CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011319	Janthinobacterium sp. 1_2014MBL_MicDiv, complete genome	4 crisprs	WYL,RT,csa3,DinG,DEDDh,c2c9_V-U4,cas3	1	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011319_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011319_1

78528-78771

Unclear

Consensus_repeat	Method
NNNNNNNAAGGCCGTAATCCGACAACACCC	CRT

4 spacers

cas3,WYL

The CRISPR arrays of NZ_CP011319_1

>merge|NZ_CP011319|1|78528-78771|CRT
AAGGCCGTAATCCGACAACACCGGGAACCAAGAAAAGCCATAGCGATTAGGCCGCAAGGCCGTAATCCGACAACACCCGGAAACAAGCAATGCCAATAGTGTGCAGGCCGTAGGCCGTAATCCGACAACACCGGGAACCAAGAAGAGCCATAGCGATTAGGCCACAAGGCCGTAATCCGACAACACCCGGAAACAAGCAATGCCAATAGTGTGTAGGCCGCAAGGCCGTAATCCGACAACACCC

>NZ_CP011319|1|1|78528-78771|CRT
AAGGCCGTAATCCGACAACACCG	GGAACCAAGAAAAGCCATAGCGATTAGGCCGC
AAGGCCGTAATCCGACAACACCC	GGAAACAAGCAATGCCAATAGTGTG
CAGGCCGTAGGCCGTAATCCGAC	AACACCGGGAACCAAGAAGAGCCATAGCGATTAGGCCAC
AAGGCCGTAATCCGACAACACCC	GGAAACAAGCAATGCCAATAGTGTGTAGGCCGC
AAGGCCGTAATCCGACAACACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011319.1\|WP_071321676.1\|84249_84582_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP011319.1\|WP_071321674.1\|79567_81658_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP011319.1\|WP_083411566.1\|77068_78283_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP011319.1\|WP_083412082.1\|72548_74006_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP011319.1\|WP_071321675.1\|81857_82913_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP011319.1\|WP_071321678.1\|86634_87657_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP011319.1\|WP_071326159.1\|67189_69043_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227590
NZ_CP011319.1\|WP_071321668.1\|71780_72506_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP011319.1\|WP_071321672.1\|76067_77057_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP011319.1\|WP_071321677.1\|84678_86544_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP011319.1\|WP_071321681.1\|89252_89879_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP011319.1\|WP_071321670.1\|74157_75222_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|235474
NZ_CP011319.1\|WP_071321671.1\|75229_76033_+\|DUF3025-domain-containing-protein	unknown	unknown	gnl\|CDD\|378604
NZ_CP011319.1\|WP_156894638.1\|87730_88480_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226419
NZ_CP011319.1\|WP_071321666.1\|69239_70196_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270406
NZ_CP011319.1\|WP_083412083.1\|88506_89178_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP011319.1\|WP_071321673.1\|78779_79271_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011319.1\|WP_071326160.1\|70295_71045_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP011319.1\|WP_034745502.1\|82914_84054_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP011319.1\|WP_071321667.1\|71046_71739_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185062

Protein	Function_ID	Function_description	E-value
NZ_CP011319.1\|WP_071321676.1\|84249_84582_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	3.77767e-49
NZ_CP011319.1\|WP_071321674.1\|79567_81658_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP011319.1\|WP_083411566.1\|77068_78283_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.59496e-82
NZ_CP011319.1\|WP_083412082.1\|72548_74006_+\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.55066e-37
NZ_CP011319.1\|WP_071321675.1\|81857_82913_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP011319.1\|WP_071321678.1\|86634_87657_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	8.29973e-134
NZ_CP011319.1\|WP_071326159.1\|67189_69043_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227590	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP011319.1\|WP_071321668.1\|71780_72506_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.01957e-147
NZ_CP011319.1\|WP_071321672.1\|76067_77057_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.22787e-61
NZ_CP011319.1\|WP_071321677.1\|84678_86544_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP011319.1\|WP_071321681.1\|89252_89879_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	5.89065e-41
NZ_CP011319.1\|WP_071321670.1\|74157_75222_+\|dihydroorotase	gnl\|CDD\|235474	PRK05451, PRK05451, dihydroorotase; Provisional.	0
NZ_CP011319.1\|WP_071321671.1\|75229_76033_+\|DUF3025-domain-containing-protein	gnl\|CDD\|378604	pfam11227, DUF3025, Protein of unknown function (DUF3025). Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.	2.28681e-98
NZ_CP011319.1\|WP_156894638.1\|87730_88480_+\|hypothetical-protein	gnl\|CDD\|226419	COG3904, COG3904, Predicted periplasmic protein [Function unknown].	0.00145807
NZ_CP011319.1\|WP_071321666.1\|69239_70196_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270406	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.56227e-107
NZ_CP011319.1\|WP_083412083.1\|88506_89178_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.31471e-52
NZ_CP011319.1\|WP_071321673.1\|78779_79271_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.42591e-34
NZ_CP011319.1\|WP_071326160.1\|70295_71045_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.41912e-63
NZ_CP011319.1\|WP_034745502.1\|82914_84054_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP011319.1\|WP_071321667.1\|71046_71739_+\|ABC-transporter-permease-subunit	gnl\|CDD\|185062	PRK15107, PRK15107, glutamate/aspartate ABC transporter permease GltK.	3.61338e-68

>NZ_CP011319.1|WP_083411566.1|77068_78283_+|MFS-transporter
MTLPSSRPSLKTVLIASGVVLTLAMGVRHGLGFWMQPISQANGWTRETYSLALAMQNLMWGVFGPFAGMAADRFGTMRVVIVGAISYMAGLVWMALVTQPTLFIVGSGIFIGLALACTAFGAISGIIGRSAPPEQRSWAFGISSAAGSFGQFLMMPVEQQLISAVGWQNAFYVLAALVLLAMIPMAFYLREPPVTHASGPQQSVGAAFSEAVASRSFWLLLAGYFVCGFQLVFIGVHLPAYLKDQGLMNPNIAVTALALIGLFNIVGSYYAGKLGGKIAKRYLLSAIYVARAVVITLFLLAPLSSWSVYLFAAGMGVLWLSTVPLTNGIIAGIFGVKHLSMLAGMVFFSHQVGSFLGAWLGGYLYEHQGTYHAVWMITIGLGLLAALINLPIDERAVKRAAVAA
>NZ_CP011319.1|WP_071321672.1|76067_77057_+|Gfo/Idh/MocA-family-oxidoreductase
MDKVIRWGILGTGKIARAMAIGLRDAPGAQLVAVASRSDAGALAFGAEFGIERCHGSYQALADDADVDVIYIATPHTLHAENALMCLAAGKHVVCEKPFTMNAREAQAVVDMAREKKLFLMEAMWSRFLPAVQEAKRIIASGEIGVPQQVQADIGFVASFPPEHRMFNPELGGGALLDVGIYPLSMAAFFLGPVSAVQALAEMGATGVDEQVVFSLLHAGGGTSSCACSLHALTPTEMTISCSLGRIRLPNRFYKPDSLIVEAMDGERRVVAAPCLGNGYTHEALEAMRCIRAGLLESPVMPHADSVALMHNLDTMRGQIGLVYSADQA
>NZ_CP011319.1|WP_071321671.1|75229_76033_+|DUF3025-domain-containing-protein
MLPSIDWTRPWYATVLPARRQLDLQRDTVIAALNGQARALDLRNPSGLPLAFVPQSELPEGVAYEEFIGATGGVPTRDNLHDFFNALVWLTFPRIKRQLNALQAAQIALSGVGKSRGPARDGATIFDENSALLVLRDSDAGRALEATLRGHDWRGAFIAQRGKFGAGGDAEVCLFGHALMEKLVAPYKAITAHARVIFAGDAYFALDDAARRAWLDERVAQDLASGGLTTADFTPLPVLGLPGWSEGQDDDFYNDATVFRPKRKAST
>NZ_CP011319.1|WP_071321670.1|74157_75222_+|dihydroorotase
MSTPDHTPTAVPSSITITRPDDWHLHLRDGAVMASVLPHSARQFGRAIVMPNLKPPVTTTADAAAYRERILAAVPEGVNFDPLMVLYLTNNTSPDEIRRAQDSGIVQAVKLYPAGATTNSDAGVTDLKNCYKVLEVMQEVGMPFLVHGEVTDPEIDIFDREAVFIERVMRPLRSAFPALSVVFEHITTKDAAQYVAEAEGPIAATITAHHLLYNRNEIFKGGIRPHYYCLPILKREEHRLALMTAAASGDERFFLGTDSAPHAQGAKEMACGCAGCYTALHAMEMYAEAFERAGALDKLEAFASFHGPAFYGVARNTDTITLKRESWTLPASLPLGDSHVIPLNAGEQINWKMV
>NZ_CP011319.1|WP_083412082.1|72548_74006_+|amidohydrolase-family-protein
MPVLKKMAGAMLALGFLAQAHAADRIAVDIALRDATVIDVAAGRAITGQSVLLKGDSIVAVVDDAQLRSYAPKRTIRLPGKYLMPGLWDTHVHFGGGPELIDENKQLLPLYLAHGITTVRDCSGDLPDTVLAWRQQINAGQLQGPTIFTSGAKLEGIKPLWKGTIEVGTPQEVTRALDGLQAQHVDFVKITENTLKPELYLEALRQARERGMRTSGHIPVQLTLGQMADAGLGTIEHQSYLLRATTPREQELTDQVAAGKLTGKEAMRASVQSYDEPTARKAFSYLAARGTAIVPTLWGSRVTAYLDREDHTHDPALQYIGKGLRATYDWRVQRAAKDGPEAIAQRHAQFEQSAKLLPILQQQGVSIIAGTDAGFLNSFDYPGQALHDEIGLYVQYGLTPQQALQSAVINGPRFLGKLERYGSVAAGKAADLLVLDANPLQDIGATRQIRLVVSRGHVYDRAALDRMLADIRAWVAKQEAPPAKS
>NZ_CP011319.1|WP_071321668.1|71780_72506_+|amino-acid-ABC-transporter-ATP-binding-protein
MIELNKVSKWYGQFQVLTDCTTQVAKGDVMVICGPSGSGKSTLIKTVNGLEPIQQGQIIVDGIAVNDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSADEANAKGLKYLDRVGLLSQQDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMGFAKRVANRIVFMDQGKIIEDCSKDDFFNTTRSDRARDFLAKIIH
>NZ_CP011319.1|WP_071321667.1|71046_71739_+|ABC-transporter-permease-subunit
MFGNFDFDVISRSWVYLFQTGMVFTLKLTALSMVGGIVLGTLLALMRLSSNRILSGVASSYVNLIRSIPLVLVIFWFYFLVPYIAAWIIGAAEPVKVGAFSSALITFIMFEAAYYCEIMRSGIQSIPRGQVWAGQALGMNYRQTMGSIVLPQAFRNMIPVLLTQTIVLFQDVSLVYVLSIPDFVGAASKIAQRDGRLVEMYVFVAVVYFVLCYALSFLVKRLQKRVAIIR
>NZ_CP011319.1|WP_071326160.1|70295_71045_+|amino-acid-ABC-transporter-permease
MNYNWNWRIFWEISPDGVGTYMDTLWSGLIWTLATAGTAWIMALILGLVIGTIRTLPNKWIVGVANAYVELFRNVPLLVQMFLWYFVMPELLPTDMGNWVKSLPNAPFVTAVLCLGFFTSSRVAVQVTTGIEALPRGQKLAGTALGLTLPQTYRFILLPMAARVIMPPLTSEFLNIIKNSSVALTIGLIELTASARAIQEFSFQVFEAFSAATIIYVVVNLLVVVLMHLIEKKVAIPGFIVAGAKTGGH
>NZ_CP011319.1|WP_071321666.1|69239_70196_+|amino-acid-ABC-transporter-substrate-binding-protein
MKLTRIVATLLSVGVLSSMSPAQAQELTGTLAKIKKAGSVTLGVRDGSVPFSYLDDKQQYQGYSIDLCMKVVTALQKHLGLSELKVVMSPVTSANRIPLMANGTIDLECGSTTNNLERQQQVAFAPTMFVIGNRVLSKKSSNIKTLEDLRGKTLVATAGTSTIKQMTILNKEKNLGMNIAVGKDHPESFLMLETGRAVAEANDDILLASQVANSKNPNDYEITKEALSVEPYGIMLRKGDPAFKKVVDDALIRLYKSDDINRIYAKWFTSPIPPKNINLKFPMPPQLKAVFTNPTDSGDPAAYAAVPEAQKTSDKRKK
>NZ_CP011319.1|WP_071326159.1|67189_69043_+|ABC-transporter-ATP-binding-protein/permease
MRRSQTPPPPRSPASASHSDFATIKTLLPYLWVYKWRVLLALLCLVGAKLANVGVPLILKKLVDAMTITAAHPQALLVLPVGLLVAYGLLRLSTTLFTELREFLFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRSVGSLISYTLFNILPTLVEITLVLGYLVLHYDIWFTVITAVALVSYIAFTVLVTNWRTHFRRTMNDLDSKANTKAIDSLINYETVKYFGNEDYEAKRYDEGLQRYESAAVKSQTSLSLLNTGQSLIIATAVTLILWRATVGVIAGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLNENREIADTPEARPLVTRGAAVRFEHVDFSYEAKRQILFDVDFQIAAGTTTAVVGHSGSGKSTLSRLLFRFYEVDGGGITIDGQDLRSITQDSLRAAIGIVPQDTVLFNDTIEYNIAYGKPGASKDAIVAAAKAASIHDFIESLPDGYNSMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSKAEQAIQAQLKDIARNRTTLVIAHRLSTVADAQQILVLDHGRIVERGTHPQLLAANGLYAQMWQRQQANMDDETEEDDALAGLAPVK
>NZ_CP011319.1|WP_071321673.1|78779_79271_+|transposase
MRYRRAFQPGGSFFFTVVTAHRRPVFATATAVDFLRHAFRTVRHKRPFNIDAIVILPDHLHCIWTLPEGDADFMTRWRLIKTWFSKHAGIKDTWQHRFWEHVLRDGRDLANHVDYIHYNPVKHGLVEQVIDWPYSSFHRYLKQGWCAADWGGEGVDVAGIGRE
>NZ_CP011319.1|WP_071321674.1|79567_81658_-|ATP-dependent-DNA-helicase-RecG
MPDPTPDLPPAAKPKAAKKVVSTESRLAKLGLRTDMDLVLHLPMRYEDETKVYTIRDACLRGGESWQVEGVVTKCEVSFKPRKQLLVTIADETGNLLLRFMNFYGSQVKQLAEGTRVRARAELKHGFFGAEMVHPTYKVVNEGAPLPTALTPVYPSGEGLSQHVLRREIADAMRRIDWHDTLPEPLLHEMQLSPFRAAVHLLHYPPQDIDESALMDRSHPAWVRMKFDELLAQQLSLKRAQRARRSKGAASLPIVGTLSEAFGAALPFKLTGAQARVLDEIRADLRQPYPMQRLLQGDVGSGKTVVAALSATQAIDSGYQAALMAPTEILAEQHFRKIAAWMEPLGVKVAWLTGSLKKKEKTAALALIESGEAQLVIGTHALIQDNVQFAKLGLVIVDEQHRFGVGQRLTLRNKGDSAAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRAIDQNRRDEVIARVYAAALEGRQVYWVCPLIEESEALQLQTATDTYMMLAEALPALQVGLVHGRLKPAEKQEVMDAFIAGQLHVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGVARQRLMTMRETTDGFEIARRDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDQARDVAHDLLHATTAAAATTVEAHLARWLGGKEEFLKV
>NZ_CP011319.1|WP_071321675.1|81857_82913_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MYSLSDFDFNLPQENIAQTPLAERSASRLLHLDGDALVDRQFADIVGLLQAGDLLVMNDTRVLKARFFGVKESGGKIEALVERVLDERTVLAQVRASKSPPPGCRIRLADAFDVTVGQRAGEFFTLHFEADVFELIEAHGRLPLPPYIEHDADAFDETRYQTVFNKVPGAVAAPTAGLHFDQALLDQLKAKGVNFAYVTLHVGAGTFQPVRTEVLSEHKMHTEWYTMPQDTVDAVRATQRAGRDVVAVGTTSLRALESASQSGQLVAGSADTALFITPGYAFKTVTRLITNFHLPKSTLLMLVSAFAGYEPIRHAYAHAIAQNYRFFSYGDAMLLTTQSRAALNLHTPVKD
>NZ_CP011319.1|WP_034745502.1|82914_84054_+|tRNA-guanosine(34)-transglycosylase-Tgt
MLEFTLLKTDTSGLTKARRGTLKLNHGVVQTPIFMPVGTYGSVKAMSPLELNEIDAQIILGNTFHLWLRPGNTVMEKFGGLHGFMGWNKPILTDSGGFQVFSLGAMRKITEEGVHFNSPINGDKLFLSPEVSMQVQRVLNSDIVMQFDECTPYEIQGRPATIEEAAKSMRMSLRWAQRSKDEFHRGENPNALFGIVQGGMFEMLRDESLAKLEEIDFPGIAIGGLSVGEPKEDMMRMLAHVGPRLPANKPHYLMGVGTPEDLVAGVSNGIDMFDCVMPTRNARNGWLFTRFGDIKIKNAKYKEDQAPLDETCSCYACRNFSRAYLHHLHRSKEILGARLNTIHNLHYYLDLMRQMREALDEDRFHAFTLQFHAERARGT
>NZ_CP011319.1|WP_071321676.1|84249_84582_+|preprotein-translocase-subunit-YajC
MFFISNAYAQAPADALGFGGNLTSFLPLVLMFVVMYFLMIRPQQKRAKEQKAMMDALTKGDEVVTAGGMLGRVVKVVDAYVTIEVATGTEITVQKSSITTLLPKGTLKAL
>NZ_CP011319.1|WP_071321677.1|84678_86544_+|protein-translocase-subunit-SecD
MNRYPAWKYIIIAVALLLGALYTAPNYFGESPALQVTSGKSTVKVTGELMTQVEQILTKESVKSEGITMDGVGNLASVRVRFADPDTQFKAKLVLEKDLNTDPSDPTYVVTVNLQANTPQWMQKLHALPMFLGLDLRGGVHFLMQVDAKAVLTKKVQGIQSAARSVLRDKNIRHAGIERVGDSIDINFRDAETRLKAKNVLSDQMSELAFADAGSGSDLKLVITLKPAALKATIDEGVKQNISTLSKRVNELGVAEPLIQQQGPDRIVVQLPGVQDVARAKAIIGRTATLEVRLVDESIVPGTELSSAIPFNSELFTVGKGVPVVLSKDVILTGDYISSATASFDQNQQAAVSIDLNGDGGRKMREATRERVGKRMAIVLFEKGKPEVLSVATIQQELGSRFQITGMGGAENANELALLLRSGALSAPMTVIEERTIGPQLGAENIAKGLHSTMYGFLAIAVFMIAYYMMFGAFSVLALACNLLLLIALLSMIQVTLTLPGIAAIALALGMAIDANVLINERIREELRAGSTPQAAIAAGFDRAWATILDSNVTTLIVGIALLAFGSGPVRGFAVVHCLGILTSMFSAVFVSRGVVNLWYGRKKKLTTLSIGTVWVPGTSK
>NZ_CP011319.1|WP_071321678.1|86634_87657_+|protein-translocase-subunit-SecF
MEFFRIKKDIPFMRHALIFNVISALTFVAAVFFLLHKGLHLSVEFKGGTVMEVKYPKAANLEGIRGTLIGMGYEEPGVTSFDTARDVMIRLPVEKGVTAANTSLRVFEALCKAEQGTTKGIDTVTEKGEHVLKSACLDAAGNEALVLQKVEFVGPQVGEELAQNGLNALVMVIIGVMIYLAIRFEWKYAVSAIVANLHDVVIILGFFAYFQWEFSLTVLAAILAVLGYSVNESVVIFDRIRENFRKHRKASVHEVIDNAITSTISRTIITHGCTQMMVLSMLFFGGQTLHHFAIALTIGICFGIYSSVFVAAAIAMWLGVKREDLIKPVKEKDETDGAVV
>NZ_CP011319.1|WP_156894638.1|87730_88480_+|hypothetical-protein
MKRFLCMGIMAGATALAGAADFSRMADGSIAMRGAIAEGDVDRLRQLAPREATLLRVNSDGGDAQAAMLLARLVRQQGFDIAIDTVCTGSCASYVFPAARRKRIPADGVLALQESAFLRAQASPAQLRRTLVEAGVAAEDLETETDALAAQLADAAALEAAFSRDLGIAPAFYRDFRQVAAQAEATRQRFPDQDAAVFWWPAAKRLERCYGIAAVDEGARAARLAPGGYLYVPALSALVMGDQGLQACP
>NZ_CP011319.1|WP_083412083.1|88506_89178_+|YafY-family-transcriptional-regulator
MDAMRAKRVPVTAAQLAQQLGVSERTIYRDIQTLAELGAPLQGEAGIGYVLRRGVFLPPLMFGPDELEALVLGARWVRRQGDAGLAQAASAALAKIAAASPRDLRDNMAETSLWVPLGRPADGTEPADRYVQPVREAIRYEQKLTLGYQDERGSATQRTVWPFALAFFEGKRLLAAWCELRGDYRHFRIDRIASVDNCGERYPTRRHVLLETWRKAHDIDPET
>NZ_CP011319.1|WP_071321681.1|89252_89879_+|glutathione-S-transferase-family-protein
MRLYHHPMSSNARRALMTAIHLELPLELAEVDLMNADDRRRLGELNPNGKVPVLADGDFLLWESCAIMQYLAEQVPGQTIYPSAPQARADVNRWLFWAAQHFAPAIGVLAWERAWKGMTGGGPADPLEEARGERELHACAVVLDAHLARRNWLSGEDVTLADFAVAAPLMYSEAVRLPLGQYAHIQAWFGRVRQLRAWQATQVDLSVG

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Crispr_ID: NZ_CP011319_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011319_2

623638-623724

Orphan

Consensus_repeat	Method
CTACTGCCGTGATCGAGGTAGGTTGGATTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011319_2

>merge|NZ_CP011319|2|623638-623724|CRISPRCasFinder
CTACTGCCGTGATCGAGGTAGGTTGGATTAGGGCCTGCGCGTAATCCGACAGGCGACTACTGCCGTGATCGAGGTAGGTCGGATTAG

>NZ_CP011319|2|1|623638-623724|CRISPRCasFinder
CTACTGCCGTGATCGAGGTAGGTTGGATTAG	GGCCTGCGCGTAATCCGACAGGCGA
CTACTGCCGTGATCGAGGTAGGTCGGATTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011319.1\|WP_071322051.1\|613260_614505_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP011319.1\|WP_071322059.1\|621268_622291_+\|lipopolysaccharide-heptosyltransferase-I	unknown	unknown	gnl\|CDD\|274025
NZ_CP011319.1\|WP_071322053.1\|615325_616411_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP011319.1\|WP_071322063.1\|625513_626101_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_CP011319.1\|WP_071322057.1\|619486_619795_+\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NZ_CP011319.1\|WP_071322052.1\|614522_615329_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP011319.1\|WP_071322069.1\|632769_633834_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP011319.1\|WP_071322067.1\|631897_632317_-\|DUF4259-domain-containing-protein	unknown	unknown	gnl\|CDD\|372905
NZ_CP011319.1\|WP_071322055.1\|617085_618006_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP011319.1\|WP_071322064.1\|626100_628203_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP011319.1\|WP_071322056.1\|618093_618933_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NZ_CP011319.1\|WP_071322054.1\|616412_616967_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP011319.1\|WP_071322058.1\|619875_621264_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NZ_CP011319.1\|WP_071322065.1\|628240_629155_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP011319.1\|WP_071075558.1\|630902_631781_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226910
NZ_CP011319.1\|WP_071322068.1\|632321_632786_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NZ_CP011319.1\|WP_071322061.1\|623764_624712_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP011319.1\|WP_071322062.1\|624756_625497_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP011319.1\|WP_071322060.1\|622310_623585_+\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_CP011319.1\|WP_083412094.1\|629305_630823_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721

Protein	Function_ID	Function_description	E-value
NZ_CP011319.1\|WP_071322051.1\|613260_614505_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.0553e-89
NZ_CP011319.1\|WP_071322059.1\|621268_622291_+\|lipopolysaccharide-heptosyltransferase-I	gnl\|CDD\|274025	TIGR02193, LIPOPOLYSACCHARIDE_HEPTOSYLTRANSFERASE-1, lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	5.18202e-107
NZ_CP011319.1\|WP_071322053.1\|615325_616411_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	8.68977e-18
NZ_CP011319.1\|WP_071322063.1\|625513_626101_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	5.54967e-109
NZ_CP011319.1\|WP_071322057.1\|619486_619795_+\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	3.53914e-17
NZ_CP011319.1\|WP_071322052.1\|614522_615329_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.60155e-99
NZ_CP011319.1\|WP_071322069.1\|632769_633834_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	1.33235e-145
NZ_CP011319.1\|WP_071322067.1\|631897_632317_-\|DUF4259-domain-containing-protein	gnl\|CDD\|372905	pfam14078, DUF4259, Domain of unknown function (DUF4259). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 118 and 145 amino acids in length.	1.08741e-21
NZ_CP011319.1\|WP_071322055.1\|617085_618006_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.54622e-27
NZ_CP011319.1\|WP_071322064.1\|626100_628203_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP011319.1\|WP_071322056.1\|618093_618933_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	8.41948e-146
NZ_CP011319.1\|WP_071322054.1\|616412_616967_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.36253e-25
NZ_CP011319.1\|WP_071322058.1\|619875_621264_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP011319.1\|WP_071322065.1\|628240_629155_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP011319.1\|WP_071075558.1\|630902_631781_-\|CBS-domain-containing-protein	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	6.19955e-127
NZ_CP011319.1\|WP_071322068.1\|632321_632786_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	2.73258e-66
NZ_CP011319.1\|WP_071322061.1\|623764_624712_-\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	1.84764e-66
NZ_CP011319.1\|WP_071322062.1\|624756_625497_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.236e-50
NZ_CP011319.1\|WP_071322060.1\|622310_623585_+\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NZ_CP011319.1\|WP_083412094.1\|629305_630823_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	4.50928e-169

>NZ_CP011319.1|WP_071322060.1|622310_623585_+|3-deoxy-D-manno-octulosonic-acid-transferase
MRLLYTLAWWLALPLVLARLWLRGRQEPGYRQHWGERLGFYGRRPAPVPPTIWLHAVSVGETRAAEPLIDALLAEWPACRIVLTHMTPTGRATGKSLFAKHGARLLQSYLPYDTGAMPASFIRHFAPRICILMETEVWPNLIHQCNRHGVPVVLANARLSQRSLGKAQRLGKLIGDAARGITLVAAQTQDDAQRVRQLGVPDVVVTGSIKFDVVVPDAALATGAWLRGAIGARPVLLCASTREGEEPLILDAWLRASQPAGVLLLIVPRHPQRFDEVEKMVLAHGLAVQRRSSLTGDGVVAAGTQVLLGDTMGEMFAYYAACDCAFVGGSLLPLGGQNLIEPAALGKPVLIGPHTFNFALVTEQAIAAGGAALVADADALMMQASALLRDPARLAAMGAKALAFAAQHRGATPRTIAAIKPLLP
>NZ_CP011319.1|WP_071322059.1|621268_622291_+|lipopolysaccharide-heptosyltransferase-I
MTAQSGAQAPLKILLVRVSSLGDVLHNLPMVHDIARHYPDATIDWVVEEGYTSLVRLNSRVGTIFPFALRRWRKSLGKKETRAEIAAFFRSLRQTRYDYVFDTQGLLKTGIIMGAARLAPGGQKVGLANGSEGSGYEGISRLFHTKSIPLDPRTHAVARGRLVAAAALGYTVDTPADFGLPEVSGSEPRPDWMGEAPYAVYFHGTARDAKKWAPENWIALGHALSPMPILLPWGSPKEKAEAELLAASLPNARVLPKLSMSDATMLARRAALVIGVDTGLTHIAAAFLRPTVEIYADSPLWKTEGNWSPKIINLGDKGTPPGVPEVLAAAQRLLADYPPA
>NZ_CP011319.1|WP_071322058.1|619875_621264_+|phosphomannomutase/phosphoglucomutase
MLPLSRTIFKAYDIRGIIAQTLDAGVAHKIGQAFGAAALEKGEKRVVIGRDGRLSGPELTAALAQGLQAAGVDVIDLGVVATPMVYFGTNVLDTRSGIMVTGSHNPPNYNGFKMVLDGEAIHGEAIQALYHRIVAQDVGTTDIARLGSYATHDIRAAYLERILGDVKLARPIKIAVDCGNGVAGAFAGDLFRGLGCDVIELFCDVDGSFPNHHPDPAHPENLQDLIRCLAGTDAEIGIAFDGDGDRLGVVTKDGQIIYPDRQMMLFAADVLSRHPGAQILYDVKCTRHLAPWISKHGGVPLMCKTGHSLVKAELRATGAPLGGEMSGHIFFKDRWYGFDDGLYAAARLLEILTREADPSALLNSLPQSDSTPELQLELKEGENVALMDVLRRDALFPGNERIITIDGLRVEYADGFGLARSSNTTPVIVMRFEAETPAALARIQDQFKRVILAAKPDAVLPF
>NZ_CP011319.1|WP_071322057.1|619486_619795_+|H-NS-histone-family-protein
MDLSTMTMLELRKLDDGVKQELQGRERDDLNKAREQIMAIAQQAGIPLKQLILDGLHPRTGKVAVRYRHPDNAAEQWTGRGRQPLWVRQWVESGKSIDLLRV
>NZ_CP011319.1|WP_071322056.1|618093_618933_-|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MKTYFIGDLQGCHAQTVELIEQIQAAADGPYRLLFAGDLINRGPASLATLRHVHALARQGLADSVLGNHDLHLLAVANGIRPQHASDTLAEILDAPDREELIAWLRCRPLALAHDGHLLVHAGLLPQWSAQQALALSGEVSAMLRSDDWAGFLRTMYGNEPAAWRDDLQGADRLRCIVNAMTRLRFCTPDGVMDFKMKESGSAPPGSGLLPWFDVPGRRSAGDTVVFGHWSALGLQLRPHLIGLDSGCVWGGKLSAVCLEDRSLLQVACPAFQQHSGKQ
>NZ_CP011319.1|WP_071322055.1|617085_618006_-|AraC-family-transcriptional-regulator
MNPDTDRLARWLLGSLELDTAVLHVGQYCGRWRASTAGRELGSFHLVLDGHCYLHFDGAAPIALGPRDGVFLLRDLPHFLSPHSDPLQAVSAQAMLPLQAPTNGLATSLACGFFQFRGVASKLIVDSFPPYLLIRGDAPAFSAAASLFDLILGEAGGDPEQPSPLIARLVELLFFYLIRHVAQGEHVAAGLLSLLYRPEFSPLLERMLDAPADDWSIENMAKAACMSRASFCKHFASASGHSPAQFLLMLRMKIAARRLHDGASVERAAELVGYRSHAAFTRAFKRVTGEQPGAYRRDQRLRQLAS
>NZ_CP011319.1|WP_071322054.1|616412_616967_-|carboxymuconolactone-decarboxylase-family-protein
MSRLTLHTLDTAPADSRPFVEKAIANNGFLPNLIGVLANAPLALETYLTVSGINARASLSLMEREVVQITAARIHGCDFCIAGHSAISLKKAGQTPDIVRALQHGKPTGDAQLDAVAAFATAVIATRGAVADSEYQAFLAAGYNEQQALEVVLGISLATLCNFSNSLAGTPVNPQLTPYLPGAV
>NZ_CP011319.1|WP_071322053.1|615325_616411_-|acyl-CoA/acyl-ACP-dehydrogenase
MANLTHWLHMHADQLDQSSQLAETVLPALAGDKLLAIGVPQEHGGAGGDVRDAIDAIAKVAEQSVTAAFVFWGQRCFIEFLLQSGNRALAERRLPALLAGTQAGASGLSNAMKFLSGIEQLQITGARHQDGLLIDGGLAWVTNLRKAGFVAAAAVAPNDGAPPVIVAFDSSEPGVQRSDDLDLIALRGSNTASVKLAQVHIPAADIISDNAPAWLPQVRPSFLGMQCGLSIGLARASLAQAAQISAGSRNQLTPRIEALQSTLSTAVDTLLAGVHDGRFKTQAPAMFRLRIQLAELLQQALMLELQAMGGRAYLNAEQQGFARRWRESSFIPIVTPSLTQLQAALQLFDSQQAAKAAGAQA
>NZ_CP011319.1|WP_071322052.1|614522_615329_-|ABC-transporter-ATP-binding-protein
MTAAAEPQDWALQAQDLSFAYPGSAPVFRHVALGVRKREIVCLLGGSGCGKSSLLRVLAGLQPPSTGEIQFLGAPMREPDPRSALVFQQASLLPWLNVTGNAGFGLDFKHQPQLTREAHQARVAQAIDAVGLKGREKLYPSALSGGMAQRVALARALAREPELLFADEPFSALDAITRAEMQSLLVDVVHRWHTAVLLVTHDIDEAILVADRILLMGGKPGNIVREWPVAIDQPRIGHSADVIALKMDILDALQTLQRQDQQPAFAPL
>NZ_CP011319.1|WP_071322051.1|613260_614505_-|ABC-transporter-substrate-binding-protein
MSFQENNKPLHICASSDCDCGLTRRDFLRMSALATASVASPLLFAGDAMAQQGPKGDDQPVKIGYLPITDATPLLVAHARKLFEAEGLQAETPRLFRSWAQIIEAFVAGQVNVIHLLSPATLWVRYGAKFPAKVVAWNHVNGSALTVANEINKVSDLGGRTVAIPFWYSIHNILLQQILSANGLTPVTRARNAAIKPNEVNLIVLAPAEMVSALASKSIAGYIVAEPFNAAAENAGIGKILRFSGDVWKNHACCVTFLSERDINTRPEWAQKVTNAIVKAQLWTRSNQVDTAKLLSNVGEHRYTPHPLQVLTKVLATTDYAGYEKQGLIVHKNWQQRRIDFQPYPFASYTEELVRAIGRTKVEGDTRFLANLDPKFAARDLVDDRFVRKAITAVGGPAAFGLPANLLRSETVAV
>NZ_CP011319.1|WP_071322061.1|623764_624712_-|M48-family-metallopeptidase
MKTIKVGDQQLDLFAHDVSTSTPLAVRPTAPPAPPVVAPVHLAPPPVAPVSPIAVPVPAPPALPSPPRTADGPPLRQLQLGSHLVEFALRRSTRRSIGFMIDDNGLRVTAPKRVTLAEIDSAIRAKQGWIVSKLLERGERKVQRQQRAPMEWIDGATLPYLGGEITLRLHQAPRHRASFQRETNELHVWVTPAGSEQQLKEKVKAWFQHEARQLFEARLDLYADKLGVRYDSLSLSSAGTRWGSCTIERKIRLNWRLIHFALPLVDYVVAHELSHLLEMNHSPRFWATVESIYPDYDGAKQALRKRSQELPVLFA
>NZ_CP011319.1|WP_071322062.1|624756_625497_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MRNISLFLRSLLFMIIMIVATIVWACVCFFAAPLSYNKRYWVTSRWNVFILWCAKVICGIRYEVKGAENFPDAPAIVLSKHQSAWETIFLLPSLPRPLVYVFKKEILYIPFFGWAMALLRMIPIDRKQGKHAFKSVVAHGKRRLADGQWIIMFPEGTRIPVGQTGKYKSGGTRLAIATGAVVVPIAHNSGECWPKQSFLKRPGLITVSIGKPISPEGHTPDSMMQQVENWIESEMRVISPHAYNAG
>NZ_CP011319.1|WP_071322063.1|625513_626101_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MGIPALKLIILDRDGVINHDSPDFIKSPAEWLPIPGSLEAIARLNQAGYRVVIASNQSGIAREYFDMTVLNAIHQKMHTLAQQVGADIDAIFFCPHAGADNCDCRKPKPGMFHEISQRYNTSLKGVPTVGDSLRDLQAGFISGCTPYLVLTGKGEKTNETGGLPPGTQVFPDLAAVVGHLLKAPVVPAPTVAFSI
>NZ_CP011319.1|WP_071322064.1|626100_628203_-|glycine--tRNA-ligase-subunit-beta
MNQTLLIELLTEELPPKALAKLGAAFAAGIVNGLKSRDFLEADSVATSYASPRRLAVSITNVREVSPDKSIREKVLPVSVALDANGNGTPPLAKKLAALGFPELTLAELERAVDGKAESFFYTYTAPGSQLATGAQAALTEAAAKLPIPKLMSYQRPDGTTVQFVRPAHSLIALHGINVLPLTLLGLAAGRTTLGHRFLTDGAPITIAHAENYAASLILNASVIASNEERKERIRAQLLDKAGADQVLMPEALLDEVTALVEWPVVYECHFEEEFLAVPQECLILTMQTNQKYFALTDSDGKLRSRFLIVSNIATDTPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAARLPLLANVVYHNKLGTQAARTERVKSLAGAIAAKLHYDVALAERGALLAKADLLTDMVGEFPELQGIMGTYYARHDGEAEEVALAASEHYQPRFAGDSLPTTATGTAVALADKLETLVGIWSIGLAPTGDKDPFALRRHALGVLRMLLEKRLPLSIQGLLADAAAQFAAIPGFKDPVADVTTFMLDRLRGILRERGFSPNEIEAVVAQNPDRLDDIVQRLEAVQAFAALPESASLAAANKRITNILKKNEEAVSQVAAGGVNVALLQDEAEKKLAAAVSRVQPEIDAAFAKGDFAGTLQTLAQLRDDVDGFFNDVMVMAEDVALRNNRLALLSSLHGMMNRVADISKLAA
>NZ_CP011319.1|WP_071322065.1|628240_629155_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIILTLQTYWDKQGCALLQPYDMEVGAGTFHTGTFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRMQHYYQYQVVLKPAPENILDLYLGSLAALGLDLKQNDVRFVEDDWESPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGIERLAMYLQGVENVYDLVWTEWEENGTTKKLTYGDVFHQNEVEQSTYNFEHANTDLLFEQFGNYEAEAKRLIELQLTLPAYEKIMKASHSFNMLDARGAISVTERAAYIGRVRTLSRLVAQAYYDSRERLGFPMLPAADQSAA
>NZ_CP011319.1|WP_083412094.1|629305_630823_-|apolipoprotein-N-acyltransferase
MLTAAIAGAVAVLAFAPFGYWPLQILSLGVLFYQVLRAASVKSGALIGWAYGFGWCAAGTHWLYISMHRYGDMAAPIAVIAVALLALLMAIYVALAMGAAAWLRRRWVLSLPAMTLLILPSLWTLFEWTRGWLFTGFPWLATGYAHNTGPLSGFAPIVGAYGLGWLAALSAGALLLLTHRTRWNALGGLVALYAAGIGLQYVNWTHPVGRPITVRLLQGNVPQQQKFDPGFVLGALQMYQNAITSAPADLIATPETAVTVLPHQLPAGYLDNLATYAQQTGSTILVGMPVLDEQQRFYNAALGITPNSTPGPYYQYRKHHLVPFGEFVPPGLHWFVAMMAIPLGDMGRGAEVQAPLPVRDQLVLPNICYEDLFGEEIAGQLASAHRSGKQSASVLLNISNLAWFGDSIAIPQHLQISQMRSLETGRPMLRSTNTGATAVIDGKGVVQSLLPPEQQATLAAKVQGMGGMTPYILYGNKLVLALAALALLTAFLLSRAARRGAARQE
>NZ_CP011319.1|WP_071075558.1|630902_631781_-|CBS-domain-containing-protein
MPEHPSGVRTDVKPHRSLFERLTALISPEPENRAELLDVLHDAHERKLIDADALSMIEGVFQVSDLCARDIMIPRSQMDVIDISKPIEEWMPEVLSTAHSRFPAIEGERDKVIGILLAKDLLRYYAEETFDVRDMLRPAIFIPESKRLNVLLRDFRANHNHMAIVVDEYSGVAGLITIEDVLEQIVGDIEDEYDFDEAEDNILSLKEGQFGPRWRVKALTEIEQFNEEVGSHLVDDDVDTIGGLVSKYLGRMAHKGDIFDLGNLRFEVLRADARQVHVLLVERLPNVPELEL
>NZ_CP011319.1|WP_071322067.1|631897_632317_-|DUF4259-domain-containing-protein
MGTWATDAFGNDYAMDWAQDLHEYKTLELVETTLDNVIDSPQAELEAPFAAEALAALEVIARLLGNPGEDDPATAEVDEWVAACKKKVAPPLLDKARLAFERITADASELRQLWQDSEHYADWQADVADLRARVLGPEA
>NZ_CP011319.1|WP_071322068.1|632321_632786_-|rRNA-maturation-RNase-YbeY
MSEKNKLSLSVQYPDARLETLITRPKVRRWVKAALFAPAEFTIRFVDAEEGRSLNRDYREKDYATNVLTFAYNEGEELGDDEPTRADIILCTDVLEKEAQEQKKGVEEHTAHLIVHGVLHAQGYDHMDDEEASEMEGLETEILAKLGITDPYKE
>NZ_CP011319.1|WP_071322069.1|632769_633834_-|PhoH-family-protein
MKTKAPIQPHYFIPEPLDNTRLAHLCGPLDENLRQISAALDVTIFRRGEKFIVGGSNAARAVEILEQFYAIANKVVPLEEVQLALVEQRAGLSAASEHHANAPVSTFVEPDIASPVLKTRRSDLRGRTPHQIAYLRDILEHDISFGVGPAGTGKTYLAVACAVDALERDAVKRIILTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQVIEIAPLAYMRGRTLNHAFVILDEAQNTTVEQMKMFLTRIGFGSKAVVTGDVTQVDLHKSQTSGLIDAVHVLKDVRGIGFTQFNSTDVVRHPLVARIVDAYETAQAASADAAQLLPLLKPASAKNVRKK

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Crispr_ID: NZ_CP011319_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011319_3

3467749-3467843

Unclear

Consensus_repeat	Method
TCGGCCGCCTCTTCCAGGCGCGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP011319_3

>merge|NZ_CP011319|3|3467749-3467843|CRISPRCasFinder
TCGGCCGCCTCTTCCAGGCGCGGGATGCCTTCGAGCTTGAATTGCGCCTTGGCCAGGTCCATGCGCGCCTGCTCGGCCGCCTCTTCCAGGCGCGG

>NZ_CP011319|3|2|3467749-3467843|CRISPRCasFinder
TCGGCCGCCTCTTCCAGGCGCGG	GATGCCTTCGAGCTTGAATTGCGCCTTGGCCAGGTCCATGCGCGCCTGC
TCGGCCGCCTCTTCCAGGCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011319.1\|WP_071324066.1\|3478328_3479276_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP011319.1\|WP_083411870.1\|3463410_3463968_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP011319.1\|WP_071326518.1\|3469112_3470351_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236722
NZ_CP011319.1\|WP_071326516.1\|3458462_3459467_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP011319.1\|WP_071324054.1\|3462670_3463402_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP011319.1\|WP_071324055.1\|3464019_3464925_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP011319.1\|WP_071324061.1\|3472948_3473797_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NZ_CP011319.1\|WP_071326519.1\|3470479_3472705_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP011319.1\|WP_071324058.1\|3467049_3467397_+\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|377743
NZ_CP011319.1\|WP_071324063.1\|3474844_3475444_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP011319.1\|WP_071324062.1\|3473815_3474721_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP011319.1\|WP_071324060.1\|3468443_3469061_-\|peptidase-S16	unknown	unknown	gnl\|CDD\|225362
NZ_CP011319.1\|WP_071324067.1\|3479317_3481567_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP011319.1\|WP_071324056.1\|3464928_3465876_-\|cupin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372651
NZ_CP011319.1\|WP_071324065.1\|3476419_3478108_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP011319.1\|WP_071324053.1\|3461405_3462674_+\|voltage-gated-chloride-channel-family-protein	unknown	unknown	gnl\|CDD\|239654
NZ_CP011319.1\|WP_071324052.1\|3459598_3461194_+\|glutamate-decarboxylase	unknown	unknown	gnl\|CDD\|274791
NZ_CP011319.1\|WP_071324051.1\|3456122_3458072_-\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|225487
NZ_CP011319.1\|WP_071324064.1\|3475512_3476394_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP011319.1\|WP_071324057.1\|3465928_3466912_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752

Protein	Function_ID	Function_description	E-value
NZ_CP011319.1\|WP_071324066.1\|3478328_3479276_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.4297e-98
NZ_CP011319.1\|WP_083411870.1\|3463410_3463968_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.94049e-13
NZ_CP011319.1\|WP_071326518.1\|3469112_3470351_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	5.65555e-159
NZ_CP011319.1\|WP_071326516.1\|3458462_3459467_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP011319.1\|WP_071324054.1\|3462670_3463402_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.8809e-27
NZ_CP011319.1\|WP_071324055.1\|3464019_3464925_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.19618e-11
NZ_CP011319.1\|WP_071324061.1\|3472948_3473797_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
NZ_CP011319.1\|WP_071326519.1\|3470479_3472705_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.17815e-56
NZ_CP011319.1\|WP_071324058.1\|3467049_3467397_+\|DUF1294-domain-containing-protein	gnl\|CDD\|377743	pfam06961, DUF1294, Protein of unknown function (DUF1294). This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.	2.18124e-25
NZ_CP011319.1\|WP_071324063.1\|3474844_3475444_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	2.13905e-77
NZ_CP011319.1\|WP_071324062.1\|3473815_3474721_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.74467e-65
NZ_CP011319.1\|WP_071324060.1\|3468443_3469061_-\|peptidase-S16	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	1.31401e-32
NZ_CP011319.1\|WP_071324067.1\|3479317_3481567_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP011319.1\|WP_071324056.1\|3464928_3465876_-\|cupin-like-domain-containing-protein	gnl\|CDD\|372651	pfam13621, Cupin_8, Cupin-like domain. This cupin like domain shares similarity to the JmjC domain.	5.27856e-36
NZ_CP011319.1\|WP_071324065.1\|3476419_3478108_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.30062e-106
NZ_CP011319.1\|WP_071324053.1\|3461405_3462674_+\|voltage-gated-chloride-channel-family-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	0
NZ_CP011319.1\|WP_071324052.1\|3459598_3461194_+\|glutamate-decarboxylase	gnl\|CDD\|274791	TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A].	1.29951e-145
NZ_CP011319.1\|WP_071324051.1\|3456122_3458072_-\|CocE/NonD-family-hydrolase	gnl\|CDD\|225487	COG2936, COG2936, Predicted acyl esterases [General function prediction only].	2.68307e-125
NZ_CP011319.1\|WP_071324064.1\|3475512_3476394_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.99004e-89
NZ_CP011319.1\|WP_071324057.1\|3465928_3466912_-\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	5.71588e-90

>NZ_CP011319.1|WP_071324058.1|3467049_3467397_+|DUF1294-domain-containing-protein
MPYLILAVFVLAYLLASLLWHVPVLVAAVYGAMSVTCFAVYAIDKRAARTQAWRTPEKTLWLLGLLCGWPGAVLAQQWLRHKTSKTSFQVVFWITVALNMGGFAWLCMRYAQPGV
>NZ_CP011319.1|WP_071324057.1|3465928_3466912_-|chemotaxis-protein-CheB
MEALILIGASTGGMEALSCIFAALPATLPAPVLVVAHVGARKSILPDILGKTCSLPVRFAEGREPVRPGRILLAPPDRHMLVAIAAGQATIELTRGPKENHTRPAIDPLFRSAAAAFGPRAVGVILSGYLDDGTAGLQAIKACGGKVLVQEPQEAVAPSMPQSAIDHVDVDWRLPVAQIAPALLALVSGKPAPPQALQPAPHWIAVENRFARGVGNMEQLEKIAVPSTFTCPACQGTLWELHGQQPQRFRCHTGHSFTAQVLGELQNDKAEEAIWAAIRALQEKERLYLDLAAKAQAWLHPGTASEYGARARQAGEQADVLRRTLLA
>NZ_CP011319.1|WP_071324056.1|3464928_3465876_-|cupin-like-domain-containing-protein
MSVEKKLPPQSATAPGAARALPPRPPAEFSSPEAALARKLAREHKDAQVRGVTSIHAMREAIRRAARHLPAIAEVPRLGMLDAAAFRARAALGLPFLMSGLVKRWPLSGLAPGVLRERYSHVPVRARVGDYINTAFAPDRAMQDMSMGAYLDLVEEGQHALPPYLGNLELRELNSLCHWPAYFDKMGPPRFWVGPAGTVTPLHCDYDDNIFAQVWGSKRIFLSPPHHDAFLYPSEANAILFGSPFDPEAPDFQRFPLARQATMIECIVEPGDMLYVPAGWYHQVRALTFSLSSNRWARAVPFALHGEPALRRGVE
>NZ_CP011319.1|WP_071324055.1|3464019_3464925_+|DMT-family-transporter
MKTHASPPPALGLPELALIAITFIWGGTFLIVQHAVTVSGPLAFVAARFAVAAGIGALICRGQLRQLTKAELLTGMAIGVSIFGGYALQTYGLMHITSSKSAFITAFYVPIVPLVQWLAFKQRPHPAVWAAVALAFVGLLLLTGTDGLSMGFGKGELMTAVGAIAIALEIILISRVSPQLNILRVTIVQLATASLIALLLMPVMGEAPPALSQTFLLSVLALGCASALIQYVMNWAQKRISATKATLIYAGEPVWAGVIGRIAGERLPALAIVGAILIIGAGILSEWRPKRTPDAGKAVQP
>NZ_CP011319.1|WP_083411870.1|3463410_3463968_-|helix-turn-helix-transcriptional-regulator
MRSQAEAGGVLAHLSKNLRRLRLAAGLSQEELARLSGLSRRMLNGVEAGGTNISLANLDHVAAALNVAFVDLVQPPRQPHDSLRVLVWQSASQASQAVLLGAAPASRQVELWSWTLAPGERYDAQADPAGFSEMIYVLEGQLQLELAAGTKHLTTGDFLVFSSAQAYAYVNAGASTLRFTRNVAS
>NZ_CP011319.1|WP_071324054.1|3462670_3463402_+|class-I-SAM-dependent-methyltransferase
MTQNIYDNDAFFTAYGQLPRSVGGLDSAPEWPALRAMLPQLQGKQVLDLGCGYGWFCRWALDAGAARVLGVDVSEKMLAQARAMGERAAVSYARLDMEQLALPPASYDLVYSSLAFHYIERFDALLAAIRHGLKPGGKLVFSIEHPIFMAPRQPGWLTDAQGRKSWPVDSYQQQGTRVSDWLAPGVVKQHRTLGTTLNLLIQAGFQIEHVEEWGPTDEQLTQQPALAEERERPMLLLIGCGLG
>NZ_CP011319.1|WP_071324053.1|3461405_3462674_+|voltage-gated-chloride-channel-family-protein
MMTRRPAFLAALADLLLHLVKWLLIAFAVAVLAGTASAAFLFALDWATRTRLAHAWLLWLLPVAGFAVGWLYLRYGSKVEGGANMLIDEIHDPKNIIPLRMAPLVLGATVVSHLFGASVGREGTAVQMGGALADQLTRLFRLKNEDRRIILMAGISAGFASVFGTPLAGAIFGLEVLAIGRLRYEAMLPCLAAAVIADQVVLLWGPLLHIAHTHYAVPPVPAISAWTLGAMVIAGVLFGVTGKVFAQATHGLSGLMKRWVAYPPLRPLAGGLAVALAVWLLGTDRYIGLGIPTIVDALKGPLPAHDFLGKMAFTIVSLGTGFKGGEVTPLFYIGATLGNALGPLLHQPVTLLAAIGFVAVFAGAANTPIASTLMAMELFGAEIGVYAAIACVVAYLFSGHAGIYRAQRGGHAKRTASKELDT
>NZ_CP011319.1|WP_071324052.1|3459598_3461194_+|glutamate-decarboxylase
MTDTAIERLLQQHFSIDALQQAPAPLQQALRMLGGWLAAERSEAYPHTPYAELLTQLADTRPPAHGMAVADFLQELDTTVLANTAQLNHPQYIGHMTQALPWISVLAEAFTATLNQNQVKIETAYVSTLIEKQMLGWLHRQVYQQPDSVYAQAMAATSGALGNVVNGGTMGNLTALAVALEKQLPGTRKRGLFAAMQDAGHAGLAVIGSARSHYSVKKALATLGLGENALHLVAVDRDNRIDVAALEATIADLKLRKIKVVAMIGIAGTTETGAIDPLAAMAAIAARENIWFHVDAAWGGALLIAEQYRPLYDGIALADSVVIDGHKLLWVPMAQSMVLFKDSASLNLLKHNANYILRDNSGDLGQTSLEGSRRFDALKLWTSFKVLGVSGYTTLLQQAATLSGQLQDLLADQQDFELVTRSDTFILTYRYVPVHLRQRMEALLAGGQADAAAELNRQLNTLNAKLQNRQKAEGHSFVSRTVLESTRYPGPTNVLRVVMTNVKTRPHHLRAILAEQRAIGQALVAELGLQD
>NZ_CP011319.1|WP_071326516.1|3458462_3459467_+|tryptophan--tRNA-ligase
MASQSVILTGDRPTGPLHLGHFVGSLRDRVAYQNSYKQFIMLADAQALTDNMDDIDKVHRNVVEVALDYLAVGIDPTKTTVFIQSQIPELAELTFYYLNIVTVARLERNPTVKEEIRLRGFERDIPAGFLTYPASQAADITAFKAGVVPVGEDQIPMIEQTNEIVRRFNRMYNREVLMECKALVPDIGRLPGIDGKAKMSKSLGNTINLGATSAEITAAVKKVYTDPLHLRVEDPGHLEGNIAFTYLDAFDPEKAALAEMKAHYVRGGLGDSIVKKRLDVVLQELLAPIRARREEFAKDKGQVIQMLKEGTFKAREVAARTADEVKSALGLNYF
>NZ_CP011319.1|WP_071324051.1|3456122_3458072_-|CocE/NonD-family-hydrolase
MRVASPVRLTGLALALSTTLNSVFATPVLAQTPPMAPDIGAKLVMPDLNDYVKRVVMVPMRDGVKLYTVIVVPKGAQKAPIMLTRTPYNAARRAQRAASPSMLATLPQGDDTLVENGYIRVFQDVRGKYGSEGDYVMTRPVRGPLNNTKVDNVTDAWDTIDWLVKNVPETNGKVGMLGSSYEGHTVLMALVDPHPALKVAIPMSAMVDGWRGDDWFHNGAFRMPSLSYIAGQTSVRGGGESPALGVYDDYDAYLRIGSAGDYAKKFGIDKLTYTKKLFEHPAYDSYWQEQALDKILAKRPLIVPTMHVVGQWDQEDIYGPYATYSAMEGRDKRNNLNYLAIGPWRHSGVNYEGSSLGALKFDGDTARQFRAKVMQPFLNQYLKDGAPDANTAPVVSYQSGTNQWQRLQQWPLACETCDTKLTPIYLQDGYKLGFATPSGAADAAEGAFDEYVADPAKPVPFVPRPVRLNDGDVWKPWLVSDQRGYADRTDVLSYVSEPLKTAVRIAGAPMVNLFAATSGTDADWVVKLIDVYPDEVPSQPAMGGYQLGVAMDIFRGRYRDSFEHPTPIPAGKVERYRFALPNANHVFLPGHRIAVQIQSSWFPLYDRNPQNYVPNIFLADPGHYRKATQRVYHAAGAASAIELPIAPNE
>NZ_CP011319.1|WP_071324060.1|3468443_3469061_-|peptidase-S16
MTSIPLFPLNTVLYPDGYLPLQIFEVRYLDMIRKCIMGEQPFGVVRLLDGAEVRKPGQLETLAPVGTLARVIDWAAPLSGLLQIKCMGMERFHIVSSEQLKHGLWTARIETLPPDKAIPIPQEQQNVADALGALIRTLQEQKIPPEQMPLQPPYRLDECGWVANRWCELLSLTAMQKQLLLSQDNPVLRLELVQDMLTENGLLED
>NZ_CP011319.1|WP_071326518.1|3469112_3470351_-|DEAD/DEAH-box-helicase
MTFSSLGLIDPLVRKLDELGYAKPTPVQAQSIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQRLTLEGVVAPQCVRVLVLVPTRELAEQVYASFRSYGGNLPLRSFVAYGGVPIEPQISKLRKGLDVLVATPGRLLDLQTQGAVKFEQVQTLVLDEADRMLDLGFERELDLLLMTMPKQRQTLLFSATFSDAIRAMAKTMLKDPVSVEVSARNSTVKAVKQSVIVCDKKRKPELFLHLLKKKRWGQVLVFVKTRKGVEQLVNTLLEQGVRADSIHGDKTQPNRLRALARFKAAEVQVLVATDVAARGLDIDQLPIVVNFDLPTVAEDYIHRIGRTGRAGASGEAISLVCADEVELLSAVEALTRQTLKRAEEPGYEAEHRVPGTTAGGTIQKKAVKVLAPKAAERAKKRRFYK
>NZ_CP011319.1|WP_071326519.1|3470479_3472705_-|TonB-dependent-receptor
MPRRCLRLTILCSAVLLAWNVQAQQSEAPAADAAAAPLKAEKAEKSAAPAMQTVEVKGGGYDPRRDDTASKMVVSSEEILKYGDTSVTDVLKRLPGITVSGAAGRSGGEIRMRGLGSGYTQILLNGERAPAGFSLDTLSPDVIERIEILHAASAEYSTQSIAGTINVVLKKAVKTAQRDVKLGAGGGRDAFSSNGNLQLSDKDGIFSYSLAASFYRYDYHYANPARDLGYLPDGQQNLLRNSKGTGDGRSEGINMSPRLNWAFPGGDNLTAQFFLNLGRNESRTHSRTDTIMGLRPDYDTNDSDGGNHYVFGRTDLTWVRKLDGGARLELGLRVGLSNNSSDNHPLGRIDGVGLALDRTARVDASEKSVSSTGKYSSPLIPGHALSMGWDGGYSKRDEERWQRELALPGGRPPFNVDEDFNADIKRLALYAQDEWDITPRWSMYAGVRWEGIDTRSIGNTYDEVQQRSSVWSPLLQTLWKLPDTKGDQVRLALTRTYKAPATSSLIPRRMMSTNNSQTEPDREGNPNLKPELALGIDASYEHYWAEGALLSARASARRIDGYTRQGLLYINERWVSTPVNDGRATTQTLELEAKFPLRAVLAGPVPALDVRASVSRNWSQVEQVPGPDNRLDQQTPVSGNVGLDYKTPDGVLTTGGSFNFRNGGPVRITERQSAYTTPRRDLDIYALWKFNAKQQLRLAVSNLLAQDFESRTSYTDASGTIQRNSISPSSPQARATMEMKF
>NZ_CP011319.1|WP_071324061.1|3472948_3473797_+|phosphatidylserine-decarboxylase
MSDRLAVLPQYLLPKGALTNFAGRIAGAKGGAMTTRLIRWFVGRYNVNMDEALDPDITHYASFNDFFTRALRPDARPLAQADYVCPVDGRISQFGTIDKDQIFQAKGHSFSTTALVGGDAALAAQFEHGSFANLYLSPRDYHRIHMPCDGRLTRMIYVPGELFSVNPTTARGIPGLFARNERVVCVFETANGPFVMTLVGATIVGSMATVWHGVVNPPRTGQVRDWSYANDNVVLKQGDELGRFLLGSTVVMLFPKDSVQFNANWQPAGPVQLGEVMGKLPK
>NZ_CP011319.1|WP_071324062.1|3473815_3474721_-|LysR-family-transcriptional-regulator
MDIDPGDLLLFARVVECGSFSRAAVRVDLPKSTLSRRLSQLEAKLGERLLLRTTRKLALTEFGASLLEHARKVVEETEAAGALAQHRQAGPSGLLRISMPADFGDALMRQVLAEFVRRYPAISLELDLSARRVDLLEENFDLAIRMGNLPDDASLAARRVAFSTLALYASPQYTSVHGLPEHPDDLYGHDLLSLPRAVHGLVHWTLIRGKTTWERDLPVRLLANSPELLVRMACTGVGIAASTDRFAKAYVATGELVRVLPEWSFPLVTGWAVFPGRRLMPAKTRAFLDLMEEMYRTDAPV
>NZ_CP011319.1|WP_071324063.1|3474844_3475444_+|FMN-dependent-NADH-azoreductase
MNILQINSSARSTGSASTRLADALVARVQAGNPDAALVRRDLAAVPHPVLDEPTLQALFTPADKRTPEQAARIALDDALIAQVQAADVIVIGAPMYNFGITVQLKSWFDAIARANVTFKYTENGPVGLLTGKKVYVGLSRGGLHRDSAHDSQVPYLNTMFGFLGMTDVQYVYSEGMGMGPEAVAKAQAQADAEINAILV
>NZ_CP011319.1|WP_071324064.1|3475512_3476394_+|pirin-family-protein
MSDINTLSKPRAVERVIAGQAVMDGAGVKINRVLTQQLQRRLDPFLMLDNFASDKPNDYIAGFPEHPHRGFETVSYMITGRMRHRDSAGNEGLLTSGGVQWMTAGSGVVHSEMPEQEAGVMEGFQLWLNLPARDKMRTPWYRDFESSEIPRYTTDTDVVVQVIAGESHGVTGAVQRELTQPLYLDIDLPAGTSFEQPLPPGHNAFLYTFRGEVQVDGKAVPALRMAILANTPGSDGVRIEAPEGGRVILIAGQPLNEPIAQYGPFVMNTQAEVFQAVQDFREGKFGVTAAPAA
>NZ_CP011319.1|WP_071324065.1|3476419_3478108_-|methyl-accepting-chemotaxis-protein
MKMTLKAHLSVVIGFLSLLSIVIGLFGLYGMNKTNEGLKTAYEDRTVALEQVARIDSLLVRSRLQLAEALLDPVAAKIHAKAETIEATITEVNKIWNAYMATYLTPHEKLLADKFAVDREKMVREGLMPAVAALREGKIDGARQAEAHLQTLIPAMREGINALHKLQVDEAKKEYEESSARYVTLRTIIIAIIVLGALLAAVIGFFLIRNIYRQLGGEPEYAAHIVRSIAAGDLAVPVTTHSGDDHSLLYAMQIMQQNLAQAVGDIRESIDTIATASGQIAIGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAQSASNVALRGGDVVAQVVGTMGSINESARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAREIKELITHSVDAVDAGSKLVEQAGATMEEIVESVKRVTDVMSEITAASQEQTSGIEQINQAITQMDTVTQQNAALVEEAAAAAESLQDQAANLVQVVSIFKLAATGAASTAVAPVASLARGARRVAGNVKQLKRAARASVTTRAGHVFQAL
>NZ_CP011319.1|WP_071324066.1|3478328_3479276_+|cation-transporter
MHETTEHDATHLHAHLKGDAKHTHSFEGRSQSILAWALGLTLSFAGIEVAAGFLSNSLALISDAGHMVTDAAALGLALLAQLIARRPPSPRHSFGFGRAEALAAFVNGLAMLCVVGWICYEAVLRFSAPQTVQGGMVFVVAFIGLLINLVVAWVLSKDKQSVNTRAALVHVMGDLLGSVAAIVAGAVIYFTGWMQIDPLLSMLVSLLILKSTFGVLKESYHFLMEGVPMQIDYIAVGTDVEQVDGVIAVHDLHVWDMSPGQPALIGHVEIEHLDHWPKVLRAIKKMLLSKHGIDHITLQPETATMAGLHASDKTH
>NZ_CP011319.1|WP_071324067.1|3479317_3481567_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MVSISAPHSATSEQLVEGLSAPDSARVLDALAYATEAYGDKQTFAGRSALDFAIGVATTLAFLRSDAETRIAGLMFELTLLEPDTAADIEPRFGKQVCDLATGVRQLIRLRALTQAQHGSTGGRGKNAAQQAVAQVETLRKMLLAMASDMRVVLVRLAACVTTLRYFADLKLFNEMTREYGKETLDLYAPLANRLGIWQLKWELEDLSFRFIEPEAYKRIAKMLEEKRMMREGFVSSAILRLQTELASAGIQAEVFGRPKHIYSIWNKMRGKELDFTALYDVRAFRVIVADVKTCYTVLGVVHNIWTPIPKEFDDYISRPKPNGYQSLHTVVTAEDGRPLEVQIRTNEMHSFAEYGVAAHWRYKEEGGSNFAGQKYDEKIAWLRQLLAWKTEVADAVVGQEEIQREWVEKLKSATLDDRIFVMTPQARVLELPVGATPVDFAYHLHTDVGHRCRGAKVDGIMVPLNTQLKNGQTCEIITAKGAPGTAGPSRDWLSAGYAVSTRTRSKIRAWFHAIDMQETLAHGRALVEKSLQREGKTAVNLEALAQKLGFAKVDELFLSVGKDEFSLRHVEQALHDNGEVVVPEDAVLVGKSRASSVEQGAKSGVLVVGTEGLMTVLAKCCKPAPPDSIVGFVTRGKGVSIHRATCKNFEEMRAKAPERVIFTEWGSTGHDTVYPVDIFILAGDRQGLLRDISEIFSREKINVIGVNTQSAKGQARMTFTAEISSTAQLLKALNVIKDVSGVLEARRS

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Crispr_ID: NZ_CP011319_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011319_4

3916333-3916516

Orphan

Consensus_repeat	Method
CGCCAATGCCACCGATGCCGTGGCCCTG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP011319_4

>merge|NZ_CP011319|4|3916333-3916516|PILER-CR
CGCCAATGCCAGCGATGCGGCGGCGCTGGGCGTGGCCGCAAGCAACGCCGCCACGGCCGCCACGGCCGCCGCCAACCAGGCGGGCCTGACCGATGCCGTGGCCCTGACGATGGCCTCGGACGCCGCTGCCGGCGTCGCCGCCTGGGATGCGTCGATCGCCAATGCCACCGATGCCGTGGCCCTG

>NZ_CP011319|4|1|3916333-3916516|PILER-CR
CGCCAATGCCAGCGATGCGGCGGCGCTG	GGCGTGGCCGCAAGCAACGCCGCCACGGCCGCCACGGCCGCCGCCAACCAGGCGGGCCTG
ACCGATGCCGTGGCCCTGACGATGGCCT	CGGACGCCGCTGCCGGCGTCGCCGCCTGGGATGCGTCGATCGCCAATGCC
ACCGATGCCGTGGCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011319.1\|WP_156895054.1\|3923740_3925471_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274550
NZ_CP011319.1\|WP_071324391.1\|3928104_3928608_-\|DUF2199-domain-containing-protein	unknown	unknown	gnl\|CDD\|378329
NZ_CP011319.1\|WP_071324389.1\|3925467_3926637_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP011319.1\|WP_156894888.1\|3909332_3911615_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271323
NZ_CP011319.1\|WP_071324384.1\|3911830_3912211_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP011319.1\|WP_083411914.1\|3921978_3923295_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP011319.1\|WP_083411912.1\|3907761_3908517_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP011319.1\|WP_071324382.1\|3908586_3909336_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
NZ_CP011319.1\|WP_156894889.1\|3914454_3914604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011319.1\|WP_083411915.1\|3934311_3936495_+\|DUF4962-domain-containing-protein	unknown	unknown	gnl\|CDD\|377945
NZ_CP011319.1\|WP_071324393.1\|3929330_3930080_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP011319.1\|WP_071324385.1\|3912207_3913080_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP011319.1\|WP_156895053.1\|3906512_3907100_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP011319.1\|WP_071326571.1\|3907183_3907675_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP011319.1\|WP_083411913.1\|3913076_3914078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011319.1\|WP_071324395.1\|3931041_3933579_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP011319.1\|WP_071324390.1\|3926890_3928039_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP011319.1\|WP_071324379.1\|3904788_3906183_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP011319.1\|WP_071324392.1\|3928621_3929320_-\|YceH-family-protein	unknown	unknown	gnl\|CDD\|377312
NZ_CP011319.1\|WP_071324394.1\|3930283_3931027_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021

Protein	Function_ID	Function_description	E-value
NZ_CP011319.1\|WP_156895054.1\|3923740_3925471_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP011319.1\|WP_071324391.1\|3928104_3928608_-\|DUF2199-domain-containing-protein	gnl\|CDD\|378329	pfam09965, DUF2199, Uncharacterized protein conserved in bacteria (DUF2199). This domain, found in various hypothetical bacterial proteins, has no known function.	1.37328e-60
NZ_CP011319.1\|WP_156894888.1\|3909332_3911615_-\|hypothetical-protein	gnl\|CDD\|271323	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins. This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	2.79076e-39
NZ_CP011319.1\|WP_071324384.1\|3911830_3912211_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	8.47867e-29
NZ_CP011319.1\|WP_083411914.1\|3921978_3923295_+\|hypothetical-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.08158e-24
NZ_CP011319.1\|WP_083411912.1\|3907761_3908517_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.58991e-113
NZ_CP011319.1\|WP_071324382.1\|3908586_3909336_+\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	2.35005e-67
NZ_CP011319.1\|WP_071324389.1\|3925467_3926637_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.39825e-93
NZ_CP011319.1\|WP_083411915.1\|3934311_3936495_+\|DUF4962-domain-containing-protein	gnl\|CDD\|377945	pfam07940, Hepar_II_III, Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.	9.66807e-21
NZ_CP011319.1\|WP_071324393.1\|3929330_3930080_-\|serine-O-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	3.32262e-83
NZ_CP011319.1\|WP_071324385.1\|3912207_3913080_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.62131e-60
NZ_CP011319.1\|WP_156895053.1\|3906512_3907100_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.12695e-79
NZ_CP011319.1\|WP_071326571.1\|3907183_3907675_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.43569e-76
NZ_CP011319.1\|WP_071324395.1\|3931041_3933579_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP011319.1\|WP_071324390.1\|3926890_3928039_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.62811e-49
NZ_CP011319.1\|WP_071324379.1\|3904788_3906183_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP011319.1\|WP_071324392.1\|3928621_3929320_-\|YceH-family-protein	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	1.6462e-73
NZ_CP011319.1\|WP_071324394.1\|3930283_3931027_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	8.34214e-112

>NZ_CP011319.1|WP_156894889.1|3914454_3914604_+|hypothetical-protein
MANDQNEIECFKIETNIRVTARAEIEKHPHPDSGYRQASQSPVPRKTGK
>NZ_CP011319.1|WP_083411913.1|3913076_3914078_+|hypothetical-protein
MSISPMKKMQWLLRRELWEHKGMLLWTPAVIGIVMTLLGALMTIGTIAKTKTRTALTINGEEVSWSAIFNTRTFGPRRTEIIDAVANNYTYAAAPLFLALGFLVFFYCLSALHDDRRDRSVLFWKSLPISDTQTVLSKAIIALLVAPVIVAAAASITSLALVLILSGVLAANGIHVFADLASSPGLYLGPLRVFGLLPVYCLWALPTVGWLLMVSSWAKSKVFLWAVGVPLLLLILTVWAGKMTLTESDVSWIQMNVIGRALLGTLPGSWYLFEPELLPQMRALAEGGSHMTRLGVFSNSWSSLALPAVWLGAAVGAALLYAAIRLRRWREEG
>NZ_CP011319.1|WP_071324385.1|3912207_3913080_+|ABC-transporter-ATP-binding-protein
MNALNNDSVISARGLRKQYGKQVAVDGISFDIAPGRIVGLIGPNGSGKTTTLKAILGLTGFDGELSVLGRDPRLQRDALMDDVCFIADVAILPGWLRVRDAIDFVAGVHPRFDRSKAERYLAHTKLAPKMKVKAMSKGMIVQLHLALVMAIDARLLVLDEPTLGLDILYRKQFYQNLLEDYFDENKTIVITTHQIEEVEHILSDLMFIRDGKIVLASTMEEVGERYVEVMVGPQHVNPARALQPISERSVFGKSVMLFDGVARTQLAALGELRTPSLADLFVATMKGSYQ
>NZ_CP011319.1|WP_071324384.1|3911830_3912211_+|GntR-family-transcriptional-regulator
MSAEWNDNSPIYRQLKARVVGMMLDGVLQSGDALPSVRQVAADYQLNPITVSRAYQELVDDALVEKRRGLGMYVLEGARDKLLASERERFMREEWPAMLERITQLGLNLEQLLLASRQDGVKGEGA
>NZ_CP011319.1|WP_156894888.1|3909332_3911615_-|hypothetical-protein
MKAAMINRYDELHKLFRRAGCGVALLAVLSACGGGSGGGTATPPPVPPVDTPRYLLGGTVSGLLPGASVVLANGTDKVTVTANGAFSFAGKLAAGASYDGKVDSASAGLGCSIAQGAATMGSADVSTLAVRCLPIVLAGVQERIQRIDGMVQDAAGNSYFSDSSTQVIHKLAPDGSLSIYAGMPGKTGAVDGPAASATFYMSGGRAPLAIDGKANLYVADSCNGLVRKITPAGVVSTLAGKRRANCSGPQEGQDGDTAYADGAGTQARFGWITSMAMDRNDDVLLVDDGSAPVRRVTPAGVVSSINVLFAEPNGLPRAGLAGQIAVDANGVIYLSNSGGSKVYRFDRGVATLVAGNARTTGYDGKGANASFRGVRSMMFERSGNLLLADRDAIRRMTPDGEVTTVAGRVVPDATGKSLDWKNLALISSEDSGAMLVFDSSLQRLNRVDAGNRIATVPVMLSDAGSADGVGAAARVGNVRASTMCSDPAGNVYLLDAVGKVLRRLAPNGKLELYAGIAGRAGSDDGARLSATMASPVAIACGADGAVYVADRAPDAPAFNLRKINSDGVMSTIEQLPADTNSLQQYILAIDKDGYITWMEIFGEGIYRRPPGGVFSLFVSFDALTRALGDRDPGPQSVLPYSIVFDSTGEMYFDDYYHQVIFKANRSGSVTVFAGTLYSSKNIDGAPGVGSLSFAGMPSLAIDKADNLYVSGQDGVRKINPAGVISTPQLAWGNPIVDIVAFGNGTLYGYTARAIVQTPLP
>NZ_CP011319.1|WP_071324382.1|3908586_3909336_+|DUF72-domain-containing-protein
MHTHYIGTAGWSISSAAASHFPSAGSHLQRYARALSCVEINSSFYRPHQPATYARWADGVPDHFRFSVKLPRSITHERRLRDGAAELDRFTGEVLQLGTKLGCVLVQLPPSLQFDTAVAAAFFSALRQRFSGMLACEARHPSWFEEGATGLLTLQRITRVQADPPAGQPGPHVPTTEVAYLRLHGSPTIYYSDYPPAYLASLAACLREPAQAGSWCIFDNTAAGAALFNALDLQARLTDLPAAPAHSRA
>NZ_CP011319.1|WP_083411912.1|3907761_3908517_+|UDP-2,3-diacylglucosamine-diphosphatase
MPAALFISDLHLQSSHPRTSAAFLSFLEHHAQYAQALYLLGDLFEYWAGDDDLEDPFNARMTAAIRAVSDAGVHVYWIAGNRDFLVGSGFAAAAGATLLSEPHVATIAGRRIVLLHGDAECTKDVKYMEFRAMVRQPAWQKQFLSMPLAQRKTIIDGLRQSSREHNGEKSMDIMDVTPDAVAQVFAEHASTVMIHGHTHRPALHKVDDTLRYVLPDWECDVTPPEGPRGGWIAIDARGNITRHDLNGDIID
>NZ_CP011319.1|WP_071326571.1|3907183_3907675_+|peptidyl-prolyl-cis-trans-isomerase
MTSVIITTNLGKITAELDAEKAPKTVANFLAYMKAGHYDNTIFHRVIDGFMIQGGGFEPGMKQKPADTTVENEAKNGLKNDTYTLAMARTSDPHSASAQFFINIKNNSFLDYPGQDGWGYAVFGKVTDGKEVVDAIRAVKTSRAGMFADVPVTDVIIEKVEAA
>NZ_CP011319.1|WP_156895053.1|3906512_3907100_+|peptidyl-prolyl-cis-trans-isomerase
MFASLTLGGAVVAATPATPSAALDPTPHVALKTSMGEIVLELDQEKAPKSVANFLQYVKSGYYKGTVFHRVIDGFMIQGGGFDKNMKQKATKAPIKNEAQNGLQNVTYSIAMARTGDPHSATAQFFINVNDNGALDYPGRDGFGYTVFGKVVSGMDVVDKIKAVPVADKGPHQNVPVTPVLIESATLLKTAPAKL
>NZ_CP011319.1|WP_071324379.1|3904788_3906183_-|cysteine--tRNA-ligase
MSNLKIYNTLAREKQVFVPMEAGKVRMYVCGMTIYDYCHIGHARMMMAFDVIYRWLKASDFDVTYVRNITDIDDKIIRRAVENGETISQLTTRFTRYMDEDTAALGILTPDHTPRATEYVPQMLSLIEQLEAKNLAYQGVDGDVNYAVRNFPHYGKLSGKSLDDLRAGERVDVNTGKRDPLDFVLWKSSKESEPEEVKWDSKWGKGRPGWHIECSAMSCALLGEQFDIHGGGADLQFPHHENEIAQSEGAFGHTSVNYWIHNGFVRLDNEKMSKSLGNFFTIREVLQKYDAEVIRFFILRAHYRSPLNYSDVHLDDARLSLTRLYTALADVAVEEGAIDWSEAHAVRVREAMDDDFNTPLAVAALFDLATEVNKSKSPTLARQLKGLAGVLGLLERTPQQFLQATVGAAGGQDEAAGIEAAIAARSAAKKARDFAASDKIRADLLAAGIILEDKPDGSTNWRRA
>NZ_CP011319.1|WP_083411914.1|3921978_3923295_+|hypothetical-protein
MRSRSFPAIPLRRALWPGILPCIAAVLAAVAMATAAPDASAQSSTAWNFDQVLQQALQSHPAVQGKRSAQAAARADLDGAQWQRFPSLSAEVPTGSQETGGVVRIEQPLWSGGRIDAGIDAAGSRVDAAGAAIEEERLSLSLRVIAAYTEALRQTARVRSAETGLAEHQRLLDMIKRRVAQSVSSQTDQRLAESRAYQAANDVSSARQALENALAQLSQLAGKPVRLVSATGVGVGEPLPDASLERVMRQAIAYSPTLQRLDFEAQAADSEITMQRSAYMPKVVLRMEKPTGGINADNRTRAMLVLQAQPGAGLSAKAGVDAAVARREGARAAHDVAEREVRERFTLDWNEAEASRQRLGNAGEASTTSTQVFESYARQYVIGRKSWNDVLNAVREATQAQFSLEDTRAQAIAASLRLAAQTGTLAGRTAPAGTARAN
>NZ_CP011319.1|WP_156895054.1|3923740_3925471_+|ATP-binding-cassette-domain-containing-protein
MWLKKSVFVDAVLATALVTLLTMATSLFSMQVYDRVIPNQSFSTLWVLVVGVALSIGLEFILKQVRSRIVDHSCNDVDHELSEWFFQRMLGIRMEARPASVGTLAAQVKGFEMVRGVLTSTSLFVLTDVPFALIFLAMITIIGGWLVVVPLVALPLALVCGLMFQRAIQNHTRKNLNASNRKAGLLVEAVDGVETLKGSSAEWMMQARWAELVAETSHAEQNIRDYAALSQNITAAFQQLTNVALISMGAWFVAENQMTMGALMACTIISNRALMPIVQLPAVMVQWAHARASIDGLEQVISLPNEADNAQFALTPRSLDTGLRFERIRFTYGGAQKVALEVDNLAIRPGERVGLVGAIGSGKSTLLKLASGLYQPAEGKAYLGDVDMALLAPPVVREMVGYLPQETRLFSGTLRDNLLLGLADPGEEAILAAARRTGLIELILGQPRGLALAITEGGRGVSGGQRQLIAVTRLLLARPRIWLLDEPTGAMDAKTEARIVGLLGELAAEGVTMVATTHKNALLPLLDRLVVLQAGRVLLDGPRDVVLAKLSGKPQAVPASAPAPMVQPAAAQGAVA
>NZ_CP011319.1|WP_071324389.1|3925467_3926637_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MKLAKVETREEAKRGRLLIWSCAAALAGVIAWASWAELDQVTRANGQVIASSRNQIIQVADGGVLAELRVHEGSIVKKGELLARFDRTRAETSYLESTAKAAGLKAAVARLQAEVFGGAPKFPPELQAFPEFRANQLALFSKRQGAVQAEVSALESAMKLIKEELEMNLPLLETGDVSRAEVLKLRRQVVDIQAQITNRRNKYLQDSQTDMVKAQEDLAGVLQTVTQRKEQLGSTDIYAPTDGIVRNVRLTTLGGVAKPGEEILQIVPTDDDLIIEAKVKPADIAFIKPGLPTAVKLDAYDYGIYGRLRGTVSYISADTLSEDNKGNEQPYYRVQIKTSGRKLIGKNGEPILIQPGMTATVEINTGRKTVLRYLTKPITKTFSESMGER
>NZ_CP011319.1|WP_071324390.1|3926890_3928039_+|GGDEF-domain-containing-protein
MALDPSTTLILSTALAAAAALYLAVEWRGVREKSLLFWSAGFAVITVGCVLALLRTSGYLLIGIWFANGLLIAAHWLFLAGVARFTNMRLSRAWYLLGLAWLAMLLVPGAAWWSKVMFVIQSLLIAGISLRASFLLRPHGVSLSVGAVQLRYVLLLHGLFYFAKAASIVALDTFVDLAAFRGEVIQVSLVEGAMAIMLIALSMTGTERHRREERIEQLAARDPLTALYNRRALEQRAPGLLEQATPHSPGALLLIDIDNFKQVNDLHGHSAGDKLLVALSEMICNTLPQGALAARLGGDEFVILLRGASSDSVITLGNALRGLFGQMAQQAFFTPKAVTLSVGGTLFERPPAGLEALLELGDAALYASKRDGRNSVRVVRAA
>NZ_CP011319.1|WP_071324391.1|3928104_3928608_-|DUF2199-domain-containing-protein
MTFSFLCRSCGETHTGMPSFGADAPWLYEQMAPAERAARCQLDSDACIVDEEHCFVRATIDIPVHGHDEPFSWGVWVSLSGDSFDAWDACFNDAKRAHIGPFFGWLSTPLCVYPDTLNLKTRVHLRDDGVRPSIELEPTEHPLAVEQRDGITVERVAELYARLMHGG
>NZ_CP011319.1|WP_071324392.1|3928621_3929320_-|YceH-family-protein
MNTDVTAADKSSDNPNLLDPFEIRVLAVLAEKEALTPDSYPLSLNALTNGCNQLSSRDPVMALTEETVYDVLQRLMQRKFVNGITQAGARVAKYEHRMRIKWSLEQDKLAILTILMLRGLQTAGEIRSRSGRVHDFKSVAEVESGLQFLIDKYPPLVAKLAVAPGAKEPRYGHLLGGEEALARDETAAGYAGAVSAPQQGSRVAQLEQEVLQLRSDFDGLAAQFEAFRKQFE
>NZ_CP011319.1|WP_071324393.1|3929330_3930080_-|serine-O-acetyltransferase
MFHHLREDINSIIERDPAARNGWEVLTCYPGLHAIVMHGWAHWCWTRRMKWVGRFISYLGRIITGIEIHPGATIGRRVFIDHGFGVVIGETAIVGDDCTIYQGVTLGGTSLHSGSKRHPTLERGVIVGAGAQVLGSFTVGEYAKVGSNAVLLKPVPAGGTAVGNPAHIVQKDVNALREGSTAHLFAAYGVTPNGDDPLSKALQGLITHAVAQEQRIETILATLKAAGICCQGVPECDKFDSEQMNKLVD
>NZ_CP011319.1|WP_071324394.1|3930283_3931027_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MKNKMIFGFHAVTSRLRHEASSVEEIFVDASRVDGRMKDMIAAAKSAGVRVMPVDSSRLDKIVGTRRHQGVIAFASQLSLARNLDELLDAIDGPPLLLILDGITDPHNLGACLRVADGVGAHAVIVPKDRAVGLNATAAKVASGAAETVPYITVTNLARTMRELKDRGIWLIGTSDDGEKGLYEADFTGPTALVMGSEGEGMRRLTRDTCDMLVSIPMFGSVESLNVSVASGVCLYEARRQRIAKEG
>NZ_CP011319.1|WP_071324395.1|3931041_3933579_-|ribonuclease-R
MSQNTHTIPSREDILGIFRSVNAPLDPQSLGKTLQVHADSMDVLVRRLKAMERDGQLKSDAGGVFALADQSALVAGRVTSHRDGFGFVIPDDASADLFLPEKEMQKVLHGDKVMARIVGTDRRGRPEGTIVEVTQRANTHVIGRLIQENGTWVVAPEDQRIGQDILVTGSLGKAKAGQIVSVELTEQPMRFKQPVGKIVEVLGALDDPGMEIEIAVRKFNVPHIFSAAALKQAEKLPFEVRAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANCFRLIVAIADVSHYVKPNDALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVVSDKGELKAYQFYPAVIHSAARLTYDEVAAVLGNTKGPEAARRADILPHLQNLEAVYRALLKARTERGAIDFETTETYIVCNSAGKIEKIIPRTRNEAHKIIEECMLAANVCAADLLLRNKHPGTYRIHASPTKEKLTQVRTFLKQVGLNLTGGDTPSASDYQTLMQQIKMRPDAALLQTMLLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKLSDKTVLNTNVSNATRKQQAKDKAEGKPKKTDLTIWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGEEFTGTITGVTTFGVFVQLDTLFVEGLVHVTELGTDYFQYDDARHELRGERTGKRYQLTDRLTVQVARVDLETRKIDLRLVTDAELAGEEAPAKPNGSGKRKGEKKSMVKPGPATEQRHEIKTSVKAGHGSNGAKPAGKAQAKAAPKVAAPKAAPKGEPKRSKKPAAAPAAAAPRAAKTVSKSSKNKR
>NZ_CP011319.1|WP_083411915.1|3934311_3936495_+|DUF4962-domain-containing-protein
MALSLGAGASPAADWVSTRSSSPEIVKPAPEQVQLQVQNPPSFAWPRHGSYPAQYVVEIAPVGGAASSYTVSRNFLLPSSALPPGQYEWRVSPRATSPDWSDKRPFTIDSNSRNFVVPESSELASTVRAHPRPRQLPASFAQASAWDAAMDGKRRPFLNRLVSEVNLNTTAVASVNDGLWTTPNDGGQYGRIANAAGAVIRQMEAAALLFRLTQERRYLDEAIVRGDQLAALSPDGPTSYKAQDQVARMIALVLAKGADFLWLDLDLPRRSRWLSVAAQRLTPIYADLSAAGGRLDQSPMDSHGVEALGYLAATSTLLLDARPEAQAWFDFAVRSYMHIVHVWSGPEGGFANGSAYGQYTTDMQLQLWQPLAEATGVSLFNKPWAAGFSDYFMQFIPPNAPRHVFGDVHESKPDPALLKAYVARQATPAAAWYSSQPGAQENPITLLQAPYPLPADTIAPEAPPNAMLFPSIGWAAMHSDMSNPARTSVYFKSSPFGAFNHSHGDQNSLVINSGGKPLLIEAGYQDYYASPLSKSWYRQSRAHNAITFDGGKGQFIEGHYEMRYKNGKITTFTHATDLDYVEGDASAAYSNDLSLAKRQVWYSRLNDVVVVRDKLNSATARTFEWNIHALNTLYLYPNGRASIENGTASLCLQSLRPDEEQLSGFSAPNPPLEASQQHAAYIKTTPAMTAEFLIVLDVGCKSVPTSLQLVPGGRLLQIGTQTITLPQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011319_1	1.2\|78606\|25\|NZ_CP011319\|CRT	78606-78630	25	NZ_CP011319.1	79383-79407	0	1.0
NZ_CP011319_1	1.2\|78606\|25\|NZ_CP011319\|CRT	78606-78630	25	NZ_CP011319.1	79493-79517	0	1.0

1. spacer 1.2|78606|25|NZ_CP011319|CRT matches to position: 79383-79407, mismatch: 0, identity: 1.0

ggaaacaagcaatgccaatagtgtg	CRISPR spacer
ggaaacaagcaatgccaatagtgtg	Protospacer
*************************

2. spacer 1.2|78606|25|NZ_CP011319|CRT matches to position: 79493-79517, mismatch: 0, identity: 1.0

ggaaacaagcaatgccaatagtgtg	CRISPR spacer
ggaaacaagcaatgccaatagtgtg	Protospacer
*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011319_2	2.1\|623669\|25\|NZ_CP011319\|CRISPRCasFinder	623669-623693	25	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	119921-119945	4	0.84
NZ_CP011319_2	2.1\|623669\|25\|NZ_CP011319\|CRISPRCasFinder	623669-623693	25	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	5163-5187	4	0.84
NZ_CP011319_2	2.1\|623669\|25\|NZ_CP011319\|CRISPRCasFinder	623669-623693	25	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	82933-82957	4	0.84
NZ_CP011319_2	2.1\|623669\|25\|NZ_CP011319\|CRISPRCasFinder	623669-623693	25	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	263486-263510	4	0.84
NZ_CP011319_1	1.1\|78551\|32\|NZ_CP011319\|CRT	78551-78582	32	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	478901-478932	9	0.719

1. spacer 2.1|623669|25|NZ_CP011319|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 4, identity: 0.84

ggcctgcgcgtaatccgacaggcga	CRISPR spacer
gatctgcgcgtattccgacaggcgg	Protospacer
*..********* ***********.

2. spacer 2.1|623669|25|NZ_CP011319|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

ggcctgcgcgtaatccgacaggcga	CRISPR spacer
gatctgcgcgtattccgacaggcgg	Protospacer
*..********* ***********.

3. spacer 2.1|623669|25|NZ_CP011319|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.84

ggcctgcgcgtaatccgacaggcga	CRISPR spacer
gatctgcgcgtattccgacaggcgg	Protospacer
*..********* ***********.

4. spacer 2.1|623669|25|NZ_CP011319|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 4, identity: 0.84

ggcctgcgcgtaatccgacaggcga	CRISPR spacer
gatctgcgcgtattccgacaggcgg	Protospacer
*..********* ***********.

5. spacer 1.1|78551|32|NZ_CP011319|CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaccaagaaaagccatagcgattaggccgc	CRISPR spacer
aggcggattaaaagtcatagtgattaggccgc	Protospacer
.*.   *  *****.*****.***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

230557 : 238949

Escherichia_phage(42.86%)

portal,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083411580.1\|230557_231508_+\|portal	phage portal protein	E5E3X1	Burkholderia_phage	6.5e-116	63.5
WP_071321778.1\|231504_231720_+	hypothetical protein	NA	NA	NA	NA
WP_071321779.1\|232419_233061_+	DUF4760 domain-containing protein	A0A1B1P9E5	Acinetobacter_phage	7.2e-10	31.4
WP_071321780.1\|233469_234150_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_071321781.1\|234323_235343_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.6e-80	47.1
WP_071321782.1\|235455_236340_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.8e-27	32.7
WP_071321783.1\|236393_236939_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.4e-51	54.1
WP_071321784.1\|236976_237870_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.2e-101	64.0
WP_071321785.1\|237866_238949_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.1e-86	50.2

DBSCAN-SWA_2

1385239 : 1439866

Burkholderia_phage(36.36%)

head,plate,tail,integrase,transposase,portal,holin,terminase,capsid

attL 1399420:1399439|attR 1409402:1409421

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083411664.1\|1385239_1386379_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_035820921.1\|1386375_1386582_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_156894706.1\|1386604_1386880_-	hypothetical protein	NA	NA	NA	NA
WP_071322618.1\|1386876_1387098_-	hypothetical protein	NA	NA	NA	NA
WP_083411665.1\|1387240_1389079_-	replication endonuclease	A4JWW0	Burkholderia_virus	8.7e-109	42.8
WP_071322619.1\|1389068_1389422_-	hypothetical protein	NA	NA	NA	NA
WP_071322620.1\|1389523_1389919_-	hypothetical protein	NA	NA	NA	NA
WP_071322621.1\|1390039_1390303_-	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	1.3e-13	45.6
WP_083411666.1\|1390299_1390488_-	hypothetical protein	A4PE59	Ralstonia_virus	1.7e-07	55.6
WP_071322622.1\|1390536_1390734_-	hypothetical protein	E5E3U0	Burkholderia_phage	3.4e-11	60.4
WP_071322623.1\|1390744_1390948_-	hypothetical protein	NA	NA	NA	NA
WP_083411667.1\|1391028_1391478_+	helix-turn-helix transcriptional regulator	A0A1S5NPU3	Burkholderia_phage	1.8e-23	42.7
WP_156894708.1\|1391474_1391825_+	hypothetical protein	NA	NA	NA	NA
WP_156894709.1\|1391875_1392541_+	hypothetical protein	A4PE55	Ralstonia_virus	1.8e-11	28.7
WP_071322624.1\|1392572_1393817_-	phage late control D family protein	K4PAY4	Burkholderia_phage	2.1e-82	49.8
WP_071322625.1\|1393813_1394422_-	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	2.9e-37	58.3
WP_083411668.1\|1394437_1397278_-\|tail	phage tail protein	A4PE52	Ralstonia_virus	2.9e-236	50.7
WP_071650284.1\|1397308_1397422_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_071322627.1\|1397430_1397739_-\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	3.1e-19	54.8
WP_071322628.1\|1397776_1398286_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	3.9e-51	56.2
WP_071322629.1\|1398343_1399519_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	9.1e-152	67.8
1399420:1399439	attL	NA	NA	NA	NA
WP_071322630.1\|1399524_1399758_-	hypothetical protein	NA	NA	NA	NA
WP_071322631.1\|1399758_1401288_-	hypothetical protein	M1TAS6	Escherichia_phage	5.3e-67	43.5
WP_071326286.1\|1401284_1401884_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	2.1e-67	62.4
WP_071322632.1\|1401897_1402809_-\|plate	baseplate assembly protein	A0A077K9X9	Ralstonia_phage	1.6e-79	57.5
WP_071322633.1\|1402805_1403150_-	oxidoreductase	E5E3V5	Burkholderia_phage	4.7e-24	52.1
WP_071322634.1\|1403146_1403809_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	7.1e-29	39.0
WP_156894710.1\|1403904_1404816_-	hypothetical protein	NA	NA	NA	NA
WP_071322635.1\|1404954_1405422_-	phage virion morphogenesis protein	R4JJX8	Burkholderia_phage	3.5e-30	50.0
WP_071322636.1\|1405418_1405907_-\|tail	phage tail protein	E5FFH7	Burkholderia_phage	6.6e-32	52.7
WP_156895015.1\|1405890_1406352_-	lysozyme	NA	NA	NA	NA
WP_071322638.1\|1406399_1406960_-	hypothetical protein	G0YQI3	Erwinia_phage	1.7e-44	53.5
WP_035820867.1\|1406959_1407331_-	hypothetical protein	NA	NA	NA	NA
WP_034778648.1\|1407395_1407611_-	hypothetical protein	A0A1I9KG34	Aeromonas_phage	4.7e-06	46.6
WP_071322639.1\|1407610_1408114_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	7.6e-31	49.1
WP_071322640.1\|1408221_1408938_-\|integrase	integrase	A4PE31	Ralstonia_virus	4.2e-43	45.7
WP_071322641.1\|1408937_1409957_-\|capsid	phage major capsid protein, P2 family	E5E3W8	Burkholderia_phage	5.3e-116	62.3
1409402:1409421	attR	NA	NA	NA	NA
WP_083411669.1\|1410006_1410795_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	1.3e-58	49.5
WP_071326287.1\|1410931_1412743_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	4.1e-236	67.0
WP_083411670.1\|1412658_1413804_+\|portal	phage portal protein	K4NZV0	Burkholderia_phage	1.8e-128	60.4
WP_071322643.1\|1413800_1414016_+	hypothetical protein	NA	NA	NA	NA
WP_156894711.1\|1414412_1414859_+	hypothetical protein	NA	NA	NA	NA
WP_071322645.1\|1414869_1415508_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	1.4e-37	41.0
WP_156894712.1\|1415664_1417002_-	hypothetical protein	NA	NA	NA	NA
WP_083411671.1\|1417103_1417640_-	DUF4145 domain-containing protein	Q7Y4L7	Streptococcus_phage	1.2e-13	35.0
WP_071322647.1\|1418640_1418886_-	hypothetical protein	NA	NA	NA	NA
WP_071326289.1\|1419177_1420560_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_071322648.1\|1421168_1423181_+	S9 family peptidase	NA	NA	NA	NA
WP_071322649.1\|1423299_1423590_+	hypothetical protein	NA	NA	NA	NA
WP_071322650.1\|1423667_1424201_-\|tail	phage tail protein	A0A218M5J9	Arthrobacter_phage	3.5e-10	28.6
WP_071322651.1\|1424237_1424771_-\|tail	phage tail protein	E3T4R8	Cafeteria_roenbergensis_virus	1.3e-17	35.9
WP_071322652.1\|1424877_1425411_-\|tail	phage tail protein	E3T4R8	Cafeteria_roenbergensis_virus	7.8e-10	34.9
WP_083411672.1\|1425638_1431167_+	autotransporter domain-containing protein	G9FH37	Rhodococcus_phage	1.3e-09	45.2
WP_071322654.1\|1431246_1432215_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_071322655.1\|1432320_1433034_-	glycosyltransferase	NA	NA	NA	NA
WP_071322656.1\|1433030_1433675_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_071322657.1\|1433671_1434442_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_071322658.1\|1434443_1435487_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_156894713.1\|1435612_1436218_-	hypothetical protein	NA	NA	NA	NA
WP_071322660.1\|1436904_1438992_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_156894714.1\|1439050_1439866_-\|holin	choline dehydrogenase	NA	NA	NA	NA

DBSCAN-SWA_3

4325421 : 4332389

Burkholderia_phage(50.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071324672.1\|4325421_4325910_+\|tail	phage tail protein	E5FFH7	Burkholderia_phage	1.5e-31	49.7
WP_071324673.1\|4325906_4326374_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	1.3e-32	48.7
WP_156894910.1\|4326696_4327023_+	hypothetical protein	NA	NA	NA	NA
WP_156894911.1\|4327019_4328279_+	hypothetical protein	NA	NA	NA	NA
WP_083411944.1\|4328534_4328906_+	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	7.3e-23	49.6
WP_156894912.1\|4329046_4330297_+	DUF4427 domain-containing protein	NA	NA	NA	NA
WP_071326613.1\|4330477_4331140_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	2.5e-29	39.9
WP_071324676.1\|4331136_4331481_+	oxidoreductase	E5E3V5	Burkholderia_phage	1.8e-23	50.4
WP_071324677.1\|4331477_4332389_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.9e-74	52.2

DBSCAN-SWA_4

4850067 : 4930714

Burkholderia_phage(26.47%)

head,plate,tail,integrase,portal,tRNA,terminase,capsid

attL 4928834:4928857|attR 4940840:4940863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071325040.1\|4850067_4850994_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_071326655.1\|4851068_4853300_-	TonB-dependent receptor	NA	NA	NA	NA
WP_071325041.1\|4853825_4856501_+	PAS domain-containing protein	NA	NA	NA	NA
WP_071325042.1\|4856493_4857387_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	2.0e-66	49.6
WP_071325043.1\|4857504_4857945_-	DUF695 domain-containing protein	NA	NA	NA	NA
WP_156894934.1\|4857989_4858649_-	hypothetical protein	NA	NA	NA	NA
WP_083412178.1\|4858800_4859667_-	hypothetical protein	NA	NA	NA	NA
WP_156894935.1\|4859883_4860762_+	nucleoside hydrolase	NA	NA	NA	NA
WP_071325047.1\|4860776_4861967_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_071325048.1\|4862073_4863075_-	PHB depolymerase family esterase	NA	NA	NA	NA
WP_083411980.1\|4863192_4865403_-	TonB-dependent receptor	NA	NA	NA	NA
WP_083411981.1\|4865550_4866360_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_156895063.1\|4866476_4867100_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_071325051.1\|4867213_4868179_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_083411982.1\|4868398_4869169_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	2.0e-14	36.4
WP_071325052.1\|4869308_4869737_-	hypothetical protein	NA	NA	NA	NA
WP_071325053.1\|4869864_4870359_+	hypothetical protein	NA	NA	NA	NA
WP_071325054.1\|4870409_4870931_+	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_071325055.1\|4870970_4871489_+	hypothetical protein	NA	NA	NA	NA
WP_071325056.1\|4871492_4872209_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_071325057.1\|4872371_4873676_+	MFS transporter	NA	NA	NA	NA
WP_083411983.1\|4873733_4874162_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_071325059.1\|4874597_4876178_+	isocitrate lyase	NA	NA	NA	NA
WP_071325060.1\|4876446_4877079_+	LysE family translocator	NA	NA	NA	NA
WP_071325061.1\|4877444_4879061_-	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_156894936.1\|4879050_4879272_-	hypothetical protein	NA	NA	NA	NA
WP_156894937.1\|4879271_4880114_-	HNH endonuclease	NA	NA	NA	NA
WP_156894938.1\|4880747_4884926_-	hypothetical protein	NA	NA	NA	NA
WP_156894939.1\|4885385_4886738_+	hypothetical protein	NA	NA	NA	NA
WP_034760447.1\|4886974_4887175_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_071325066.1\|4887311_4888178_-\|integrase	integrase	NA	NA	NA	NA
WP_156894940.1\|4889126_4889306_-	hypothetical protein	NA	NA	NA	NA
WP_071325067.1\|4889298_4890609_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1V0E8G8	Vibrio_phage	1.8e-63	31.9
WP_156894941.1\|4891280_4891775_-	hypothetical protein	NA	NA	NA	NA
WP_071325068.1\|4892166_4892382_-	hypothetical protein	NA	NA	NA	NA
WP_156894942.1\|4892378_4893524_-\|portal	phage portal protein	K4NZV0	Burkholderia_phage	7.8e-124	58.3
WP_071326658.1\|4893439_4895251_-\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	1.0e-234	66.7
WP_156894943.1\|4895387_4896176_+\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	1.1e-57	47.6
WP_071325071.1\|4896224_4897241_+\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	2.3e-119	63.4
WP_071325072.1\|4897244_4897961_+\|integrase	integrase	K4NX86	Burkholderia_phage	6.7e-41	45.5
WP_071325073.1\|4898064_4898571_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	7.6e-31	49.1
WP_071325074.1\|4898570_4898780_+\|tail	phage tail protein	A0A1W6JT40	Escherichia_phage	1.0e-05	42.4
WP_071325075.1\|4898825_4899197_+	hypothetical protein	NA	NA	NA	NA
WP_071325076.1\|4899196_4899757_+	hypothetical protein	A0A0E3JI96	Rhodoferax_phage	9.6e-43	50.0
WP_156895064.1\|4899729_4900266_+	lysozyme	NA	NA	NA	NA
WP_071325078.1\|4900249_4900738_+\|tail	phage tail protein	E5FFH7	Burkholderia_phage	4.3e-31	51.9
WP_071325079.1\|4900734_4901202_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	2.0e-33	50.0
WP_071325080.1\|4901514_4902312_+	hypothetical protein	NA	NA	NA	NA
WP_071325081.1\|4902308_4903058_+	hypothetical protein	NA	NA	NA	NA
WP_071325082.1\|4903181_4903844_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	1.6e-28	39.9
WP_071325083.1\|4903840_4904185_+	oxidoreductase	E5E3V5	Burkholderia_phage	1.4e-23	51.3
WP_071325084.1\|4904181_4905093_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.9e-79	56.2
WP_071326659.1\|4905106_4905706_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	1.7e-61	63.5
WP_071325085.1\|4905702_4907232_+	hypothetical protein	M1TAS6	Escherichia_phage	4.0e-67	43.8
WP_156894944.1\|4907232_4907466_+	hypothetical protein	NA	NA	NA	NA
WP_071325086.1\|4907471_4908647_+\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	4.5e-151	67.3
WP_071325087.1\|4908697_4909207_+\|tail	phage major tail tube protein	R4JEU1	Burkholderia_phage	4.8e-49	58.6
WP_071325088.1\|4909244_4909553_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.1e-19	53.2
WP_083411985.1\|4909561_4909675_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	6.0e-05	55.6
WP_071325089.1\|4909954_4912552_+	hypothetical protein	A4PE52	Ralstonia_virus	2.1e-172	42.8
WP_071325090.1\|4912567_4913176_+\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	2.9e-37	58.3
WP_071325091.1\|4913172_4914435_+	phage late control D family protein	K4PAY4	Burkholderia_phage	3.7e-82	48.9
WP_156894945.1\|4914497_4915187_-	hypothetical protein	A4PE55	Ralstonia_virus	7.5e-13	34.4
WP_083411986.1\|4915288_4915714_-	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	3.1e-25	43.8
WP_083411987.1\|4916026_4916224_+	hypothetical protein	E5E3U0	Burkholderia_phage	2.6e-11	62.3
WP_083411988.1\|4916272_4916461_+	hypothetical protein	A4PE59	Ralstonia_virus	1.7e-07	57.4
WP_071325093.1\|4916457_4916721_+	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	5.7e-14	45.7
WP_071325094.1\|4916841_4917243_+	hypothetical protein	NA	NA	NA	NA
WP_071325095.1\|4917344_4917563_+	hypothetical protein	NA	NA	NA	NA
WP_071325096.1\|4917562_4917988_+	hypothetical protein	NA	NA	NA	NA
WP_083411989.1\|4917939_4919757_+	replication endonuclease	A4JWW0	Burkholderia_virus	4.6e-86	41.2
WP_071325098.1\|4919807_4920014_+	hypothetical protein	NA	NA	NA	NA
WP_083411990.1\|4919997_4920231_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_083411991.1\|4920214_4921267_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.6e-22	30.4
WP_156894946.1\|4921599_4922685_-	hypothetical protein	NA	NA	NA	NA
WP_071325101.1\|4923145_4925152_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	7.3e-85	39.4
WP_071325102.1\|4925460_4926075_+	YqhA family protein	K4K6D8	Caulobacter_phage	1.3e-19	31.1
WP_071325103.1\|4926186_4927731_+	fumarate hydratase	NA	NA	NA	NA
WP_071325104.1\|4927795_4928641_+	glutamate racemase	NA	NA	NA	NA
4928834:4928857	attL	NA	NA	NA	NA
WP_071325105.1\|4928962_4930714_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071325105.1\|4928962_4930714_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4940840:4940863	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011319

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection