEAVSETAMTWKPPTAPPPQIQKTGVANQDAGGGPTQLSWWVTRVQEVARAISGDLSQSPSNPSATLSDLMSDPLLATEVPHWAGESLLYFTPQVPQLTQLSFGLIAPFIPAAGAPGVAGLAGLAGLAGGTPAPVLPGVAAAPSGGGAAAVLAPGPGASAATVSPAPAPAGTPATAPAPVGPPTPPPATGVPGFSAPYAVGPPGLGAGGNLSAGTRAGQTSPDFATAAAPAAADRREQVRRRRRPRPGQIDPGYRHEYLDTDPGGDPESVTASDRGAGPIGFAGTTGTTGSAPVGLTTVAGDALDDGPRMPLLPGSWSAETEDPENGQVGGG
>NZ_CP009360.2|WP_031354181.1|3208726_3209674_-|methionyl-tRNA-formyltransferase
MRLVFAGTPEPALPALRRLLDSPRHEVIAVLTRPDAASGRRGKPEPSPVAREALDRGIPVLRPARPNSPEFVAELAQLAPDCCAVVAYGALLRDELLAVPPHGWINLHFSLLPAWRGAAPVQAAIAAGDTITGASTFRIEPALDSGPIYGVVTEAIRPTDTAGELLARLAVSGAELLSATLDGIADSTLTPRPQPAEGVSIAPKITVEQARVRWDLPAPVVERRIRAVTPNPGAWTVIGDLRIKLGPVRLGAASDLPAPPEPLPPGAIHVDRKSVWVGTGSDPVRLGQIQPPGKKFMNAVDWARGARLDPAARAT
>NZ_CP009360.2|WP_023869497.1|3209817_3210645_+|class-I-SAM-dependent-methyltransferase
MTLDTTTADASVAARHRTVWALGDYALMAEEVMAPLGPTLVEAAGIGPGVRVLDVAAGSGNITLPAAAAGASVVSTDLTPELLQRSRDRAAGLGLTIDYREANAQALPFGDGEFDAVVSAIGVQFAPDHQRAADELVRVCRPGGRIGLISWTPEGFFGRMLATIRPYRPSLSHPVPPAALWGRPGYVRALLGERIGEITTARGMLPVNRFGSAEDVHAYFKQHYGPTIEAYANIGHNRVLAAELDAQLVELAAQHLSDGTMGWEYLLVTAEKQSG
>NZ_CP009360.2|WP_003872548.1|3210650_3211136_-|MarR-family-transcriptional-regulator
MAADHTTVDESLDAITDALLTASRLLMAISARSVGQVDETITIPQFRTLVILSNRGPVNLATLAGLLGVQPSATGRMVDRLVAAGLIDRLPHPTSRRELLAALTTRGRDVVHQVTAHRRAEIAAIVAKMPPAERHGLVRALTAFTAAGGEPDVHLDAEIDL
>NZ_CP009360.2|WP_071321535.1|3211263_3213231_-|primosomal-protein-N'
MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFLLERRHDTDHQGKLGWLDRVVSPEPVLTAEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREARAAAGIPMPAPVDPSGWDGYGRGAQFLAALAESRAARAVWQALPGEPWTDRFAEAAAQTVRAGRSVLAIVPDQRDLDALSHAVTSRIDAAGVVALSAGLGPAARYRRWLAALRGSARVVIGTRSAVFAPLSDLGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDIVAARPVVRARTPRVIALDDTGYADERDPAARTARIPSVALRAARSALQDGAPVLVQVPRRGYVPSLACARCRTIARCRHCTGPLSLAESPGEGGGGLVCRWCGRVDPTRRCARCGSDAVRAVVVGARRTAEELGRAFAGTTVITSSGDAVVPEVADGPALVVATPGAEPRARGDYGAALLLDTWALLGRQDLRAAEDALWRWMTAAALVRPRGDGGVVMVVAESSLPTVQSLIRWDPVGHAESELTARAEVGLPPSVHMAAVDGTPAAVNALLDEAGLTGGQTLHADLLGPVDLPPGARRPAGTPPGAPVTRMLVRVPRRDGLALAAALRRGVGVLSARQTHEPARVQIDPLHIG
>NZ_CP009360.2|WP_023869499.1|3213315_3214107_-|lysoplasmalogenase
MEVPYAPRLVAGAWVVAGWVALAYGIYLTVLALRSPPGVELTGHWVLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAFLFAHMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTLPVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAYAAAQILITAGFFFGRDAAGDAAGEATGDATGDAVEPVE
>NZ_CP009360.2|WP_023869500.1|3214105_3215068_+|alpha/beta-hydrolase
MPRLDNPADEKPGIDPILQKVLDAVPFRLSTEDGIDAARQRFRDLPRRPLHPELRVEDRTIPGPQGAIAVRIYWPPSHSESRPAPVVLYFHGGGFVIGDLDTHDGTARQHAVGAGAIVVSVDYRLAPEHPYPAAVEDAWAATLWAAENAAGLHGDPGRIAVAGDSAGGTLAAVTAQRARDRGGPPVRFQLLWYPSTMWDASLPSFAENATAPILDVKAVAEFSRWYAGDVDLSDPPADMAPGRATDLSNLPPAYIGVAGYDPLRDDGIRYGERLAAAGVAAQVHNAETLVHGYLGYAGVVPAATAAMERGLVALRTALQG
>NZ_CP009360.2|WP_023869501.1|3215113_3216604_+|NAD(P)/FAD-dependent-oxidoreductase
MSSPAVPDHHTLIIGAGFSGIGAAIKLDKAGLPDYRVIEAGDGVGGTWHWNTYPGIAVDIPSFSYQFSFEQSRHWSRTYAPGRELKAYAEHCADKYGIRSRIRFNTKVLAAEFDDEQRLWRVHTDPGGTVTARFLISACGVLTVPNLPDIDGVDSFGGITMHTARWDHGQDLSGKRVAVIGTGASAVQVIPEIAPIVKSLTVFQRTPIWCFPKLDVPLPAPARWAMRIPGGKSVQRLLSQAYVEVTFPISAHYFTVLPLAKRMATLGKSYLRQQVRDPEVREKLTPKYAVGCKRPGFHNGYLATFNRDNVRLVTEPIDKITPDAVATTDGEHHRIDVLILATGFKVMDPDNVPTFAVTGPGGRSLSRFWDEHRLQAYEGVSVPGFPNLFTVFGPYGYVGSSYFALIEAQTHHIVRCLKRAERLGAARVEVSEEANARYFAEMMRRRHRQIFWQDSCKLANSYYFDKNGDVPLRPGTTPEVYWRSRRFSLDDYRFSA
>NZ_CP009360.2|WP_023869502.1|3216768_3217980_-|S-adenosylmethionine-synthase
MSEKGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAIKDTPEMMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYEDDIPVRLDTVVVSTQHAADIDLENTLTPDIREKVLNTVLDDLAHDTLDTSSTRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTAAYGHFGRTDVELPWEQLNKVDELKRAV
>NZ_CP009360.2|WP_023869503.1|3218076_3219339_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MYDRNRAFTRAARIVVGVSGGIAAYKACTVVRQLSEAGHSVRVIPTESALRFVGAATFEALSGQPVHTGVFDDVPEVPHVQLGKQADLVVVAPATADLLARAVHGRADDLLTATLLTARCPVLFAPAMHTEMWLHPATVDNVATLRRRGAVVLEPAAGRLTGTDSGSGRLPEAEEITTLAQLLLERHDALPYDLAGCRMVVTAGGTREPVDPVRFIGNRSSGKQGYAVARVAAQRGAEVTLIAGHTAGLIDPAGVEVVHVSSAEQLGNAVSKHAAEADVLVMAAAVADFRPARVAAAKIKKGVEAPTIELVRNDDVLAGAVRARAHGELPNLRAIVGFAAETGDANGDVLFHARAKLRNKGCDLLVVNAVGEGRAFEVDSNDGWLLAADGTESALQHGSKTLMASRIVDAIAAFLRGDGG
>NZ_CP009360.2|WP_009977666.1|3219360_3219687_-|DNA-directed-RNA-polymerase-subunit-omega
MTNSQSDAALAAVPDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE

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Crispr_ID: NZ_CP009360_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_8

3452559-3452649

Orphan

Consensus_repeat	Method
GCCCGGCGACGATGCGCGCCGCCGCGCGGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_8

>merge|NZ_CP009360|8|3452559-3452649|CRISPRCasFinder
GCCCGGCGACGATGCGCGCCGCCGCGCGGCGCGAGGAGGAGCCGGGCAATCTGACCCCGCCCGGCGACGATGCGCGCCGCCGCGCGGCGCG

>NZ_CP009360|8|8|3452559-3452649|CRISPRCasFinder
GCCCGGCGACGATGCGCGCCGCCGCGCGGCGCG	AGGAGGAGCCGGGCAATCTGACCCC
GCCCGGCGACGATGCGCGCCGCCGCGCGGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_031343821.1\|3464118_3464952_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298
NZ_CP009360.2\|WP_009978008.1\|3454692_3455238_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP009360.2\|WP_024637394.1\|3442598_3442925_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009360.2\|WP_033717278.1\|3459307_3462535_-\|carbamoyl-phosphate-synthetase	unknown	unknown	gnl\|CDD\|237263
NZ_CP009360.2\|WP_023870835.1\|3449149_3450826_-\|RNase-J-family-beta-CASP-ribonuclease	unknown	unknown	gnl\|CDD\|223668
NZ_CP009360.2\|WP_003875197.1\|3447018_3447333_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP009360.2\|WP_033718091.1\|3450845_3451748_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP009360.2\|WP_009978009.1\|3455234_3456035_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_CP009360.2\|WP_003875187.1\|3456077_3456818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366780
NZ_CP009360.2\|WP_023861132.1\|3448168_3449041_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|272862
NZ_CP009360.2\|WP_033718089.1\|3453888_3454623_-\|cell-division-protein-DivIVA	unknown	unknown	gnl\|CDD\|377456
NZ_CP009360.2\|WP_023870836.1\|3447332_3448163_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274889
NZ_CP009360.2\|WP_003875199.1\|3443692_3444235_+\|amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|236132
NZ_CP009360.2\|WP_033718289.1\|3444327_3446652_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP009360.2\|WP_003878641.1\|3451791_3452544_-\|thymidylate-synthase-(FAD)	unknown	unknown	gnl\|CDD\|234847
NZ_CP009360.2\|WP_003875200.1\|3443054_3443627_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|223632
NZ_CP009360.2\|WP_033712676.1\|3456806_3458009_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340817
NZ_CP009360.2\|WP_003875184.1\|3458968_3459295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_033712672.1\|3462531_3464055_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341286
NZ_CP009360.2\|WP_033712675.1\|3458069_3458849_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235975

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_031343821.1\|3464118_3464952_+\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	6.22193e-20
NZ_CP009360.2\|WP_009978008.1\|3454692_3455238_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	8.69567e-63
NZ_CP009360.2\|WP_024637394.1\|3442598_3442925_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.34624e-10
NZ_CP009360.2\|WP_033717278.1\|3459307_3462535_-\|carbamoyl-phosphate-synthetase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	1.18699e-162
NZ_CP009360.2\|WP_023870835.1\|3449149_3450826_-\|RNase-J-family-beta-CASP-ribonuclease	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP009360.2\|WP_003875197.1\|3447018_3447333_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	5.61161e-25
NZ_CP009360.2\|WP_033718091.1\|3450845_3451748_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	1.32736e-146
NZ_CP009360.2\|WP_009978009.1\|3455234_3456035_-\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_CP009360.2\|WP_003875187.1\|3456077_3456818_+\|hypothetical-protein	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	8.58192e-54
NZ_CP009360.2\|WP_023861132.1\|3448168_3449041_+\|SAM-dependent-methyltransferase	gnl\|CDD\|272862	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c., methyltransferase, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. [Unknown function, Enzymes of unknown specificity].	4.6686e-76
NZ_CP009360.2\|WP_033718089.1\|3453888_3454623_-\|cell-division-protein-DivIVA	gnl\|CDD\|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	5.15837e-06
NZ_CP009360.2\|WP_023870836.1\|3447332_3448163_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|274889	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase. Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. All members occur in genomes that encode a cassette for the biosynthesis of mycofactocin, a proposed electron carrier of a novel redox pool. Characterized members of this family are described as NDMA-dependent, meaning that a blue aniline dye serving as an artificial electron acceptor is required for members of this family to cycle in vitro, since the bound NAD residue is not exchangeable. See EC 1.1.99.36. [Unknown function, Enzymes of unknown specificity].	2.5317e-142
NZ_CP009360.2\|WP_003875199.1\|3443692_3444235_+\|amino-acid-N-acetyltransferase	gnl\|CDD\|236132	PRK07922, PRK07922, amino-acid N-acetyltransferase.	6.98687e-116
NZ_CP009360.2\|WP_033718289.1\|3444327_3446652_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.58031e-177
NZ_CP009360.2\|WP_003878641.1\|3451791_3452544_-\|thymidylate-synthase-(FAD)	gnl\|CDD\|234847	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed.	2.15343e-100
NZ_CP009360.2\|WP_003875200.1\|3443054_3443627_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	9.40248e-33
NZ_CP009360.2\|WP_033712676.1\|3456806_3458009_-\|glycosyltransferase	gnl\|CDD\|340817	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins. This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.	2.66487e-57
NZ_CP009360.2\|WP_033712672.1\|3462531_3464055_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	2.81848e-133
NZ_CP009360.2\|WP_033712675.1\|3458069_3458849_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	9.12382e-124

>NZ_CP009360.2|WP_003878641.1|3451791_3452544_-|thymidylate-synthase-(FAD)
MAEIAPLRVQLIAKTDFLAPPDVPWSTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYIKHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPENDSRVVVPPGLDDDPELQQILAAAADASRATYTELLARLEAKFADQPSAVLRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRRLADVAPAVFADFEIATLADGTEVATSPLATEA
>NZ_CP009360.2|WP_033718091.1|3450845_3451748_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSTVGFDAPARLGTVLTAMVTPFASDGSLDTAAAARLANHLVDSGCDGLVVSGTTGESPTTTDDEKRELLRVVLEAVGDRARVIAGAGTYDTAHSVRLAKACAAEGAHGLLVVTPYYSKPPQRGLIAHFTAVADATELPVLLYDIPGRSVVPIESSTIRALASHPNIVGVKDAKADLHAGGQVIAETGLAYYSGDDALNLPWLAMGATGFISVISHVAANQLRELLSAFTSGDIATARKINATVAPLCDAMARLGGVTMSKAGLRLQGIDVGDPRLPQVPATPEQIEALTADMRAASVLR
>NZ_CP009360.2|WP_023870835.1|3449149_3450826_-|RNase-J-family-beta-CASP-ribonuclease
MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLILPDLRHIEDRLDDIEALVLTHAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHRLKPVFVEVSEGRKSTHGVFECEYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPLDGRPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFASNVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERVVLITTGTQGEPMSALSRMSRGEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTWRMLRANSKLAARTGVPEESILLAENGLSVDLVAGGASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQRGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENVTDPSRIAQGVRRTVGKWVGETYRRQPMIVPTVIEV
>NZ_CP009360.2|WP_023861132.1|3448168_3449041_+|SAM-dependent-methyltransferase
MARNPVAQTAFGPMVLAAVEQNEPPGRRLVDDDFAELFLPAPLRWLVGATRFAPVRHLMIRGSEFTGPGLWANLACRKRFIADKLKESLDDINAVVILGAGLDTRAYLLTRRVRIPVFEVDLPVNVARKFKTVRRVLGELPLSVRLVALDLEHDDLLTALAEHGYRTDYRVFFICEGVTQYLSEATVRRTLDGLRAAAPGSRLVFTYVRSDFIDGTNRYGTRTLYRNVRQRRQLWHFGLQPGEVADFLAEYGWRLVEQAGPDELMQRYVVPTGRKLKASQLEWSAYAEKT
>NZ_CP009360.2|WP_023870836.1|3447332_3448163_+|NAD(P)-dependent-oxidoreductase
MPRSSEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDVGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAAAWLVSDQARYITGVTLPVDAGFLNK
>NZ_CP009360.2|WP_003875197.1|3447018_3447333_+|antibiotic-biosynthesis-monooxygenase
MPVVVVATMTVKPESVDTVRDILTRAVEEVHDEPGCQLYSLHQSGETFVFVEQWADEEALKAHSTAPAIGKMFSAAGEHLDGAPDIKMLQPVPAGDPGKGQLRP
>NZ_CP009360.2|WP_033718289.1|3444327_3446652_-|DNA-translocase-FtsK
MAARGTGGAARSIGRARDIDPGHRRDGIALLLLGFSVVVAASSWFHAAGPVGAWVDTALRTFIGAGVLALPVVTAAVAVTLMRTEPDPDVRPRLILGAGLIALSVLGLRHLWSGSPGDPDARRRAAGFIGFAIGGPLSDGLTPWIAAPLLFIGFMFGLLLLTGTTIRELPVVMRNLFHTRFVEDYTDEDYTDEDYTDEDYGDEPYDYAGEFDDAAAQPEPEPAAWAPDDDAQAALQDDIPTVPEPAVKTGRGRKRGRAADNSDTIELDRVVEGPYVLPSLSLLVAGDPPKKRSAANNVMADAITEVLNQFKVDAAVTGCTRGPTVTRYEVELGPGVKVEKITALQKNIAYAVATESVRMLAPIPGKSAVGIEVPNTDREMVRLADVLTAPSTRRDHHPLVIGLGKDIEGDFISANLAKMPHLLVAGSTGSGKSSFVNSMLISLLARATPEEVRMILIDPKMVELTPYEGIPHLITPIITQPKKAAAALAWLVEEMEQRYQDMQASRVRHIDDFNAKVRSGEITAPLGSQREYRPYPYVVAIVDELADLMMTAPRDVEDAIVRITQKARAAGIHLVLATQRPSVDVVTGLIKTNVPSRLAFATSSLTDSRVILDQAGAEKLIGMGDGLFLPMGASKPIRLQGAFITDEEIQAVVAACKDQAEPEYTEGVTAVKTSSERADVDPDIGDDMDVFLQAVELVVSSQFGSTSMLQRKLRVGFAKAGRLMDLMETRGIVGPSEGSKAREVLVKPDELAGTLALIRGSGAGSADADGGDPD
>NZ_CP009360.2|WP_003875199.1|3443692_3444235_+|amino-acid-N-acetyltransferase
MPILLAVTESPQRYRPLVRRARTSDVPAIKELVDTYAGKILLEKNLVTLYEAVQEFWVAELPDSPGRVVGCGALHVLWSDLGEIRTVAVNPAMTGHGIGHAIVDRLLQVARELELKRLFVLTFETEFFGKHGFTEIEGTPVTAEVFEEMCRSYDIGVAEFLDLSYVKPNILGNSRMLLVL
>NZ_CP009360.2|WP_003875200.1|3443054_3443627_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MVGRANIANLANTLTLLRLVLVPVFLLALFAGDGHETGFRILAFLIFAFACITDRLDGLLARNYGMATEFGAFVDPIADKTLVGSALIGLSMLGELPWWITVLILAREFGVTVLRLAVIRRGVIPASWGGKLKTVVQVFAIGLFVLPWAGTPGPFRVGAAVVMGAAIVLTVITGIDYVVSTVREVRRTAA
>NZ_CP009360.2|WP_024637394.1|3442598_3442925_-|XRE-family-transcriptional-regulator
MPPLVREVIGDVLREARTTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDALDVPLSSVLTDAGERMASEERAAVAAPAGPSIDASTKVVIPPVASLALA
>NZ_CP009360.2|WP_033718089.1|3453888_3454623_-|cell-division-protein-DivIVA
MITEPVKTFSRKFMGYDTTAVDAHIEMLTAKQQLLIDDVESLRARLQESNEQTAALRKEVAALTDTSPAPHAVQQRMAKMLARAVDEVAEMQAEARAEADALIAAAEAEAQAAERRRDEVLADMAAQQEALEAEYRETKEKLDAELADMRAEAQAAIDEARRTAERECEQLLGDAKQGADHYRDTARRAVEEASAQRIKILEQLMSVYRELEDVPAALQAAYDEQQGSADDGVLAAVDGKVRAG
>NZ_CP009360.2|WP_009978008.1|3454692_3455238_-|dihydrofolate-reductase
MTRAEVGLVWAQSTSGVIGRGGDIPWNVPEDLTRFKEVTMGHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDFVAEGARVAGSLEAALAYAGSDPAPWVIGGAQIYLLALPHATRCEVTEIEIDLRRDDDDALAPALDDSWVGETGEWLASRSGLRYRFHSYRRDPRSSVRGCSPSRPS
>NZ_CP009360.2|WP_009978009.1|3455234_3456035_-|thymidylate-synthase
MPIPTPYEDLLRLVLDRGTAKSDRTGTGTRSLFGQQLRYDLSAGFPLITTKKVHLKSVVYELLWFLRGDSNVDWLHRHGVTIWDEWASDTGDLGPIYGVQWRSWPTPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIPRMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFVWTGGDCHIYDNHVEQVRLQLSREPRPYPELVLAHRDSIFDYTYDDVVVHNYDPHPAIKAPVAV
>NZ_CP009360.2|WP_003875187.1|3456077_3456818_+|hypothetical-protein
MPKITDSISTADGTCPVRLFFPDGSGPWPGVVMYPDAGGVRDTFDQMAAELAGFGYAVLLPDVYYRSGEWAPFDMATVFADQQERNRLFAMIGSVTPDRMATDAAAFFDYLAARPEVSGDRFGVCGYCMGGRTSLIVAGRLPDRVAAAASFHGGGLVTDSDDSPHLLADRMSATVYVGGAQDDASFTTDHAEQLDKALTAAGVRHTIEWYSAAHGFAVPDNAPYDPAAAERHWDAMRDVFAAALPR
>NZ_CP009360.2|WP_033712676.1|3456806_3458009_-|glycosyltransferase
MRVLLSAYDSRGGVQPLAALAVQLRALGVDARVSAPPDAEFAELLARAGVPLVAFGDSLRAMKTAATTPSEAQLRRQLDGLIAAQFDAAAAARECDALVVAGFPPAAAAARSAAEKQGAHYVYVSYQPTILPSPHYPPPGYADAAIDNRLLWQLDGRYMQALFGETLNARRAAIGLPPLDDLRGYALTERPWLATDPTLDPWRPPGDLDVVQTGAWLLADDRRLPAELDAFLDAGAPPVYVGFGSMPMRACRDVARVAIEAVRAQRRRAVVSRGWAGLGPIDDGEDCLVVGEVNHQALFGRVAAVVHHGGVGTLTAAALAGAPQVVVPQGADQPYWAARVAELGIGAAHDGPAPTVESLSAALGTALTERTRARAGAVAATIRTDGAARAARLLVARLAG
>NZ_CP009360.2|WP_033712675.1|3458069_3458849_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTSQDLTGRTAIITGASRGIGLAIAQQLAAAGANVVLTARKQEAADAAAAQVGPQALGVGAHAVDEDAARQCVRLTLERFGSVDILVNNAGTNPAYGPLIEQDHARFAKIFDVNLWAPLLWTSLAVKSWMGEHGGSIVNTASIGGLHQSPAMGMYNATKAALIHVTKQLALELSPRVRVNAIAPGVVRTRLAEALWKDHEDPLSSSIALGRIGEPIDVAAAVAFLLSDAASWITGETLVIDGGTVLGAAQGFRPAPTPS
>NZ_CP009360.2|WP_003875184.1|3458968_3459295_+|hypothetical-protein
MKPLVVAAAAAAAIAAAPAAAADVIVAGPAGPAAPTHITFKDDPGGGGCDANGNCGSGGQDQGPGGGPGGQGCVPGVGCGSGGQFAGPGGVPGGQGCLPGVGCGSGHA
>NZ_CP009360.2|WP_033717278.1|3459307_3462535_-|carbamoyl-phosphate-synthetase
MTASLLVANRGEIALRIIRTATELGMRTVAVYAADDAHSPHVHAADEAMPLPGSGPPAYLNQAALLAVAENTGATLIHPGYGFLSENAEFAEACAAARRTFVGPDARVLELLGNKTAARRAAIAAEVPTLAATAGPSGVEDIEAFFAAHPGGIMIKALAGGGGRGMRKVHNAAQIAGAYQRCAAEARLGFGDPALFAEALLGDARHIEVQVVAAPAGHQTHALAVGDRDCSIQRRYQKLIEIAPAQGLSEELRRALHQAAVRLCARVGLRGLATVEFLVSGEQFVFLEVNPRIQVEHTVTEQTTGLDLVAVQLAIAGGESYYRLGLPAGIASDGTEVIGEPATQRGIAIQLRVNAETFGPDFSVLPSAGTLTAFCPPSGPGVRVDTYGRPGLVVSPQYDSLLAKVIVAVHGSSWRAAMRKADTALSEFGVEGVATNIGFLRRLLAEQRLETGWVNTDFVDDKLPELAAAALTHQPGPQPGAVELYPGEDALRAQLAGTVVEVAPEGADYPAGAQLVVLEAMKMQHVLAAPDALRTVRVLVTPGQVVGTGDPLLVFTRTTGGDDGESVTAATDLDLTRADLDEVIERHARTLDEGRPDAVAKRHRQGRRTARENIDDLVDPGSFVEYGALAIAAQRSRRSEEDLIANTPADGLVAGLATVGADRFGRAAAQAVVASYDYTVLAGTQGMRNHAKTDRVFDLAARKRLPVVLFAEGGGGRPGDTDVGGAAGLDVPTFRMLAGLRGRVPLVSVVSGRCFAGNAALAGVCDVIIATPDANIGMGGPAMIEGGGLGVYPPEAIGPIAVQRRNGVVGLVARDEAHAVSLAKQYLSYFQGRLDRWQAPDPRVARHVVPQNRLRAYDVHRAIEAIVDVGSVLELRPDYGVGIVTALVRVEGVPYGLIANSTHHLGGAIDAEAADKAGDFLALCESFGLPVISLCDTPGFMVGPDAETQAAVRRFGRMFVLGARLTVPLGMIILRKGYGLGAMAMAGGSFRAPQFTVAWPTGEIGGMGLEGAVRLGYRKELAAVTDPAERQNLFDRLVAAAYQHGKALRAATTFELDDVIDPAASRAWITRLSGG
>NZ_CP009360.2|WP_033712672.1|3462531_3464055_-|long-chain-fatty-acid--CoA-ligase
MIEIAREHNPFPTTGVSRGRDGIPRYDELPATLVDMLADQVDARPDSEAVVELGGGRLTYRQLWDRAARVAGGLRADGLRRGDRVAVRYPAGIDWVLAFWGTVLAGGVAVAVNTRSAQPEVDFVLSDSGARLQLAPGRPLPDGKPYVTEQLGAADTAALFYTSGTTGHPKGVPTTHEAFLTNTENAIRCLQQPRDLGEDMRTLISVPLFHVTGCNSQLLAAARLGGASVILPALDLDALLNAVVAERVSVMVTVPAIYALLLRHKDFAGTDVSRVRWVGYGGAPIAPSLVRTVKDAFPHATVFNGYGMTETASLMTVLPDREAVEHADSVGYAVPSVDLGLIPFGDNEPGVGELVTRGGNVTAGYWNRPQATASTFAGGWLHTGDVVRVDDAGRVHIIDRLKDIINRGGENVSSVEVEAVLLGAPGVADACVLGVPDDVMGEKVGAVLFGDDDIDVPAVLEHCRGRLADFKVPQYITVVDGPLPRNAGGKLLKARLRDQVRWGDPLR
>NZ_CP009360.2|WP_031343821.1|3464118_3464952_+|thioesterase-family-protein
MTIEDPAIMPEAFFTVDGDSYIPGTMTRGPWGAAMGGQIVGGLLGWGIEQSGIDPDLQPARFTVDLLRPALLAPVQIRTSVQREGRRIKLVDAGLVQNGVVVARASALFLRRGDHPDGQVWSPPVQMPPLPTSSEGFPADMPFLIWGYGATRAGSPGIAAGEWEQAHSQKFAWARLFRPMVHGHPLTPFTRLAFVGDITSSLTHWGTGGLRYINADYTVTASRLPDGEFLGLAAQSHYGTAGVAAGAATLFDRHGPLGTSSALALAQPADAFQPTYT

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Crispr_ID: NZ_CP009360_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_9

4600792-4600936

Orphan

Consensus_repeat	Method
CGCATCGTCGCCGGGCCTAAGCTGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009360_9

>merge|NZ_CP009360|9|4600792-4600936|CRISPRCasFinder
CGCATCGTCGCCGGGCCTAAGCTGGATCGCCCGACTCCTCCTCACGCCGCCGCGGCGGCGCGCATCGTCGCCGGGCCTAAGCTGGCGCTCATGCGAATCGCGCTGGCGCAGATCCTCAGCGGCACCGACCCCGCGGCGAACCTGG

>NZ_CP009360|9|9|4600792-4600936|CRISPRCasFinder
CGCATCGTCGCCGGGCCTAAGCTGG	ATCGCCCGACTCCTCCTCACGCCGCCGCGGCGGCG
CGCATCGTCGCCGGGCCTAAGCTGG	CGCTCATGCGAATCGCGCTGGCGCAGATCCTCAGC
GGCACCGACCCCGCGGCGAACCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_010950184.1\|4607015_4607723_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009360.2\|WP_003873729.1\|4600214_4600739_+\|DUF2505-domain-containing-protein	unknown	unknown	gnl\|CDD\|378476
NZ_CP009360.2\|WP_075362347.1\|4604867_4605050_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_023866989.1\|4596923_4597673_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP009360.2\|WP_010950189.1\|4597656_4598997_-\|transpeptidase	unknown	unknown	gnl\|CDD\|380079
NZ_CP009360.2\|WP_044544206.1\|4594072_4595347_-\|D-inositol-3-phosphate-glycosyltransferase	unknown	unknown	gnl\|CDD\|132490
NZ_CP009360.2\|WP_009979325.1\|4607858_4608725_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|367049
NZ_CP009360.2\|WP_010950187.1\|4603871_4604135_-\|DUF2516-domain-containing-protein	unknown	unknown	gnl\|CDD\|378483
NZ_CP009360.2\|WP_031344807.1\|4604247_4604865_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP009360.2\|WP_033721181.1\|4601702_4602761_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP009360.2\|WP_003873718.1\|4590638_4591322_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP009360.2\|WP_023862175.1\|4599069_4600188_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237552
NZ_CP009360.2\|WP_044544207.1\|4595410_4596745_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP009360.2\|WP_033721182.1\|4602773_4603445_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP009360.2\|WP_003873723.1\|4593566_4594076_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|371210
NZ_CP009360.2\|WP_009979323.1\|4605569_4606880_-\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|225347
NZ_CP009360.2\|WP_003873735.1\|4605069_4605486_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009360.2\|WP_044544205.1\|4592765_4593515_-\|phosphoglyceromutase	unknown	unknown	gnl\|CDD\|184519
NZ_CP009360.2\|WP_033721183.1\|4603441_4603867_-\|DUF2599-domain-containing-protein	unknown	unknown	gnl\|CDD\|378494
NZ_CP009360.2\|WP_099156405.1\|4591371_4592601_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_010950184.1\|4607015_4607723_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.03924e-11
NZ_CP009360.2\|WP_003873729.1\|4600214_4600739_+\|DUF2505-domain-containing-protein	gnl\|CDD\|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	9.25272e-52
NZ_CP009360.2\|WP_003873735.1\|4605069_4605486_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.72194e-13
NZ_CP009360.2\|WP_023866989.1\|4596923_4597673_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.46537e-89
NZ_CP009360.2\|WP_010950189.1\|4597656_4598997_-\|transpeptidase	gnl\|CDD\|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	2.24135e-76
NZ_CP009360.2\|WP_044544206.1\|4594072_4595347_-\|D-inositol-3-phosphate-glycosyltransferase	gnl\|CDD\|132490	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.	0
NZ_CP009360.2\|WP_009979325.1\|4607858_4608725_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|367049	pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.	2.52088e-151
NZ_CP009360.2\|WP_010950187.1\|4603871_4604135_-\|DUF2516-domain-containing-protein	gnl\|CDD\|378483	pfam10724, DUF2516, Protein of unknown function (DUF2516). This family is conserved in Actinobacteria. The function is not known.	2.37829e-23
NZ_CP009360.2\|WP_031344807.1\|4604247_4604865_-\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.20271e-10
NZ_CP009360.2\|WP_033721181.1\|4601702_4602761_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.02709e-07
NZ_CP009360.2\|WP_003873718.1\|4590638_4591322_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.24005e-94
NZ_CP009360.2\|WP_023862175.1\|4599069_4600188_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237552	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP009360.2\|WP_044544207.1\|4595410_4596745_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.00851e-37
NZ_CP009360.2\|WP_033721182.1\|4602773_4603445_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	2.63544e-99
NZ_CP009360.2\|WP_003873723.1\|4593566_4594076_-\|YbjN-domain-containing-protein	gnl\|CDD\|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	4.21652e-22
NZ_CP009360.2\|WP_009979323.1\|4605569_4606880_-\|DUF445-domain-containing-protein	gnl\|CDD\|225347	COG2733, COG2733, Predicted membrane protein [Function unknown].	0
NZ_CP009360.2\|WP_044544205.1\|4592765_4593515_-\|phosphoglyceromutase	gnl\|CDD\|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	0
NZ_CP009360.2\|WP_033721183.1\|4603441_4603867_-\|DUF2599-domain-containing-protein	gnl\|CDD\|378494	pfam10783, DUF2599, Protein of unknown function (DUF2599). This family is conserved in Actinobacteria. The function is not known.	2.91354e-44
NZ_CP009360.2\|WP_099156405.1\|4591371_4592601_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	3.50715e-68

>NZ_CP009360.2|WP_003873729.1|4600214_4600739_+|DUF2505-domain-containing-protein
MPRSFDLSAHYDGSVDEVHRAFTDADYWRARLASSGVDVATLESMRVGGQSGDEDVVEVVTLQVIRSDKLPGMVTQLHSGDLCIRREETWGPVTGGTATGSVVGSIVDAPVNLAGDAVLEPAEDTGGARLTFRATVQVRVPIIGGKLENFIGARLAELIAAEQRFTTEWIAQTA
>NZ_CP009360.2|WP_023862175.1|4599069_4600188_-|UDP-N-acetylmuramate-dehydrogenase
MKSSGAGAAFAGASVADAAPLAPLTTLRVGPTARRLITCASSEQLIATLRRLDTERLAGQRDPVLVFAGGSNLVISDALSDLTAVRLANDGITVEGNLVRAQAGAVWDDVVLTAIEHGLGGLECLSGIPGSAGATPIQNVGAYGAEVSDTLTRVRVLDRGSGQVRWVPGTELEFGYRTSVFKRRADDGLEIPSVVLEVEFALDASGRSAPVRYGELAAELKVPVGERADPRAVREAVLALRARKGMVLDAADHDTWSVGSFFTNPVVAPDVYERLAGSVDGPVPHYPAPGGVKLAAGWLVERAGFGKGYPVPDPGGPEAPCRLSTKHALALTNRGTARSDDVIALARTIRDGVRSVFGITLVPEPVLLGCRL
>NZ_CP009360.2|WP_010950189.1|4597656_4598997_-|transpeptidase
MIFVTPSSAPRPFNRRVALATLGIGALAPGVLAACGGGTAKEAEKKEQPALRLKYQPADAAQNVVPTAPVSVEVSDGWFQHVTLSNSSGKAVAGTFNSDRTVYTTTEPLGYDQTYTWSGSAVGHDGKTVAVAGKFSTVSPSKKISGAFQLADGQTVGIAAPIILQFDAPISDKAAVEKALTVTTNPPVEGSWAWLPDEAQGARAHWRTREYYPAGTTVNVQAKLYGLPFGDGAYGAEDISLNINIGRRQIVKAEVSSHRIQVIRDEGVIMDFPCSYGEADKARNVTRNGIHVVSEKYADFYMSNPAAGYSHVHERWAVRISNNGEFIHANPASAGAQGNTNVTNGCINLSTSDAEQYYQSAIYGDPVEVTGSSIQLSYADGDIWDWAVDWDTWVAMSALPPPTAHPPSTQIPVTAPVTPSNAPTLSGTPTTSTTTPASTGPATPGG
>NZ_CP009360.2|WP_023866989.1|4596923_4597673_+|SDR-family-oxidoreductase
MVGTGRNERVAVVTGASSGIGEATARTLAAQGFHVVAVARRAERIHALANEIGGTAIVADVTDDAAVAALASKLSRVDVLVNNAGGARGLEPVAEADLEHWRWMWETNVIGTLRVTRALLPKLVDSGDGLIVTVTSVAALEVYDGGAGYTAAKHGQGALHRTLRGELLGKPVRLTEIAPGAVETEFSLVRFDGDQQRADAVYTGITPLVAADVAEVIGFVASRPAHVNLDLVVMKPRDQASASRFNRRG
>NZ_CP009360.2|WP_044544207.1|4595410_4596745_-|ROK-family-protein
MRTNTLTHPHHSPGRAVGHAPGPKPHRAVRRQIVPPALHIPESAAASVFRAVRLRGPVGRDVIANVTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNPAGPALASLADSARRYLRRWHRRRPLWIGVAIGGTVDSVTGQVDHPRLGWRQAPVGRVLADALGLPVSVASHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYALVIGGRVHVPTSGPGTIATLPAHSELLGGTGQLESTVSDEAVVAVARQLRILPFAPANRASGSAAGIADLLRVARAGNEQARELLAERGRVLGEAVALLRDMLNPDELVVGGQAFTEYPEAMEQVEAAFAARSVLGPRDIRLTAFGNRVQEAGAGTVSLSGLYADPLSAMRRAGALDARLREVARDESSA
>NZ_CP009360.2|WP_044544206.1|4594072_4595347_-|D-inositol-3-phosphate-glycosyltransferase
MRHDDVFRLNEPRRVAVLAVHTSPLAQPGTGDAGGMNVYVLQTALHLARRGIEVEIFTRATASADPPVQRVVPGVLVRNVVAGPFEGLDKYDLPTQLCAFAAGVLRAEASHEPGYYDIVHSHYWLSGQVGWLARDRWAVPLVHTAHTLAAVKNAALAQGDSPEPPLRTVGEQQVVDEADRLIVNTDDEARQLISIHHADPARIDVVHPGVDLDVFRPGDRRAARAALGLSLDEDIVAFVGRIQPLKAPDIVLRAAAKLPGVRIVVAGGPSGTGLASPDGLARLADELGISARVTFLPPQSRPNLATLFQAANLVAVPSYSESFGLVALEAQACGTPVAAAAVGGLPVAVRDGVTGTLVAGHDVDHWADALAGLLRAPAPAAAAMSRAAAAHAATFSWDHTTDALLASYRRAIREYTTERRGVGA
>NZ_CP009360.2|WP_003873723.1|4593566_4594076_-|YbjN-domain-containing-protein
MSATVERVIEDTLQASGLTYSKHAGAHGGPSGLVVELPGERKLKTNTILSVGEHSVRVEAFVCRKPDENHEGVYRFLLKRNRRLYGVAYTLDNVGDIYLVGRMSLASVSGDEIDRVLGQVLEAVDSDFNTLLELGFRSSIQKEWEWRVSRGESLKNLQAFAHLIDDDEG
>NZ_CP009360.2|WP_044544205.1|4592765_4593515_-|phosphoglyceromutase
MGETATLVLLRHGESEWNSLNLFTGWVDVGLTAKGRAEAVRSGELLAEQGLLPDVLYTSLLRRAITTAHLALDAADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSTYSQDADPRYADIGGGPLTECLADVVVRFLPYFTDVIVPDLRSGKTVLIVAHGNSLRALVKHLDQMSDDDVVGLNIPTGIPLRYDLDARLRPLVPGGTYLDPEAAAAGAAAVASQGRG
>NZ_CP009360.2|WP_099156405.1|4591371_4592601_-|two-component-sensor-histidine-kinase
MTVFSALLLAGVLSVLALAAGVAVGTRLSPRAAQRRQRISTEWTGITVAQMLERIVALMPLGAAVVDAHRDVVYLNDRAKELGLVRDRQLDDQAWEAAQQALTGVDVEFDLRPAKRSGGRAGLSVHGQARLLSEEDRRFAVVFAHDQSDYARMEATRRDFVANVSHELKTPVGAMALLAEALLASADDSETVRRFAEKVLVEANRLGDMVAELIELSRLQGAERLTNVTEVDVDSVVNEAISRHKVAADNANIEVRTDAPSGLRVLGDETLLVTALANLVSNAIAYSPPGSPVSISRRRRGDNIEIAVTDRGIGIALEDQERVFERFFRGDKARSRATGGSGLGLAIVKHVAANHNGTIGVWSKPGTGSTFTLSIPAAVAPDRGDGESEQPQGREVRPNRSQREEELSR
>NZ_CP009360.2|WP_003873718.1|4590638_4591322_-|DNA-binding-response-regulator
MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG
>NZ_CP009360.2|WP_033721181.1|4601702_4602761_+|DUF2993-domain-containing-protein
MTNPQGPPNQDPSTWGRPANQGPYGQPPTERPTERINTGGPGQAPGQVPPPPPAPAPPPPGQTERFGTPRPQMQQPGYPPPPTPPAGPTERLATAPNPDNGPAKKKRRFLRDPVSVLLIFIIVFALLIAGFIGAELYVRHVADTKVAQAVACEVKDQATASFGVTPLMLWQQATKHYTNISVQTAGNNIRDAEGMKLSININDVRLKDNGNSKGTIGALDATIDWTTDGIKQSVQNAIPVLGPFVTNTVTTHPADGTIELKGMLDNITAKPVISGTGLQLQIVSFNALGFTMPKESVQSTLDDFTSNLTKNYPLGIHADSVQVTDKGVTSHFSTRNAAIPTGNNNDPCFANL
>NZ_CP009360.2|WP_033721182.1|4602773_4603445_-|deoxyribose-phosphate-aldolase
MTPTRAQLAAFVDHTLLKPEATAADVAALVTEAAELGVYAVCVSPPMVPAAVQAGAGVRVASVAGFPSGKHLPAVKAHEAALAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRGAVGDAVLKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTSTGFHPTGGASVRAVALMAEAVGGRLGVKASGSIRTAADALAMLDAGATRLGLSGTRAVLDGLG
>NZ_CP009360.2|WP_033721183.1|4603441_4603867_-|DUF2599-domain-containing-protein
MRVPLAAPAALLLALCWPIAPAAAPDPGAGTADPPFIDHTEWAQWQGRSSLRVFPTPAGRTAAKTPGSMAMADEAWTEVLALAPDADTAGMRAQFLCHWQFAELGRPGKVSWNLEPWRPVVDDAEMVASGCNPGGPEESFG
>NZ_CP009360.2|WP_010950187.1|4603871_4604135_-|DUF2516-domain-containing-protein
MLVLQIAVLVTAIYAFVHAALQRPDAYTAADKLTKPVWLLILGGAVALTSVLGYVFGVLGMAIAACAAGVYLVDVRPKLLEIQGKSR
>NZ_CP009360.2|WP_031344807.1|4604247_4604865_-|hypothetical-protein
MAENPNIDDLRAPLLAALGAADLALATVNDLIANLRERAEETRDETRTRVEERRARLTKFQEDLPEQFTELRDKFTTEELRKAAEGYLEAATNRYNELVERGEAALQRLRSQTAFEDASARAEGYVDQAVELTQEALGTVASQTRAVGERAAKLVGIELPGKAEAAGKKAQKAIAKAPAKKAPAKKAPAKKAPAKKAAAKKVTQK
>NZ_CP009360.2|WP_075362347.1|4604867_4605050_+|hypothetical-protein
MFLSWFLLCVFVRCLVGKLGANVSFATGAARSVGRSSCSWAGTARSLLWGNPRGRSSIHH
>NZ_CP009360.2|WP_003873735.1|4605069_4605486_-|XRE-family-transcriptional-regulator
MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASFTQQNEATHEECPTQPDSE
>NZ_CP009360.2|WP_009979323.1|4605569_4606880_-|DUF445-domain-containing-protein
MVAHRASGRTSFAESFAGADPQADAQRRVALRRMKAVALSFLIGATGLFLACRWAQAQPGVGAWVGYVGAAAEAGMVGALADWFAVTALFRHPLGIPIPHTAIIKRKKDQLGEGLGTFVRENFLSPEVVETKLRDAQVSGRLGKWLSEAAHAERVAGETATVLRVLVELLRDEDVQQVIDRMIVRRIAEPQWGPPVGRVLATLLAENRQEALIQLLADRAFQWSLNAGEVIQRVVERDSPTWSPRFIDHLVGDRIHRELMDFTDKVRRNPDHELRRSATRFLFEFADDLQHDPDTIARADAIKEQLMARDEIANAAATAWKTLKRLVLEGVDDPSSALRSRIADTVVRIGESLRDDADLRDKVDNWLVRAAQHLVSQYGVEITAIITDTIERWDAEEASRRIELHVGRDLQFIRINGTVVGSLAGLVIYAVAQLLF
>NZ_CP009360.2|WP_010950184.1|4607015_4607723_+|TetR/AcrR-family-transcriptional-regulator
MAEQITAASVKMDGRKRRWHQHKVDRRNELVDGTIDAIRRLGGALSMDEIAAEIGVSKTVLYRYFVDKNDLTTAVMMRFTQTTLIPNMAAALTSGLDGFDLTREVIRVYVETVANEPEPYRFVMSNSSASKSKVIADSERIIARMLAVLMRRRMQHAGMDTGGVEPWAYLIVGGVQLATHSWMSYPRMSRDELIDYLTMLSWNALKGIVEVGGSLEKFREEPHPSPIVPPREAAL
>NZ_CP009360.2|WP_009979325.1|4607858_4608725_+|class-I-SAM-dependent-methyltransferase
MSVQLTPHFGNVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLEEAQIAKIDLALGKLKLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAEHVQKTFDAMDTPRTRRVLLEGWEKFHEPVDRIVSIGAFEHFGRQRYGRFFRMAYDVLPPGGIMLLHTIVRPSFKDARAKGMKLTHEIVEFSRFILAEIFPGGWLPTPQTVGEYGVTAGFDLTRVQSLQLHYARTLDLWAQALEANREQAIAIQSQEVYDRYMKYLTGCAKLFREGYTDVNQFTMEKK

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Crispr_ID: NZ_CP009360_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009360_10

4961345-4961421

Orphan

Consensus_repeat	Method
GCGCGCCCATGGCGCTCGTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009360_10

>merge|NZ_CP009360|10|4961345-4961421|CRISPRCasFinder
GCGCGCCCATGGCGCTCGTCGCGCCCCTCAGGGGCCGACGGTTCGGCTTGCTCCTCGCGCCCATGGCGCTCGTCGCG

>NZ_CP009360|10|10|4961345-4961421|CRISPRCasFinder
GCGCGCCCATGGCGCTCGTCGCG	CCCCTCAGGGGCCGACGGTTCGGCTTGCTCC
TCGCGCCCATGGCGCTCGTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009360.2\|WP_011726379.1\|4952401_4953826_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP009360.2\|WP_019732227.1\|4950701_4951592_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP009360.2\|WP_011726382.1\|4957010_4957982_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP009360.2\|WP_003874130.1\|4964597_4965638_-\|virulence-factor-Mce-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009360.2\|WP_033721296.1\|4968930_4970517_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|169098
NZ_CP009360.2\|WP_011726381.1\|4955007_4955673_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP009360.2\|WP_023860791.1\|4971870_4972356_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP009360.2\|WP_009979731.1\|4955737_4956493_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP009360.2\|WP_011726383.1\|4957978_4958680_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_003874163.1\|4966944_4967814_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NZ_CP009360.2\|WP_003874126.1\|4958649_4960200_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NZ_CP009360.2\|WP_085978618.1\|4953905_4955015_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378342
NZ_CP009360.2\|WP_003874167.1\|4971386_4971827_-\|cyclase	unknown	unknown	gnl\|CDD\|176861
NZ_CP009360.2\|WP_071321512.1\|4965634_4966939_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|378749
NZ_CP009360.2\|WP_003874123.1\|4956459_4957014_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009360.2\|WP_011726386.1\|4961425_4963039_-\|virulence-factor-Mce-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009360.2\|WP_011726378.1\|4951617_4952343_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP009360.2\|WP_011726387.1\|4963035_4964601_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009360.2\|WP_003874164.1\|4967815_4968631_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NZ_CP009360.2\|WP_023860792.1\|4972370_4973483_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176241

Protein	Function_ID	Function_description	E-value
NZ_CP009360.2\|WP_011726379.1\|4952401_4953826_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	3.88614e-50
NZ_CP009360.2\|WP_019732227.1\|4950701_4951592_+\|hypothetical-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.38202e-17
NZ_CP009360.2\|WP_011726382.1\|4957010_4957982_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	3.7495e-13
NZ_CP009360.2\|WP_003874130.1\|4964597_4965638_-\|virulence-factor-Mce-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	4.72889e-88
NZ_CP009360.2\|WP_033721296.1\|4968930_4970517_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|169098	PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP009360.2\|WP_011726381.1\|4955007_4955673_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	1.07876e-27
NZ_CP009360.2\|WP_023860791.1\|4971870_4972356_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	4.2543e-35
NZ_CP009360.2\|WP_009979731.1\|4955737_4956493_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00629665
NZ_CP009360.2\|WP_003874163.1\|4966944_4967814_-\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	9.52641e-81
NZ_CP009360.2\|WP_003874126.1\|4958649_4960200_-\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	2.307e-77
NZ_CP009360.2\|WP_085978618.1\|4953905_4955015_+\|hypothetical-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	0.000457806
NZ_CP009360.2\|WP_003874167.1\|4971386_4971827_-\|cyclase	gnl\|CDD\|176861	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	4.15327e-44
NZ_CP009360.2\|WP_071321512.1\|4965634_4966939_-\|MCE-family-protein	gnl\|CDD\|378749	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative. Mce4_CUP1 is a family of putative Mce4 transporters of cholesterol. The domain is found associated with pfam02470. The full TCDB classification for this family in conjunction with PF02470 is TC:3.A.1.27.4.	8.25767e-107
NZ_CP009360.2\|WP_011726386.1\|4961425_4963039_-\|virulence-factor-Mce-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	8.2028e-90
NZ_CP009360.2\|WP_011726378.1\|4951617_4952343_+\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.76718e-72
NZ_CP009360.2\|WP_011726387.1\|4963035_4964601_-\|MCE-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	6.91426e-82
NZ_CP009360.2\|WP_003874164.1\|4967815_4968631_-\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.098e-87
NZ_CP009360.2\|WP_023860792.1\|4972370_4973483_+\|alcohol-dehydrogenase	gnl\|CDD\|176241	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.91233e-149

>NZ_CP009360.2|WP_003874126.1|4958649_4960200_-|MCE-family-protein
MLTPFVRRQLVAFGILTVISLLVLGIYYLQIPSLVGIGRYTLKAELPASGGLYPTANVTYRGITIGKVTDVEPTEHGAEATMSIDSHYKIPIDAVANVHSVSAVGEQYLDLVSSGNPGKYLSSGQTITKGTVPAEIGPALDTANRGLAVLPKEKIGQLLDETAQSVGGLGPNLQRLVDATQAIVGDFKNQITDVNDIIEHSGPVIDSQVKSGDAIERWARNLNRLGAQSAQEDSHLKSLLRQAAPTADQVNDVFNDVRESLPQTLANLEVVIDLLKRYHTGVEQVLVFLPQGASIAQTVAAPFPNMAALDLALSINQPPPCLTGFIPASEWRSPADTSLQPLPTGTYCKIPMDTPANSVRGSRNIPCTDIPGKRAATPRECRDPKPYVPAGTNPWYGDPNQILTCPAPAARCDQPVKPGMVIPAPSVDNGLNPAPSDRVAGTPPPVSDPLSRPGSGTVQCNGQQPNPCVYKPSGPPTAVYSPQSGELVGPDGVKYSVENSTRTGDDGWKEMLAPAG
>NZ_CP009360.2|WP_011726383.1|4957978_4958680_-|hypothetical-protein
MEGDAGASRLNPIDTDDDSLSPQDKDEDSTAPASTDEQTGSQGAPGVAGESAPDDADDAVPVAAVPRGPSRLGRGWLAAIAAVLVLCAAGIGAGGYLALRYHHESQVIARNNAAALKAAVDCVEATQAPDTNAMTASEQKIIDCGTDAYRSQALLYTSMLVQAYQSANVHVQVSDVRAAVERNNPDGSIDILVALRVKVASDQSQNESGYRLRVKMALAEGQYKISKLDQVTK
>NZ_CP009360.2|WP_011726382.1|4957010_4957982_-|RDD-family-protein
MTVLVEQTATTGTPEPVREALAPWHSRVGAFAIDVAPGAAVIATMALVSFTVPARGVWWWVGVCVLGVVTLLVLVNRLLLPVITGWSLGRALAGIAVTPRTGAAPGPWRLLLRDLAHLLDTASIVGWLWPLWDSRRRTFADMLAGTEVRRLAPEQVPPHITRWAAAAVLGAAAVCLGGAAMSYGVVYSADRASDQTRAQIATQGPKIVAQMLTYDPKSLHDDFARAQSLATDKYRRQLQTQQDVVQKGNPVINEYWVTNSSIESASRDRATMLLFMQGRRGAAPEVRYISATVRVSFAKVGENTWRVDDLTVLTKPKPPGGAK
>NZ_CP009360.2|WP_003874123.1|4956459_4957014_-|hypothetical-protein
MSPRRKFAPGERPLLVARPVRPPRGWLLPLAGTAAALLMVTAVTLCALMLVSHESRERAASKDREVLSYVSGFMTQFTSIDPFHANDYVNRILAQATGDFAKQYEKNANEILLQVARAEPATGTVLDAGLERWNDDGSANVMVATAITTKSPDEKQVLENTNRWAATATQEGNQWKISSLQQVI
>NZ_CP009360.2|WP_009979731.1|4955737_4956493_-|hypothetical-protein
MEDQQPAAGDLTAEENPAADQNEATVAAAGDDRENGDAATESEAAKTSDAAPADGAEDSHSAETVETAGAAPAAGRRTKRLAGKAWAVAAMVAALLFVGSAGFAGAMVQPYLADRAVAATKLKVARTAANAITTLWTYTPENMDTLADRASAYLSGDFEAQYRKFVDAIVAPNKQAKITNHTDVTGAAVESLDDTNAVVIVYTNTTSTSPLTKNVPSLKYLSYRLFMKRAKSRWLVTRMTTITSLDLTPKV
>NZ_CP009360.2|WP_011726381.1|4955007_4955673_-|DUF1275-domain-containing-protein
MAALLLLTFATGLADAISILVLGHVFVANMTGNVIFLGFWLAPRTSIDLTAVVVALPTFACTTILSGRLARHFGERVRAWISTVLATEIVLLVGLSVLAGSGILSYQQDSKLLMIGILAVTFGLQHSSARQFGIQELSTTVLTSTIVSLGLDSRLAGGTGERQRLRIGVVATMCAGAFLGATMSRYVVAPVFVVAAAVIAASLLIFRFGPPAAKPSAAEAN
>NZ_CP009360.2|WP_085978618.1|4953905_4955015_+|hypothetical-protein
MHFMAERAIVLTRRASFRRLAACCTALSACLTLAVTSGQPLARAADGRDLLANAISSTRGSYLVYNFGPGHPAPMLNAGGSWYEMNNGGHLMIIKNAAGRLSPHLLVDTHQGDQARCENNPGARTAEGLWQASELYAPLQAWQRMGQPTIAINANFFDVRPQKGGSWRQTGCSSPLGAFVDNTNGRGRANQAVTGTVAYPGKQGLSGGGESWSALTTMILPSGGAPYVVWPKTKSDYDAATPVVADLLNKNEKFVAVSGIGLLAPGNTGQLHDGGPSAARTAIGYARQKDEMYIFEGGSYTPDNMQDLFRGLGSDNAVLLDGGGSSAIVLRRDTGGMWAGAGSPRGSCDTRQVLCDSHERALPSWLAFN
>NZ_CP009360.2|WP_011726379.1|4952401_4953826_+|YhgE/Pip-domain-containing-protein
MARSHPQHAAPNPNRNIKAVRTVRFWAAPLVITLALMSALCALYLGGILNPTTNLRHFPIAVVNEDAGPGGAQIVDRLATGLDRNKFDIRVLSRDEAKHQLDTGRVYGSLLIPPSFSSKLRDFATSAVSPARPDKPSITVSTNPRAGTLGASIAGQTLNSAMGTANGIAAQRVMAEVTAQTGGTPLPGATQAGLSSPIEIQSVVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMVLLGLLTSAVYLAIANGLGMPIDLSWELWAYGVFAIAAVGITSSSLLSVLGTAGMLVSMLVFVIFGLPSAGATVPLEATPPLFRWLAEFEPMHQVFLGTRSLLYFGGRGDAGLSQALTMTSAGLVIGLLLGGIVTHLYDRKGFHRIPGAVGFAIAQDHQAQHQARRGKSTQPPDSPVEPETPAEPESPDEPESPSAQT
>NZ_CP009360.2|WP_011726378.1|4951617_4952343_+|pirin-family-protein
MSAGFEIRRAATRAVTTTPWLTSRHSFSFGDHYDPDNTHFGLLLVNNDDIVSPGTGFDTHPHRDMEIVTWVLAGALAHQDSTGNRGVVYPGLAQRMSAGRGILHSERNDSPSLPVHFVQMWVIPDEAGIDPSYQQHEIDDTALGGGLVTIASGIRGHDAAISLHNRNAALHGARLPAAAAVDLPAAPYLHVFLARGRADIEDVGELHPGDAVRFTDTDGRRVTGLEPSELLIWEMHARLGG
>NZ_CP009360.2|WP_019732227.1|4950701_4951592_+|hypothetical-protein
MAKSIGETPSRSGVKSPPTARVMDVLAAVADSPGGLTSAELAKGCAISSSTCALVLAELERRAWVTRRDDRRYVLGSGLFGLVHGLREQFPLLDRGRDALRLLHERLGAGCSMSKIGARHLTTVDSVGHGTDGEHAVGQRFPIDPPFGLVAMAWRDDDAVQAWLRRVTPRLTRTEIAQHQRVLADIRARGYGAWRFDDTHRSLHNRLAEVLASLEPTAQVTRRLTTLMTMVTLRSVTDVLETELSTTEFVVLPIFGHDGQPEYQIEIHLGHSVGLTLPELDDALEQARRLLTAPVR
>NZ_CP009360.2|WP_011726386.1|4961425_4963039_-|virulence-factor-Mce-family-protein
MSTIFDIRNIRLPKLSRTSVILGALVIVLALVVGYVGWRLYEKLTNNTVVAYFPAANALYPGDKVQIMGLRVGAIDKIEPSGDKMKVTFHYQNKYRVPANASAVILNPTLVASRAIQLEPPYKGGPVLADNAVIPEERTQVPVEWDQLRNSITNIISKLGPTAEQPKGPFGEVIESFADGLAGKGKQFNTTLTNLSRALTALNEGRGDFFAVVRSLALFVNALHQDDQQFVALNQNLADFTTRLAHSDGDLANAIEQFDSLLTTVRPWLDKNRGVLTYDVKNLETATNALLQPDPLNGLETALHVLPTAAANINQIYHPSHGSVVAIPSITNFANPMQFICSAIQAGSRLGYQESAELCAQYLAPILDAIKFNYPPFGLNLFSTAETLPKEVAYSEPRLQPPNGYKDTTVPGIWVPDTPTSHRNTQPGWIVAPGMQGQQVGPITAGLMTPDSLEELMGGPNIAPVQSNLQTPPGPPNAYDENPILPPMGLNAPVPIPPPPPGPGVAPGPVAPTPAPVSAPAPNAGGPAAPADFGGGQ
>NZ_CP009360.2|WP_011726387.1|4963035_4964601_-|MCE-family-protein
MRTLEPPNRVRIGLMGIVVTVLVIGVGQSFTSVPMLFAKPSYYGQFTDSGGINTGDKVRIAGMDVGKVEGLKIDGDHIVVKFSIGTNTIGTESRLAIKTDTILGKKILDVEARGSQQLRPGSTLPLGQSTTPYQIYDAFFDVTKAAQGWDIETVKQSLHVLSQTIDQTYPHLSPALDGVAKFSDTIGKRDEQVKHLLAQANQVASVLGDRSDQIDRLLVNTKTLLAAFNERGQAINALLGNIAAFSEQVKGLINDNPNLNHVLEQLRTVSDILVQRKDDLANGLTEVGKFLPSLNEAIASGPFFKVVLHNLALYQISQPWVDAAFKKRGIDPEDFWRSAGLPAYRFPDPNGTRFPNGAPPPAPPVLEGTPDHPGPAVPPGSPCSYTPAADGLPRPDNPLPCAGAVTGPFGGPGFPAPVDVMTSPPNPAGLPPTPGIPIAGRPGDAPPDVPGTPVPLPTQAPPGARTENLAPAGPVPPPSTFAPGLPPGPPAPPGPGNQLPAPFINPGGTGGSGAAGGGSQN
>NZ_CP009360.2|WP_003874130.1|4964597_4965638_-|virulence-factor-Mce-family-protein
MKITGTLVRLSIFSVVLLIFTVMIIVVFGQMRFDRTNGYSAEFSNISGLRAGQFVRASGVEVGKVSSVQLVDGGKRARVEFNVDRSVPLYQSTTAQIRYLDLIGNRYLELKRGQGEGADKVLPPGGFIPLSRTQPALDLDALIGGFKPLFRALDPQKVNTIATALVTVFQGQGGTINDILDQTAQLTSQLGERDQAIGEVIKNLNTVLDTTVRHRQQFDQTINNLEVLITGLKDHGDQLAGGTAHISNAAGTVADLLAEDRSLLHKTLNYLDAVQQPLIDQQDQLQDYLKKVPTALNMIGRAIGSYGDFVNFYACDITLKINGLQAGGPVRTVRLFQQPTGRCTPQ
>NZ_CP009360.2|WP_071321512.1|4965634_4966939_-|MCE-family-protein
MARPVQTNAPRTPPYKLAGLAILVVGALALTLIYGQFRGNFTPKTSLTMLASRAGLVMDPGSKVTYNGVEIGRVGTISETVRDGKPAAKFTLEVYPRYLKLIPSNVNADIKATTVFGGKYVSLTTPAHPSPQKITPHTIIDARSVTTEINTLFQTITSIAEKVDPVKLNLTLSAAAQSLSGLGEKFGQSVVNANALLDDVNPRMPQARKDVQGLAALGDTYADASPDLFDFLNNAVITSRTINAQQKDLDQALLSAAGFGNTGADLFNKGGPYLARGAQDLVPTAQLLDTYSPELYCTLHNYHDIVPITGASEGGFNGYSLNMNTEVTSGLGLLLNPVATIPVLASLVGGIAGLVGGAPNPYIYPENLPRVNARGGPGGAPGCWQPITHDLWPAPELVMDTGNSLAPYNHLDTGSPYAIEYVWGRQVGDNTINP
>NZ_CP009360.2|WP_003874163.1|4966944_4967814_-|ABC-transporter-permease
MSTAAVFRSRFPRAAENLNRYGLAAARGLDDVGQMAWFGGVALAHIPHALSHYRKETLRLIAQIGMGTGAMAVIGGTVAIVGFVTLSGSSLVAIQGFASLGNIGVEAFTGFFAALINVRIAAPVVTGIAMAATVGAGATAELGAMRISEEIDALEVMGIKSISFLATTRIMAGLVVIIPLYALAMIMSFLSPQITTTVLYGQSNGTYEHYFRTFLRPDDVFWSFLEAIIITAVVMITHCFYGYNAGGGPVGVGEAVGRSMRFSLVSVQVVVLAAALALYGVNPNFALTV
>NZ_CP009360.2|WP_003874164.1|4967815_4968631_-|ABC-transporter-permease
MTSTSTSRRGPYLVGYLRDQLETPLTLVGGFFRMCVLTGKALFRWPFQWREFVLQCWFIMRVAFLPTIMVSIPLTVLLIFTLNVLLAQFGAADLSGAGAAIGAVTQLGPLTTVLVVAGAGSTAICADLGARTIREEIDAMEVLGIDPIHRLVVPRVIAATLVATLLNGLVITVGLVGGYLFGVYLQNVSGGAYLATLTTITGLPEVVIATVKAAVFGLIAGLVGCFRGLTVRGGSKGLGTAVNETVVLCVVALYAVNVVLTTIGVRFGTGH
>NZ_CP009360.2|WP_033721296.1|4968930_4970517_-|long-chain-fatty-acid--CoA-ligase
MTAQLAHHPTQANEQPYLSRRQNWVNQLERHALMQPNATALRFLGKGLTWGELHGRVRALADALSRRGVGFGDRVMVLMLNRPEFMESVLAINMLGAIAVPLNFRLTAAEIAFLVQDCQARVVITEAVLAPVATGVRDIESLLDTVVVAGGSSDDAVLGYDDLIDETGAAHQPVDIPNDAAALIMYTSGTTGRPKGAVLTHTNLTGQTMTGLYTNGADINNDVGFIGVPFFHIAGIGNMLTGLLLGIPTVIYPLGAFEPGQLLDVLAAEKVTGIFLVPAQWQAVCAEQRARPRDLKLRVISWGAAPAPDALLREMSAMFPGTQILAAFGQTEMSPVTCMLLGEDAIRKRGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRMDEDGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRAHEKWGEVPIAVAAVANDNLSLEDLDEFLTERLARYKHPKALEIVDALPRNPAGKVLKTELRIRYGGG
>NZ_CP009360.2|WP_003874167.1|4971386_4971827_-|cyclase
MPVLSKTVEVNTDAAAIMAIVADFERYPEWSDGVTGCWVLARYDDGRPSQLRLDAAYQGFEGVYIQAVYYPGPNQIQTVMQQGELFKKQEQLFSVVEMGASSLLTVDIDVEPSMPVPAPMVKSMLNNVLDHLADNLKQRAEQLAAN
>NZ_CP009360.2|WP_023860791.1|4971870_4972356_-|acyl-CoA-thioesterase
MASAPVVPPAPEGLTSNDFPVLWPVATRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGLDPLTTPALGIVAESGCRYLSELHFPEGLQVGLAVTRLGRSSVTYRLGMFRSAAPGSAEPITALGHWVHVYVDRDTRKPVPIPDPIRTLLAGAAVGDAAPK
>NZ_CP009360.2|WP_023860792.1|4972370_4973483_+|alcohol-dehydrogenase
MSGIRGAVLQRIGAPRPYARSRPISITDVELAPPGRDEVLVRIEAAGICHSDLSVVDGNRVRPVPMLLGHEAAGIVERVGPGVADLAVGARVVLVFLPRCGRCAACATEGLTPCEPGSAANGAGTLLGGDIRLSRAGRPVYHHLGVSGFATHAVVNRASAVEVPPDVPADVAALLGCAVLTGGGAVLNVGRPAPGQTVAVVGLGGVGMAALLTALTYDGVPVVAVDQLPEKLAAARRLGAHQAYTPQQAIEARVKAAVVIEAVGHPAALQTAIDLTAPGGRTITVGLPPPDARITLSPLGFVAEGRSLIGSYLGSAVPSRDIPRFVELWRAGRLPVESLVSSTIRLEDINEAMDHLADGTAVRQLIRFDG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP009360.2	3164309-3164336	2	0.929

1. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to position: 3164309-3164336, mismatch: 2, identity: 0.929

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
cgcgccacgacgatgcagagcgcagcga	Protospacer
****.*.*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	39609-39636	5	0.821
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	59210-59237	5	0.821
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	651551-651578	5	0.821
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	332447-332474	5	0.821
NZ_CP009360_8	8.1\|3452592\|25\|NZ_CP009360\|CRISPRCasFinder	3452592-3452616	25	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	891602-891626	5	0.8
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	79911-79940	6	0.8
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	815864-815891	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1335243-1335270	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1916974-1917001	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	127-154	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	226958-226985	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	167187-167214	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	MN175604	Gordonia phage PhorbesPhlower, complete genome	9914-9941	6	0.786
NZ_CP009360_5	5.1\|1371204\|28\|NZ_CP009360\|CRISPRCasFinder	1371204-1371231	28	NC_031267	Gordonia phage Lucky10, complete genome	9949-9976	6	0.786
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	125440-125469	7	0.767
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	576541-576570	7	0.767
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	107046-107075	7	0.767
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	517672-517701	7	0.767
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	MT657333	Microbacterium phage Casend, complete genome	60372-60401	7	0.767
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	39142-39172	7	0.774
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	389825-389855	7	0.774
NZ_CP009360_3	3.4\|1172143\|35\|NZ_CP009360\|CRISPRCasFinder	1172143-1172177	35	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	620134-620168	8	0.771
NZ_CP009360_3	3.4\|1172143\|35\|NZ_CP009360\|CRISPRCasFinder	1172143-1172177	35	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1192931-1192965	8	0.771
NZ_CP009360_3	3.4\|1172143\|35\|NZ_CP009360\|CRISPRCasFinder	1172143-1172177	35	MN694530	Marine virus AFVG_250M438, complete genome	7767-7801	8	0.771
NZ_CP009360_3	3.4\|1172143\|35\|NZ_CP009360\|CRISPRCasFinder	1172143-1172177	35	MN694240	Marine virus AFVG_250M436, complete genome	8280-8314	8	0.771
NZ_CP009360_3	3.4\|1172143\|35\|NZ_CP009360\|CRISPRCasFinder	1172143-1172177	35	MN694170	Marine virus AFVG_250M437, complete genome	30879-30913	8	0.771
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4993432-4993461	8	0.733
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	34530-34559	8	0.733
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1241997-1242027	8	0.742
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	MT188704	Mesorhizobium phage Cp1R7A-A1, complete genome	107371-107401	8	0.742
NZ_CP009360_10	10.1\|4961368\|31\|NZ_CP009360\|CRISPRCasFinder	4961368-4961398	31	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1428865-1428895	8	0.742
NZ_CP009360_10	10.1\|4961368\|31\|NZ_CP009360\|CRISPRCasFinder	4961368-4961398	31	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1428843-1428873	8	0.742
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	132707-132736	9	0.7
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	326083-326112	9	0.7
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1583679-1583708	9	0.7
NZ_CP009360_4	4.1\|1213812\|30\|NZ_CP009360\|CRISPRCasFinder	1213812-1213841	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	369234-369263	9	0.7
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	576934-576964	9	0.71
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	763635-763665	9	0.71
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	MN693022	Marine virus AFVG_117M4, complete genome	7968-7998	9	0.71
NZ_CP009360_6	6.1\|2948321\|31\|NZ_CP009360\|CRISPRCasFinder	2948321-2948351	31	MN692962	Marine virus AFVG_117M5, complete genome	23302-23332	9	0.71

1. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 5, identity: 0.821

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
cacggcgcgacgatgcagagcgcggccg	Protospacer
*.** ******************.** .

2. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 5, identity: 0.821

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
cacggcgcgacgatgcagagcgcggccg	Protospacer
*.** ******************.** .

3. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 5, identity: 0.821

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
catgccgcgatgatgccgagcgcagcga	Protospacer
*..*.*****.***** ***********

4. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 5, identity: 0.821

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
ccggccgcgacgatgccgatcgcagcga	Protospacer
*  *.*********** ** ********

5. spacer 8.1|3452592|25|NZ_CP009360|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

aggaggagccgggcaatctgacccc	CRISPR spacer
cggaggagccgggctatctgacatt	Protospacer
 ************* ******* ..

6. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.8

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
gctcccgcggcggcggttcggtgcgcaggg	Protospacer
 * ********* **********.**.* *

7. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 6, identity: 0.786

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
acggtcgggacgatgccgagcgcagcgc	Protospacer
   **** ******** **********

8. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.786

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
acagccgcgacgaggcagtgcgcagcga	Protospacer
   *.******** **** *********

9. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
acagccgcgacgaggcagtgcgcagcga	Protospacer
   *.******** **** *********

10. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 6, identity: 0.786

-cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
ctacggt-cgacgaagcagagcgcagcga	Protospacer
 ..** . ****** **************

11. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 6, identity: 0.786

-cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
ctacggt-cgacgaagcagagcgcagcga	Protospacer
 ..** . ****** **************

12. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 6, identity: 0.786

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
cgcgtcgcgatgatgccgagcgcgtagg	Protospacer
**********.***** ******.  *.

13. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to MN175604 (Gordonia phage PhorbesPhlower, complete genome) position: , mismatch: 6, identity: 0.786

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
ttcctcgcgacggtgcagaccgcagcgg	Protospacer
. * ********.****** *******.

14. spacer 5.1|1371204|28|NZ_CP009360|CRISPRCasFinder matches to NC_031267 (Gordonia phage Lucky10, complete genome) position: , mismatch: 6, identity: 0.786

cgcgtcgcgacgatgcagagcgcagcga	CRISPR spacer
ttcctcgcgacggtgcagaccgcagcgg	Protospacer
. * ********.****** *******.

15. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggtcgcgtcgccggttcggtgtgcgggc	Protospacer
.*. .**** ******************

16. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggcagcggcgccggctcggtgtgcggca	Protospacer
. . * **********.************.

17. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggcagcggcgccggttcgctgtgccgct	Protospacer
.*. * ************** ***** **

18. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccgtcaccgccgccggttcggtgagcggcg	Protospacer
.*..*  ** ************* ******

19. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to MT657333 (Microbacterium phage Casend, complete genome) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg----	CRISPR spacer
tctcccgcggcaccggttcggt----gacgccct	Protospacer
** ********.**********    *.**

20. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 7, identity: 0.774

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
tcgcgatcgcttccgcttccgtttcgtagga	Protospacer
.. **..****************** * ***

21. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 7, identity: 0.774

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
tcgcgatcgcttccgcttccgtttcgtagga	Protospacer
.. **..****************** * ***

22. spacer 3.4|1172143|35|NZ_CP009360|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccgacggcgcagcg	CRISPR spacer
agggcgcggcgggtgccggatccgacggggccgac	Protospacer
.**  *************** ******* ** *

23. spacer 3.4|1172143|35|NZ_CP009360|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccgacggcgcagcg	CRISPR spacer
agggcgcggcgggtgccggatccgacggggccgac	Protospacer
.**  *************** ******* ** *

24. spacer 3.4|1172143|35|NZ_CP009360|CRISPRCasFinder matches to MN694530 (Marine virus AFVG_250M438, complete genome) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccga-cggcgcagcg	CRISPR spacer
tggtggcggcgggcggcggagccgacccgctcgac-	Protospacer
 ************.* ********* * ** *..*

25. spacer 3.4|1172143|35|NZ_CP009360|CRISPRCasFinder matches to MN694240 (Marine virus AFVG_250M436, complete genome) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccga-cggcgcagcg	CRISPR spacer
tggtggcggcgggcggcggagccgacccgctcgac-	Protospacer
 ************.* ********* * ** *..*

26. spacer 3.4|1172143|35|NZ_CP009360|CRISPRCasFinder matches to MN694170 (Marine virus AFVG_250M437, complete genome) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccga-cggcgcagcg	CRISPR spacer
tggtggcggcgggcggcggagccgacccgctcgac-	Protospacer
 ************.* ********* * ** *..*

27. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggccgcggcgcccgttcggtgagcgagc	Protospacer
.*. ********** ******** ***.

28. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccttccgcgtcgccggttcggtgtgttcgg	Protospacer
.* .***** ***************.   *

29. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 8, identity: 0.742

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
tctcggccgcttccgcttccgttttctgtcg	Protospacer
..**********************..*   .

30. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to MT188704 (Mesorhizobium phage Cp1R7A-A1, complete genome) position: , mismatch: 8, identity: 0.742

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
gtccggccgcttcctcttccgcttctacaag	Protospacer
 *.*********** ******.**** *...

31. spacer 10.1|4961368|31|NZ_CP009360|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 8, identity: 0.742

cccctcaggggccgacggttcggcttgctcc	CRISPR spacer
atcaggcggggccgacggttccgcctgctcc	Protospacer
 .*    ************** **.******

32. spacer 10.1|4961368|31|NZ_CP009360|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 8, identity: 0.742

cccctcaggggccgacggttcggcttgctcc	CRISPR spacer
atcaggcggggccgacggttccgcctgctcc	Protospacer
 .*    ************** **.******

33. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggtcaatgcgccggttcggtgtccggcg	Protospacer
. . .*.  *************** *****

34. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccacccgcggcggcagttcggtgtaataat	Protospacer
.*********** *.*********.  .

35. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* *******

36. spacer 4.1|1213812|30|NZ_CP009360|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* *******

37. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 9, identity: 0.71

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
tctcggccgcttcggcttccgttttctgtcg	Protospacer
..*********** **********..*   .

38. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 9, identity: 0.71

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
gttcggccgcttcggctgccgtttgagggcg	Protospacer
 ************ *** ******    * .

39. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to MN693022 (Marine virus AFVG_117M4, complete genome) position: , mismatch: 9, identity: 0.71

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
cttcggccgcttcggctaccgttccccaatt	Protospacer
************* *** *****.*.. .

40. spacer 6.1|2948321|31|NZ_CP009360|CRISPRCasFinder matches to MN692962 (Marine virus AFVG_117M5, complete genome) position: , mismatch: 9, identity: 0.71

cttcggccgcttccgcttccgtttcttcgga	CRISPR spacer
cttcggccgcttcggctaccgttccccaatt	Protospacer
************* *** *****.*.. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

646240 : 698779

Burkholderia_virus(16.67%)

protease,integrase,transposase,tRNA,bacteriocin

attL 678904:678954|attR 701093:701143

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003875791.1\|646240_647038_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003875792.1\|647034_648045_-	peroxidase	NA	NA	NA	NA
WP_033719292.1\|648088_649396_+	M18 family aminopeptidase	NA	NA	NA	NA
WP_003875793.1\|649415_649763_+	VOC family protein	NA	NA	NA	NA
WP_003875794.1\|649763_649985_-	hypothetical protein	NA	NA	NA	NA
WP_019685434.1\|650113_652411_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.6e-269	62.7
WP_023869771.1\|652430_653081_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_023861906.1\|653093_653483_+	hypothetical protein	NA	NA	NA	NA
WP_085978605.1\|653548_655147_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.2e-45	29.7
WP_003877203.1\|655207_656302_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-56	37.9
WP_003875800.1\|656381_656567_-	DUF3073 domain-containing protein	NA	NA	NA	NA
WP_023861905.1\|656713_657808_-	folate-binding protein	NA	NA	NA	NA
WP_023861904.1\|657918_658788_+	4-amino-4-deoxychorismate lyase	NA	NA	NA	NA
WP_009974934.1\|659059_659722_-	FABP family protein	NA	NA	NA	NA
WP_003875804.1\|659718_659817_-	hypothetical protein	NA	NA	NA	NA
WP_003877205.1\|659867_660170_-	DUF1416 domain-containing protein	NA	NA	NA	NA
WP_003875806.1\|660171_661005_-	sulfurtransferase	NA	NA	NA	NA
WP_023861903.1\|661041_661512_-	DUF4395 domain-containing protein	NA	NA	NA	NA
WP_023864130.1\|661734_662154_-	thioredoxin	NA	NA	NA	NA
WP_031349049.1\|662150_662963_-	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_003875810.1\|663131_663914_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	9.1e-15	32.5
WP_033719081.1\|663910_664861_+	mycothiol acetyltransferase	NA	NA	NA	NA
WP_023861899.1\|665023_666148_+	phosphate ABC transporter substrate-binding protein PstS	A0A2R8FEI2	Cedratvirus	5.9e-07	47.7
WP_009974940.1\|666199_667243_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_009974941.1\|667239_668154_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA
WP_003875815.1\|668166_668943_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-16	33.7
WP_003875816.1\|669072_669741_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA
WP_033711302.1\|669799_671905_-	LytR family transcriptional regulator	NA	NA	NA	NA
WP_023861898.1\|672110_673244_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003875819.1\|673250_674273_-	acyl-ACP desaturase	NA	NA	NA	NA
WP_023861897.1\|674457_675072_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_023861896.1\|675140_676214_+	DUF2236 domain-containing protein	NA	NA	NA	NA
WP_033711307.1\|676230_676434_-	hypothetical protein	NA	NA	NA	NA
WP_024636831.1\|676490_676892_-	transcriptional regulator	E4ZFI8	Streptococcus_phage	4.6e-07	31.9
WP_023861893.1\|676935_677469_-	nucleoside deaminase	S4VYZ2	Pandoravirus	4.7e-15	37.9
WP_023861892.1\|677523_678420_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
678904:678954	attL	NA	NA	NA	NA
WP_033719078.1\|678987_680145_-\|integrase	site-specific integrase	A0A0E3XBN7	Gordonia_phage	9.3e-32	30.1
WP_080691802.1\|680145_680379_-	DNA-binding protein	NA	NA	NA	NA
WP_033719077.1\|680393_681737_-	cell division protein FtsK	NA	NA	NA	NA
WP_033719076.1\|681733_682156_-	hypothetical protein	NA	NA	NA	NA
WP_071321360.1\|682255_683050_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_033719075.1\|683127_683556_+	NUDIX hydrolase	NA	NA	NA	NA
WP_033719074.1\|683624_684224_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_095884802.1\|684707_685873_-	hypothetical protein	Q6H9S6	Enterobacteria_phage	6.7e-22	35.9
WP_071321527.1\|685913_686477_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_084021584.1\|686551_686974_+	hypothetical protein	NA	NA	NA	NA
WP_095764118.1\|687618_688903_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.8e-60	50.8
WP_095764118.1\|689602_690887_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.8e-60	50.8
WP_099156408.1\|690924_691200_-	PaaI family thioesterase	NA	NA	NA	NA
WP_071321362.1\|691279_694357_-	MMPL family transporter	NA	NA	NA	NA
WP_033719071.1\|695144_695828_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_080691801.1\|695840_697052_-	cytochrome P450	NA	NA	NA	NA
WP_033719070.1\|697100_697682_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_080691800.1\|698125_698779_-\|protease	CAAX protease	NA	NA	NA	NA
701093:701143	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1353716 : 1415816

Corynebacterium_phage(22.22%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033719824.1\|1353716_1354952_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.6e-77	43.0
WP_076221396.1\|1355265_1355511_-	hypothetical protein	NA	NA	NA	NA
WP_019734102.1\|1356355_1356955_-	hypothetical protein	NA	NA	NA	NA
WP_042907271.1\|1357063_1358299_-\|transposase	IS256-like element IS1311 family transposase	A0A220NQR7	Corynebacterium_phage	4.8e-111	53.2
WP_062886316.1\|1358362_1358773_-	hypothetical protein	NA	NA	NA	NA
WP_019734134.1\|1359435_1359777_-	hypothetical protein	NA	NA	NA	NA
WP_019734135.1\|1360192_1361845_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_062888076.1\|1361841_1363260_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_019734137.1\|1363263_1364589_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_044543606.1\|1364585_1365668_+	threonine synthase	NA	NA	NA	NA
WP_010949610.1\|1365697_1366645_+	homoserine kinase	NA	NA	NA	NA
WP_076221186.1\|1366614_1366920_+	hypothetical protein	NA	NA	NA	NA
WP_062888078.1\|1366912_1368775_+	transcription termination factor Rho	NA	NA	NA	NA
WP_003873232.1\|1368876_1369119_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_003873231.1\|1369215_1370289_+	peptide chain release factor 1	NA	NA	NA	NA
WP_019732347.1\|1370302_1371250_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_071321395.1\|1371249_1371909_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	1.3e-17	35.4
WP_003873228.1\|1371935_1373159_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_003877292.1\|1373374_1373857_+	ATP synthase subunit I	NA	NA	NA	NA
WP_003873226.1\|1373849_1374608_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_024636915.1\|1374692_1374941_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_033726727.1\|1374950_1375484_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_003873223.1\|1375491_1376832_+	ATP synthase subunit b-delta	NA	NA	NA	NA
WP_003877295.1\|1376899_1378564_+	ATP synthase subunit alpha	NA	NA	NA	NA
WP_003873221.1\|1378570_1379485_+	ATP synthase subunit gamma	NA	NA	NA	NA
WP_003873220.1\|1379513_1380971_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_003873219.1\|1381010_1381376_+	ATP synthase epsilon chain	NA	NA	NA	NA
WP_003873218.1\|1381392_1381836_+	DUF2550 domain-containing protein	NA	NA	NA	NA
WP_019732348.1\|1381832_1382426_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA
WP_033726728.1\|1382510_1383764_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_023861565.1\|1389651_1390464_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	4.5e-49	41.7
WP_023870547.1\|1390463_1391681_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.1e-14	31.0
WP_010949605.1\|1392155_1392653_-	methylated-DNA--protein-cysteine methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.3e-19	48.6
WP_023861301.1\|1392649_1394149_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_080691721.1\|1394235_1395129_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_033717889.1\|1395201_1396449_+	MFS transporter	NA	NA	NA	NA
WP_009975723.1\|1396472_1396808_-	hypothetical protein	NA	NA	NA	NA
WP_062887735.1\|1396913_1398548_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	3.2e-14	29.3
WP_010949602.1\|1398584_1399265_+	endonuclease NucS	NA	NA	NA	NA
WP_023865474.1\|1399288_1399585_+	hypothetical protein	NA	NA	NA	NA
WP_033717892.1\|1399595_1400060_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_011724213.1\|1400140_1401322_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_033717893.1\|1401512_1402424_+	co-chaperone YbbN	NA	NA	NA	NA
WP_023897719.1\|1402449_1404645_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_033717895.1\|1404679_1406770_-	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
WP_071321396.1\|1407069_1409682_+	DUF3417 domain-containing protein	NA	NA	NA	NA
WP_033717897.1\|1409665_1411678_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	1.1e-48	26.7
WP_033717898.1\|1411711_1413046_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.9e-42	34.9
WP_010949598.1\|1413113_1413431_+\|protease	ATP-dependent Clp protease adaptor ClpS	NA	NA	NA	NA
WP_019733669.1\|1413455_1414043_+	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_023868653.1\|1414053_1415094_+	S58 family peptidase	NA	NA	NA	NA
WP_023868635.1\|1415144_1415816_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

1533086 : 1546476

Burkholderia_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095764118.1\|1533086_1534371_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.8e-60	50.8
WP_071321398.1\|1534448_1535042_+	hypothetical protein	NA	NA	NA	NA
WP_009979999.1\|1535977_1536772_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.6e-30	33.9
WP_011724852.1\|1536768_1538349_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062889334.1\|1539207_1539474_+	hypothetical protein	NA	NA	NA	NA
WP_095764118.1\|1540325_1541610_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.8e-60	50.8
WP_023861565.1\|1541820_1542633_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	4.5e-49	41.7
WP_023870547.1\|1542632_1543850_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.1e-14	31.0
WP_076221353.1\|1544290_1544485_+	hypothetical protein	NA	NA	NA	NA
WP_062889416.1\|1544481_1544946_+	hypothetical protein	NA	NA	NA	NA
WP_085978347.1\|1545206_1546476_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-53	50.4

DBSCAN-SWA_4

3732102 : 3738674

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071321464.1\|3732102_3734268_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.6e-207	51.5
WP_003874934.1\|3734237_3734690_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.7e-13	37.7
WP_003874933.1\|3734732_3734972_-	NrdH-redoxin	V5UN81	Mycobacterium_phage	2.0e-21	64.5
WP_080691690.1\|3735047_3735314_-	hypothetical protein	NA	NA	NA	NA
WP_003874932.1\|3735501_3736056_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.4e-06	33.6
WP_033717674.1\|3736149_3736764_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_033717675.1\|3736763_3737807_+	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.9e-20	28.5
WP_009978328.1\|3737741_3738674_-	short chain dehydrogenase	W8CYX9	Bacillus_phage	4.6e-05	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009406_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009406_1

16364-16450

Orphan

Consensus_repeat	Method
GTTCAGCTCGTCCCACACCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009406_1

>merge|NZ_CP009406|1|16364-16450|CRISPRCasFinder
GTTCAGCTCGTCCCACACCCGACCTCCCTGGGTGGCCCACAGGTCCGTCAACTTGGATCCGGTGTTCAGCTCGTCCCACACCCGACC

>NZ_CP009406|1|1|16364-16450|CRISPRCasFinder
GTTCAGCTCGTCCCACACCCGACC	TCCCTGGGTGGCCCACAGGTCCGTCAACTTGGATCCGGT
GTTCAGCTCGTCCCACACCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009406.1\|WP_062908226.1\|9987_10191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908233.1\|14549_15221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908236.1\|17347_17827_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908229.1\|11721_11922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908227.1\|10201_10804_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP009406.1\|WP_071321627.1\|9291_9558_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908225.1\|9593_9815_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908237.1\|17898_18108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908228.1\|10997_11234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_071321628.1\|12750_12975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_071321629.1\|14121_14343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009406.1\|WP_062908231.1\|13208_13928_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP009406.1\|WP_062908235.1\|16953_17169_-\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP009406.1|WP_062908233.1|14549_15221_-|hypothetical-protein
MAGTYRPPAHPVLDRAYANTAGAVAYLDETFDDGEHGASRFYVFTAVVVERAELQLLREELRAIAGGTFWHTTDELRTEEGRKKASAMLNFLGDGDEICVIAHHSRVDDGDHDLEAARRACLRGLASTLSVGAAPLRGSVDLMVLEERNPRNRSNLDRKNIAAMRAEGLVHRSMQAVLTSPKYEHLLWLPDLVSSAYRGTFTRADDSLFSLIEQRVHVIDPLP
>NZ_CP009406.1|WP_071321629.1|14121_14343_+|hypothetical-protein
MAKASIYLDEHTDAYLETVRAAARTTKPRVDATRSAVVRLALNRLADQLTPGEVVAELQRNAEGHTGPGRKRS
>NZ_CP009406.1|WP_062908231.1|13208_13928_+|ParA-family-protein
MAAIAVCHSRKGGVGKSFIAYELATLLGAVLVDLEHDGGGVTTKWGYRPQDHPRARLLDALEPGAAAPRPLRGFKKPALVPGHPDLYDHQPDATTMADALTKWAQEWDTDWIIVDTHPGASPAAHGALAVANIVLAPTALRTAELDATAELVNEIADYPLVIVPNFVPTTPPAPEIQRLRQIIENTPVQVAPPIPTALHVGTRKKRIAITAEHPPAKSLQRVADALGNLATFVKGYVDG
>NZ_CP009406.1|WP_071321628.1|12750_12975_+|hypothetical-protein
MREKKFPWDARGAAAAGVATIAIIATLLAPAAWAPLVSIINTLAVALVLRPADDGTGGMERRPSSRPPQFLLRS
>NZ_CP009406.1|WP_062908229.1|11721_11922_+|hypothetical-protein
MTRFNNGDLVAAIKDIGGFAREFVPRGSEGVVVDAPMWGDAVVLFTVKGFLSDKKVRITISDDEVR
>NZ_CP009406.1|WP_062908228.1|10997_11234_+|hypothetical-protein
MSEMIRTDSRGRVTLVGHPDSTYLLREEPDGVLVLQPAVIMSAAQASYLALPTADRTRIEDFLDDPAAAVKRTYTRRR
>NZ_CP009406.1|WP_062908227.1|10201_10804_-|recombinase-family-protein
MRIGYGRVSTRDQRPEVQRDALAAAGCDRIFLDVVSGKLARRPELDKALLSASRAGDQLVVTKLDRLGRSLEHLIELSKRLEAAGVDLVVLDQGIDTSSAIGRMFFQILGAVAEFEHALMSERTMDGLAAARARGRTGGQKPKLGPRQVKLAQQMYDETGDDGKRRYTVAQIAAEFGVTRPTIYRHLGKPANISTSTAIM
>NZ_CP009406.1|WP_062908226.1|9987_10191_+|hypothetical-protein
MHLDHYTDKERRAHGKKLARARAAAAEASRIAQIMAQSAHSEGISETRIAEELGVDRMTVRKWLGKR
>NZ_CP009406.1|WP_062908225.1|9593_9815_-|hypothetical-protein
MALDDDALRAIVDPPVDGPVLSGGPDPMSAALMAAMADWPAVTAQLRLDRAAAAEELAIAHSKFFYDAGGGQK
>NZ_CP009406.1|WP_071321627.1|9291_9558_-|hypothetical-protein
MGAAIAAWQADVPATVAYPELAAAPDDAATAAVLAAIAHWPGEHTTMARDRDEKATRFAAAASATTRIEGGADDDNAMRIRSIEGVWT
>NZ_CP009406.1|WP_062908235.1|16953_17169_-|hypothetical-protein
MDEDEALAELVRAHADLARLDEESAEARERRRQAARRLVESGRGTTWIAAQLGVTKQAVDGFLRYKERKQR
>NZ_CP009406.1|WP_062908236.1|17347_17827_+|hypothetical-protein
MLPHPEYGGWQLVDRHGAIIDRCRTKAQAERRRHSGPDAQRWYQRTDWYLGYDAGGRTLTGPEQLIVDDLTRPILDAAHAFHRATDSRRVRYIDQAADDDRIWDAVELPNGRYQVRGDYFHTYTAAALEFLDDQAAAATTDLTAFLRDLLDTDRMRYAV
>NZ_CP009406.1|WP_062908237.1|17898_18108_+|hypothetical-protein
MPAHHKGDRKPYTVRPPREVASLLEEKFAQSGVSSMAQYLADVLALHADRPDLVRELGKDHKEVLPLAM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP009406_1	1.1\|16388\|39\|NZ_CP009406\|CRISPRCasFinder	16388-16426	39	NZ_CP036222	Mycobacterium avium subsp. hominissuis strain mc2 2500 plasmid unnamed2, complete sequence	437-475	1.0
NZ_CP009406_1	1.1\|16388\|39\|NZ_CP009406\|CRISPRCasFinder	16388-16426	39	NZ_CP036222	Mycobacterium avium subsp. hominissuis strain mc2 2500 plasmid unnamed2, complete sequence	18731-18769	1.0
NZ_CP009406_1	1.1\|16388\|39\|NZ_CP009406\|CRISPRCasFinder	16388-16426	39	NZ_CP009406	Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p18K, complete sequence	16388-16426	1.0

1. spacer 1.1|16388|39|NZ_CP009406|CRISPRCasFinder matches to NZ_CP036222 (Mycobacterium avium subsp. hominissuis strain mc2 2500 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tccctgggtggcccacaggtccgtcaacttggatccggt	CRISPR spacer
tccctgggtggcccacaggtccgtcaacttggatccggt	Protospacer
***************************************

2. spacer 1.1|16388|39|NZ_CP009406|CRISPRCasFinder matches to NZ_CP036222 (Mycobacterium avium subsp. hominissuis strain mc2 2500 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tccctgggtggcccacaggtccgtcaacttggatccggt	CRISPR spacer
tccctgggtggcccacaggtccgtcaacttggatccggt	Protospacer
***************************************

3. spacer 1.1|16388|39|NZ_CP009406|CRISPRCasFinder matches to NZ_CP009406 (Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p18K, complete sequence) position: , mismatch: 0, identity: 1.0

tccctgggtggcccacaggtccgtcaacttggatccggt	CRISPR spacer
tccctgggtggcccacaggtccgtcaacttggatccggt	Protospacer
***************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009405

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009360

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection