CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017769	Myroides sp. ZB35 chromosome, complete genome	9 crisprs	cas3,csa3,RT,DEDDh,WYL,cas13b,Csx27	2	10	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017769_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_1

1508526-1508631

Orphan

Consensus_repeat	Method
TTGTGGTTACTGTGTTTGACACGCAAGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_1

>merge|NZ_CP017769|1|1508526-1508631|CRISPRCasFinder
TTGTGGTTACTGTGTTTGACACGCAAGATATGCTTCTCTACTTTATGTATGTTGTGGAGTTGTATGTGTAAATTTTATTGTGGTTACTGTGTTTGACACGCAAGAT

>NZ_CP017769|1|1|1508526-1508631|CRISPRCasFinder
TTGTGGTTACTGTGTTTGACACGCAAGAT	ATGCTTCTCTACTTTATGTATGTTGTGGAGTTGTATGTGTAAATTTTA
TTGTGGTTACTGTGTTTGACACGCAAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006266183.1\|1521813_1522521_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP017769.1\|WP_006257596.1\|1524788_1525316_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|237744
NZ_CP017769.1\|WP_006266170.1\|1499862_1500339_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP017769.1\|WP_083387840.1\|1504553_1505648_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP017769.1\|WP_006257622.1\|1499211_1499685_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP017769.1\|WP_006257597.1\|1524245_1524776_-\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP017769.1\|WP_006266177.1\|1507132_1507972_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP017769.1\|WP_071307144.1\|1522613_1523369_-\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP017769.1\|WP_071307145.1\|1523650_1524181_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|180911
NZ_CP017769.1\|WP_071307136.1\|1505826_1506453_+\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|215002
NZ_CP017769.1\|WP_071307143.1\|1520063_1521338_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP017769.1\|WP_071307142.1\|1518922_1520062_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP017769.1\|WP_006262638.1\|1502927_1504106_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP017769.1\|WP_071307137.1\|1506454_1506952_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239519
NZ_CP017769.1\|WP_006266172.1\|1502072_1502843_-\|DUF3050-domain-containing-protein	unknown	unknown	gnl\|CDD\|378614
NZ_CP017769.1\|WP_006262636.1\|1500414_1501134_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP017769.1\|WP_006266178.1\|1508840_1509800_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_CP017769.1\|WP_006257607.1\|1513573_1514767_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181244
NZ_CP017769.1\|WP_071307138.1\|1509796_1513528_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP017769.1\|WP_006257619.1\|1501289_1502006_-\|3-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|236074

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006266183.1\|1521813_1522521_-\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	6.57997e-59
NZ_CP017769.1\|WP_006257596.1\|1524788_1525316_-\|30S-ribosomal-protein-S16	gnl\|CDD\|237744	PRK14521, rpsP, 30S ribosomal protein S16; Provisional.	4.3679e-68
NZ_CP017769.1\|WP_006266170.1\|1499862_1500339_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	4.62586e-05
NZ_CP017769.1\|WP_083387840.1\|1504553_1505648_+\|redoxin-domain-containing-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	3.76328e-08
NZ_CP017769.1\|WP_006257622.1\|1499211_1499685_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	6.83011e-50
NZ_CP017769.1\|WP_006257597.1\|1524245_1524776_-\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.8755e-32
NZ_CP017769.1\|WP_006266177.1\|1507132_1507972_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.96905e-61
NZ_CP017769.1\|WP_071307144.1\|1522613_1523369_-\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	3.50195e-27
NZ_CP017769.1\|WP_071307145.1\|1523650_1524181_-\|adenylate-kinase	gnl\|CDD\|180911	PRK07261, PRK07261, DNA topology modulation protein.	3.55878e-36
NZ_CP017769.1\|WP_071307136.1\|1505826_1506453_+\|chloramphenicol-acetyltransferase	gnl\|CDD\|215002	smart01059, CAT, Chloramphenicol acetyltransferase. Chloramphenicol acetyltransferase (CAT).catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT. evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see ). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen.	1.13271e-72
NZ_CP017769.1\|WP_071307143.1\|1520063_1521338_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP017769.1\|WP_071307142.1\|1518922_1520062_-\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP017769.1\|WP_006262638.1\|1502927_1504106_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
NZ_CP017769.1\|WP_071307137.1\|1506454_1506952_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239519	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.	1.33007e-28
NZ_CP017769.1\|WP_006266172.1\|1502072_1502843_-\|DUF3050-domain-containing-protein	gnl\|CDD\|378614	pfam11251, DUF3050, Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.	8.00248e-147
NZ_CP017769.1\|WP_006262636.1\|1500414_1501134_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.06592e-121
NZ_CP017769.1\|WP_006266178.1\|1508840_1509800_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	5.06635e-103
NZ_CP017769.1\|WP_006257607.1\|1513573_1514767_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181244	PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.	2.63761e-176
NZ_CP017769.1\|WP_071307138.1\|1509796_1513528_-\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP017769.1\|WP_006257619.1\|1501289_1502006_-\|3-ketoacyl-ACP-reductase	gnl\|CDD\|236074	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	1.66728e-128

>NZ_CP017769.1|WP_006266177.1|1507132_1507972_-|DUF4349-domain-containing-protein
MKKTLKLLTLMLFITLASCSKSAEYGEASAVALEDISTTDAAAETTTEAPQSTDSTQDITVPERMIVKEGNIRFETSNAQETRANIVASSKKLNGYLSQDTSNVYGNRTEHTIVIRVPAKNFETLLEGVTQTATKVDSKNINALDVTEEFIDIEARIKTKKEIEERYKELLKRANTIDDILRIERELGTLRADIESFEGRLKYLKSRISLSTLTVTFYEKGESTTGFGYEVSSAFGSGWSNLLSFVIGLFYIWPFILISIGLILIIRRIRKRRKQNKIN
>NZ_CP017769.1|WP_071307137.1|1506454_1506952_+|NUDIX-domain-containing-protein
MSTTAVPLGIKRIATLCVLRNGNNFMLLKRLKEPNKDTYTPVGGKIEPYETPEEGVIRETFEETGIRVDKVKFCGILTETSPVKYNWLSYVYVADIDVVTPPDCNEGTLEWIAYEDLLNVPTPKTDWFIYKYILENKPFVFHALYDGDLNLLEMKEEISNEELGI
>NZ_CP017769.1|WP_071307136.1|1505826_1506453_+|chloramphenicol-acetyltransferase
MRTKIDTTKWERGEQYAFFKQFTEPFFGITVQVDCTTVYNRAKANEDSFFLTYLHDALRAANEVEVFRYRIVDNEVYLYDEVHASPTINRPNGTFGFAYMNYYADKQIFFAEAKSEIESVQQSTSLLPASNSENVLHISALPWLDFTSMSHARNFDFPDSCPKVSFGKVMEENGRKRMAVSIHGHHALMDGYHVSQFVERFQELLNEQ
>NZ_CP017769.1|WP_083387840.1|1504553_1505648_+|redoxin-domain-containing-protein
MNKLMMLIALFFSIGVMAQDKLHVTGKITGIDNKTKLSISGGEKEKEFYLKDGVIDVEVDLKEAPTSVFITVFYDKTIKYTSFFLGNEDVTIDASIDNFPNEVVAKNSKYDGLRYENYSLSKDLDKKRNDINEIIEKEIGEGAKPQVAYAKYKDELDAIRKENAGRQYEFLKKHINTDYGRHLIRFYVDQFTEEQFKTLYSLVDPINMDRSEIKFLKTLCDSKQLEVGDIYYDFTALDLKSKVVKFSDFFKEKYVLLDFSHVNCGYCYMAAPKTALIAEELKDKVMYVTYHTGDNLKEAQEYYKLKGKKGNIIWNKEGDLHPMMAMYRNMSTPSYLLFSPDGKFIKEVNGSKADLKSIILEEIE
>NZ_CP017769.1|WP_006262638.1|1502927_1504106_-|acyl-CoA-dehydrogenase
MRPDLFQAPDYYLLDDLLSDEHKLIRDTARAWVKKEVSPIIEDFAQRAEFPKQLIPGLAEIGGFGPYIPTEYGGAGLDQISYGLIMQEIERGDSGIRSTSSVQSSLVMYPIWKYGNEEQRMKYLPKLATGEYIGCFGLTEPDHGSNPGGMLTNFKDMGDHYLLNGAKMWISNAPFADIAVVWAKNEEGRIHGLIVERGMEGFTTPETHNKWSLRASATGELIFDNVKVPKANLLPNKSGLGAPLGCLDSARYGIAWGAIGAAMDCYDTALRYSKERIQFDKPIGATQLQQKKLAEMITEITKAQLLTWRLGVLRDEGRATSAQISMAKRNNVAMALDIARDARQMLGGMGITGEYSIMRHMMNLESVVTYEGTHDIHLLITGMDVTGFPAFK
>NZ_CP017769.1|WP_006266172.1|1502072_1502843_-|DUF3050-domain-containing-protein
MTIQEINAQIAEERNALLQHPLYNKIKTIPHLCTFMEGHVYAVWDFMSLLKALQQQLTCTTTPWFASEFPQTRYLINEIVLAEESDLAYDGQRLSHFEMYLDAMITAKADTTAIEALIRTLKSGTPIFEAIAQTDLDEGVKEFLNFTFKTIEGGKAHEIAAAFTFGREDLIPDMFTEILKGFQQNFPETDLTKLVYYFERHIELDGDEHGPMAMKMISELCGDDQQKWQDVIAISKQALIKRYNLWNSIEKFIKIK
>NZ_CP017769.1|WP_006257619.1|1501289_1502006_-|3-ketoacyl-ACP-reductase
MKLKGKNAIITGGGRGLGKATAIAFAQEGINVAITGRNEKTLQATVTELEALGVKATYAVFDVTDKAKVKAEIAKLIETLGGVDILVNNAGISEFGKFTDMSAERWEEILLTNVMGVYNVTREVLPHLIDQNEGDIFNVASTAGLNGNATTSAYSASKFAVIGMSESLMKEVRKNNIRVCTLTPSTIASDMSIELGLTDGNPDHILQPEDFAELIVATLRLPRRAMVKTASLWTTNPQ
>NZ_CP017769.1|WP_006262636.1|1500414_1501134_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MIRKITRFFLKLALLFFGLSIFSVLVFRFVPVPYTPLMFIRLYEQVKDGKPMTLQHKWVPLDDINVNLQKAVIASEDGHFLTHNGFDFKAIEKAMKNNEKGKKIKGGSTISQQTAKNVFLWPGRSYIRKGFEAYFTVLIEFLWPKERILEVYLNSIEMGDGVYGAQAAAKHWYNKDAKSLTANQAAGIAVILPSPRRYKANNSGPYIAKRKNTITRYVNNFGPLDFNKKGANKTENKKK
>NZ_CP017769.1|WP_006266170.1|1499862_1500339_-|hypothetical-protein
MKKVLLSFAVVGLLFATSCKDTKAEETTPAVENTEATTEESAAVSEFEKAKTEAETKLADAKKAVEEAVKKGDKKAQEEANKALEAAQKTWDDAKAKFEEVSKKAGDAVENAKDATEEKAEEVKEATEKKVEEVKEATEKKADEVKGAMKDAADKLKK
>NZ_CP017769.1|WP_006257622.1|1499211_1499685_-|DNA-starvation/stationary-phase-protection-protein
MKTNIGLTDNARQFNAEVLSKLLADEFILYTKARNAHYNVTGVDFHSKHVYFEELYTELAVNVDAVAERIKTLGHYAPSSLKDYLKLTHLTEERKTTDTDSKSWIAELLIDYEVIVSFIRQNIDAIEESNDKSTADFLIGLMEAHEKTAWMLRSHLG
>NZ_CP017769.1|WP_006266178.1|1508840_1509800_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MKVTEHIQKANGKTQFSFEILPPLKGQNIQGIFDSIEPLMEFDPPFIDVTYHREEYEYKEAGNGLWEKRTVRKRPGTVGICSAIQNRFKLDAIPHILCGGFTKEDTENFLIDLDFLGIDNVVALRGDAVKNETYFKPEPKGNKYASDLVTQISELNQGIYLDPELENTSKTDFCVGVAGYPEKHMEAPNFDTDLKYLKQKIDNGAEYIVTQMFFDNSKFFAFVDKCRSIGIDVPIIPGLKPLATLSQLNLLPQRFKVDLPDDLVAEVLKAKDNTAIREIGIEWCAQQSRELIEAGTPIVHYYSMGKSDNIKNIIKLATV
>NZ_CP017769.1|WP_071307138.1|1509796_1513528_-|methionine-synthase
MSTTLIHTDIRSLLKQRTLVLDGAMGTMLQAYRFSEEDFRGERFADFAHPLKGNNDLLSITQPDAVKEVHRQYLLAGADILSTNTFSGTTIAMADYHLEDIVYELNYQSAKIAREVADEVEALDPNKPRYVAGAIGPTNKTASLSPDVNNPEYRAITFEELRIAYKQQAEALLDGGCDLLLVETIFDTLNAKAALFAIDEIQAERGIDIPIMISGTITDASGRTLSGQTVEAFLISIAHIPLLSIGFNCALGAEQLEPYVKQLSQHAAVNISAHPNAGLPNAFGEYDQTPTEMKELIDSFLSQNLVQIIGGCCGTTPEHIKLIAQAVAEHSKDRQPKQFNLKPVLALSGLEPLYVTAEANFINIGERTNVTGSRKFLRLIKEEKFDEALAVAREQVEGGAQVIDINMDEGLLDGVHCMTNFLNLIASEPDIAKVPIMIDSSKWEIIEAGLRVVQGKAIVNSISLKEGEELFIEHAKLIKRYGAASVVMAFDEKGQADSLERRIEICQRSYDILVNQVNFAPQDIIFDPNIFPVATGMEEHNNNALDFFNATKWIRENLPYANVSGGVSNVSFSFRGNNKVREAMHAAFLYHAIQHGMNMGIVNPEMLEVYDEVDKDLMEHVEDVLLNRRDDATERLLDFAESIKNESAIQSTEIKVEEWRSGSIQDRLTHALVKGIETYVIEDTEEARLSVPQPIQVIEQYLMNGMNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPFIEESKKQNAEASVGNAGKILMATVRGDVHDIGKNIVAVVLACNNYEIIDLGVMVPPEKIIETAIKEQVDIIGLSGLITPSLDEMVHLAKELDKVNSNIPIMIGGATTSRVHTAVKIAPEYKNCVVHVHDASRSVTIANQLLQKEIEATFKDNIREEYDQLRRDYLGRARDKSYITIEQARANKVKIEWDAKDIVKPNFIGTKTVTVELDELLPFIDWAPFFRSWQLYGKFPQILTDEVVGQTATQVYDDALIMLDKIINERWFEARGVLGIFPANQVNDDDIEVYNEQGETLDKLLTLRQQSLKNIKAPNIALADFVAPKESGLEDYIGLFAVSTGFGVDEIAKEYEDDLDDYNAIMVKALADRLVEAFAEYLHHRVRKEIWGYASAERLSNEELIKEAYQGIRPAPGYPACPDHLEKGTIWKLLQVEERIGVSLTESYAMFPAAAVSGYYFAHPQSRYFGLGKIEQDQLEDYANRRNISIEEAERWLSPNLAQNNKLTTNES
>NZ_CP017769.1|WP_006257607.1|1513573_1514767_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNTRNNEEGCCFETQAIRTQTERSQYNEHSTPLYLTSSFVFDDAENMRAVFAEEIQQYSYSRFTNPNQTELVEKIRIFEKAEAGFAFATGMAAVYCSLFPLLKTGDHIVSCSNIFGSTRGLFSNTFPEWGVETSYFDLNQVYDVERLIKPNTKILFAESPTNPGVDVLDLAYLGEIAKKHNLIFIVDNTFATPYLQNPITLGAHIVVHSATKLIDGQGRACGGVTVGYKEYIHKIYLFARTIGASISPFNAWVLSKSLETLAIRVDRHCENALTIAEYLEKHPAVEFIKYPFLPSHPQYEIAKKQMKQGGNIIAFGIKGGLDAGRTFLDALQLCSRTANLGDSRTIVTHPASTTHSKVPAEEKIATGITDNLIRLSVGLENTKDIIRDLEQALTAAQ
>NZ_CP017769.1|WP_071307142.1|1518922_1520062_-|PLP-dependent-transferase
MSTQTDILKHIPIDPHTGAIAVPIYQTTTFAQEAPGVNKGFDYTRTNNPTRQALEELVASLENGAKGFAFGSGLAAIDAVFKTLSQGDEVIAVANIYGGTYRLLNEVYAKFGIKTHYVDTTVAANVEKAINDKTKLIWIESPTNPTLRISDIQVITSIAKQHKVWVCVDNTFATPIAQKPLDLGADIVVHSATKYIAGHSDVVAGLVITKTEEIGKVIKFHQNSTGAILSPFDSFLTIRGIETLLLRYKGYSENAIQIAEYLSTHPKIDKIYYPGLKSHEGHELAKKQQKYFGGVISFDLKENTREAALQVIQSLKLFTLTEGLGGIKSLSNYPFEMSHGSVPKETKIQAGITESLIRLSIGLEETEDLIEDIKQALAQ
>NZ_CP017769.1|WP_071307143.1|1520063_1521338_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MSNLNFSTQALHAGHNVQSTAGTRAVPIYQTSSYVFENADHAAGAFNLSIPAYIYTRLNNPTNDILEQRLAALEGGIGAVVTASGASAISTTFLTLLKAGDHIVSSNSLYGGTYNLFNVTLPRFGINTTFVDPSDVENFRINIQENTKAIFVESLGNPKLDIINLKAVAKIAQEFKIPFIVDNTVASPALLNPIEYGANIVVHSLTKYITGNGTSLGGAIIDAGTFDWSSGRFPEFTEPSPGYHGLIYHQALGNAAFIAKIRVEGLRDLGAALSPFNAFQIIQGLETLPIRIQKHSENALALAEWLEKQDAVAWVNYPGLKSSPYHDLAKEYLPKGQSGVVTFGLKKGFEAAKTVANETKLFSLLANIGDTKSLIIHPASTTHQQLSVAEQKATGVAPDLIRLSVGIENIEDLKADLANVFKTL
>NZ_CP017769.1|WP_006266183.1|1521813_1522521_-|methyltransferase
MFQFKQFTIQQDKCAMKVGTDGVLLGAWTPIDNNPYNVLDIGSGTGLLALMMAQRTGAEQIDGVEIDENAHEQAVENFENSPWGDRLFCYHADLETFANEMEEEYDLIISNPPFYSEDYHTNDKQRDTARFQDAMPFDLLIEAVEYFLSEKGVFSVIIPAKEEETLMRLAAEFGIYPFKVTRVRGNEQAEIKRSLIAFSRQLVEKIPLDELTIEVERHQYTPAFEALVRDFYLKL
>NZ_CP017769.1|WP_071307144.1|1522613_1523369_-|GLPGLI-family-protein
MKKYLFLLLIMTSSFAQNTSEVEVMRYSYKTSIANGSKKLVRDGNAILDIKDKESRFTDLMNYSFVTSQKTDNPEKGNQATFKWTVYADGTNTSFYDKIGLDLSYYEEDKNSIKWTILPEVKDWNNYKVQEATATYGGRAWTVLFIQDIPVQSGPYKFINLPGFVVKAWDSENHFVFELLDSQKVSTSWDIVTDDKYAKYSKDQTNKARKVAASKTYAQLLEEKGTVLDKVTAEYFNRKVGDSENPIERDF
>NZ_CP017769.1|WP_071307145.1|1523650_1524181_-|adenylate-kinase
MVALHDLGNRICIIGLSSSGKSTLAQALGKKLNLNILHLDQIAHIPNTDWTPRDKALMTADHQAFLTDHTDWVIEGNYSFLMPERFKEATCIIWLDFSPIGALYRYIKRSITHRDTRPGNLDGAKSQFSMKMVKYILFEAPKKSPKYVDLINNSSATFIHIRSFKELMKWYRMWGL
>NZ_CP017769.1|WP_006257597.1|1524245_1524776_-|16S-rRNA-processing-protein-RimM
MRKKDCFYLGKIAKKFSFKGEVLIYLDTDEPELYENLESVFVDFDGQLVPFFMEQASLHKSDFLRVKFEESNSEEDADRLVGSEIYLPLTMLPKLEGNKFYYHEITGFDVIDTNEGEIGQLKRVNDSNYQPLFEIDFNGTEILVPMIDELIHKVDRENKKLYLNVPVGLLDIYLGR
>NZ_CP017769.1|WP_006257596.1|1524788_1525316_-|30S-ribosomal-protein-S16
MSVKIRLQRHGKKGKPFYWVVAADARAKRDGKFLEKIGTYNPNTNPATVELDVDAAVKWLFNGAQPTDTARTLLSYKGAMLKHHLQGGVKKGALTQEQADAKFAAWLEEKAAKINAKKEGLSSSKAADKAARLAAEKEVNAKRAAAAQAKAAEAQAAPAEETAEATEESNEETQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP017769_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_2

1572451-1572556

Orphan

Consensus_repeat	Method
ATTATATGTTATTGCATATAAAATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_2

>merge|NZ_CP017769|2|1572451-1572556|CRISPRCasFinder
ATTATATGTTATTGCATATAAAATGATGTTTTAGAGGTATATTATATGTAATTGCATATAGTTTTGTATATTTGTGTATAATTATATGTTATTGCATATAATATGA

>NZ_CP017769|2|2|1572451-1572556|CRISPRCasFinder
ATTATATGTTATTGCATATAAAATGA	TGTTTTAGAGGTATATTATATGTAATTGCATATAGTTTTGTATATTTGTGTATA
ATTATATGTTATTGCATATAATATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_025125596.1\|1572793_1573129_+\|phosphatidylinositol-kinase	unknown	unknown	gnl\|CDD\|379317
NZ_CP017769.1\|WP_006257542.1\|1575367_1575673_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380355
NZ_CP017769.1\|WP_083387860.1\|1573238_1574069_+\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NZ_CP017769.1\|WP_006257546.1\|1572590_1572797_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NZ_CP017769.1\|WP_071307168.1\|1568992_1570072_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307165.1\|1563265_1563652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006257538.1\|1580079_1580970_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|119384
NZ_CP017769.1\|WP_016650085.1\|1565571_1566606_+\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|379118
NZ_CP017769.1\|WP_071307173.1\|1581528_1582614_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP017769.1\|WP_071307172.1\|1576989_1578378_-\|dipeptidase	unknown	unknown	gnl\|CDD\|349929
NZ_CP017769.1\|WP_006257549.1\|1570384_1571011_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307166.1\|1563848_1564286_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006257547.1\|1571770_1572352_-\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|153119
NZ_CP017769.1\|WP_006257539.1\|1579173_1580013_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|225803
NZ_CP017769.1\|WP_071307169.1\|1571253_1571721_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_051130911.1\|1566608_1566929_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307170.1\|1574072_1575323_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|379337
NZ_CP017769.1\|WP_155242159.1\|1565423_1565567_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307171.1\|1575799_1576723_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP017769.1\|WP_071307167.1\|1566972_1568547_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_025125596.1\|1572793_1573129_+\|phosphatidylinositol-kinase	gnl\|CDD\|379317	pfam13657, Couple_hipA, HipA N-terminal domain. This domain is found to the N-terminus of HipA-like proteins. It is also found in isolation in some proteins.	4.39669e-30
NZ_CP017769.1\|WP_006257542.1\|1575367_1575673_-\|cupin-domain-containing-protein	gnl\|CDD\|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.26405e-41
NZ_CP017769.1\|WP_006257538.1\|1580079_1580970_+\|glycoside-hydrolase	gnl\|CDD\|119384	cd06524, GH25_YegX-like, YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.	2.68753e-72
NZ_CP017769.1\|WP_006257546.1\|1572590_1572797_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	1.91745e-15
NZ_CP017769.1\|WP_071307172.1\|1576989_1578378_-\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NZ_CP017769.1\|WP_016650085.1\|1565571_1566606_+\|virulence-RhuM-family-protein	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	1.31926e-145
NZ_CP017769.1\|WP_083387860.1\|1573238_1574069_+\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	3.62465e-57
NZ_CP017769.1\|WP_006257547.1\|1571770_1572352_-\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|153119	cd07910, MiaE, MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	1.45587e-91
NZ_CP017769.1\|WP_071307170.1\|1574072_1575323_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|379337	pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.	6.79801e-18
NZ_CP017769.1\|WP_071307173.1\|1581528_1582614_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.35831e-95
NZ_CP017769.1\|WP_071307171.1\|1575799_1576723_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.8148e-25
NZ_CP017769.1\|WP_006257539.1\|1579173_1580013_+\|mechanosensitive-ion-channel	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.86019e-48

>NZ_CP017769.1|WP_006257547.1|1571770_1572352_-|tRNA-(ms[2]io[6]A)-hydroxylase
MLGLKLLTDPRWADIAESNLEEILTDHCWCEQKAATNAITLITYNSEHEDLVTAMTEIAIEEMQHFQMVHNIIKERGYTLGRERKDDYVGQLYKFSKKDGSRNECFIDKLLFAAMIEARSCERFRTLSQNIKDEELAKFYHELMVSEANHYTTFLKFAKKYTEKVDVDKRWKEWLEFEGELIQSYGNKEHIHG
>NZ_CP017769.1|WP_071307169.1|1571253_1571721_+|hypothetical-protein
MLSKLSIVLGVCLMTVVGWGQRSYSDYKPIFNVGYNQGTHSMIQLGVEYDVLSSNERWLFIGGGVLATPYHKEWHWLPYVDVTKSNGLLFYGAKASTKHVQPQVGISLLNLMDIGLGYGIPFNEDRIPVIKGFNLNIKIRLSGNDSVYPKLKMGF
>NZ_CP017769.1|WP_006257549.1|1570384_1571011_+|hypothetical-protein
MAEIKKGILGGVQGKVGTVVGVNWRGKNIIRSLPKKSGKPATEGQLKQRAKFKLVAEFLSPLNQLTGKYFGEYQGAKSRTNLAMSYQLLETVIEKDGDLAIDYAKVVITKGVLPVPIVSDVKIENAKLTVNWKSDVGIGLAKEKDDMVFVVYNQDANQFYVIENQANRKAGTISANIPAEWAKNNSVWLIIVDEAKKYSSTSAFLSVV
>NZ_CP017769.1|WP_071307168.1|1568992_1570072_+|hypothetical-protein
MKRILFLFLGLSLLASCSSDDNAVVDDEKLGELVVKIEQKNYYVGDKVSIKVESQKGEEVKGARIFINETQVNALYEFMKPGDFKVVAKNAGYTSSKAVDIKVKAYVNINLSVKESKVIVGNKIVFDVLNDSKETVAAKIYHVESGTEIEGTEYTPTEIGVYTFVARGGEGYKESNKVTVEVLADTSYFWIGGKNYEIHELTFDVSQYKYKSGVKDRVYLLNGKTMNAVEINVWNINGEAANNMSITVWIPNPTIKVNSKNQITDFGQRVSLSDSSEWIVRSVFLMLEGEDAQSYEVNANRLTDITLKTKGLVIPNNGVGAGKKGVESQGVFDFKAFGDKEMKLLFNGYFTTTEAVKKF
>NZ_CP017769.1|WP_071307167.1|1566972_1568547_-|hypothetical-protein
MKFIPLAEIKHLLPEDCWYKHENLDLPILYYEGHQQWEDPLNLDTISAQHYTDDLIPFILINGNLTVPQIFNANTEISTGLVVLGSLTTNNIAVGGQGIYVKRNLKVAEVFWGDYNHGELIVGGTIRARLFINTDYGVDDYRFSMKDRIEIDFLLNHDLERDVAEPTVLFHLIKPEFLYKREELDDTIYSWANWLRTDAILQSFAQNQSILLETPNPAYADEKYPFAFANKEVNLDNLMKLAGGSIFNQDHIPTGEEIVIDYAEEDMYKRISFTNGNSYTTSVYFQYQDLYAMLVTIEKKKSLLPFSKDYTLQTFYRYPTELDQTWQPMVNTSIAESLTIEWEKLLVEYSDMIGIYNKKQKIITVANFNDIMKRPVVQRLGQRYYEKEDSTIYYCGQQWRFRLEDRAAGHAPRITIQNYLGKGKNGENQYEYFHYELEQDPDPKGKPYIQLYYQREISPDADVFFLEVSTRRRMLKAINYFVYLQKYIERVWIKEEVILTDEEIKLREAKEKGNTYLKSILGHR
>NZ_CP017769.1|WP_051130911.1|1566608_1566929_+|hypothetical-protein
MFKKLYWYSDGRWYYDSNFKGSIHSNFIEGNAADIARCNKLTVFPKASGWWKNLKKKKRYDDSMRYSLIISIETPEVDVDIYTPVAVEVENKNMIDNLAVGNKILV
>NZ_CP017769.1|WP_016650085.1|1565571_1566606_+|virulence-RhuM-family-protein
MSEIVLYTTEDGQTKINVQLENETVWLTQKQLVELYQAAKSTVSEHIKNIYADEELLPEATVRKIRTVQIEGSREVSREIDYYNLEMIIALGYRINSKVATRFRQWATTRLREYIVKGFTMDDDRLKGLGGSNYWKELLDRIRDIRSSEKVMYRQVLDLYATAMDYDPNSKDSITFFKIVQNKLHYAAHGHTASEVIYMRVDSDKPYAGLTTFKGDEPIQAEALVAKNFLEEKELKVLNNLVAAYFDLAELNAIEEREMRMEDYIRELDNILSSTGRKILDNAGKISSATAKEKATAEYKKYKAKTLSGVETAYLKTISQLEQQAKKGDRLSKMKGTTKKGGQA
>NZ_CP017769.1|WP_155242159.1|1565423_1565567_+|hypothetical-protein
MKNNTVLEDEHIIDIFDKKENIDYVAITLDNEKISVFRNSITSVIKR
>NZ_CP017769.1|WP_071307166.1|1563848_1564286_+|hypothetical-protein
MKKKILLVSTVLALLTTADITAQVKKDNTPPNRDQTTKSYSKEATPVRSRISIEQLSRNLTKAFKEKFPTNAVDYDRSVIFDFMIEPDGTASYIEVVRSDFDKVMEVHLIQLIDKVTMNAWEPASLKGKKIPMQYTVKLYVMKGN
>NZ_CP017769.1|WP_071307165.1|1563265_1563652_-|hypothetical-protein
MNKLILLIATLFCTISYSQKVSDTPLSEITATYLEVTVSGTPLSSKHYANIDYGQKANNKQLKNDDGTPMIFNSVIDVMNYLDSKEYELIHINSNVVDGFTRTNYFFRKKKSSACTCTSSTPMMPALG
>NZ_CP017769.1|WP_006257546.1|1572590_1572797_+|helix-turn-helix-transcriptional-regulator
MSTSLGEFVKEHRKRVGLTQEQLADKAGVALTVIRKIEQGKDNLSLAKVNEVLIMFGHTLGPINTKEL
>NZ_CP017769.1|WP_025125596.1|1572793_1573129_+|phosphatidylinositol-kinase
MRRALVKYDSVNAGVLTETDQGEYVFEYLAEYIEKYGQQFITFQMPVRKQVYRSNRLFPFFDGLIPEGWLLNIATESWKIQSNDRMGLLLACCQNCIGAVSVHPIINEEDE
>NZ_CP017769.1|WP_083387860.1|1573238_1574069_+|HipA-domain-containing-protein
MSEIAQLAKNVVERSVTVPGVQPKLSMGVVEKNIGDGQSGRMTILDALEGLYILKPQNENYIQMPENEHLSMRLAELFDINVVPSSLISMASGELCYITKRVDRTTNSKKMHMIDFLQILELEDKYLGTMEQVGKEIGELSSYTALDKLRFFELAVFNFIIGNNDMHLKNFSMLCIDNVWGLSPAYDLLNVKIVLPKDKDDFALNLGGKKKNQNRAYFERFAEVLKLNKKQVNNVFSRIEEWNKKAVELINKSFLSEDLKKDYLLTIHTQIERLKQ
>NZ_CP017769.1|WP_071307170.1|1574072_1575323_+|glycosyltransferase-family-4-protein
MKHNLSGKKILVIGPVWPESKSSAAGKRMLQLLQCFKDWGMQIYFGSTAKKSEVSDDLSCYGVTEVELWLNDARTDEVLADLMPDVVMYDRFMIEEQFGWRVTEQCPDAMTILDTEDLHFLRFGRQEMQKKGGEDIEEYLYSERTKRELASILRCDLTLIISEYEYKLLVEKFHILPNALLFIPFMEEEVTSEDIGNWKRYEEREDFVFIGNFIHEPNWQTVLKLKTVIWPLLRKKLPQTRMHIYGAYPSPKVIQLHNEREKFLVHGRADDALEVISDARVMLAPIPFGAGIKGKFIDAMRVGTPSVSSSVGGEAMRGEYEWNGFITDDVEEFVDRAVELYTTESLWKEKQEYGVKLIKANYDSKYYGDLFYRTVNTMFSNLKETRRANFISEVLRHHSVQSSKFFGMWIQEKTSR
>NZ_CP017769.1|WP_006257542.1|1575367_1575673_-|cupin-domain-containing-protein
MNKINLAQESDSLKDFWQLKNLGNINDHTINLIKLQGEFEWHSHDHEDKLFMVVDGILELHFRDKVITLHPNECIIVPKGVENKPVGKEEVTLMLFEPNRM
>NZ_CP017769.1|WP_071307171.1|1575799_1576723_+|helix-turn-helix-transcriptional-regulator
MRVGLGFDDYRSGEGYVQLHRQLCTEDLDLHFYQSTQQTASKTYVYKEQPYIQLHYELDKGYTEYKARYQQKSSIYTEVGKCTLFYLPVLDGYLYDPVCDSAISCEIEIGENWLIHNLKEESKESYQFLKNMSLSEIAVLGDDSFTITTEMKQLIYEINKCPYTGMVKDLFIEGKVMLLLALQLNQVQSDVNQKHAQRIHAQDISRLYDLKTLLEQESHLKHTIEELAMRIGMNRTKLQAGFKQCFGMTIHEYVLEMRMNEAYRLLTSFSKGTYSIEEVARSVGYKNYAHFSMMFKKKFGVSPSSFI
>NZ_CP017769.1|WP_071307172.1|1576989_1578378_-|dipeptidase
MKDSKQFVQENKQRLLDELIELLKKPSISADSAYSQDVINTAEAVKESLEKAGCDIVELCETPGYPIVYGEKIIDPALPTVLVYGHYDVQPADPIELWTSPPFEPVIKTTDLHPEGAIFARGACDDKGQMYMHVKAFEYMIANDALPCNVKFMIEGEEEVGSVSLGWFVKRNQEKLKNDVILISDTGMISNEQPSITTGLRGLSYVEVEVTGPNRDLHSGLYGGAVANPINVLTKMIASLHDENNHITVPGFYDKVEELSREERDEMAKRPFSLEDYKQKLDIDDVYGEAGYTTNERNSIRPTLDVNGIWGGYTGEGAKTVIASKAFAKISMRLVPNQDWEEITELFKKHFESIAPAGVRVEVKPHHGGQGYVTPIDSIGYQAASKAYTDTFGVTPIPVRSGGSIPIVALFEEELGSKSVMMGFGLDTDAIHSPNEHFGVFNYLKGIETIPLFYKYYTEMMK
>NZ_CP017769.1|WP_006257539.1|1579173_1580013_+|mechanosensitive-ion-channel
MELKNLLATVLEFELYTSKSISITIGTLLFIAFTLMITNVGVRLLKKAFIRMATPDVAARLGSVFNFINYFIYLIMIFFILNVVGINISMFLTTSAALFVGLGFALQDIFRDLIAGIYILFDKTLNVGDVVEIRGEVARVKVINLRCTIAETRNRKDIVIPNRKLIDDIMNNWTHEDPVIRARINVGAFIGTDVELVKSVLLSCVEDNDEVLKTPKPIVFIDEFGESSIRFILYYFIDNAFDNDRIGSEIRFEIDKKFKANNIELPVPVLKLKQGAESV
>NZ_CP017769.1|WP_006257538.1|1580079_1580970_+|glycoside-hydrolase
MASNKTNSNPMSAVGARPKRKPPTKRKPSRKKSTKSSTWTTVKWVVIIVVLVGIGIWFGLHFREGIRYFFSSDDKSEGKSIYDVRTVEVLNRHDSMLVGFDVSHYQGVIDWKVVDSVAGKASLDFVFIRATMGKDGKDKAFHLNWKGARANHFIRGAYHYYRPDENSTEQAENFIKLVKISEGDFPPVLDIEDMPKEQSMENLRKGLQNWIKLVEAHYKVKPILYSGENYYTHHLKEWFPDHVLWIANYNFFVEEIKPDWHFWQFTEKGVINGIDGKVDLNIYNGNKADIRELLVP
>NZ_CP017769.1|WP_071307173.1|1581528_1582614_-|ABC-transporter-permease
MSHTSKSYTQIALQKFKQDFWGVLCFWIIVSIAIVAAFAYFIIPDNSKNANAGDLALRSQSPGFTVSTITILTDTNRTWSELWFGREEATRFIPISEYHITNDTLFYKGYSNQPQLEETKSIALSSLNNAKESEIIKQKKYWLGTDNQGRDYLSRLVIGARVSLSIGFVAVLISLVIGITLGAIAGYFGGKIDAFILWLINVFWSIPTLLLVIAITLALGKGFWQVFIAVGLTMWVEVARVVRGQVISVKEQQYVTAAHALGYSNYRIITKHILPNCMAPVIVISAANFASAILVESGLSFLGLGTQVPTPSWGAMIKENYNYILLGKPYLALLPGFAMFVLVISFMLIGNALRDALDVRK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP017769_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_3

1666939-1667028

Orphan

Consensus_repeat	Method
TTTTTATTTGATGGTTATTTGATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_3

>merge|NZ_CP017769|3|1666939-1667028|CRISPRCasFinder
TTTTTATTTGATGGTTATTTGATACAAACCTAGTTTTAAAAGTTAAACTACTTAAAATCAGTTGTTTTTTTATTTGATGGTTATTTGATA

>NZ_CP017769|3|3|1666939-1667028|CRISPRCasFinder
TTTTTATTTGATGGTTATTTGATA	CAAACCTAGTTTTAAAAGTTAAACTACTTAAAATCAGTTGTT
TTTTTATTTGATGGTTATTTGATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006257444.1\|1673694_1674096_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|319912
NZ_CP017769.1\|WP_006262741.1\|1661474_1661792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_016650128.1\|1662781_1663597_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP017769.1\|WP_036496800.1\|1663825_1665052_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP017769.1\|WP_039328803.1\|1667776_1668289_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_039328812.1\|1672439_1673264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_039328800.1\|1665247_1666363_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP017769.1\|WP_006257441.1\|1674166_1674559_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_CP017769.1\|WP_006262739.1\|1657584_1658460_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131350
NZ_CP017769.1\|WP_039328801.1\|1667121_1667592_-\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|163702
NZ_CP017769.1\|WP_039328804.1\|1668291_1669218_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP017769.1\|WP_006262743.1\|1662313_1662607_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP017769.1\|WP_006260545.1\|1670720_1671962_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273716
NZ_CP017769.1\|WP_006257458.1\|1659159_1659888_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006257459.1\|1658648_1659023_-\|DUF983-domain-containing-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_039328805.1\|1669617_1670526_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379044
NZ_CP017769.1\|WP_016650126.1\|1660217_1660808_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376516
NZ_CP017769.1\|WP_006262742.1\|1661818_1662277_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006257449.1\|1669219_1669519_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184361
NZ_CP017769.1\|WP_006260546.1\|1672060_1672348_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006257441.1\|1674166_1674559_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	3.51365e-31
NZ_CP017769.1\|WP_039328805.1\|1669617_1670526_-\|hypothetical-protein	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	2.26785e-15
NZ_CP017769.1\|WP_016650128.1\|1662781_1663597_+\|hypothetical-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	8.78325e-05
NZ_CP017769.1\|WP_036496800.1\|1663825_1665052_+\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.77224e-33
NZ_CP017769.1\|WP_039328800.1\|1665247_1666363_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.00594e-35
NZ_CP017769.1\|WP_006262739.1\|1657584_1658460_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131350	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.	1.23322e-26
NZ_CP017769.1\|WP_039328801.1\|1667121_1667592_-\|JAB-domain-containing-protein	gnl\|CDD\|163702	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.	1.21465e-46
NZ_CP017769.1\|WP_039328804.1\|1668291_1669218_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	5.14244e-13
NZ_CP017769.1\|WP_006262743.1\|1662313_1662607_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	2.13279e-09
NZ_CP017769.1\|WP_006260545.1\|1670720_1671962_-\|hypothetical-protein	gnl\|CDD\|273716	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	0.00192142
NZ_CP017769.1\|WP_016650126.1\|1660217_1660808_+\|hypothetical-protein	gnl\|CDD\|376516	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561. This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.	3.91639e-08
NZ_CP017769.1\|WP_006257444.1\|1673694_1674096_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	4.01437e-55
NZ_CP017769.1\|WP_006257449.1\|1669219_1669519_-\|hypothetical-protein	gnl\|CDD\|184361	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ.	0.000125586
NZ_CP017769.1\|WP_006260546.1\|1672060_1672348_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.84193e-06

>NZ_CP017769.1|WP_039328800.1|1665247_1666363_+|Fic-family-protein
MDYNLEKAVDYHYGVFPPKSIDYTLFIQELVRATDALARFDQMLKNLHNTEILLAPLRNQEAVISSRIEGTISTMDEILQYEADHEGEDITTAKTDVIETILYQRALKNAQSALESGYDFSLSFLKQMHQQLLYLGRGANKSPGEFKKEQNYLADRLKREIQFIPIRPENLVDGLEQLFKFLENSDFPPLIKTAIMHLEFEALHPFKDGNGRIGRMLITLNLWREKILSEPHFYISGYFEENKDEYIEQMRNVSKTKDWNEWILFFLKAVENQAIKNLEIAESIKSLYETTKTEFSELLSSKWNIEILDFIFTYPVFRNNKFVSTTKIPNATAVLMIKKLVDNGYLVLREESSGRRAAMYSFEPLMKLVRV
>NZ_CP017769.1|WP_036496800.1|1663825_1665052_+|site-specific-integrase
MKTSLKIVLKKTKLSDGTYPINLRVTINRRSKFYKTPYSTAPKFWNAKVGEFTSKFPNFLQANRILSTLKQDASKVLDLMIEQEKEFTLEVFDSLLRPEKVEIVKFVAFFQNRIEQFKEAGQVSSASSYNDSLKALKRFKPGVIKYEFSQIDYSFLVAFEADLRSRGCTNGGIGIYMRNIRAIYNSAIKSKIASLENYPFRDYVISKLKSTKIKKALTKEELQLLLDYDFSENTEGAKVLYTYLFSFFCRGMNFTDIAELKWDDINSNRFSYIRNKTGVAINVKIPENKDLDTILNYFRIYRPFDTDYIFSILDKDLSLYTKEELRARKSSVRDYYNKQLNIIAKECGIKTKITFYTARHTFATLSLKKGVNLYMLKQAFGHQSIKTTEAYVEDFNREELDQAFENLF
>NZ_CP017769.1|WP_016650128.1|1662781_1663597_+|hypothetical-protein
MRNIIWIISVLCLSCMGYAQKNTTTEVIIPEVSKSNTVPNNPQQDPNYVYVAVQVRASPVRGMGSFEYEFTNRFMISQEAIEGLDRQRAFQCILQFVVEADGSFSDIMVVRDPGYGLGAEAARTMSTVNRWKPAIQNNNKVRSRFTLPIIMRKTEVPMRWRELADESGYGYISHAMAECGTDSFKQLFREAFMKTKYYVAGREYALRLDISIDESGELSNIILTNLVEEIELSTQELTKMVQSLATWLPTRVNGTPVKHDIYMLIGIDIKK
>NZ_CP017769.1|WP_006262743.1|1662313_1662607_+|helix-turn-helix-transcriptional-regulator
MKTFPLDQIIDEHIGKKGTKERDLFEVRVEIGRLGMKVSELRKAKGLTKKELARLAGVSKAQVKRIESDTVDVKIGTLLKVINELGLKMSFSIDSRN
>NZ_CP017769.1|WP_006262742.1|1661818_1662277_+|hypothetical-protein
MIISFDLDDTMISNMRFPLEVEPIWAKILGVERVRLGTIALFKELRNNGHKIYVYTTSYRSAFKIRLMFWCYGISIDYIINQQLHEKILGSKSKSVSKLPSEFEIDIHVDDSPGVQREGEKYGFNTIIVDIDDVEWGDTVLGKVAVLAELKK
>NZ_CP017769.1|WP_006262741.1|1661474_1661792_+|hypothetical-protein
MDSAEVWSFKRQQGDKIDVYEFTIVKEVLISPAIQSIQPLTIKEFDEFILKDYNDNFRDPMFLNIGRMHAENMVFKKLYLKVVSSGVVKYYEVTFSHSTAIMCYG
>NZ_CP017769.1|WP_016650126.1|1660217_1660808_+|hypothetical-protein
MRMRGECYSLAFRVLHWSIAFVMLGMLITILLRYTWLNKEGMSEIIMEYSTSQEVNMTKEKAIVLAKRLRAPMWEWHVYLGYTLMGLVFVRIILGMMGRVPFLDPFKRGITLNTRIRAVIYLVFYVCVVISVVSGVVLALDIETAYNNEIKSIHFGSIYYFVTYLVIHFIGVLFAELSSENGIVSRMINGKSKYDL
>NZ_CP017769.1|WP_006257458.1|1659159_1659888_-|hypothetical-protein
MKKILLLFVILMSISTSYGQRKSKKQEEPVKKIEYLDIVQILSNKDELKLTQKQVGALTIKNEYIKRDLQNLNSKTKMQEVEKNMHQRQLFAGYDNFVNRTLNEDQLESWNVIKKEIAASEEESTDLKTEMAALDSAYKAELKEVYRKYSKDRKLYYASRNVVRKQYDADKLRIYKKYNQAVEEEGEEGDKVLTLEEIANLYKEYDDYYNEPTQANPLEYLDVKEEYSNETEEITSEEEGEY
>NZ_CP017769.1|WP_006257459.1|1658648_1659023_-|DUF983-domain-containing-protein
MSYISKVISGKCPNCGKEHIFHDKGNPITFKMPKMTKECGSCGYNFHRETGFYFGAMYMSYALTVAEMVTVMVLRLIINHLFDLNITMLHAFIAIVFVIFILWTFNYRLSRIMWLNLFYKKDEQ
>NZ_CP017769.1|WP_006262739.1|1657584_1658460_+|helix-turn-helix-domain-containing-protein
MKDITILQMRDLTEEVKGADFYANTIPQHLITNHDHVEKPHRHDFYVCMIFTKGSGTHEIDFQSYEIQPGMVFMLAPGQTHSWILSEDIDGYIFFHTQEYFDLFFVRETIREYPVFRSAYYPNGFLLNEESSVLVENLMKRMTDEVSQPNWKKNFSLVNLASLFYIECNRQLLEGNSFSAVPNLQYNQHLHHFENLLEKNFRTEKSAAVYAEWMNMTQKHLNRVCKTLLDKTTTDIIIDRIVLEAKRMLIYTGKSFSEIAMMLGYDDYSYFSKVFKKRTGISPKEFLKKYV
>NZ_CP017769.1|WP_039328801.1|1667121_1667592_-|JAB-domain-containing-protein
METTVLNKDWLIASEVELIYKSKVKASKRPQITSSYSAYQIALKAWDGNKIELLEQFKVLMLSNNNKVLGVLEASTGGITATIVDLRIIFSALLKANATAFIIIHNHPSGKLDPSDADRQITRKIKEASKILDITLLDHLIITEESYYSFADEGTL
>NZ_CP017769.1|WP_039328803.1|1667776_1668289_-|hypothetical-protein
MAKKQPTLTELTELLFQQVVHLQEKLKQNITLQTQLSNRINNIEVKVNVSELHKIESNNRQRLQDDFTAFQSTLYDTKEDLLKIYRAISHKKMFYIIALNIFLLLTSGLSIYVAIKKSIHYSDYNQLIENNKKSNLELMYLNQFFKENPKNFEVYKKWKISSENNTKKPL
>NZ_CP017769.1|WP_039328804.1|1668291_1669218_-|relaxase/mobilization-nuclease-domain-containing-protein
MIAKAKTCIGGAALFNYVINPNKGYELARNNLSGETPKDMYQTMQILQNQNTRCKNNTISVVISPTIEDSRKMTDQDLENLVKDFLVGLKLNPKDAQYIAYLHTEKEHKHIHILINRIDENGKALKDNYIGFQAQSIAHEIALKYNWTSIRQENINRKELLKTNQKQTAEIIKKAHYFVLKERPKNLDQYINMMLAHQIEVKPTVNKQGNIQGYRFIHLPTNTNLKASEVDRNLKLNELFENNIPKPNNDLFHTVLYKDQDKQICFENWNTNTVSLFSFLNAYGNYYEDYMPDITKKKKRKQTQTLNL
>NZ_CP017769.1|WP_006257449.1|1669219_1669519_-|hypothetical-protein
MKREHKIEFRVTLTESLLIKNKAKKIGCSVSEYLRSTALGYSVSYKLTQDEIETYKLLNKFADNFRRIGNLFKLGDTTKVKESTIETANLIRAHLEKLK
>NZ_CP017769.1|WP_039328805.1|1669617_1670526_-|hypothetical-protein
MNTQEAKNISIISILDSLGIKPTKINDKQAWYHSPFRAENTPSFSVSVTKNVFYDFGDSTYKGNVIDFVMLYYKCDIKEALKILANNSFSVHQQLFNPQVNQDEKDYEITAIKPLRNKYLIYYIKQRGLCIKTTQRYCKEIHYILKDKAYYAIGFQNELDGVELRNKYVQMCFGSKYPTYINNDSSTVFLFEAFIDFLSFITLKPNLEHRFDYIILNSVNTLESTLIQSSNKFLYKTLDDSETFESKYKTIVACFDNDTAGDKATEKLIAAFPLITKDARAKYKDYKDVNDYLLSINRDKLT
>NZ_CP017769.1|WP_006260545.1|1670720_1671962_-|hypothetical-protein
MNTTATEYIRIGTEYYAIRKKNVNGKEIIVERKLWRKSEIITDFGKDIIKELPKFFGYKCEPNHIHYTHFIGDYFNSYSPILYNIDTTSELSLNSLKEQIPITYYFLQHIFGNQYLLAIDYFKILLFYPEQILPIIVLVSRNRETGKTTFLNWIKEIFDKNAVFVKANAFTEKFNSEMDSKLLLLIEEVKSENKDIVEAIKYISTAMYQSIEYKGQEKVEQKSFLKIIMTSNHEHNFLKIDKEETRFWVIKVPPIRKRSTEFFTKLIQEIPIFLNYLYRVPFTTEKKTRMWFTPETLHTEALHKLKHDVDLQNKNLVLDILDIIFNEFDMDQIDTTPSDINALLNYYNRGHNITMREIQTILENIALVRSTNSNNYERVKIEDSTLKRTIHKGKYYRISKETLLNQMTDEINN
>NZ_CP017769.1|WP_006260546.1|1672060_1672348_-|helix-turn-helix-domain-containing-protein
MTTLKIIQELNEIKLMITKGNQFQKEIFTIKDLMAYTGFSDSTIHKLTSKNLIPHHKPTNGTLFFDRLEIVEWIKQYRVFTDQEVLSQFSKQLKK
>NZ_CP017769.1|WP_039328812.1|1672439_1673264_-|hypothetical-protein
MNTIIETPFFFFHQKLEKLKSVTLSKKFTYIIAALLPIISLVTSTFQLPYFYSISKWYILLPLTALICSILLLSAAINFHKGQNIFLISHLSLIYKESFKSFKNSKEYLLISPSKKTITINITTPSKKKQEQKKDNVFVFSTAHQAIIKETLYELKKEVINDDTTMEDFKRVIESCISKKTDNPDSSIKLELQSQHCAMFLEAFFIPFVHLFTLHKTTLKESCRYFKYATVEDYSAINYDSINKKGRKLITNAHKETYAKILENVKSQLSKKLS
>NZ_CP017769.1|WP_006257444.1|1673694_1674096_-|methylmalonyl-CoA-epimerase
MRKIEHIGIAVKDLEASNALFEKLFGAPAYKEEAVESEGVKTSFFMNGPNKIELLEATNPDSPIAKFLEKKGEGIHHIAFDVEDIEAEMKRLAAEGFTLLNEIPKKGADNKLVAFLHPKTTNGVLIELCQEIK
>NZ_CP017769.1|WP_006257441.1|1674166_1674559_+|30S-ribosome-binding-factor-RbfA
METNRQKKMGALLQKDIVDILQGEVRKNGITNLVISVSKVNITSDLSVARVYLSIFPIDKGEELLKGIKSNAPLIKHELAQRVKHQMRKVPDLLFYVDDSLEYIDQIDKALTGDENPIANPDLLEKRKKK

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Crispr_ID: NZ_CP017769_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_4

1673450-1673597

Orphan

Consensus_repeat	Method
GTGGTCCCACCTGGGCTCGAACCAGGGACTTACTGATTATGAGTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_4

>merge|NZ_CP017769|4|1673450-1673597|CRISPRCasFinder
GTGGTCCCACCTGGGCTCGAACCAGGGACTTACTGATTATGAGTCAGTTACTCTAACCAGCTGAGTTATAGGACCGCTCATTTTGAGCGAAAAATTTCGTGGTGGTCCCACCTGGGCTCGAACCAGGGACTTGCTGATTATGAGTCAG

>NZ_CP017769|4|4|1673450-1673597|CRISPRCasFinder
GTGGTCCCACCTGGGCTCGAACCAGGGACTTACTGATTATGAGTCAG	TTACTCTAACCAGCTGAGTTATAGGACCGCTCATTTTGAGCGAAAAATTTCGTG
GTGGTCCCACCTGGGCTCGAACCAGGGACTTGCTGATTATGAGTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006257441.1\|1674166_1674559_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_CP017769.1\|WP_039328805.1\|1669617_1670526_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379044
NZ_CP017769.1\|WP_006257436.1\|1681558_1682620_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_036496800.1\|1663825_1665052_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP017769.1\|WP_039328803.1\|1667776_1668289_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_039328800.1\|1665247_1666363_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP017769.1\|WP_058699249.1\|1684313_1685312_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NZ_CP017769.1\|WP_006257444.1\|1673694_1674096_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|319912
NZ_CP017769.1\|WP_039328801.1\|1667121_1667592_-\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|163702
NZ_CP017769.1\|WP_039328804.1\|1668291_1669218_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP017769.1\|WP_058699246.1\|1676188_1678699_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP017769.1\|WP_058699247.1\|1678698_1680477_+\|HSP90-family-protein	unknown	unknown	gnl\|CDD\|237603
NZ_CP017769.1\|WP_006260546.1\|1672060_1672348_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP017769.1\|WP_058700020.1\|1682721_1683912_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_039328812.1\|1672439_1673264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_058699250.1\|1685411_1687781_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NZ_CP017769.1\|WP_006257440.1\|1674560_1675766_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP017769.1\|WP_058699248.1\|1680479_1681556_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006257449.1\|1669219_1669519_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184361
NZ_CP017769.1\|WP_006260545.1\|1670720_1671962_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273716

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006257441.1\|1674166_1674559_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	3.51365e-31
NZ_CP017769.1\|WP_039328805.1\|1669617_1670526_-\|hypothetical-protein	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	2.26785e-15
NZ_CP017769.1\|WP_036496800.1\|1663825_1665052_+\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.77224e-33
NZ_CP017769.1\|WP_039328800.1\|1665247_1666363_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.00594e-35
NZ_CP017769.1\|WP_058699249.1\|1684313_1685312_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
NZ_CP017769.1\|WP_006257444.1\|1673694_1674096_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	4.01437e-55
NZ_CP017769.1\|WP_039328801.1\|1667121_1667592_-\|JAB-domain-containing-protein	gnl\|CDD\|163702	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.	1.21465e-46
NZ_CP017769.1\|WP_039328804.1\|1668291_1669218_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	5.14244e-13
NZ_CP017769.1\|WP_058699246.1\|1676188_1678699_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.6814e-28
NZ_CP017769.1\|WP_058699247.1\|1678698_1680477_+\|HSP90-family-protein	gnl\|CDD\|237603	PRK14083, PRK14083, HSP90 family protein; Provisional.	0
NZ_CP017769.1\|WP_006260546.1\|1672060_1672348_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.84193e-06
NZ_CP017769.1\|WP_058699250.1\|1685411_1687781_-\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	1.05147e-77
NZ_CP017769.1\|WP_006257440.1\|1674560_1675766_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.29143e-38
NZ_CP017769.1\|WP_006257449.1\|1669219_1669519_-\|hypothetical-protein	gnl\|CDD\|184361	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ.	0.000125586
NZ_CP017769.1\|WP_006260545.1\|1670720_1671962_-\|hypothetical-protein	gnl\|CDD\|273716	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	0.00192142

>NZ_CP017769.1|WP_039328812.1|1672439_1673264_-|hypothetical-protein
MNTIIETPFFFFHQKLEKLKSVTLSKKFTYIIAALLPIISLVTSTFQLPYFYSISKWYILLPLTALICSILLLSAAINFHKGQNIFLISHLSLIYKESFKSFKNSKEYLLISPSKKTITINITTPSKKKQEQKKDNVFVFSTAHQAIIKETLYELKKEVINDDTTMEDFKRVIESCISKKTDNPDSSIKLELQSQHCAMFLEAFFIPFVHLFTLHKTTLKESCRYFKYATVEDYSAINYDSINKKGRKLITNAHKETYAKILENVKSQLSKKLS
>NZ_CP017769.1|WP_006260546.1|1672060_1672348_-|helix-turn-helix-domain-containing-protein
MTTLKIIQELNEIKLMITKGNQFQKEIFTIKDLMAYTGFSDSTIHKLTSKNLIPHHKPTNGTLFFDRLEIVEWIKQYRVFTDQEVLSQFSKQLKK
>NZ_CP017769.1|WP_006260545.1|1670720_1671962_-|hypothetical-protein
MNTTATEYIRIGTEYYAIRKKNVNGKEIIVERKLWRKSEIITDFGKDIIKELPKFFGYKCEPNHIHYTHFIGDYFNSYSPILYNIDTTSELSLNSLKEQIPITYYFLQHIFGNQYLLAIDYFKILLFYPEQILPIIVLVSRNRETGKTTFLNWIKEIFDKNAVFVKANAFTEKFNSEMDSKLLLLIEEVKSENKDIVEAIKYISTAMYQSIEYKGQEKVEQKSFLKIIMTSNHEHNFLKIDKEETRFWVIKVPPIRKRSTEFFTKLIQEIPIFLNYLYRVPFTTEKKTRMWFTPETLHTEALHKLKHDVDLQNKNLVLDILDIIFNEFDMDQIDTTPSDINALLNYYNRGHNITMREIQTILENIALVRSTNSNNYERVKIEDSTLKRTIHKGKYYRISKETLLNQMTDEINN
>NZ_CP017769.1|WP_039328805.1|1669617_1670526_-|hypothetical-protein
MNTQEAKNISIISILDSLGIKPTKINDKQAWYHSPFRAENTPSFSVSVTKNVFYDFGDSTYKGNVIDFVMLYYKCDIKEALKILANNSFSVHQQLFNPQVNQDEKDYEITAIKPLRNKYLIYYIKQRGLCIKTTQRYCKEIHYILKDKAYYAIGFQNELDGVELRNKYVQMCFGSKYPTYINNDSSTVFLFEAFIDFLSFITLKPNLEHRFDYIILNSVNTLESTLIQSSNKFLYKTLDDSETFESKYKTIVACFDNDTAGDKATEKLIAAFPLITKDARAKYKDYKDVNDYLLSINRDKLT
>NZ_CP017769.1|WP_006257449.1|1669219_1669519_-|hypothetical-protein
MKREHKIEFRVTLTESLLIKNKAKKIGCSVSEYLRSTALGYSVSYKLTQDEIETYKLLNKFADNFRRIGNLFKLGDTTKVKESTIETANLIRAHLEKLK
>NZ_CP017769.1|WP_039328804.1|1668291_1669218_-|relaxase/mobilization-nuclease-domain-containing-protein
MIAKAKTCIGGAALFNYVINPNKGYELARNNLSGETPKDMYQTMQILQNQNTRCKNNTISVVISPTIEDSRKMTDQDLENLVKDFLVGLKLNPKDAQYIAYLHTEKEHKHIHILINRIDENGKALKDNYIGFQAQSIAHEIALKYNWTSIRQENINRKELLKTNQKQTAEIIKKAHYFVLKERPKNLDQYINMMLAHQIEVKPTVNKQGNIQGYRFIHLPTNTNLKASEVDRNLKLNELFENNIPKPNNDLFHTVLYKDQDKQICFENWNTNTVSLFSFLNAYGNYYEDYMPDITKKKKRKQTQTLNL
>NZ_CP017769.1|WP_039328803.1|1667776_1668289_-|hypothetical-protein
MAKKQPTLTELTELLFQQVVHLQEKLKQNITLQTQLSNRINNIEVKVNVSELHKIESNNRQRLQDDFTAFQSTLYDTKEDLLKIYRAISHKKMFYIIALNIFLLLTSGLSIYVAIKKSIHYSDYNQLIENNKKSNLELMYLNQFFKENPKNFEVYKKWKISSENNTKKPL
>NZ_CP017769.1|WP_039328801.1|1667121_1667592_-|JAB-domain-containing-protein
METTVLNKDWLIASEVELIYKSKVKASKRPQITSSYSAYQIALKAWDGNKIELLEQFKVLMLSNNNKVLGVLEASTGGITATIVDLRIIFSALLKANATAFIIIHNHPSGKLDPSDADRQITRKIKEASKILDITLLDHLIITEESYYSFADEGTL
>NZ_CP017769.1|WP_039328800.1|1665247_1666363_+|Fic-family-protein
MDYNLEKAVDYHYGVFPPKSIDYTLFIQELVRATDALARFDQMLKNLHNTEILLAPLRNQEAVISSRIEGTISTMDEILQYEADHEGEDITTAKTDVIETILYQRALKNAQSALESGYDFSLSFLKQMHQQLLYLGRGANKSPGEFKKEQNYLADRLKREIQFIPIRPENLVDGLEQLFKFLENSDFPPLIKTAIMHLEFEALHPFKDGNGRIGRMLITLNLWREKILSEPHFYISGYFEENKDEYIEQMRNVSKTKDWNEWILFFLKAVENQAIKNLEIAESIKSLYETTKTEFSELLSSKWNIEILDFIFTYPVFRNNKFVSTTKIPNATAVLMIKKLVDNGYLVLREESSGRRAAMYSFEPLMKLVRV
>NZ_CP017769.1|WP_036496800.1|1663825_1665052_+|site-specific-integrase
MKTSLKIVLKKTKLSDGTYPINLRVTINRRSKFYKTPYSTAPKFWNAKVGEFTSKFPNFLQANRILSTLKQDASKVLDLMIEQEKEFTLEVFDSLLRPEKVEIVKFVAFFQNRIEQFKEAGQVSSASSYNDSLKALKRFKPGVIKYEFSQIDYSFLVAFEADLRSRGCTNGGIGIYMRNIRAIYNSAIKSKIASLENYPFRDYVISKLKSTKIKKALTKEELQLLLDYDFSENTEGAKVLYTYLFSFFCRGMNFTDIAELKWDDINSNRFSYIRNKTGVAINVKIPENKDLDTILNYFRIYRPFDTDYIFSILDKDLSLYTKEELRARKSSVRDYYNKQLNIIAKECGIKTKITFYTARHTFATLSLKKGVNLYMLKQAFGHQSIKTTEAYVEDFNREELDQAFENLF
>NZ_CP017769.1|WP_006257444.1|1673694_1674096_-|methylmalonyl-CoA-epimerase
MRKIEHIGIAVKDLEASNALFEKLFGAPAYKEEAVESEGVKTSFFMNGPNKIELLEATNPDSPIAKFLEKKGEGIHHIAFDVEDIEAEMKRLAAEGFTLLNEIPKKGADNKLVAFLHPKTTNGVLIELCQEIK
>NZ_CP017769.1|WP_006257441.1|1674166_1674559_+|30S-ribosome-binding-factor-RbfA
METNRQKKMGALLQKDIVDILQGEVRKNGITNLVISVSKVNITSDLSVARVYLSIFPIDKGEELLKGIKSNAPLIKHELAQRVKHQMRKVPDLLFYVDDSLEYIDQIDKALTGDENPIANPDLLEKRKKK
>NZ_CP017769.1|WP_006257440.1|1674560_1675766_+|ABC-transporter-permease
MKFSLYIAKRYAFSKSKSKAINVITTISSVGIVVSAMAMFIVLSVFSGLKAYSLSFVDDLDPDLKVFTPKGKSFVVEDRQILDLEESGYFKGVAKVVEDRLLFSFKDKQAVSMIKGIDSDFVNVTDFDEKVEYGSWLEPDTDDAVVGVGMSHLLSMGLFDTENAFEALALKPGKGTIENPEDAFIKRHLNPTGVYVLGNDDLDNKYVFVDIDNARALLNIPTTEVTNLELAIAEGVSEGKAIQKIKEVLGEEYIVKNKTQLNDGLYRMLNMENLVVYLIFVLVVIMALFTLVGSMIMIILEKQPNIKTLNQIGVPVSDLRKIFLFQGLIICVLGSVIGLVLGGIVVSLQVAFGFISIREGLAYPVAFNWVNIFVVLVSIIVLGLLASLVSSSRVNNSYLKL
>NZ_CP017769.1|WP_058699246.1|1676188_1678699_+|sel1-repeat-family-protein
MEYLNYVREFANDSVSITAHAEEFLNKNDYSNPHEWYKAHAICMLAEQIGKNNEVLEKLYDQLNEDSNCLHSSMSLSDEDYADWFTDVKALNDIFIDRGYKHAYAYQYELFINSRYGFRDEERAVGYLKKGVELGDDLCKCYVGYAMYYGTQGYEKDEEGAVTILKMAVDGERANIANLFLLNIEFRGCTSGEEGKAVVEKFSELINVKKRGLYILADYYLREDDNVSAEAALKDGIANNSAYCKYLLGMMACNGRFEELGYTEEQGRELLADAYDYGITHAGYVLGYSYFYPRTEGLEAKQEAGIEMFKKAIAYYSSEATLELAIIYLYNEDFKDIAKGMEFLDRGVEYKYDRAMSEKGFVLLDFEEVERDVEGGKAMLEQAMAAGNDYAPYRLGLAYQNADFEEEADYEKALYLFELAAERNNLSGLELAGRYHRFGYAGEPNLEKAVSYYQRGIEYFNSNYCKVELAMLLERGEGIEQDVAEAARLYEDALNEGYTYAAIRLGFIYEEGSVGEPDYAKARAHFELAAEQDMAEGVYHLARCYRYGTGGEENQEKSFELFSKALELGFVDANVDIALFYEEGINGGEPDYEKAFEYMIVGAEAGFNYAQYKVGVYYSYGYLAETNVELGKEWFEKSVESGSPLGMLSLGDYYLYGYGEEKEYDKAFEYYIAAEERNYISEGLGICYQFGLGVEVDEVKAFHYYKLAADRQYDSAIFRLGLCYFYGNGTERDLVEAFHYLKQVADRGNMDAASYVGLMLVKGDGAEKDPEYGVSYLIQAAEAGFDMAQYELANCYLKGEGVPQSDDSAMEWYQQAAENGNEDAQKIVGGPRKRRR
>NZ_CP017769.1|WP_058699247.1|1678698_1680477_+|HSP90-family-protein
MENQKQFQFQVNMKGMIELLSEHIYSSPTVFVRELLQNGMDAVTVRKGIDESFKGKINITFEGDRLIFQDNGVGLTQDDVHQFLSVIGQSSKRGELADKDLIGKFGIGLLSCLVVSEAIVVESRSLYKDESVRWTGRADGTYEVEMIPLLDEVGTKVILDAKKAWRSLFKRDEVKQNVLFYGSALPIEVNLIEKGEVEQCLDGNPVWLDNESSKEQLLEYGKEVFKTKFLDVFRLYSEAGEIQGVAYIIPNKVNTTATKEHKIFLKKMYLCDQATNLLPEWTSFVRCIFNSNALQPTASRESLMNNAVLQESKKELSECFKDYLKTLSITNPEILEKIISIHHMFIKALAASDNEIMTMFEDYLPFETNQGMMAFGEIKETYKNIYYTPSLDDYRQIRRIAGSQNKLVINAAYSYETDLIEKLKRSHAELKLERIAPNDILEEFEDAIEDSQRIENFIDKANKILKRHFCRAEVKRFEPKDTTAIYIANEDALTSKNIQSLSQTSNPFASTLQHFKKKEEVMPTLCFNQQSELVEKVMLIDDDELFEALINVLYVQALMLGGYTINKREMDTFNDALYQFMILGMSNFLPKF
>NZ_CP017769.1|WP_058699248.1|1680479_1681556_+|hypothetical-protein
MYRLEIQKLLLAIDENLDDQELCLSFIRQGIQIADKHNDLDWGVELRYSLIHEERATSGCTESVLAFAWILDVCDRYPERFHESEFLLEYEWMLCSAYSNASLSTEQILAVADDLYARLERNHISKRGYYFTMAEYVQNIGDYAKGEEYIKLAMQEPYDDENIEIMEYDYRIENLVLMGRFDEAIVLMEQVELKKLSDFALPFETYCAMAYCMAKVEDVRASIYLEKAKASFETLREVNSSMLYSMTRLMYAMYLLKDSVMWSTFERIADWEIDAEDDLQFMLSRHAALICAQGGVIALDLSPRLSYYEPNGKYDLTQLYEYYDNIATRLGLQFDSRNGSDFCSKEYKELKMMNGIKV
>NZ_CP017769.1|WP_006257436.1|1681558_1682620_+|hypothetical-protein
MNYNLEIQKILLKVEELPSFSDKVKALKEAIALADKHNDLDWGFDLRLTLIQKERNTSKCEESFPAFAWILNASDSNEDYFDESEFLWEYKWMFCSAYRNASISLEQIKEIGDDLRRRLTKNGYSDRAYYNVMTGYALHLRDYKLAQEYIRLADEEILDDMANCPACELDTKVETLLDLGHIDESLVKAQDLINKKLTCYSMPFQTFCSFANKLYDAGDDRASIYFDKALEEYHAHDQYDSSVGYSMGELVSYMAKTKHPEMWSFFSRICEWQLGAEDIHIYNFAKAMAPLMKGEGEVTLSLSPLLPYYQESGVYKLSDLYTYFKDTAYDYANRFDQRNHNTNFIQEVDKALN
>NZ_CP017769.1|WP_058700020.1|1682721_1683912_-|hypothetical-protein
MIAKIQLKLNNDVLLTVIKMVKHTDDYIVENVTDALLISIKEDLINKLEDKAKTIQKQVSILDHNKKHSLVLKYHEAYSMYKLLEAVHEKELFNDNLHIKKIKRLISELHNKLDIFAKEEDITIIDEDLVEDNPIEVTETKPERILVLEGVEDAHTVDPNQVEIPILFDMTDAFSDHEEEINMPNEELSHEVVSTMPNTLEELFTPSVEEEIIPDNELPLDHNSYLEKEMDVTEETIGSTEESNTTSETFPTQETIYSTEEDLFMTSIPESQPKLDWERITTEDPSPSSEKKNTVEQVTFSDPKYNELFNIAKTGINVDEQDLINHEPIISSQPEQEMNTLLTEEEDIPYSQDVMQIEIFDVEMIEVEPSEQKEKKEKKKEKKIVKAEQDGQISLF
>NZ_CP017769.1|WP_058699249.1|1684313_1685312_+|2-hydroxyacid-dehydrogenase
MKIAFFSTQPYDVTFFDKENKQFGFELEYFETGLDEQTVNVITEGTDVVCVFVNDKVDAEVISNLAKKDVKYIALRCAGFNNVDLDAAHQHNIRVCRVPAYSPEAVAEHTLAMLFTINRKIHKAYNRVREQNFSLNGLLGTNIYKKTVGIIGTGNIGAVFCRMMKALGTEVLAYDIYKNEQLEAEGIRYVELEELFTKSDIISLHCPLTPDTMHLINEDTISKMKDGVMLINTSRGKLIDTHAIIQGLRAKKIGALGIDVYEQEEKVFFRDLSGTILEDERLQLLTSFPNVLVTAHQAFFTDEALTQIAFITLDNLKQLKTNNEIVGRNAEL
>NZ_CP017769.1|WP_058699250.1|1685411_1687781_-|TonB-dependent-receptor
MKNLFTLLLTILCSQFILAQSSIKGTVVDQTNTPVDYAEIQLFRPNDTFVKQSFSDETGLFSMEDIAKGDYVLKIFHLGQLVSEQQLAVQSDVDLKNISVKNDQQLDEIVLHAEKRLVERKVDRLVYNTANSIASQGMDALEALATTPMVKVQNDKISISGKNNVRIMVDDRMLELQGDALTNYLRTLRSDDIEKIEVITTPSAKYEASGNAGIINIILKKNKRMGVYGTVSSNYSYNNYNSGGGNGSLNYQNKKWSVMLKGNINNSNNSNTNDNTYQDDKRYLGNNSLNESSYKNRGASITTNYQLTDNAVIGGSYNYTKFSGDPRAFTASTYKSYPFTATDSIINSVNRSYTKNNYHTANLFFDQKLDTLGSKIAIGANYFSNSPDQSFDIKEFDNSSVLRRYNTYTNTLKYSVYSLNADLTYHLPWAEVEFGAKYTTYDNKAQVTYFNIKNGNATLDPLKSNRFNYTEDNYAAYLSFTKQLTEKWSVKGGMRYEQTEAKGHQLDNNEKFTKSYGKWFPTAYVSFTPNETHSFSFNYSKRINRPYSNVLNPFKYYSNSYTYHQGNPELNPSYTNNYELSYVYNGALSVNLNYYHMTDQFDYMNKYIDGVFMSSTYNMLNSDNYGVDVSYNNAITAWWETNSGLEYIISSPYYRNEAATQVGLKGNLFDYYSQNTFSVNNAKTLKLLLNWYHQIPHKEDNTRYSSYSSLSFGAKLALLDKKLNVNMTMQDIFNTGKSNGTSYYKDNVQSFKNSWNSRRFSISASYTFGNSKNKKAIQEANFEDKNRSN

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Crispr_ID: NZ_CP017769_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_5

2896024-2896155

Orphan

Consensus_repeat	Method
ATTGTATTTTGACCTAGTGCTAATGGAGTGATACGACATATATTATGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_5

>merge|NZ_CP017769|5|2896024-2896155|CRISPRCasFinder
ATTGTATTTTGACCTAGTGCTAATGGAGTGATACGACATATATTATGTGACACGGAAGATATTCCGTCTCTACCTTATGTAGATTGTATTTTGACCTAGTGTTAATGGAGTGATACGACATATATTATGTGA

>NZ_CP017769|5|5|2896024-2896155|CRISPRCasFinder
ATTGTATTTTGACCTAGTGCTAATGGAGTGATACGACATATATTATGTGA	CACGGAAGATATTCCGTCTCTACCTTATGTAG
ATTGTATTTTGACCTAGTGTTAATGGAGTGATACGACATATATTATGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_071307350.1\|2882770_2884264_+\|malate:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|377591
NZ_CP017769.1\|WP_006261055.1\|2906749_2907244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006259065.1\|2907271_2907814_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006259083.1\|2882272_2882680_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|340815
NZ_CP017769.1\|WP_006265170.1\|2886631_2888671_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP017769.1\|WP_006265176.1\|2905949_2906735_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|179371
NZ_CP017769.1\|WP_071307351.1\|2892417_2895852_+\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|239650
NZ_CP017769.1\|WP_006259073.1\|2898843_2899257_-\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP017769.1\|WP_006265173.1\|2901863_2902421_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP017769.1\|WP_006261047.1\|2896306_2898742_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP017769.1\|WP_006261053.1\|2904438_2905887_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265171.1\|2891511_2892279_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_036497081.1\|2902486_2902885_+\|DUF3995-domain-containing-protein	unknown	unknown	gnl\|CDD\|372505
NZ_CP017769.1\|WP_006259072.1\|2899256_2901431_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|234750
NZ_CP017769.1\|WP_006259078.1\|2890060_2890360_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|316153
NZ_CP017769.1\|WP_006265169.1\|2884447_2886466_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP017769.1\|WP_006259077.1\|2890374_2890998_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006259079.1\|2888726_2890010_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|377608
NZ_CP017769.1\|WP_006259084.1\|2881080_2882253_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100032
NZ_CP017769.1\|WP_006265175.1\|2903013_2904279_+\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|188463

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_071307350.1\|2882770_2884264_+\|malate:quinone-oxidoreductase	gnl\|CDD\|377591	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.	0
NZ_CP017769.1\|WP_006259083.1\|2882272_2882680_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|340815	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family. Escherichia coli YqgF has been shown to act as a pre-16S rRNA nuclease, presumably as a monomer. It is involved in the processing of pre-16S rRNA during ribosome maturation. The RuvX gene product from Mycobacterium tuberculosis was shown to act, in a dimeric form, as a Holliday junction resolvase (HJR). HJRs endonucleases specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.	7.91736e-42
NZ_CP017769.1\|WP_006265170.1\|2886631_2888671_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.82461e-30
NZ_CP017769.1\|WP_006265176.1\|2905949_2906735_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|179371	PRK02113, PRK02113, MBL fold metallo-hydrolase.	1.29441e-93
NZ_CP017769.1\|WP_071307351.1\|2892417_2895852_+\|methylmalonyl-CoA-mutase	gnl\|CDD\|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
NZ_CP017769.1\|WP_006259073.1\|2898843_2899257_-\|DUF393-domain-containing-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	8.40747e-39
NZ_CP017769.1\|WP_006261047.1\|2896306_2898742_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP017769.1\|WP_006265175.1\|2903013_2904279_+\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|188463	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase. This enzyme represents one of at least two mechanisms for reclaiming CoA from butyryl-CoA at the end of butyrate biosynthesis (an important process performed by some colonic bacteria), namely transfer of CoA to acetate. An alternate mechanism transfers the butyrate onto inorganic phosphate, after which butyrate kinase transfers the phosphate onto ADP, creating ATP. [Energy metabolism, Fermentation].	2.7971e-103
NZ_CP017769.1\|WP_036497081.1\|2902486_2902885_+\|DUF3995-domain-containing-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	2.68389e-20
NZ_CP017769.1\|WP_006259072.1\|2899256_2901431_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	6.22505e-119
NZ_CP017769.1\|WP_006259078.1\|2890060_2890360_-\|transcriptional-regulator	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	2.73094e-30
NZ_CP017769.1\|WP_006265169.1\|2884447_2886466_+\|hypothetical-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.37084e-24
NZ_CP017769.1\|WP_006265173.1\|2901863_2902421_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.72899e-20
NZ_CP017769.1\|WP_006259079.1\|2888726_2890010_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|377608	pfam06123, CreD, Inner membrane protein CreD. This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with an Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA.	1.44951e-122
NZ_CP017769.1\|WP_006259084.1\|2881080_2882253_+\|hypothetical-protein	gnl\|CDD\|100032	cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	2.45373e-73

>NZ_CP017769.1|WP_071307351.1|2892417_2895852_+|methylmalonyl-CoA-mutase
MQQNTPYTPTNKVRIVTAAALFDGHDAAINIMRRIIQSTGCEVIHLGHDKSVEEVVNTAIQEDANAIAMTSYQGGHNEYFKYMYDLLQEKGAGHIRIVGGGGGVILPSEIKELMDYGITRLYSPDDGRAMGLQGMINDMVGKADYPTMDLQLPEGKDVYQSLADKDVTTIARLISLAENREEDFLNVFQYDEKKHKNTPILGITGTGGAGKSSMVDELVRRFLIDFPEKTVALVSVDPSKRKTGGALLGDRIRMNSINNPRVFMRSLATRQSNLALSRYVEETLQVLQVANYDLIILETSGIGQSDTEILDHSDASLYIMTPEFGAATQLEKIDMLDFADIVAINKFDKRGALDAIRDVKKQYQRNHNLWDVNPDEMPVFGTIASQFNDPGTNALYKAIMDKVVEKTGADLTSSFEITKEMSEKVFVIPPNRTRYLSEIAENNRKYDETVLTQKEVAQKLYGIFKTIETVAGKLPEIDKSGIVEETIASKDADTQLFINLLLKEFDKVKMNLDPYNWEVILTWDQKVNKYKNPVYSFKVRDKEIKIATHSESLSHLQIPKIALPKYEAWGDILRWSLQENVPGEFPFTSGLYPFKREGEDPTRMFAGEGGPERTNRRFHYVSLGMPAKRLSTAFDSVTLYGNDPGHRPDIYGKIGNAGVSICCLDDAKKLYSGFNLAHALTSVSMTINGPAPMLLGFFMNAAIDQQCEIYIKDNDLVAEVEAKIEAIYKAKGVERPRYNGELPEGNDGLGLMLLGVTGDQVLPKEVYAEIKKNTLSQVRGTVQADILKEDQAQNTCIFSTEFALRLMGDVQEYFIEKNVRNFYSVSISGYHIAEAGANPITQLAFTLANGFTYVEYYLSRGMDINDFGPNLSFFFSNGIDPEYAVIGRVARRIWAKALKNKYGANERAQMLKYHIQTSGRSLHAQEIDFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLIINKELGLAKNENPIQGSFIIEELTDLVEAAVLAEFDRITERGGVLGAMETMYQRSKIQEESLYYETLKHNGTFPIIGVNTFLSSKGSPTVVPAEVIRATEEEKLFQIKTKENLNKANEALVKEELERIQEVAIQNGNIFEALMDASKVCSLGQITSALFEVGGQYRRNM
>NZ_CP017769.1|WP_006265171.1|2891511_2892279_+|hypothetical-protein
MTQITSYTFSTAKALTAEQNIDYNHQVDQFNVWPAYVLADTVNLTYWDSIYELFADYQFYLLEGNVVVGNGNCIPLHLTAEELADLPEGGWDWALEKAVKDHEKGLIPNTLCALQIGLNKNYQGKGISHKLIQYMKSIALSTEMNAFILPIRPNLKTNFPLISMDDYIQWENEEGLPYDAWIRTHIKGGAHIVKICQRSMVVEGSIAEWEQWANMKFRSSGEYILPVLLNPIQIDLEMDKGEYIEPNVWMRYELD
>NZ_CP017769.1|WP_006259077.1|2890374_2890998_-|hypothetical-protein
MTNKAIEDLNQIKSIMERSTKFLSLSGWSGIWVGLCGLIAASVLYYWQTSSTYSYENLTLEDPYQTAYTAEMLLVLAIATFVIAVVGGFFFTIRKTRKQGKSFLNQVTKRLLVRFSIPLIIAGILCLILHKYHLLQFALPTTLLFYGLALFSVQEDTVKEVKAIAALEIVLGLLAFYFLDYTLLLWAIGFGLVHLLYGIILWNKYDK
>NZ_CP017769.1|WP_006259078.1|2890060_2890360_-|transcriptional-regulator
MKFDLEKLNKVFDNRIRVGIMSGLMVNDSLSFKDLKEYLDLTDGNLASHLKNLEESNYITVTKGFVGRKTNTTYTVTEEGKLAFKQHLAYLENLIKKLK
>NZ_CP017769.1|WP_006259079.1|2888726_2890010_-|cell-envelope-integrity-protein-CreD
MKKENYKPMIKGVIISVLSLMLLITLPFISSLISERESFQSEVTTEVTSKWGQKQTIYGPFVLVEYYTNHLTEDGKVMKQLNSYLQTPIKQDFTGDIKTQIKKRSLYEVALYNTNLNVKASFPTLDELASTLNLADKEAFTNAKIVFSVSDSKGFTQEILINKNPQQYFEQDRSLRINSSIAFLSYDINKEDIDLSNINFPIQLKGSTEINFLATAKQTNVNVTSDYKDIKYIGNYLPDNDEKQSVNEHSKWTIFQSIPISSDLNTITQLTDYSFGMKFLQMNDFYSKVNRATKYALLFIGLTFATFFFMENIKNLSINILHYTLVGLALCINFVLLLSFAEYIGFSYAYIISASATIILITSFIFGLSKNKRIAATIFGLLFVLYAFLFFLLQLKEAALIVGSIGLFTIIAILMYFSKRINFTSEE
>NZ_CP017769.1|WP_006265170.1|2886631_2888671_+|two-component-sensor-histidine-kinase
MFKLRVLYFAVLCISMSMIHCTQTETNKEDLKLEEINAFIKSYNRFNPTDKDKAAADSLGNVILNLRNTEQSRNALRKYILLTNADKQYIEELFKRSRKADDKKNEAQAYFLRGKRYAQSFQIDSTYYNYTKAEFLFKSIQDSVNLQEVYSHKAIILLNNKIFTEGQSQILKAMNVNKEHKDARIKYSESIIMANALVGLEQLPEALKQLELSLKLLDNPEIVKFFLPDAIRLNKITIYYNIAEVYIKQGEYKKAQNLIHNVIDKYINESTIYDEMMLAHLLYNLTQADIKSKHYDDVEKNLVRAIDIQLKNKNLQDYNSYKILLAEYFYLIKKEEQGNQLVNEVLEYAHQNNNLGLEKETLTVLLKYKKEQYNTNFVRYEELNKLILDENNVIKNTFARLSFEADSLERANEQLQNQKNVITMVSSALLVIAITIFFVILFRQKAKEVSLVKLFQKDTEKYYDSIINVQNELAEARNIERKEIAKELHDGVLNKLFVTRFLLMQVSKESVETHKDSLINEVKEVEQYIRDVSHVLGHEEDFKNKEFNELIRDLVGIQNRNQVTKFILFMSNDICFSRLSIKFKVHIYRIIQECLQNVQKHAKATECQVSILLREETRFEVIIKDNGVGFDTDIVKRGLGFTNIKARTQLMNSKINISSTEGKGTSISFTIDLNESVEC
>NZ_CP017769.1|WP_006265169.1|2884447_2886466_+|hypothetical-protein
MTSKSLYLILPFWVLVFAIYGCDNSKRNDIINHSIKEFLKNYNTDAVNDLMLKQADSIGKLVLLLPNSRGNREIIKDYINKTKAHKKYCDRLYDYAVEDRDSIDIANAYLLTGQYYLSNLVFDSAYYYYNQAEKLYLIKKDSLNISYTYYIKAYVLNKNGVYSEAEKQILKSIRYNTKEISIRRRHQQYFTIGDVFSGLGMYEDALHYYNQAFELLSDKTILSEESEAYINLSKTYLVDNVAKVYIKQEKYLKAKELLLEGIAKYINFNDVTSERYYAYLAISLASAKLKTNDYKGIHALLNEIIEIGKRNKNRIIIHKAELVLAEYYFVTGQLNLGFPLVERILEEVRSVGDFENQLKALELLISYDSDRSDQFFIEYVEISKRFKGEGNLIQNSFIRIKQEADSLNELNKTLLERNRLLSTITISLFVIVTIILLAYIYHLKIKKIGLIKMFQQDTEQYYNSIINVQKYLAVAKDRERKIIAKELNDGVVNRLFATRFTLMQLKKEEIDNHKDVLVNEVVEVEDYIRNISHSLVNEEGGKVQGFQQLLQELVLVQKRQSNIDFSILIDAKLDLECLDHRKRINIYRSIQEVLLNVALHSNASKCVVDIKLKTPVSFEIAITDNGTGFDTRSIKGGYGLPNVKERIEIIEGKLFVISKKGSGTKILFIIYF
>NZ_CP017769.1|WP_071307350.1|2882770_2884264_+|malate:quinone-oxidoreductase
MSSIQKSEADVVLVGAGIMSATLGVLLKELKPNLKIEVIERLDSAAAESSDAMNNAGTGHSAFCELNYTPEKADGTIDASKAINIVEQFEVSRQFWSYLVNKGVLKNPSNFIHTVPHMSFVWGEDNVNYLRKRYNELQKYPLFQGMEFSDNKEKIKEWAPLIIENRKENEVCAATHMNLGTDVNFGDLTRQLFDHLKSEDGVNMTFNCEVKDITKTGSEWTVSATDSKGQKKVIKSKFVFVGAGGGAILLLQKADIAESKGYGGFPVGGEWLVCRNPEVVKKHMAKVYGKASVGAPPMSVPHLDTRFIDGKHSLLFGPYAGFSTKFLKRGSYWNLIKSLEFNNIGPMLGAGLRNMDLTKYLIEQVLQSSKSRYAALREYYPDAKEEDWKLEKAGQRVQVIKKDKDGKGILQFGTEVVSAADGSIAALLGASPGASTATPIMLKLLSQCFKEEFKSAEWQAKFKEMIPTFGLKLNEHPELVASTRDNTSKTLKIYPYN
>NZ_CP017769.1|WP_006259083.1|2882272_2882680_+|Holliday-junction-resolvase-RuvX
MARLLSIDFGKKRTGIAVSDELQIIASGLTTVDTEQLLPFLKDYFSKEKVEKVIIGEPKRLNNEPSEVVPLLNSFIEKFKTSFPDMPVERIDERFTSKMAFQTMIDSGLKKKQRQNKALIDEIAATIILQDYMRR
>NZ_CP017769.1|WP_006259084.1|2881080_2882253_+|hypothetical-protein
MSSNNRYALRGVSAEKEDVHNAIKNIDKGLFPKAFCKIIPDHLTGDEDYCLIMHADGAGTKSSLAYMYWKETGDISVWKGIAQDALIMNIDDLLCVGATDNIMLSSTIGRNKNLVPGEVISAIINGTEELINELKSFGVTIHSTGGETADVGDLVRTIIVDSTVTARMKRSDVIDNANIQAGDVIVGLESFGQATYEKGYNGGMGSNGLTSARHDVFDHSLAAKYPESYDSSVPEELVYSGKVHLTDVVEGSPIDAGKLVLSPTRTYAPIIKSILNKYKSDDIHGMIHCSGGAQTKILHFVDKLHIIKDNMFPVPPLFKLIQEQSNTDWREMYQVFNSGHRMELYVRPEVAADIIAISESFNVKAQIVGRVEASEEKKLTITSEYGTFKY
>NZ_CP017769.1|WP_006261047.1|2896306_2898742_-|phenylalanine--tRNA-ligase-subunit-beta
MHISYNWLKQFIKLDITPEETSEILTDLGLEVEGITTYESLKGGLRGVVVGHVLSCTKHPNADKLNVTKVDLGTGEPVQIVCGAPNVAAGQKVPVATIGTELFDAEGNAFQIKKGKIRGEESFGMICSEVELGLGTDGSGILVLEDKWEPGTPAATLFNIATDEVFEIGLTPNRSDAMSHWGVARDLRAGLLQNSKEETQHKELITPSVSKFKVERRTLKIDVSVEDYKKAPRYCGVTISGIEVKPSPDWLQNRLKAIGITPKNNIVDVTNYVLHDLGQPLHAFDAAKIKGGKVIVKTVAAGTKFVTLDGVERTLHEDDLMICDENGPMCMAGVFGGSKSAVSESTSNIFLESAYFNPVTVRKAAKRHGLNTDSSFRFERGVDPAITEYALKHAALLIQQVAGGEITSDIIDLYPKKVEEHSVFLNFNNINRLLGEEISKETIKKILVSLDIKVHSMSDVGIGITVPAYRADVTREIDVIEEILRVYGFNNITFSSKLNATIANSSRTEDHRVTNIVAQQLVAQGFNEIMNNSLTTPDYTELSENIKSNYQVDILNPLSHDLSVMRQSLLFGGLESISYNVNRKRGDLKFFEFGKTYHKMLNNFEEYKRFSVFATGNITKASWNSEQKPISFFDFKGYINGIITRLGLAKISTQPVESDLFSEGIAYYIGKELIVEFGILKKSVTKHFDIKQEVCYAEFNWDNVLKVVSAKIKIAEINKFPSVKRDYALLINEAVTFEEIYNLVKQVDKAVIKDVTLFDVYQGEKIEDGKKSYAISIIMEDVTKTLTDSQVDKIMGKVKYQLENVLQAQLR
>NZ_CP017769.1|WP_006259073.1|2898843_2899257_-|DUF393-domain-containing-protein
MLDIPRNKKIILFDGVCNLCDSTVNKVIKADHQDQFRFVALDSEKGKEILNYIGIDRTKIDSIVLYEPGVAYFIKSKAAFEIASALGGKYSLIGIFSFLPTGITDALYEYIAKNRYKWYGKKESCMIPSEDIKQKFL
>NZ_CP017769.1|WP_006259072.1|2899256_2901431_-|DNA-mismatch-repair-protein-MutS
MTSINKKTLQDLEFNTVLETVSALCTTEAGKEAAMEICPLKTEAGTMRALKQTSEYVSSFTNNNIIPNHYFDSIDYELKFLGIENSFLEVSSFKKIQTLTDTTITLISYLKKFEEYYPNLYHEAEQTPLEKSILKEIDNVLDKYGEIKDNASLDLLNIRKNINIVRGKINQSFGAALTQYNSSGYLDDIRETVVENRRVLAVIAMHRRKVKGSVLGTSKTGSIVYIEPEATLRFSRELNNLEYEEREEIVRILKNLTDAIRPFRDLLLEYQSFLTYIDVTAGKAKYANKINGLLPEISKEREMYFREAYHPILLLNNRAKNKPTYPQTINLEQSSRIIVISGPNAGGKSITLKTVGLLQLMLQSGLLIPVHERSKTFLFDRILTDIGDNQSIENHLSTYSYRLKNMNYFLKKCNDNTLFLIDEFGTGSDPELGGALAEVFLEEFYDREAYGIITTHYTNLKILADELPNATNANMLFDEKSLEPMYKLNVGQAGSSFTFEVAQKNGIPFSLINRAKKKVEGDKVRFDKTIANLQKERHKLERTSQNLKEEETKARDESKKMETINAKIQEKLERYQELFDSNQRLVALGQRLDDLSEKYFNNKSKKTLFGEVLKVVEIENSKRKKVTIKEKKEKEAQQKELIKEVEQKVEVIRKEKKEEKAKKQLQDAQKKTNFPLKVGDRVRMIDGRSVGTIDVIEKNKATVNYGIFTSKVSLDQLEMVERKK
>NZ_CP017769.1|WP_006265173.1|2901863_2902421_+|Crp/Fnr-family-transcriptional-regulator
MQSNHFVDRLLEDLQDSVIYRTLTKGEEILQLGEVCDYVGIVRKGSLRMYYIDAEGDDVSFAFYLSNHIFTNYEGVLTNAPSQLTIVATEETEVELIRKSDLFAYYETSIEAQLLGRRMAELIFLEAKKRIDFLLFLNPEQRYLQLIESTPEVFKCIPQKYIASYIGVRPQSLSRIRKRLNEKGY
>NZ_CP017769.1|WP_036497081.1|2902486_2902885_+|DUF3995-domain-containing-protein
MSLEVMIKIVNTLIFSFLSAVHIYWALGGTWGVVGVLPTKDGERKLNPSPIGTLVVASGLAVFAGISLGDVSAYKWVYLVMGILFGLRAIGDFNYVGVFKKVKNSVFAKKDTTIFIPLCFYLSLSNIFLYMS
>NZ_CP017769.1|WP_006265175.1|2903013_2904279_+|acetyl-CoA-hydrolase/transferase-family-protein
MKYVSASEAAKVVKSGDRIYVHAAAATPNILTKAISDRAEELRNVEFCHIHTEGAAPYADPALSESFHVNSFFIGKNVRHTIAAGNGSYTPVFLSEVPNLFRKGALKVDVVLIQVSPPDEHGFCSLGTSVEATVAAMECAKVVIAQVNKYMPRTFGDSVLHISKIDMAVEHHTAIYAQKQAVITDTEALIGDHVAALIEDESTLQMGIGSIPNAVLSRLTNHKNLGLHTEMFSDGVIDLIESGVIDCSKKTIAKGRALATFLIGSERLYKFVDNNPFIVMKESSYVNDTAIIRQNPKVVAINSALEVDVTGQICADSLGVHMYSGVGGQMDFVRGASLSKGGKAIIALSSTSNKGHNRIVPFLKQGAGVVTTRAHAQYIVTEYGVADLYGKTLKQRVDAMVEIAHPDFREEILKIYHDSIK
>NZ_CP017769.1|WP_006261053.1|2904438_2905887_-|hypothetical-protein
MKNFAEDLVLNGDRVIEHHPAISDKALKINLNNDIYGTFAEIGAGQETVRHFFRAGGSSRTVAKAMSAYDKVFSDAIYSVEEDGRYVTESRLIKMLDYETRKIEERLIREENPNKTFFSYANTVATIDYAKKNKGHGWVGIMFQTASNQAYNKIVLHIQFKETDSKLQQETLGILGVNLIYGAFYQHHDAKKLIHSLYDHLDKDQIEIDSINFSGPIFETVDNRLMSLQLVKNGMTDAVMFSPSGRSELAANILYKQNILALRGSFRPVTIVNMDMYQKSLDKFMTQNNLDKENTKVVFEITLSNLLAEGSLDEIDFLDRADLLCSLGQTVMISNFQEYYKLTEYFSKYTDQKIALAMGVSSLLNIFEEKYYTHLTGGILEGLGKLFRNTMKIYLYPMIGNEEQIVDSTNLKVDLHIKELYKFFKKNNQIIDIEDYEKDHLSIFSRDVLKLLQQNQNGWEEKLPEGISKIIQEKELFGYKRK
>NZ_CP017769.1|WP_006265176.1|2905949_2906735_+|MBL-fold-metallo-hydrolase
MWKIYVILEVYFLGTGTSQGIPIIGIDHPVAHSIDSRDKRLRTSVLVKWDEHTILIDCGPDFRQQMLTAGCSKLDAIFFTHEHADHIAGLDEIRPLTFLHGPLPIYAQDRVIKALERRYDYIFTKEDRYPGAPSVEEHSITSQDTITIGEKTIIPIDVMHGPLPILGYRLGDLVYITDAKYITDEEVEKIKGCKVLIVNALRIKDHPTHFSLEESLAFIDRIKPEKAYLTHIAQDLGFHKDVENILPKDVYLAYDNLKITI
>NZ_CP017769.1|WP_006261055.1|2906749_2907244_+|hypothetical-protein
MKHKAFFYLFLFSLVILVLLYANNKNMYKMEGKKIEIAHKRIDIVRDSLKEVTKDFNEANYFSIEYNEDAQEYFNYKTIDQSLTSIKEEVLALNHQDNGNPLVPYGVINGEKCVINKVKVLNHRWIIADFYAGAVHGEVLIKYFYTEGKPTEFKTIDTVMYATK
>NZ_CP017769.1|WP_006259065.1|2907271_2907814_+|hypothetical-protein
MKKSISLFVILLLTMTSCDFILKDNKDDNEKGMVITDGSTEIVTLDEDDEVLGCAYSAGYRWSELENNCIRIFEIGFRLNPIGLEEDTTEDNALEDNSVSCFVTYAKDKKKAEIFLPNHKKGIVLELTKDKSAYINDGWELSNEGMVLKHKGETAFTAAKTIELKIINSDQPVEEDVHEE

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Crispr_ID: NZ_CP017769_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_6

2971205-2971278

Orphan

Consensus_repeat	Method
TTACTACGGAGGCGCTGCGCTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_6

>merge|NZ_CP017769|6|2971205-2971278|CRISPRCasFinder
TTACTACGGAGGCGCTGCGCTAGGGAGGCGTGCACTCCGCTTCACTTCGTTTACTAGGGAGGCGCTGCGCTAGG

>NZ_CP017769|6|6|2971205-2971278|CRISPRCasFinder
TTACTACGGAGGCGCTGCGCTAGG	GAGGCGTGCACTCCGCTTCACTTCGT
TTACTAGGGAGGCGCTGCGCTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006261108.1\|2973870_2975397_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP017769.1\|WP_006265194.1\|2964240_2965062_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006261104.1\|2968861_2969044_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265200.1\|2975467_2977525_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP017769.1\|WP_006259007.1\|2967924_2968719_+\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP017769.1\|WP_006265196.1\|2965921_2966479_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265201.1\|2979366_2980437_-\|DUF3810-domain-containing-protein	unknown	unknown	gnl\|CDD\|378933
NZ_CP017769.1\|WP_006265192.1\|2963144_2963987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006259000.1\|2977524_2977749_+\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NZ_CP017769.1\|WP_006265197.1\|2966812_2967670_+\|DNA-damage-inducible-protein-D	unknown	unknown	gnl\|CDD\|183178
NZ_CP017769.1\|WP_006265198.1\|2971524_2972256_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP017769.1\|WP_058699569.1\|2972418_2973627_-\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_CP017769.1\|WP_006265195.1\|2965064_2965703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265202.1\|2981606_2982518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006258997.1\|2980511_2980775_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NZ_CP017769.1\|WP_006258996.1\|2980941_2981499_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006261105.1\|2969441_2971130_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP017769.1\|WP_006259008.1\|2961424_2961613_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006258999.1\|2978072_2979362_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP017769.1\|WP_006265193.1\|2963988_2964228_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006261108.1\|2973870_2975397_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP017769.1\|WP_006258997.1\|2980511_2980775_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	1.27385e-09
NZ_CP017769.1\|WP_006265200.1\|2975467_2977525_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	8.82286e-08
NZ_CP017769.1\|WP_006259007.1\|2967924_2968719_+\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	7.88185e-28
NZ_CP017769.1\|WP_006261105.1\|2969441_2971130_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP017769.1\|WP_006265201.1\|2979366_2980437_-\|DUF3810-domain-containing-protein	gnl\|CDD\|378933	pfam12725, DUF3810, Protein of unknown function (DUF3810). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 333 and 377 amino acids in length. There is a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterized family of peptidase enzymes.	9.78067e-101
NZ_CP017769.1\|WP_006258999.1\|2978072_2979362_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.54859e-135
NZ_CP017769.1\|WP_006259000.1\|2977524_2977749_+\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	1.96299e-35
NZ_CP017769.1\|WP_006265197.1\|2966812_2967670_+\|DNA-damage-inducible-protein-D	gnl\|CDD\|183178	PRK11525, dinD, DNA-damage-inducible protein D; Provisional.	2.1339e-135
NZ_CP017769.1\|WP_006265198.1\|2971524_2972256_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.82981e-48
NZ_CP017769.1\|WP_058699569.1\|2972418_2973627_-\|sodium/glutamate-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	7.99612e-146

>NZ_CP017769.1|WP_006261105.1|2969441_2971130_+|energy-dependent-translational-throttle-protein-EttA
MSDDKKVIFSMSKVSKTYSSTNKTVLKDIYLSFFYGAKIGILGLNGSGKSSLLKIIAGVDKNYQGDVVFAPGYTVGYLEQEPQLDETKTVIEIVKEGAAETVAILDEFNQINDMFGLPEVYEDADKMQKLMDRQAELQDKIDAVGGWELDTKLAIAMDALRTPEPDTPINILSGGERRRVALCRLLLQNPDVLLLDEPTNHLDAESVHWLEQHLQQYSGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKSTRLAQEEKVASKRRKNLERELDWVRQGAKGRQTKQKARLQNYDKLLNEDQKVLEEKLEIYIPNGPRLGTNVIEAKGVAKAFGDKLLYDDLNFTLPQAGIVGIIGPNGAGKSTIFRMIMGEQQPDAGTFAIGDTVKIAYVDQAHSNIDPEKSIWENFCDGQELIMMGGRQVNSRAYLSRFNFGGSEQNKKVSTLSGGERNRLHLAMTLREEGNVLLLDEPTNDLDVNTLRALEEGLENFAGCAVVISHDRWFLDRICTHILAFEGDSQVYFFEGSFSDYEENRKKRLGDVAPTRLKYKKLVR
>NZ_CP017769.1|WP_006261104.1|2968861_2969044_-|hypothetical-protein
MTENLLFAKSETCENNHENHYYDPSIDAYVCSTCNAISPANSIYDFEEKADDEYELHIGI
>NZ_CP017769.1|WP_006259007.1|2967924_2968719_+|DUF1275-domain-containing-protein
MLSHRGKERSFMQNLRLAVLLSFVGGVVNVSGFLALKLMTTNVTGYLSNFAQEVLTFNKQAILKSVLLLVSFFLGSFTSHVILQLQKLIWNKVYFTVPLILEAILLGGVAYLEGDILFQYPMKIAYVLLFAMGLQNSLVTFISKAVVRTTHITGIVTDLGIETARLLFNLTRVNLRNLLLSHIGLKLAIVFSFGVGGITAAFCFEYLHLRTLYIGVVVILFTTVYDYLVVKMMRVLEEGKQIVDWSKKVVTKDYKVYHILRRKK
>NZ_CP017769.1|WP_006265197.1|2966812_2967670_+|DNA-damage-inducible-protein-D
MGSDMQNINESLFEQIRQIDEAGNEYWSARQFAKVIEYVDFRNFERVLNKAKQACENSGYAVADHIVDFNEMVSIGSGAVREMPSYKLSRYACYLVVQNADPSKEIVAQGQTYFAVQTRIQEIRQMDEYANLSTEDERRLFLRNELAKHNTQLAAAAKDAGVIKPIDYAIFQNHGYKGLYGGLDAKAIHKKKGLSKSQQILDHMGSTELAANLFRATQTEDKLRREDIQGKAKANETHYEVGAKVRKTIEELGGMMPEDLPTVESVKKIEKQQTKMLNKKKDNDE
>NZ_CP017769.1|WP_006265196.1|2965921_2966479_+|hypothetical-protein
MNDNNLKTYKTEEISFEIIKEADKAYNYQGKLTPILDQLEGDFNQNTIDQIVLWKVNRYAEVDDSRMKVLNQIDKNSLELDVDLTREVLESLLACTGIQLAMASTILRFKNPHVYQILDQRVFRFIYGISLQEELRREKDQVKVYLDYLVKLKEVCNELSIVFEDSDRVLYELDKKYNKHIKLKY
>NZ_CP017769.1|WP_006265195.1|2965064_2965703_+|hypothetical-protein
MNTYFKQLESILTSNEFRDRLEQVNDNFPNLKQEHLIRDVILSMYNQQNTPSYRAFSEHPRRWELSYETKAKKKIGRVDLSFNKAGELDGAYKIELKFFFTKDIKNGRDSSVEKNFIKKECDLLMIIVQEFLDVEAKVAYDQTWGIDTNLLRYQLGANAREKQIFLKSKAKFKSLEEQFECVENGQMHDMIVVEVRKPYKTRYTFCFLERVK
>NZ_CP017769.1|WP_006265194.1|2964240_2965062_+|hypothetical-protein
MAIFKGSFIEFEKYVGPTTNKIITRLGKELKKTQKSCQNHQLGGEYCGVWKRLDAAHFSSKGRDRKSIIKVLLDSNFKIDDDLYEIDLDKFVSVFEDEHRMGELDSNLIMLCRQHHVAYDLPYKGKSFGGDYEVVEIAENDSITPLLLNKDISEHKTQLVKNAILEAVRHLAINSKNCSYAKFTNMKWQFDIKEEKLTQDLYFIFYTPRDYSFDIAKLTQQEIERITSDLKQKEYDDRKVEKSFVFLFDGEYYIEKNTNCKMEIIYSNHFEIS
>NZ_CP017769.1|WP_006265193.1|2963988_2964228_+|hypothetical-protein
MGILSVLSFLFSTDPKKEIEECKKRIENFESIKRTVRANVKNKKQKHYHDHARERIKTLDYQISKEREKIAAYRKKVKK
>NZ_CP017769.1|WP_006265192.1|2963144_2963987_+|hypothetical-protein
MSRDKDESVFSKVSGFFGNKEKKEEVFEAKVDKEGIFEGIKNIFFGEKKEEIIDIEAFEVVASDMEIIITERSINTEGKLIELKSTGTVENLEEKGLLDKLSDTASVTVGAVRDTVSIAVSTVVNTASESWDFTTEKLGVAKQATIEFSSSTADSLVHFTKEVGRRYDEIEISPKFYSLINTMDLVLVISSLQLLVEKQRKGSKEFIALSAVIGLLILLERSKEGMKKEMGFVEVNEELSHDLSSLLKSVTFKDMVETAEPILLIIPNGNYILLILKLFV
>NZ_CP017769.1|WP_006259008.1|2961424_2961613_+|hypothetical-protein
MPNNLNKNKILGYATLIMIMMGILLICLGAFKYSEIAGWGFTAVGIGFFAIAWVFNALKGRV
>NZ_CP017769.1|WP_006265198.1|2971524_2972256_+|MBL-fold-metallo-hydrolase
MNIEILHINAQSAEGQPTVFNPVVVGFADGTSYLIDCGFTYNFQEFKQELMHLGLMVADLKGIIISHDDIDHLEGLHKFKEEYVSLEVISSAIESDSVSGRVESERLIQVKESLTHIPEEMKGGVNDFIKQLEGIKRFEVTQTLEDGQFFKDTLQVIATPGHTKGHISFFDTESKTLIAADAIVVEEGEFNIANPQFTLDMEAALASVEKIKNLKPNRVICYHGGVVEEGIEEKLDRLIKRYC
>NZ_CP017769.1|WP_058699569.1|2972418_2973627_-|sodium/glutamate-symporter
MDFGIYETLMLACFVLLLGHFVVQKVNFFQKFNIPEPVVGGFIVAMFSWIAYSVTGKEFTIDENIQQGMMFIFFSSIGLNADFRSLIKGGKGLIIFLVIATVFIICQNFLGVTLAYLLELDPRFGLIAGSISLTGGHGTAGGWADTFMASATPLIGAKDIGMACATFGLILGGTIGGPLAYKLLRKNNFKELSPEQIQQNDETHEISVPSVVTDKKVNYKSIMLTITFLSICLVVGQYLAEWNTQYAFKLPTFVWCLFIGVVIRNVLPHLFKVKMHDESIEILGNAGLSIFLACALMSLKIWTVTDLALPILLILLIQVTMMLFFAYFITYRAMGKEYDAIVLSAGHCGFGLGATATAVANIQAVTSRFGPSPKAFLIIPMVGAFFIDILNALILNVFVTFL
>NZ_CP017769.1|WP_006261108.1|2973870_2975397_+|glutamine-hydrolyzing-GMP-synthase
MQHNVLILDFGSQYTQLIARRVRELNIFCEILPYNDMPKDLTEYKAVILSGSPYSVRSEEALHPDLSNIKGKMPLLAVCYGAQYLAHFFGGEVAPSDTREYGRANLDFIAEDAFFKDIPHNSQVWMSHSDTIKQLPTNGVLLASTKDVKNAAYKVEGEQTYAIQFHPEVYHSTDGAQLLKNFLVDIAGVSQDFTPNAFVEETITDLRNKIGSEKVVLALSGGVDSTVAAVLLHKAIGENLHCIFVNNGLLRKNEFQNVLNQYNGMGLNVKGVDATDRFMEALAGLEDPEQKRKAIGKSFIDVFDDESKLIEDATFLGQGTIYPDVIESISVKGPSATIKSHHNVGGLPDFMKLKVVEPLRMLFKDEVRRVGASLGIDPELLGRHPFPGPGLAIRILGDITQEKVRLLQEVDAIFIEGLREHGLYNSVWQAGAILLPVNSVGVMGDERTYEKVVALRAVASTDGMTADWVHLPYEFLMEISNKIINRVKGVNRVVYDISSKPPATIEWE
>NZ_CP017769.1|WP_006265200.1|2975467_2977525_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKKIFIALTAFVFTSSVLAQSGSFIQYRVNKGDTVSKISRDYDIPVSEILKYNPDAKNGINENSFLLIPTKDFVEKEKNKGANPLLKNDEKTKNTSTSKGTHTVQPKETMYSISKKYNVSINDLHTWNPSLKETGLLADSEIIVAPNTKKSSSMDVTQYEQDKPKKIPATLPSSTADTIKDINNIYYRNIDVEPKATLYSLAVTYNTSVQRLLELNPELKDGLKSGQTIKVPAYGFQAKAKVVEVTPETPKENKFIRLIVEPQQTLYSISRKYDVPIKEIIKLNPDLQQGLKSGMELILPYKEGLDIAVEENMPKEENEGYLTVDTTGGYVDLSNSISRLDHKELALLLPFNIDKLGDNIDAKLSSDGFLNMTLDFYSGAKMAVEYAESLNLPLTVNVYDSSESKNSSGVKSLFNSKDFSNTDVIIGPFYQSNVDAAVKALPNDKVILVSPLSNEKATASNRLVQTMPYSNVLKNQLLEYFKKTGAKITVIVDDKKQSTKQFMNQYFPEIKMISTSQIGEIDKTLVKDKKNVFVLDSNSIASALLFTDKLKNKTKDYDIQIASFDKSDVFDYSEIRIETLVDLKYTFPSVTRDSRESRSESLFGQEYKNRYNVYPNRFATRGFDVTLDVIFRMFQKEGFIPTIGKKSQEIENRFSYSRNPEGTLRNSGVYLLQYDTDLNVKVLN
>NZ_CP017769.1|WP_006259000.1|2977524_2977749_+|DUF3820-family-protein
MIDNEKYLVELAHTKMPYGKYEGRYLIDLPEHYIVWYHNKGFPKGKLGEQLGLIYELKLNGLEPLIRNIRNNFK
>NZ_CP017769.1|WP_006258999.1|2978072_2979362_+|NAD(P)/FAD-dependent-oxidoreductase
MMNIPTSKRPRVVIIGGGFGGLALAKKLKNKNFQVVLLDKHNYHTFQPLLYQVATGGLESGSIAYPIRKVVQNYEEIYFRLANVQRIDTENKKVVADIGTIFYDYVVIATGSKTNFFGNENITKNSMAMKTIPESLDIRSLVLENFEEALQTTDDQEQKALMNFVIVGAGPTGVELAGALAEMKKHVLPKDYPDLDFNKMEINVIQGANKVLDAMSEKSSRKAQEFLENLGVKVYLGEIVTDYKGKKVYTKSGKEFTAETVIWTAGVMGATVDGFDATVIQRGNRIKVNEYNQVEGFTDIFAIGDVATMMTDKTPMGHPMMAQPAIQQGELLANNLIRLRDGQPLKSFVYNDKGSMATIGRNKAVVDLPKFQFSGFFAWFVWMFVHLMSLIGFRNKLVVFWNWMYNYMMFDRQARLIIRPFKNKVDERE
>NZ_CP017769.1|WP_006265201.1|2979366_2980437_-|DUF3810-domain-containing-protein
MKLRYWLILFVCSILTFNIITRFPDAIEAFYTNGFYFYLCNVFNTITSLFPFSVGDILYTIIGLFLIHKFYQVFKKYKGWKKITMACAALTFKCIVIFYILFNIGWGLNNFRPTLESQLGIERGYDQEKLLNLTTKLIQRANLLQLAITNDSTIAVKLKQDINTILADSKKGIEQITFLHQIDNTNSLAIKESLFSLPLTYMGFSGYINPFTLEAQVNNKIPTLTMIVTASHEMSHQLGFAKESDANFIGFMAAYNQKDTAYQYAAIIYALRYCVSNINDRDSVEVKALFETIHQGVKDNLNENIIFWSEYKNITDSFFKVFYNGFLKLNNQKEGLQSYNKFVDLLINYDLKNPIL
>NZ_CP017769.1|WP_006258997.1|2980511_2980775_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MSKVKKGERTIFVCDGKKCCRYNEETKSCFKALLEESGLSNDYSLCKMKCQGMCKSAPVVYISSHDKYKKEVGVKKAKKIFQEYIIA
>NZ_CP017769.1|WP_006258996.1|2980941_2981499_+|hypothetical-protein
MKRVLFTLVICLMTITSFAQKTIDNPKKFLASLAAHCGKAYAGQIVSPNVPADFKDKELLMKVISCKEEEVKISFFVGEDLSRTWVFTLENGLVKLKHDHRHQDGTPDDITMYGGTATNTGFADMQFFPSDQETVDMMSTIAGNVWWVTIKDNTYTYNLKRVDSTGYFSASFDLSNEVKTDKMPW
>NZ_CP017769.1|WP_006265202.1|2981606_2982518_+|hypothetical-protein
MKINRIAKRGLFEYQKDRNEEGLMLYDFLEERVIRFADYKEWRINAISPDGKYIAINKISETTRAFKTDFAILRVDTQEQVFFTNTYFIYDAEFSLDSDKVLIVAHNKKPFCLDLATKEIIAEMPKNIRTYQGSFNKEKNQFIAPSETFKDTLYLFDFVSGETEKIKTSLKEKIGKVEYTNDSQHLIALTESSIVYCLDLSYKVIWSVDFNTLLESPVRINSSSMLLSEDNQYLMLEASSTETNNWGAEFVLNVKTGVLVNTIEGYQYRGRIQDALFGNEVLLYTYHTLDMLTGEVKELELKR

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Crispr_ID: NZ_CP017769_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_7

3463739-3464780

Consensus_repeat	Method
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	CRISPRCasFinder
GTTGTGATTGCACACCAAANACGTGTACAGTACCAAC	CRT
TGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACAA	PILER-CR

15 spacers

cas13b,Csx27

The CRISPR arrays of NZ_CP017769_7

>merge|NZ_CP017769|7|3463739-3464780|CRISPRCasFinder,CRT,PILER-CR
GTTGTGATTGCACACCAAATCTATGTACAGTACCAACGTATTCATCGATCAGATAGAACTTGTTAATGTTGTGATTACACACCAAATACGTGTACAGTACCAACATTGGACTAAAGCAGAAGAATGGATTACTAGTTGTGATTGCACACCAAATCTATGTACAGTACCAACATTGCAAAAGACGTAATGAATACGATTAATGTTGTGATTGCACACCAAATCTATGTACAGTACCAACATTGCAAAAGACGTAATGAATACGATTAATGTTGTGATTGCACACCAAATCTATGTACAGTACCAACAATTTAAGATCATGGAATTTAGAAACGCAAGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACCACAGCGTCACAGTTAGGCGCATTCAGAGTGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACAGATACACTATAAGGACTTTACAAGAAGATGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACCATCTTTCACTGTTGGGTGGAAGTGATCGTGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACAAAGAACAAGAGGTAACCTTTGTCAATAATGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACAAAATCAAATGTTTTTGATTTGTTGTCTTCGTTGTGATTGCACACCAAAAACGTTTACAGTACCAACAAAATCAAATGTTTTTGATTTGTTGTCTTCGTTGTGATTGCACACCAAAAACGTTTACAGTACCAACTTATTGAAGAAAGCTGGTCTTTGGGGTAAAGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACATACTCGCTTCAGAAGAACAATTCAAGAAGGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACGCATCATTATAATGATTCACTAAGTTTTTAGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACGAATGCTTATGATTTATTTACTTACAAATGGTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC

>NZ_CP017769|7|7|3463739-3464780|CRISPRCasFinder
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	GTATTCATCGATCAGATAGAACTTGTTAAT
GTTGTGATTACACACCAAATACGTGTACAGTACCAAC	ATTGGACTAAAGCAGAAGAATGGATTACTA
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	ATTGCAAAAGACGTAATGAATACGATTAAT
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	ATTGCAAAAGACGTAATGAATACGATTAAT
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	AATTTAAGATCATGGAATTTAGAAACGCAA
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	CACAGCGTCACAGTTAGGCGCATTCAGAGT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	AGATACACTATAAGGACTTTACAAGAAGAT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	CATCTTTCACTGTTGGGTGGAAGTGATCGT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	AAAGAACAAGAGGTAACCTTTGTCAATAAT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	AAAATCAAATGTTTTTGATTTGTTGTCTTC
GTTGTGATTGCACACCAAAAACGTTTACAGTACCAAC	AAAATCAAATGTTTTTGATTTGTTGTCTTC
GTTGTGATTGCACACCAAAAACGTTTACAGTACCAAC	TTATTGAAGAAAGCTGGTCTTTGGGGTAAA
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	ATACTCGCTTCAGAAGAACAATTCAAGAAG
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	GCATCATTATAATGATTCACTAAGTTTTTA
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	GAATGCTTATGATTTATTTACTTACAAATG
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC

>NZ_CP017769|7|1|3463739-3464780|CRT
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	GTATTCATCGATCAGATAGAACTTGTTAAT
GTTGTGATTACACACCAAATACGTGTACAGTACCAAC	ATTGGACTAAAGCAGAAGAATGGATTACTA
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	ATTGCAAAAGACGTAATGAATACGATTAAT
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	ATTGCAAAAGACGTAATGAATACGATTAAT
GTTGTGATTGCACACCAAATCTATGTACAGTACCAAC	AATTTAAGATCATGGAATTTAGAAACGCAA
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	CACAGCGTCACAGTTAGGCGCATTCAGAGT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	AGATACACTATAAGGACTTTACAAGAAGAT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	CATCTTTCACTGTTGGGTGGAAGTGATCGT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	AAAGAACAAGAGGTAACCTTTGTCAATAAT
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	AAAATCAAATGTTTTTGATTTGTTGTCTTC
GTTGTGATTGCACACCAAAAACGTTTACAGTACCAAC	AAAATCAAATGTTTTTGATTTGTTGTCTTC
GTTGTGATTGCACACCAAAAACGTTTACAGTACCAAC	TTATTGAAGAAAGCTGGTCTTTGGGGTAAA
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	ATACTCGCTTCAGAAGAACAATTCAAGAAG
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	GCATCATTATAATGATTCACTAAGTTTTTA
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC	GAATGCTTATGATTTATTTACTTACAAATG
GTTGTGATTGCACACCAAAAACGTGTACAGTACCAAC

>NZ_CP017769|7|1|3464006-3464313|PILER-CR
TGTTGTGATTGCACACCAAATCTATGTACAGTACCAACAA	TTTAAGATCATGGAATTTAGAAACGCA
AGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACCA	CAGCGTCACAGTTAGGCGCATTCAGAG
TGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACAG	ATACACTATAAGGACTTTACAAGAAGA
TGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACCA	TCTTTCACTGTTGGGTGGAAGTGATCG
TGTTGTGATTGCACACCAAAAACGTGTACAGTACCAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006265513.1\|3475718_3477197_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|367035
NZ_CP017769.1\|WP_071307459.1\|3471674_3475490_+\|cation-transporter	unknown	unknown	gnl\|CDD\|226220
NZ_CP017769.1\|WP_071307650.1\|3464896_3468355_-\|hypothetical-protein	cas13b	cas13b_CAS_V-B1	gnl\|CDD\|380476
NZ_CP017769.1\|WP_071307452.1\|3452113_3455530_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP017769.1\|WP_071307456.1\|3458459_3459779_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP017769.1\|WP_071307455.1\|3457501_3458368_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP017769.1\|WP_071307454.1\|3456702_3457263_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274376
NZ_CP017769.1\|WP_071307461.1\|3479038_3479626_+\|DUF3347-domain-containing-protein	unknown	unknown	gnl\|CDD\|378730
NZ_CP017769.1\|WP_071307457.1\|3461624_3463205_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP017769.1\|WP_006259945.1\|3481381_3481582_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NZ_CP017769.1\|WP_058699900.1\|3459957_3461076_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP017769.1\|WP_083387863.1\|3481581_3481881_+\|phosphatidylinositol-kinase	unknown	unknown	gnl\|CDD\|274416
NZ_CP017769.1\|WP_071307458.1\|3468368_3469049_-\|hypothetical-protein	Csx27	-	unknown
NZ_CP017769.1\|WP_006259953.1\|3470891_3471320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307453.1\|3455526_3456447_-\|FecR-family-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP017769.1\|WP_071307451.1\|3450426_3452103_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_CP017769.1\|WP_071307460.1\|3477200_3478787_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP017769.1\|WP_006261412.1\|3461159_3461582_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP017769.1\|WP_071307651.1\|3480307_3480775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307450.1\|3449167_3450406_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006265513.1\|3475718_3477197_+\|TolC-family-protein	gnl\|CDD\|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	1.39282e-12
NZ_CP017769.1\|WP_071307650.1\|3464896_3468355_-\|hypothetical-protein	gnl\|CDD\|380476	cd20478, Cas13b_Bz-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Bergeyella zoohelcum and similar Cas13b proteins. CRISPR-Cas (clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins) adaptive immune systems defend microbes against foreign nucleic acids via RNA-guided endonucleases. These systems are divided into two classes: class 1 systems utilize multiple Cas proteins and CRISPR RNA (crRNA) to form an effector complex while class 2 systems employ a large, single effector with crRNA to mediate interference. Class 2 type VI CRISPR-Cas13 systems use a single enzyme to target RNA using a programmable crRNA guide and are divided into four subtypes based on the identity of the Cas13 protein (Cas13a-d). The Cas13 proteins are capable of both pre-crRNA processing and target RNA cleavage, which protect the host from phage attacks. Once bound to a target RNA, their non-specific RNase activity is activated. Cas13b has many distinctive features compared to the other Cas13 proteins, including the lack of significant sequence similarity, disparate crRNA repeat region, and double-sided protospacer flanking sequence (PFS)-dependent target RNA cleavage.	0
NZ_CP017769.1\|WP_071307452.1\|3452113_3455530_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP017769.1\|WP_071307456.1\|3458459_3459779_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	7.65433e-35
NZ_CP017769.1\|WP_071307455.1\|3457501_3458368_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	7.07127e-18
NZ_CP017769.1\|WP_071307454.1\|3456702_3457263_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	3.38472e-34
NZ_CP017769.1\|WP_071307461.1\|3479038_3479626_+\|DUF3347-domain-containing-protein	gnl\|CDD\|378730	pfam11827, DUF3347, Protein of unknown function (DUF3347). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 169 to 570 amino acids in length.	1.17613e-45
NZ_CP017769.1\|WP_071307457.1\|3461624_3463205_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.12572e-11
NZ_CP017769.1\|WP_006259945.1\|3481381_3481582_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	6.03293e-17
NZ_CP017769.1\|WP_058699900.1\|3459957_3461076_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	7.72026e-63
NZ_CP017769.1\|WP_083387863.1\|3481581_3481881_+\|phosphatidylinositol-kinase	gnl\|CDD\|274416	TIGR03071, couple_hipA, HipA N-terminal domain. Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.	2.99775e-27
NZ_CP017769.1\|WP_071307459.1\|3471674_3475490_+\|cation-transporter	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	8.54946e-159
NZ_CP017769.1\|WP_071307453.1\|3455526_3456447_-\|FecR-family-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	2.16866e-21
NZ_CP017769.1\|WP_071307451.1\|3450426_3452103_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	3.33156e-37
NZ_CP017769.1\|WP_071307460.1\|3477200_3478787_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	3.40289e-92
NZ_CP017769.1\|WP_006261412.1\|3461159_3461582_+\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	2.94261e-32
NZ_CP017769.1\|WP_071307450.1\|3449167_3450406_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.32811e-17

>NZ_CP017769.1|WP_071307457.1|3461624_3463205_+|MFS-transporter
MYNKGLFHSWVPKPVMLLLIVIIAAVFCSISGIYTTNITNIVGSTGSMTEYYLWANYAYAIGLGTVMPLIVRIKARFRTKELLVTSLTMCGLLYLVQSTTHQPYIIIACSYLIGVFKMMGMMEVVLPLMMLLSVGGNRGIFYSIYYSALLVITQLSGYFVAKVSFIFSWQISYMNLAIMCFGAALICIIFQHNQRFMRKVPFIYIDWISILLFNVTFMTLAYILAFGKQQAWFDSEIIRYASLVFGILLFIFVIRQQLIRRPFLPLNAFKKNNVRHGTIMLLCLGMYLATATIQNIFAVGILGYNPMTNASLNLLLIPGLITAAVVCYYWYKNEIPIRMLVFSGFSAFLMYSVMMYLAMATEFSYSMWYLPMFFKGYGMGVIFVTTWYYTLDKLDLASMLGLIGFAILWRTFIAVGMFSALYSWTQYQFQIQSLNNLAVYLDDAMLLRSGSGINLSLVQLNGILAATKTVYGYINIAGIGVLLYVLFHHYGRIRTLKTRVYINKLGNLMMSKKDKESIENQLPNNI
>NZ_CP017769.1|WP_006261412.1|3461159_3461582_+|four-helix-bundle-protein
MINVYTIFLNSSNPFSMKNENIVQIKSYAFAIRMVNTYKHLTTTKKEFILSKQLLRSGTSIGANIEEAIGGQSDKDFYAKLYIAYKEARESHYWIRLLTDTDYLTTKQSTSLLTDIDELLKIIGSILKTIKEKEKIINHT
>NZ_CP017769.1|WP_058699900.1|3459957_3461076_+|HlyD-family-secretion-protein
MEKKENTTTEQPVQAPVEQVVEDKAKKEKKKKTKILLVNTLTFAVIGIAFFWLLTKYFHINDRDYTESAQVEEFINPINTRVSAYIKEIKFIEHQQVKKGDTLVILDNREILTQVEQAEAAYLSALAAKKVTNSSIHTASNNIGVFSSNIEGAKARLWNAEQNNKRYENLLQAEAVTQQQYDQVKTEYQAAKSAYESLIKQQNTTKLSVSEIETRLALNEADIKRTKAMLDMAQLNLSYTVITAPYDGVMGRRLISEGQLLSPSQQITTIVKDNEKWVTANFLESQMNNIQIGSIIDMTADAVKGIRFQGKVTAISAATGSRYSSMPTDNSTGNFVKVQQRIPVRIEFTDTNDIENIANLKAGMNMNIQLAN
>NZ_CP017769.1|WP_071307456.1|3458459_3459779_+|TolC-family-protein
MKRNIHKYFCGLSLLLLSYTSIYSQVSDQTLSIEQAVNLAMQNHQQLKVTALNKNISQQQTQLIKQQRLPNLAFTANASYIGDALILDRDFSKVMTKDMPHFGNSYAIQASELLYKGGAINKNIELAEIGEQLASLDLVQDQQSIKFLVISNYLDVYKLIHQEQVYQNNKKLAQIRLENVNRYYKEGMMTRNEVIRGELVLQNMDQALLSVDNNLSILNYNLAIALGLPTSTKITPNEALVHRPLEGDYNYYLDLAYTQHPMIQRVEKGVEAAQKKIEIANTDKYPALAAVGGYNMSRPITTSNPVMDMYSNAWQVGVSLTYNIDNLYKTPKKVKLEKLQKNKAEESLTLVQQQLEMGVNAAYTKYDEAIQNANLLKKSQQLAQENYKIIEAKYLNQLAIQAEMTDATNAKLEAELKYANAEINVLYQYYNLLKSTGTL
>NZ_CP017769.1|WP_071307455.1|3457501_3458368_+|AraC-family-transcriptional-regulator
MLQGNIETANSSFIHVQIYDQQNIFDHANFGHPYRPTRSSFLFVKKGKLRIREQINEFEIIENSIFLIDVKYVYEILEISPDAELRLLSYDRNFLETASFKLHRLKVYRDLKTQLQRNFHISKQELEIFWTNVESLGYYLEHFKEIEYGQYIIENYFNIILYHLVSVATPRSEDSINQMTSQQKITYKFVMLVSDYYLETKSVQFYADKLQLSIRHLSTVVKETSGKTPIEIINEFIFNEAKAQLSTTTLPIKQLATKLQFSDQYAFAHFFKKHQGTSPTQYRKMFKL
>NZ_CP017769.1|WP_071307454.1|3456702_3457263_-|sigma-70-family-RNA-polymerase-sigma-factor
MALSRDQWVDINYYKYWDILYYLSCNITRDKDLSADIVQDVFVNIWNNYSNLIIDNSKAYLIQSVRNKSLKAISTTSFNTVQLEEVYNVLVDNEILSREEEIMFKEQLVNMIYSKAQEVLPEKCYQIFVLRYSNKLSYKEIALKLGISESTVDNQINKALKSIKSSLPYLVDYIIVIGYLMGVTQN
>NZ_CP017769.1|WP_071307453.1|3455526_3456447_-|FecR-family-protein
MQNKFKHFLNKYLLGTANSTEKKVVEDFSDNLQRRPLIELKIIQENSKLRSSIYNSIKYKTRERKRRKNYRLLSIVFSLLLVVGLTIYQKNISVNNQELTYSTSNELAKHIILPDGTAVTLSSNSTLIVSNEFNQSNREIKLLGEAYFQVAKDASRPFIISSDNFETQVLGTSFWVKRNIVEVSTGRVKVSNLLDRENYVILTAEQKALLKDHRLYKNTIDVFSCISSTSSYLMMNNITLTQWKQIIEKEFDIQIHFLEDIISTKEFIQADFRNSTLADIVQSVSYMYGFDYKYENKTIIINNTKK
>NZ_CP017769.1|WP_071307452.1|3452113_3455530_-|TonB-dependent-receptor
MRLNYYCRLRVETYLFCLSLLSTGVYATNQTISDKVGVHVYVSNSSETVKSLFEKIEAQTAYKVVYSPSTLDTSIALRFTSKERELEKLLEDIALRTGSTYNISDKFITFKSQYVIPKGDKVNTGQQNNKTVLKGVVKDIHGLALPGATVKIKESTEAVATDLDGSFMLEVVQNKPIILVIEYIGYDTKEIKVENPEYTSIVLEEDARSLEEIVITGYTTESKRNITAAISTINVDGIKDVPKADVAEMLQGRASGVQVMSDNSPGGGNSIRIRGFSTINNNEPLVIVDGVPVANGLNSINSNDIASMQVLKDAASSSIYGSRAANGVILITTKSGGRNEKISIDVSSFTGVQSAFNLPKMLDAQQYGDMLWQAYKNDGVAPKHDIYGNDPTGATIPLYLNKDKTIKSGNVDWVKEIFNPATIQSHNISLAKGGEHSSQLFSLGYFDQQGIIKDTYFKRFSGRFNSDYRFFDGILTIGENLNASYTENVGIGTNAALGSIVYNAFMYPSIVPVYNELGEFSGNPLNDIQNPRGRLDRNKNNKTKELRLLGNLFGELKLSDFTFRSSIGLDYVNINGRNFSPKFNEILVINPVNSLSTRNSFNYQFTFTNTLSYKKQLGNHNFDVLLGQEAVEYYYEGFSASRQNFMYEDPNYWFLDYGTANQLNGGNANGWSLNSFFGKVHYNYDGKYIVSATMRRDGTSRLANHKWDTFPAVSLGWRIDREDFFDLGDTFTSFLLRGGWGVTGNQQVPSYSTIKSYSSNSYNSNYDINGGQSSVETGLIQSRVPNPELKWETTTQSSLGVDLGFFNDKLNVTADIYNKKTKDILVYKSLPLTYGGTNDGQWVNDGEMTNRGLELNLSYQDNIKDLHYNINFNFTTYKNELTALNSVNYLGIPSSSLHSVNFGQEISRSAIGQPIGSFFGYVNDGIFKSQQQIDQYKLQPNAKPGDLIFRDVNNDGVIDDNDRTFIGSPHPDFILGFNLDLKYKGFDLSMFFNGSFGNKLYNLTKYNSHFFNQSAYNKSSDVLGAWTPDNPNASIPRLSLDDTNNNIRPSSYYVEDGSYFKLNNLQLGYSFGEKIHKKLKMRVYLQATNVFTITNYSGLTPEVGLQSYSKSNKNLDIGIDRGLYPPARTFSMGLSINY
>NZ_CP017769.1|WP_071307451.1|3450426_3452103_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRYILNKTYKILFVTTIMAGVMSSCSKDFLDETTYGEVSPDKMTDPKNVERVIIGAYKMLNGQMDNASNAMNSPASNWSFGDVTSDDAYKGGGGTGDQGQIHRMELYQTDPTVIDIERKWSALYEGIKRVNDALRLLNQSVAFDPELKKQRQGELFFLRGHYYFELKKIYNRIPYIDEKVVNVEDYNRSNVEFTSEQLWQKIATDFDNASKVLPSKQAQIGRPTSIAAKAYLMKTMIYQKKWQEAYTISEEVMSSQYKLLSNFEDVFLPENDNSSEVIFAVQHSINDGDPNNYNGSIGDRLTAPGGPFYPQYGFHRPSQNLVNAFKTDANGLPVKDNVDVNSQDFVDPRLDYTIGRPGITYKDLGVTYDASWARDVATYGVYAPKKRIVSAKSPYYGATWPYVSALNYYIIRYAEVMLWKAEAAVELGKLEEARSIVNAIRNRAKESKYVMALDGKSYAANYKIGLYNDSWSDVNKAREAVQLESRLELAMEGERFFNLVRWGIADKVINQEYLEAEKHKRSFLTNAHFTKGKNEYFPIPQRYVDGATSKVEQNPNY
>NZ_CP017769.1|WP_071307450.1|3449167_3450406_-|YdcF-family-protein
MKKIVVGFLLAVCTFSFGQRGDNKSVTLLRNSNFYFLDQLSKQPSLVKLLNDNKTFTEIKHNRLDLISKLVNGETFPKSEELVHSYIFTDDQIKSISDELVALNNKEKKVETFFEELKQSKKYINYNEMNQKDFISNVVKLNFSGLNHTLKVYGLGEKPFYPNIDSVSYDKNSRYFKSAILFWAKHLANESDYSKASFFEPMLDYGLYLMYMNHRDEGIRYEPLAELYNKSAIEYVKRIDFKKYEYNALIVLGDGPENYRDPLGALGKLNLKLAVEQYRQGKAPFIIVSGGHVHPNRTETCEAIEMKKELIGLYNIPEEVIIVEPYARHTTTNLRNATRLMIEYGFDIKQKSMIVSYELHTKSIADKKFLERFMRELGYLPGKIVKQKKGELLDFYPSELLLQINPLEPLDP
>NZ_CP017769.1|WP_071307650.1|3464896_3468355_-|hypothetical-protein
MKDILTTEKQNRFYSHKIADKYFFGGYFNLASNNIYEVFEEVNKRNTFGKLAKRDNGNLKNYIIHVFKDELSISDFEKRVAIFASYFPILETVDKKSIKERNRTIDLTLSQRIRQFREMLISLVTAVDQLRNFYTHYHHSEIVIENKVLDFLNSSFVSTALHVKDKYLKTDKTKEFLKETIAAELDILIEAYKKKQIEKKNTRFKANKREDILNAIYNEAFWSFINDKDKETVVAKGADAYFEKNHHKSNDPDFALNISEKGIVYLLSFFLTNKEMDSLKANLTGFKGKVDRESGNSIKYMATQRIYSFHTYRGLKQKIRTSEEGVKETLLMQMIDELSKVPNVVYQHLSTTQQNSFIEDWNEYYKDYEDDVETDDLSRVIHPVIRKRYEDRFNYFAIRFLDEFFDFPTLRFQVHLGDYVHDRRTKQLGKVESDRIIKEKVTVFARLKDINSAKASYFHSLEEQDKEELDNKWTLFPNPSYDFPKEHTLQHQGEQKNAGKIGIYVKLRDTQYKEKAALEEARKSLNPKERSATKASKYDIITQIIEANDNVKSEKPLVFTGQPIAYLSMNDIHSMLFSLLTDNAELKKTPEEVEAKLIDQIGKQINEILSKDTDTKILKKYKDNDLKETDTDKITRDLARDKEEIEKLILEQKQRADDYNYTSSTKFNIDKSRKRKHLLFNAEKGKIGVWLANDIKRFMFKESKSKWKGYQHTELQKLFAYFDTSKSDLELILSDMVMVKDYPIELIDLVRKSRTLVDFLNKYLEARLGYIENVITRVKNSIGTPQFKTVRKECFAFLKESNYTVASLDKQIERILSMPLFIERGFMDSKPTMLEGKSYQQHKEDFADWFVHYKENSNYQNFYDTEVYEIITEDKREQAKVTKKIKQQQKNDVFTLMMVNYMLEEVLKLPSNDRLSLNELYQTKEERIVNKQVAKDTQERNKNYIWNKVVDLQLCEGLVRIDKVKLKDIGNFRKYENDSRVKEFLTYQSDIVWSAYLSNEVDSNKLYVIERQLDNYESIRSKELLKEVQEIECSVYNQVANKESLKQSGNENFKQYVLQGLLPIGMDVREMLILSTDVKFKKEEIIQLGQAGEVEQDLYSLIYIRNKFAHNQLPIKEFFDFCENNYRSISDNEYYAEYYMEIFRSIKEKYAN
>NZ_CP017769.1|WP_071307458.1|3468368_3469049_-|hypothetical-protein
MDKLSLYELFSFVIPGGIALHLLNWCSVNVLSTGTLFNLSDLSNSLIALVFALLIGVTLHIITFNILLKSGSYRQIIYKSVQEIKLDDYIQQVIPFLNQEYFHNKKHEVAANTNNAVPAENLFDYAYYYLEVNGKNAQAKNFQSLYFFFRNMFTLGIVSIVILIIALVYSTITSVGKDVLSEIVFKIAFFAVIIGIAVPVANWLRKKMIITVFGCYYADRVHQTNK
>NZ_CP017769.1|WP_006259953.1|3470891_3471320_+|hypothetical-protein
MKKHLSILFLFLSFLVTASPIIEWSCTEEVMTCGMEISNDGGMSCCGGDMEQGSRSMDMNMPCCTVASRVLVTIAELKVQTPKVVQDTKAKTANIKSQWFNSNYLEDLKSIDLVSVSPLSVSVSGFKYKDIDPLSYICIYRI
>NZ_CP017769.1|WP_071307459.1|3471674_3475490_+|cation-transporter
MLNKIIKYFLHNRVITLLLLVVVIVWGLITAPFNWHQNMLPSDPVPVDAIPDIGENQQIVATEWMGRSPKDIQEQITYPLTTSLLGIPGVKTVRSSSMFGMSFIYIIFEENVEFYWSRSRILEKLNSLPAGTLPEGVIPSLGPDATALGQVYWYTLEGRNPQTGEPTGGWDPDELRTVQDFYTKYNLSAAEGVSEVASIGGYVKEYQVEVNPDAMRAYNVSVMDVMSAIQKSNLDIGAETIEINKAEYLVRGLGYIKNVKDLEDAVVTVRNNVPVKIKDVAFVNLGPATRRGGLDKEGIEAVGGVVVARYGANPMHVISNVKAKIKEMEAGLPQKTLADGTISKVTVVPFYDRSGLIQETIGTLETALAHEILICIIVVIVLVINLRASVIISSILPIGVLATFIIMKYMGIEANIVALSGIAIAIGVMVDVGVVFVESIIRYMEEERAQGIQSKGMAFVNLITKAVSEVSGALSTAMLTTIISFLPVFAMEAQEGKLFKPLAYTKTFALLSAFILGIIVLPTIAYYVYSIKIDKQKVRKIANYILAVAGIGLWIYTGEFIAVTLTLVAINNLFTPGWKTDTIANYINVALTLFVALYYLTVEWLPLGTQQSTGLNFVFVFLAIGSILGVLWLLVIYYEQILRWALTHRWKFMSIPILTLVFGMLVWLGADKSFGFVAKGFETVGWKSFRETAFWQKSTQTFPGIGQEFMPSLNEGSFLLMPTSMPHTGIEQNLQFIGTLDRRISNIPEVELTVGKWGRVNSALDPAPTQMFENTINYRSEYILDDNGHRQRFKVNKQGEFELINGTTYNVEDGFRLIPRDSLIIDKDGKFFRQWRPEIKKADDIWQEIVNVSHLPGLTSAPKLQPIEARLVMLSTGMRAPMGLKVSGPDLESIEAGGKALEAALKDIPSIMPSTVFYDRAVGAPYVEIHLNRHNMARYGITVSDLQDVIGAAIGGMALTTTVEGRERFPVRLRYPRELRDNPEELAKMLIPTATGAQIPLSEVADIEYAKGSQMIQSENTFLLGYVIFDKIEGKAEVDVVHEADKLLQAKLASGELTLPKGVTYKFAGNYEQQERASQRLLYIVPLSLLAILLILYFQFKTIAASLIHFSGVFVAFAGGFILLWLYGQPWFMNFSVGDMNMRDLFQMHNINLSIAVWVGFIALFGLATNDGVLMGTYIHDTFEARDPKTKEEIREAVVYAGLKRVRPAAMTTATALIALLPVMTSTGKGAEIMVPMAIPTFGGMLIQSMTMFVVPVFQCWWREWAIKRSA
>NZ_CP017769.1|WP_006265513.1|3475718_3477197_+|TolC-family-protein
MNKNKTYIYLASAFLAVTSFTATAIAQQQPKDSLSSYLNVAIENNPGIKAQKFAHEAFLQKIPQAGAFQDPELSMDFYTEPMDIVGGRSIGNVSIMQMLPWFGTRKSARIEAGHMANMQNEQYKEVVDNITLQVHTQWYAMQKLNEQLRNNEENKKLLQQLEQLALRKFSAPSNTAKPSATPQVSTKTASTPSASTSAGMGGMSMGGGATASSAPAMSSSMGSGGGMSEMGSSSASGMSDVLRIGLELIEIENNIESLHSQLKAEKAKFNALLNREANHEVVLGEIEKTSFIYGEQDALLAIEANNPMLSMITEEGLAYKAKAEMDKKMSYPMIGLGLQYMVIGKTNDKMLAMGDMNGKDMIMPMVTVSLPIFRKKYKAQQEEGKLWWKSSDQKFEDTYNTLKSEYYGYKSQLDDAERIVTLYEKQTTLAETTYNLIIKEFVTGKSDLTNVIQVQRQLLDYQLKKAEAIANYNTMVASIKKLLAIRDNTQNI
>NZ_CP017769.1|WP_071307460.1|3477200_3478787_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNKIRNIFKNNIVRYSAILLVGLLLGWMVFGGAGSHQHNGEPATTEEGNTVWTCSMHPQIKMDKPGKCPLCAMDLIPLKSSDGGDDAIDDQAIQMSKEAVALANIQTTVVGHQDAVKDIQLYGTIQVDERLQQSQTSHVNGRIEKLYVNFTGEAVKQGQLIATIYSPDLLTAQQELLEAAKLKDLQPLLLDAAKEKLRIWKMSEAQISKVLSTGNVSPYVSVHANTSGIVVAKNVNQGDYISQGTVLYNISNLSKLWAVFDAYENDLPFIKEGDVLEYTLQSLPGEVFKGKIAFINPIIDATSRTAKVRVETDNRNNNLKPEMYASAKISAPLKQYNKEMVIPKSSVLWTGKRSVIYVKQPKTATPAFKLREIVLGPSLGENYVVMSGLENGEEIVTNGVFTVDASAQLEGKRSMMNNDNAPAATGHANHGNDHSTTASANLEHAMLKVKGNCDLCKERIETAAKKVKGVSTASWDVKEKVLHLNFDKKLTSKAAISKAVAKVGHDTELDKATDADYKALHSCCQFER
>NZ_CP017769.1|WP_071307461.1|3479038_3479626_+|DUF3347-domain-containing-protein
MKKVILSFAVLAFTLTACNDKKQETTAPATEEHAGHDHDDHTTASAAEKVTTVKESNVLQSTLDAYFLVKKALQEDNQAEAATASKTLVTNLNAVVTEDAKAKELVKELVETATKIDVADIKVQREEFEDLTEDLVKLINTVGTDRVVFEQYCPMYNNGEGGQWLSDVEDLSNPLYGSSMLKCGANQNKITFETK
>NZ_CP017769.1|WP_071307651.1|3480307_3480775_-|hypothetical-protein
MSTTYRHSQFWLYSLGVSYQKDSYDEYYKQTLFKSQLDKQTPKAEAKVLYQKQKYQVGVGVSFEAQKSQKAFTQEDTTFQSLYQEIYLPAFRYRTMDKNYLTLELDYIYSLKERQQIGARFTLGKLWADKSELILNDQAYKVRAHQVYMSLYFQF
>NZ_CP017769.1|WP_006259945.1|3481381_3481582_+|helix-turn-helix-transcriptional-regulator
MDSIQLFVKQKRKELKLTQEDLALNAGVGLRFVRDLEQGKKTLRLDKVNDVLALFGKEVGVIDKTR
>NZ_CP017769.1|WP_083387863.1|3481581_3481881_+|phosphatidylinositol-kinase
MRVRQTKIYFQDQLAGYLLETDNGYSFYYEKDYLKTTNPKPISLPLSEETYHSNVLFPFFDGLIPEGWLLDIGEKHWKLNPRDRSELLINLCRDTIGAV

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Crispr_ID: NZ_CP017769_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_8

3645913-3646007

Orphan

Consensus_repeat	Method
ACGGATTGCAAATCCGCGCGAACTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_8

>merge|NZ_CP017769|8|3645913-3646007|CRISPRCasFinder
ACGGATTGCAAATCCGCGCGAACTGGTATAGGTTGTTGGACATATACGATACACTTCTACATACTCTGGACGGATTGCAAATCCGCGCGAACTGG

>NZ_CP017769|8|8|3645913-3646007|CRISPRCasFinder
ACGGATTGCAAATCCGCGCGAACTGG	TATAGGTTGTTGGACATATACGATACACTTCTACATACTCTGG
ACGGATTGCAAATCCGCGCGAACTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006263952.1\|3645179_3645608_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP017769.1\|WP_006263947.1\|3639051_3639360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182940
NZ_CP017769.1\|WP_006265599.1\|3635541_3636402_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214752
NZ_CP017769.1\|WP_006258146.1\|3648100_3648985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307544.1\|3644042_3645155_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP017769.1\|WP_071307546.1\|3649221_3650052_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP017769.1\|WP_006258143.1\|3645620_3645812_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP017769.1\|WP_006258148.1\|3650362_3650680_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006261462.1\|3656545_3657175_-\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
NZ_CP017769.1\|WP_071307542.1\|3639456_3640578_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP017769.1\|WP_071307541.1\|3637986_3639036_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP017769.1\|WP_006263949.1\|3640765_3642166_-\|UDP-glucose-6-dehydrogenase	unknown	unknown	gnl\|CDD\|177986
NZ_CP017769.1\|WP_071307540.1\|3637069_3637927_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP017769.1\|WP_006263972.1\|3654316_3654820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006263970.1\|3652304_3653057_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293828
NZ_CP017769.1\|WP_071307543.1\|3642538_3643540_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307547.1\|3651307_3652246_+\|Dyp-type-peroxidase	unknown	unknown	gnl\|CDD\|367887
NZ_CP017769.1\|WP_071307545.1\|3647166_3647409_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_071307548.1\|3653128_3653959_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP017769.1\|WP_071307549.1\|3655261_3656542_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006263952.1\|3645179_3645608_+\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	3.629e-14
NZ_CP017769.1\|WP_006263947.1\|3639051_3639360_-\|hypothetical-protein	gnl\|CDD\|182940	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional.	4.68095e-20
NZ_CP017769.1\|WP_006265599.1\|3635541_3636402_-\|hypothetical-protein	gnl\|CDD\|214752	smart00635, BID_2, Bacterial Ig-like domain 2.	0.0021324
NZ_CP017769.1\|WP_071307544.1\|3644042_3645155_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.84071e-147
NZ_CP017769.1\|WP_071307546.1\|3649221_3650052_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.47032e-12
NZ_CP017769.1\|WP_006258143.1\|3645620_3645812_+\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	1.36109e-21
NZ_CP017769.1\|WP_006263970.1\|3652304_3653057_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293828	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.87316e-73
NZ_CP017769.1\|WP_071307542.1\|3639456_3640578_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	6.50482e-179
NZ_CP017769.1\|WP_071307541.1\|3637986_3639036_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP017769.1\|WP_006263949.1\|3640765_3642166_-\|UDP-glucose-6-dehydrogenase	gnl\|CDD\|177986	PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.	0
NZ_CP017769.1\|WP_071307540.1\|3637069_3637927_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.87005e-166
NZ_CP017769.1\|WP_071307547.1\|3651307_3652246_+\|Dyp-type-peroxidase	gnl\|CDD\|367887	pfam04261, Dyp_perox, Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region.	1.62505e-91
NZ_CP017769.1\|WP_006261462.1\|3656545_3657175_-\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	8.44421e-54
NZ_CP017769.1\|WP_071307548.1\|3653128_3653959_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	9.71155e-21
NZ_CP017769.1\|WP_071307549.1\|3655261_3656542_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0

>NZ_CP017769.1|WP_006258143.1|3645620_3645812_+|cold-shock-domain-containing-protein
MQEGTVKFFNETKGFGFITPNDGGQDIFVHTTGLNERVRENDAVVYEVEKGKKGLNAVNVRRA
>NZ_CP017769.1|WP_006263952.1|3645179_3645608_+|cold-shock-domain-containing-protein
MADSFSKKEKNKKKAQKRQEKALKREDRKINNNKGKDLEDMLVYVDYNGNLTDVPPEEQDIEAAKRELEERLAAASAPDTECTGVVTYFSSKGFGFITEDDSKENIFVHSSQSNQPLQQGDKVTFKKERTPRGLSAVEVNKI
>NZ_CP017769.1|WP_071307544.1|3644042_3645155_+|DEAD/DEAH-box-helicase
MNFKDLALTQEIQTALTKIGYSTATEIQQKAIPPILEGKDVIGTAQTGTGKTAAFAIPILQKLHSTPKSTKGIRALILVPTRELAIQVKDSFLDYSTELPLKTVTLFGGVPLPPQVRALKQHPEIIVATPGRLLDLINQKIVKLSNLEILVLDEADQMLDMGFIHDLKKILKFVPTKRQSLFFSATMPKEIEQFARTIVYKPVKIEVAAEVITATTIEQQVYYTEKKDKKALLHTILKENTESTLVFTRTKYEANNLVKYLQKVNMVAMAIHGNKSQSARVKALDDFKNKKINILIATDIAARGIDISKLPFVINYDIPDKPETYVHRIGRTGRAGVQGVAMCFCTPEQRKELKDIQRFTGIKMQVKQEI
>NZ_CP017769.1|WP_071307543.1|3642538_3643540_-|hypothetical-protein
MKTISWLTIVQQHNDLVRRWFICCCVLMSSLLWGQQVDEDQVSVVKLWRDLNGENSLYIKVGATCNNYDSKGIFAKNGYDSIISIELINEENKVSVNYGERLPDNQMLMFYDEGIWFEEHVDIQAVFIPVFYCRPYFGNQMPLTYIVLYNGKRYMYHFDYYCQSDILGTCSLPYSKGKLQKRLSDLPKELAKKFANYLTKVYTQREDLFPNHLIFRKEKYNNIYRPYDLATAYHASYPYVLLDKVNGYLEEKKYSLATTYLNEFEYIYVREKLTVNVAGFYVQDRTISQKATSYRSRVHAEREKLLEEAKFLTRRNQYQEAYLIYKVILEEES
>NZ_CP017769.1|WP_006263949.1|3640765_3642166_-|UDP-glucose-6-dehydrogenase
MKNIQKICCIGAGYVGGPTMAVIAQKNPHIQITVVDLNEARIQAWNDEDLSKLPIYEPGLDVVVGEARGRNLFFDTNVDKAIDEADMIFISVNTPTKTYGKGKGMAADLKYIELCARQIARVAKTDKIVVEKSTLPVRTAQAIKRILDQTGNAVEFEILSNPEFLAEGTAIQDLMNPDRVLIGGAETPRGREAIEALASIYEAWVPQERILRTNVWSSELSKLTANAFLAQRVSSINAISELCEVSGADVAEVSRAIGTDSRIGNKFLKASVGFGGSCFQKDILNLVYIAKSYGLDAVADYWEQVIIMNDHQKRRFAENIVTTLFNTVNDKKIAFLGWAFKKDTNDTRESAAIYVANELIEEEAQIHVYDPKVTEQQMLSDLDYLATREAELNKKHLTVHQDPYTALEGAHGIAVLTEWDEFKTYDWQRIYDKMQKPAFIFDGRNILNRQALEDIGFEVYTIGRGK
>NZ_CP017769.1|WP_071307542.1|3639456_3640578_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKKNLIVFGTRPEAIKMAPLIKEFKKHNDQFDTRVCVTAQHREMLDQVLEFFDIVPEYDLNLMKPNQNLYSLTGDIITGLKPVLEEFKPDYVYVHGDTTTTMSASIAAFYSGAKVCHVEAGLRTHNKRAPFPEEINRQITGRVTDYHFAPTTASQENLLRENIKIKDILVTGNTVIDALLESVERVEDLQNEEIIQLKQILDSSKKLILVTGHRRENHGDGFICICESLKEIALTHADVQIIYPVHLNPNVKGPVYEILSGIDNIQLIDPLAYPSFVWLMNKSYMIVTDSGGIQEEAPSLGKPVLVMRDTTERPEAVAAGTVILVGTDKEKIVREANSLLTDSARYAKMSALHNPYGDGKACARIVEFISQLQ
>NZ_CP017769.1|WP_006263947.1|3639051_3639360_-|hypothetical-protein
MNTQVVTIGLGYIGLPTSALIAQNKIGVHGVDISQHVVDTINAGKIHIVEPNIQDHKVFKLTNYREAVEKADIVVFLVAHNEFKTLEIPQGKVVLDFCGIKK
>NZ_CP017769.1|WP_071307541.1|3637986_3639036_-|dTDP-glucose-4,6-dehydratase
MNKILITGGAGFIGSHVVRLFVQKYPDYQIYNLDALTYAGNLENLRDIEAVPNYHFIKEDITNQEAIEQLFIKERFNAVIHLAAESHVDRSITDPLAFVRTNVLGTVNLLQAFKSLWQGDWEGNRFYHISTDEVYGALGEVGLFTETTSYDPNSPYSASKASSDHFVRAYGKTYGMPYVVSNCSNNYGPNHFPEKLIPLCIHNIINKKPLPIYGDGKYTRDWLYVLDHARAIDDVFHKGKNAETYNIGGFNEWQNIDLVKELCKQMDVVLGREVGESERLITFVTDRPGHDLRYAIDATKINKELGWSPSVTFPEGLAKTIDWYMNNQNWLTNVTSGAYQEYYHQQYKK
>NZ_CP017769.1|WP_071307540.1|3637069_3637927_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLHPLTLAVSKQLMPVYDKPMIYYPLSTLMLAGINEILIISTPTDLPNFQKLLGDGSQIGCSFTYAIQEEPNGLAQAFIIGEEFIGDDHVALILGDNIFYGSGMSKLLQSCVERAEPTIFAYSVTDPQRYGVVEFDQHKNVLSIEEKPLEPKSNFVVPGLYFYDNDVVNIAKTIQPSKRGEYEITDINKEYFRQGKLKVGILDRGTAWLDTGTFASLMKAGQFVQVIEERQGLKIGAIEEVAYRMGYITKEQLHHIAKPLCKSGYGEYLMTIE
>NZ_CP017769.1|WP_006265599.1|3635541_3636402_-|hypothetical-protein
MINDSFDLINELKIENATKEQVVWLSENPSVVRLNGSIAKALSEGETKITAKVKNTNVQASMKIRVQEQILQFKQKELSLVTNKTFNLNYLLEIKNIEQNQLKWTVENPNILTINKGQITTSREGRSKVTMDNPIIKVDREGYIKTFFGQTGVTNVTLRSRQNPHVSITMRVEVVSFINDVLVSSHIFDEIIIDGTHTGELQYQLFSPRREGISIQDFVLYDGYNRVIFRDSKTYALEQIYSIKLNKVYKPYAEFTLMYKDIAIRCRKEVNVVTGIPIPKAPPSGN
>NZ_CP017769.1|WP_071307545.1|3647166_3647409_-|hypothetical-protein
MKKLRQINFLFVVLALLLVNCSRSKKLNGTDYDQLYAVWYSDDYRDSLAETLKPSVKKVLSLKNTPDNRVFIDSVLNQLR
>NZ_CP017769.1|WP_006258146.1|3648100_3648985_-|hypothetical-protein
MNKNLQKYITLDQSYFFDIDEVYCGAEIIVQRLINYDLYQRLHSEECKNYTQQELCDYYEKAIQTEQVVLDKGGYIIDNSFFHGEFCVGEFGLLDGECKLRSKVNGSIFDLTFVKGVAVEGSVKEEDIVTSRFSLEDRIFTVEGFESGKLVSKQVIHFDLELDYNTIFYSYYEDESVESIEDNINQAHKVYYRNGNIQKIKDVLNERTQFFDNRGVLTEEFFIEKGYRCSLTYQDGVLTDKTCIGEEDKYFYFYKEGKLDFYEVLDKATDTISVYKSSGELVQQDSLIQLGFTS
>NZ_CP017769.1|WP_071307546.1|3649221_3650052_+|IS5-family-transposase
MYQVLHKDSIELDIVPHLPLPKRGFKSKAPLYEIVSTILYKLKTGIQWSYLIVQALFSTQILSHKTVFGHFRNWCKAGVWQSCWTELLKKNKSLIDLSSGDLDGSHTTALRGGEQVAYQGRKKRKTTNSLYFTDRQGLPLAMSEPIAGNHNDLFDIEIYFEDITDQLTKAEIPLSGLFINADAGFDSQKLRKIFSDKEIIANICPNKRNGQNNEDDYFDEQLYKERYAIERTNAWIDSFRSLLNRFDTTLSSWMAWNFMAFIVIELKKFQKTKKSR
>NZ_CP017769.1|WP_006258148.1|3650362_3650680_-|hypothetical-protein
MEIVLWVIVSLVFLGSLVMFVPSLMSLASPRAKELKGMYYWNSIVSKTFCVLVMLYPLVFLIAVLFYFFLQSPVLSWLVSYAILVVLLFAMWNRLDKKVNGGKKN
>NZ_CP017769.1|WP_071307547.1|3651307_3652246_+|Dyp-type-peroxidase
MSQKAQNVTDYPNNNTIFSVWKFKEEAEIKQAFEALCGLVNNLNNSFKVRVNAGPTSCILGVSHNAWLKLDLPTPMPKELKVFEEIKGDKHTAVSTDADLHLHLSAINPAICYDMAMAISKVLLPVADCIDEVQGFKYWDGRAIIGFVDGTENPIGEDRDYFGIVGNEDPQYKGGSYLFVQKYIHFMKDWDNLSTEEQEKVIGRYKATDIEMEEDKKPANSHTALTAIEDEDGNELKIIRANMPYANPSKGQAGTYFISYASTFSTTEKMLKNMFIGEPAGNYDRLLDFSKAISGTLFFVPSLDILDDYSAE
>NZ_CP017769.1|WP_006263970.1|3652304_3653057_-|MBL-fold-metallo-hydrolase
MINVYHLNAVEINAPTGDRAIGHCTVLEIENKLVLIDAGIGMQDNDPVQSRFSPELVTAVGLRLDPSMAIYEQLKQRGLDPRKVTDVVVSHLDCDHISGIVDFPNASIHVGSEEYHNYQSDNPRYVKTLLLHQPIIIQYRTTVEQWRGLEVRRVQIEGVELYLTPLFGHTLGHCGIIYQVEEKWYFYIGDAYYLREELSNSNHPVHQLTEARADNNRLRLESLERIKEFISQYPEVVVYGYHDIKEFLEV
>NZ_CP017769.1|WP_071307548.1|3653128_3653959_-|AraC-family-transcriptional-regulator
MNVKYCLPQKELRSIVSRFWHGEVDLKEGKGLYRIIASGNTGIIIQLFQNQSVLYNKENQKALPKSFIYGQKSDSPCLNYFAHKATVLGVDLHPTAFKKIFGLHATELTNTLADAEDLLPSEVCRQLYESTSTQEAIKILENHFLRYAITSSNQEIEYSIQKLNKTCELANTTSLAEEVNMSRRSFQRKFKEVVGIDAYTYSRIMRFQKALHFMQNSEATSLTQVAYKVGYADQSHFGREFRVFVGDSPKAFLQNSYFMDTPQIDISIPFRIIGLE
>NZ_CP017769.1|WP_006263972.1|3654316_3654820_-|hypothetical-protein
MKQIILLFASMILLLFACKKSAGSHGFTIYGESDYYKDGVYCAEVMYENPYTNSSSTYQVSVEVKDGNLVHINWPSEGWLDDVNFSTQNITDGQCSFMSERGYRYTITLGGLGAECYDDSEELQNRVNEDTAQATCPECGEMRAIQEKHCVYYANRVILENNWDRHF
>NZ_CP017769.1|WP_071307549.1|3655261_3656542_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MKNRQDNLIERDYAVNWHPYTQMKTAQNIIPITKGEGSYLYDANGKRYIDAVSSWWVTLHGHSHPYIAQKLTEQLTTLEQVIFAGFTHQPAIELSERLLGLLPSSQTKVFYTDNGSTAIEVALKMAIQANYNKGGKKNKVFAFKNGYHGDTFGAMSVSGRGIWTDPFGDMLFEVLFIEVPTAENLESIKKTIDTYAEETICFIYEPLVQGAGGMLMHKAEHLSALMSHCKEREILLIQDEIFVGFGRTGKLFAANHLSESPDIMCFSKGLTGGTLPLGITTCTEELYQAFYADDKTKALFHGHSFTASPLACTAALASMDLLLSKDTQDHINRIVEKHKGFIQQLKQHPKVQDARQCGTIFAMEWKTTECTSYFSDMHDMLYPFFLDRGVLMRPLGNIIYLVPPYCTTDEDLEYIYNCILEALEMI
>NZ_CP017769.1|WP_006261462.1|3656545_3657175_-|dethiobiotin-synthase
MTQPLKLFVTGIDTGIGKTVTSAILTHYFKADYWKPIQSGDLHESDSMKIQQWNENVTIYRERFRLQLPASPHESAVKENVDIQLSDFTLPDTANNLIVEGAGGLFVPINSSTYMIDLIQYLKLPVALVTKNYLGCINHTMLSIEALRTRNIPIDYLVLNGEFNPYSLKAIKNFIDRDTQLIHIPTLEEITKEAVMLTALELASVSLQE

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Crispr_ID: NZ_CP017769_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017769_9

3744711-3744842

Orphan

Consensus_repeat	Method
TTGTGTGCCAACAGAATGTGACACGCAAAATATTGACGTCTCTACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017769_9

>merge|NZ_CP017769|9|3744711-3744842|CRISPRCasFinder
TTGTGTGCCAACAGAATGTGACACGCAAAATATTGACGTCTCTACTGCGTTGGCGCGGATTTGCAATCTGTGCCGTGTACATAACGTTGTGTGCCAACAGAATGTGATACGCAAAATATTGACGTCTCTACT

>NZ_CP017769|9|9|3744711-3744842|CRISPRCasFinder
TTGTGTGCCAACAGAATGTGACACGCAAAATATTGACGTCTCTACT	GCGTTGGCGCGGATTTGCAATCTGTGCCGTGTACATAACG
TTGTGTGCCAACAGAATGTGATACGCAAAATATTGACGTCTCTACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017769.1\|WP_006265653.1\|3737362_3738256_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|131350
NZ_CP017769.1\|WP_006265658.1\|3741339_3742248_-\|drug/metabolite-DMT-transporter-permease	unknown	unknown	gnl\|CDD\|183277
NZ_CP017769.1\|WP_006265664.1\|3748214_3751064_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265655.1\|3739163_3740024_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP017769.1\|WP_006261552.1\|3756460_3756916_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265663.1\|3746988_3747498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265657.1\|3740779_3741262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265662.1\|3746193_3746955_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP017769.1\|WP_071307580.1\|3733974_3734493_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP017769.1\|WP_156860104.1\|3740194_3740767_-\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NZ_CP017769.1\|WP_051009435.1\|3736475_3736850_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265660.1\|3744979_3745708_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP017769.1\|WP_006264050.1\|3753661_3755098_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182502
NZ_CP017769.1\|WP_006265659.1\|3742496_3744626_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP017769.1\|WP_006265661.1\|3745781_3746093_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP017769.1\|WP_006258246.1\|3736925_3737234_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238702
NZ_CP017769.1\|WP_006265665.1\|3751850_3752789_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319246
NZ_CP017769.1\|WP_006265667.1\|3755658_3756333_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017769.1\|WP_006265666.1\|3753168_3753654_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP017769.1\|WP_006265654.1\|3738311_3739064_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017769.1\|WP_006265653.1\|3737362_3738256_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|131350	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.	1.19948e-19
NZ_CP017769.1\|WP_006265661.1\|3745781_3746093_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.77507e-25
NZ_CP017769.1\|WP_006265655.1\|3739163_3740024_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	3.3167e-42
NZ_CP017769.1\|WP_006265662.1\|3746193_3746955_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	5.99869e-13
NZ_CP017769.1\|WP_071307580.1\|3733974_3734493_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	0.000180602
NZ_CP017769.1\|WP_156860104.1\|3740194_3740767_-\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	0.000432544
NZ_CP017769.1\|WP_006265660.1\|3744979_3745708_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	9.76587e-08
NZ_CP017769.1\|WP_006264050.1\|3753661_3755098_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	1.18495e-139
NZ_CP017769.1\|WP_006265659.1\|3742496_3744626_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.36898e-64
NZ_CP017769.1\|WP_006265658.1\|3741339_3742248_-\|drug/metabolite-DMT-transporter-permease	gnl\|CDD\|183277	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG.	2.29296e-143
NZ_CP017769.1\|WP_006258246.1\|3736925_3737234_-\|hypothetical-protein	gnl\|CDD\|238702	cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.	0.00345367
NZ_CP017769.1\|WP_006265665.1\|3751850_3752789_-\|hypothetical-protein	gnl\|CDD\|319246	cd16387, ParB_N_Srx, ParB N-terminal domain and sulfiredoxin protein-related families. The ParB N-terminal domain/Sulfiredoxin (Srx) superfamily contains proteins with diverse activities. Many of the families are involved in segregation and competition between plasmids and chromosomes. Several families share similar activities with the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system. Also within this superfamily is sulfiredoxin (Srx; reactivator of oxidatively inactivated 2-cys peroxiredoxins), RepB N-terminal domain (plasmid segregation replication protein B like protein), nucleoid occlusion protein, KorB N-terminal domain partition protein of low copy number plasmid RK2, irbB (immunoglobulin-binding regulator that activates eib genes), N-terminal domain of sopB protein (promotes proper partitioning of F1 plasmid), fertility inhibition factors OSA and FiwA,DNA sulfur modification protein DndB, and a ParB-like toxin domain. Other activities includes a StrR (regulator in the streptomycin biosynthetic gene cluster), and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators sbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ). Nuclease activity has also been reported in Arabidopsis Srx.	1.05926e-05
NZ_CP017769.1\|WP_006265666.1\|3753168_3753654_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.65348e-23

>NZ_CP017769.1|WP_006265659.1|3742496_3744626_+|TonB-dependent-receptor
MKHLFLIASVCCYAPLFAQSNDTITNQKINEVVITTTQQQKGYSSKIPLTYIENPQSADIILHQTMKNQVTTNIKDVLQNATGLVRVWESTGVGVTGGEYYTMRGFAFQPNLLNGMPSFTNSTLDIANIEQVEVVKGPNGTLYGGNVISYGGLINVITKKPYEQLGGEVNYIGGSNNLNRVSLDINTPIHKKLFIRLNTAYHKQHTFQDAGYKESFFVAPSIQYNINEKLKLYVDFQYKINEGAHAPMFFISRYMPVSFESLDLFEANYKKAYTSNELTLKNLTFTAQAKLEYKINDHWTSNTIINKNNTQSKGYDILFEDIGTTDDFVRYISKIDSKTNIFSIQQNITGKYNIGSLDNTILFGLDYLSKEFSSIDGDYIEHGIISLINQSDTGDLSKTAIDNALSTSNYIHNKAKTQTFSSYVSNVTNILPNFSFMASLRFDYLEGSTSAVNNQKTSQTTLSPKFGLVYQPIQNKLALFANYLNGFVFLDPAIISDPDGTNKTIQPFDPEQANQFEIGVKTNLLGDKLSATISYYHIKVTNKLMTDLNSLNSFTQGGKVKSEGIELSLTGTPLLGWDIITGFSHNYNAVTKSLPSDGNLGLRPEEAGPANLFHLWTNYKLQSGAFRNVSFGIGINSVSEQKAINRSTLGVLTLPSYTIYNAAIGYDWKKFNAILKIDNLTNKKHFTGNATVNPQGLRTVSLSLNYKIF
>NZ_CP017769.1|WP_006265658.1|3741339_3742248_-|drug/metabolite-DMT-transporter-permease
MTKHVKATIIGFCAILLWSSIVGLIKEVSYSFGSTGGAAMIYTVASVFLLCTTKWVPLSKFPRRYLVYGAILMVAYELCLALSIGYSTSSKQAIEIGMVNYLWPTFTMIATVLFTSKKANWLIIPGVVASLIGIIWVLGGEEGFNLSEMLVNIKANPLSYGLAFLGAILWSAYCVVTVRSANGVNGITFFFMLVALVLWMKYFIMEEQVEMLFTLSSIVYLLLAAFAMGFGYAAWNVGILEGNVTILTGASYFIPVLSSALSSVLLATPLGISFWQGTVMVCIGSILCWFSTKKVETISGEK
>NZ_CP017769.1|WP_006265657.1|3740779_3741262_-|hypothetical-protein
MEKESKVNVVLFDKAVELLSKEHELIKWPLTKTAEGNFIKNFGEEIGVFFIRHSYRSGWRFGINTFDQVFHLHKENFKVHNREIYKQGYYIIGTGLHEDLIVLNLNTATVGYVSSEAFYRGEAEVDINVLFKDTGLDMGTFYYRSITEKDSFYRCAEDVR
>NZ_CP017769.1|WP_156860104.1|3740194_3740767_-|SMI1/KNR4-family-protein
MRLFEIEEVSVFLEKKFADVDKDIISELLLIPYKGSKEEVLRLKEYLNITILPEEFEDFIMRYNLGNLTLANIQFGSGGNYINRLINLNNKDNYWYQDCLSIDAMVVGLGDPYTILLSLKEGVVYVVSSEISFDDKVIVAPSFDSFIQGLGTSVYVKESGKEESFLSLIENEFGVNTRFFGKKYFIKAFT
>NZ_CP017769.1|WP_006265655.1|3739163_3740024_-|alpha/beta-hydrolase
MINIKALLVTGMLLLGVSGISQTNSKPLTFGTTDQLHSTILSEDRTINIVLPPDYNANDTIKYPVVYILDGGVEEDFIHLAGLVRFNSLPWIARFPNSIIVGIETINRRKDMTFAVDNLNFVEKAGFSKDMFPEYGRAEAYTAFLESELIPYIEKNYKGSSTRTVIGESLAGLYSTYVLEYHPYLFTNYIIISPSLWWGDEKLLDKTHTCLIEKIKQPVNVYVGVPNKEEDVKMYEYGKQLYKTLQKNKNIKSHFDYLPQEIHSTVIHQAVNNAFQKLYPSTYFSK
>NZ_CP017769.1|WP_006265654.1|3738311_3739064_-|hypothetical-protein
MMRYCFLVLFVLVASGNSMAQSYDKVYIEKKDVDVNNTIYKVGRTFYYSYKIQNKEGDSLFIDAKDAENLTSVKDEALPDQFKMEVIAPEKGKRTNKRQTEIRYSFEPMTDFRSSTGLVENEQNVWLHPIRSHFFKALETAPFPYVHLGKSVGYTWSDQMIIGDSWSNPVWGEWKGKLLLDYTYRIEKQEMVSTALGDLSCLKVVSTAKSTLGETELVSYFSEQYGFVKMEYKLLTGLKIVIDLVKVDGF
>NZ_CP017769.1|WP_006265653.1|3737362_3738256_-|AraC-family-transcriptional-regulator
MSNADQIHDYTIKDILRLLDQEYQDSGIYVDVQTSFTDNPLKHPYRNENYTLLFVTQGMITVQVNLIEYRLEPGTITIIPPQMVILFKEFSQDINFIAISFDRAFAIENTHTQNEKSTFVLLTPNTVTKLMLNQEQQTSLLSLCTLLNHKNTQKGKSANQKEAIKHLFALFLLELVDASHYNYKELKSNLSRKESLTIQFLELLQLHFKSEKLVRFYADRLCVSESYLAKVIKEITAKTIGELIDDAVIVEAQLLLTNSTLSISEIAESLHFNTTSFFGKFFKRKVGCSPREYRKRI
>NZ_CP017769.1|WP_006258246.1|3736925_3737234_-|hypothetical-protein
MSKHYITCQKCKTENVNSDYCTNCGEIINVVLRRQMEQQRVVNERIQKEVNRELTSFEKFTRRMLKHPNPFIRVPAMIVNAIWVVGVSIMAGIAYLIGFIAA
>NZ_CP017769.1|WP_051009435.1|3736475_3736850_-|hypothetical-protein
MKKTLFYIALCISVVIYVLQKSHIVLPAWVNNYVNDFLTLPLALSICQYILRKLKKQADLLLPLSLILFVALYYSVYFEWYLPQQNPRYTGDWLDCVMYFSGAGVFYLLNNTVLFRFREENRYK
>NZ_CP017769.1|WP_071307580.1|3733974_3734493_-|DinB-family-protein
MSSVEKSFRDFEKVSKVWKKALETYSEVEISKNGSADHWSLGQIYLHLINSTLYFHGKQIECCVKAKNNCNKRKNFKGFMVYTILGKFPPVKIKVPASDEYTPITPVSKKEIELGLQKVDEMMCVWKELLKNDLGGKTPHPGFDYLNASEWFRLIPMHWAHHLRQKSDRDNE
>NZ_CP017769.1|WP_006265660.1|3744979_3745708_-|CPBP-family-intramembrane-metalloprotease
MTIVILEALMQVGVLLPFMILFMKDRSKKDFMRIGIFCFVFVLYSCALMLVQISESFRIINGSWNWSGKVYGIIWGVVCYFAFRSYFKGHNFFTLKQSPGSQKGVWLATVGIILSAVVAWWFAGSGGEWNIETLAFQLTMPGIDEEIMFRGVLMGLLLSSLRMKVRYLGNPSNLIIAVLFGFVHAFTLSEEYIVSFDTVYFIQTAFAGYIYGWIAIKSRSVLFPILAHNGSNFFGTLTMMIK
>NZ_CP017769.1|WP_006265661.1|3745781_3746093_-|helix-turn-helix-transcriptional-regulator
MNYDEFESCPLNVFLKLLSGKWKPLLMYQFFANGDIRFTELWRNMPRVSKKVLLEQLKEMEVSGMVKRTQINTFPPEVFYGLTEYGKSMLPLIQHIEEWVKSN
>NZ_CP017769.1|WP_006265662.1|3746193_3746955_+|MBL-fold-metallo-hydrolase
MKVQLIRNATININVNNKNILVDPMLGSKGVLGPFPWTDDTRANPLTELPFTEAELNALIHKTDAVLLTHLHPDHWDPTAQTLLPKDMLIYCQNEDIEPIKTLGFHNVIGITDSTIFEGIHIHRTVAIHGEGEIGHLMGNASGFVLIHNQEIVYLMGDTIWCKEVKQAIDHYQPTGIVINGGAAKFGIGEHVTMNSTDIKTLLDYYPIKQVAIVHLEAISPLQENRNMLKAYFEEHNLSSRVIIPNDADIFTV
>NZ_CP017769.1|WP_006265663.1|3746988_3747498_-|hypothetical-protein
MSLRSEIAPQMKVAEERYPIVLKAVLGYTDFCDEYGDEDFIEYKRVEGELHQLTRKDMSRYDLWEYWEGEGAEVLSFRIALPDPLVVKDISREEITEIVTILKVFDVPEETEDTTFEQQFKWYLDEYYDAFLKLNCAKYSYKLFMRNKNKQGEYFEYSIEETVNELMKK
>NZ_CP017769.1|WP_006265664.1|3748214_3751064_-|hypothetical-protein
MSKDIFYTELEEFVRKGNTRRLLLLLKETPLEERLKYTKKISKLGKYYQEYVPEVGNRNSYGYRGNSEQRSAVSVAVLACCTYKDFTGIWIISEEEFKQVLDWYVPDWLGDYINDSAREGWVRAPFNEIGYLYESYKKGVFKIPLTEATWATVMVNASKVELFDQYPELLEKEFWYLFDHEVNINYHSWDEVIATLIEQGRLDKQRIVQTVIQGALTHTNQALCGWNVNLLSKLSLADHEILSFQEDIFQLLNSPLSKVVNEALDILFKIAKDKAFHVEAFVNSLPILMSSIVKATINKAMRIVAVLDKAHPTYKEASAVAIVGALHIQDQAMQTKIAKQIVKYAQPNEELAVQLEAYQEMMMSETKTLFSGYMSVQESATLAEALEEGEAELVPIQAIATVEDLIFHCSAWKTLESDYAFEQTIDAIIRLQGELKAEHIDQLLPAFDKVFKTFKDLWSTSTIQNAMAFWLLEWARMLIADPTIETTALDKLYHKYAKAELYTNSGITLGEVKLEASNRFSYYYAALRPYLTVYYYSLQLVKEKRIFPILSLPTHEPFYIDSRVLVDRLVAYQKEGELVDAVDLQIALARIDKNTEEAGLTLAQQQLKGQLLAIFEFYLGNGEVKEESADYYDVWRLAAALKYPHQPLESLTNEHYTKEQQEYCAGWLGNWEVIEESHTYKDWDHKTKTQIDKVYTHKKLKFEQIPYDINLSLIFSHINKAMPKTEVGDRMCSANLMGLIMYQIRDTKVNLSESLLAINPRQLDPIYLAVVEKCLHYGGSATFEVAEKKLLQGMFTYLLQMNNVVFSEQFYLFFGLALICDDKVTRAFVAEYWIKEALRLDQQKVGHIIGKVEAKEYVTIKRLTDSIQGFMMNVSVQHNQALQLFIESILEQLGTSPIKGLKTLLEQYGEVLHTNNAKVTNLVVKALIEDWSKVSATKKIAVTLRGQFA
>NZ_CP017769.1|WP_006265665.1|3751850_3752789_-|hypothetical-protein
MKYYWKDITDEHQQWKALELNVEGLTPPTMQLLSGSNWKMKLVCEDKPVMWGLISRDFCDIGLVRTFEEESRLIKNINSQEVEKRKELSTEERLKSWSRYFAEEMVSSDKHFFYDSIWLFEGYKDFASPPNYGTTVAAEDDFDAFTYASWDRELLYSRQVDEYSGRLKWWRKKAIEGTLPPIFAWYIPSLGGYWIIDGNYRLRAAILEKKEIPVVLAYSGEYKEAIMNPDYQRGILHSLAKSEGKPVSPQTAASMNQHLAQAFDDRPYFQQKTVARVKIKSNEEWLSEVTEYLERIDYPEREKYIKQLKDEL
>NZ_CP017769.1|WP_006265666.1|3753168_3753654_-|GNAT-family-N-acetyltransferase
MDRLYFRPLVIEDKEQLLYIYSDKDAMQYRGSKPLETIEEAENMVLQAHKEWDSRAKMRMAVIEKDTDVLIGTAMYFFESPAAVEIGFSIGRDFWKYGYGQEGTEGLMEYIKANEPEVTTIVGIARSGNEKSLKMMANIGFVEVLDYEVEGKRRFELTVNG
>NZ_CP017769.1|WP_006264050.1|3753661_3755098_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MEIGIVEDPKVKKYLPWLAALAIFMQALDGTILNTGLPSIARSLGESPLEMQSVIVSYTLTVALLIPLSGWLADRFGTRNMLMLAIGIFTLGSLFCSIANTLDQLVLARIFQAIGGSMLVPVARLILIYAYPKDQLLGIINFITIPALIGPMLGPTAGGFLVEKFSWHWIFLINLPVGIVAMVWARKVVPNFTNTVGKFDLKGWLLISGGLTTITLIIERWNSPQFTATTLILLGVLTIICVLGYIRYAQRTTKALIRLSLLKIKTLRVGLIGNLVTRFGVGGMPLMVPLLLQVGFGYSAFFAGLMMIPQAGANLVFRNFVIPIVRKFGYRNTLIVNTILTGIIISCFFFINKNTPMWILVILMICNGAFNAVQFTSMNTIALADLDNDTSSEGNTLLSVTQQLAISLGISISAMILVMFQNSSIGTNDQGIDVFRYTFLVMGIITILSSRVFARLSVEAGASLVEKREYKEPKQQTN
>NZ_CP017769.1|WP_006265667.1|3755658_3756333_-|hypothetical-protein
MSWSAEQVYTIANTTVIERLQQIEELRQGLFNIDTLEKGIRSEWTREIFFENEHHERKHIKHSLPQDGLFVINPSMSRTAYDDKDNAFYASYAEYKKNKWQFLEHIEIVPMVLSLNLTLEQCKLLAFLQQLNEETKQPFVYYKCEMWGGDIDEEIAVVFDGEMKVYYFDELAEEYKQMIGAEIKELEDTTVLQKGLETIGLVLPTHFFALHETSFDWYPYQVRH
>NZ_CP017769.1|WP_006261552.1|3756460_3756916_+|hypothetical-protein
MVQSQYSSRIIKLLLILLIIALVLFTLFYFMADDAQSGHVGFKSHYGFVGGVTLGLVLFVFSFSLTMTMVKDITIQENDILVRNLIGSKKKFYKPNTVCVLAHTKRVFLGATEYIVLQEGEKSTKIFEFSYKNFEEIKQHLNIDVEGKRRE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017769_7	7.8\|3464245\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464245-3464274	30	NZ_CP017769.1	727064-727093	0	1.0
NZ_CP017769_7	7.19\|3464247\|27\|NZ_CP017769\|PILER-CR	3464247-3464273	27	NZ_CP017769.1	727066-727092	0	1.0

1. spacer 7.8|3464245|30|NZ_CP017769|CRISPRCasFinder,CRT matches to position: 727064-727093, mismatch: 0, identity: 1.0

catctttcactgttgggtggaagtgatcgt	CRISPR spacer
catctttcactgttgggtggaagtgatcgt	Protospacer
******************************

2. spacer 7.19|3464247|27|NZ_CP017769|PILER-CR matches to position: 727066-727092, mismatch: 0, identity: 1.0

tctttcactgttgggtggaagtgatcg	CRISPR spacer
tctttcactgttgggtggaagtgatcg	Protospacer
***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017769_7	7.3\|3463910\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3463910-3463939	30	MN694372	Marine virus AFVG_250M1157, complete genome	38766-38795	7	0.767
NZ_CP017769_7	7.4\|3463977\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3463977-3464006	30	MN694372	Marine virus AFVG_250M1157, complete genome	38766-38795	7	0.767
NZ_CP017769_7	7.14\|3464647\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464647-3464676	30	NZ_CP026602	Clostridiaceae bacterium 14S0207 plasmid unnamed2, complete sequence	21216-21245	7	0.767
NZ_CP017769_7	7.14\|3464647\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464647-3464676	30	MN694448	Marine virus AFVG_250M777, complete genome	39539-39568	7	0.767
NZ_CP017769_7	7.15\|3464714\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464714-3464743	30	MN855975	Siphoviridae sp. isolate 45, complete genome	5906-5935	7	0.767
NZ_CP017769_7	7.15\|3464714\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464714-3464743	30	MN694483	Marine virus AFVG_250M1031, complete genome	14193-14222	7	0.767
NZ_CP017769_7	7.1\|3463776\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3463776-3463805	30	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	73466-73495	8	0.733
NZ_CP017769_7	7.10\|3464379\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464379-3464408	30	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	191387-191416	8	0.733
NZ_CP017769_7	7.10\|3464379\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464379-3464408	30	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	107576-107605	8	0.733
NZ_CP017769_7	7.10\|3464379\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464379-3464408	30	HM144387	Bacillus phage W.Ph., complete genome	16871-16900	8	0.733
NZ_CP017769_7	7.11\|3464446\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464446-3464475	30	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	191387-191416	8	0.733
NZ_CP017769_7	7.11\|3464446\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464446-3464475	30	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	107576-107605	8	0.733
NZ_CP017769_7	7.11\|3464446\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464446-3464475	30	HM144387	Bacillus phage W.Ph., complete genome	16871-16900	8	0.733
NZ_CP017769_7	7.12\|3464513\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464513-3464542	30	NC_021496	Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence	10686-10715	8	0.733
NZ_CP017769_7	7.15\|3464714\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464714-3464743	30	MW149095	Microvirus sp. isolate gila33, complete genome	1837-1866	8	0.733
NZ_CP017769_7	7.15\|3464714\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464714-3464743	30	MN693014	Marine virus AFVG_117M46, complete genome	19681-19710	8	0.733
NZ_CP017769_7	7.15\|3464714\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464714-3464743	30	MN694411	Marine virus AFVG_250M1188, complete genome	34979-35008	8	0.733
NZ_CP017769_7	7.15\|3464714\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464714-3464743	30	MN693004	Marine virus AFVG_117M22, complete genome	34948-34977	8	0.733
NZ_CP017769_7	7.7\|3464178\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464178-3464207	30	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	341669-341698	9	0.7
NZ_CP017769_7	7.7\|3464178\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464178-3464207	30	MK327931	Escherichia phage vB_EcoM_G17, complete genome	18020-18049	9	0.7
NZ_CP017769_7	7.7\|3464178\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464178-3464207	30	MK327931	Escherichia phage vB_EcoM_G17, complete genome	368169-368198	9	0.7
NZ_CP017769_7	7.7\|3464178\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464178-3464207	30	MH494197	Escherichia phage CMSTMSU, complete genome	130811-130840	9	0.7
NZ_CP017769_7	7.10\|3464379\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464379-3464408	30	MG945888	UNVERIFIED: Microviridae sp. isolate 1275-1602, partial genome	1227-1256	9	0.7
NZ_CP017769_7	7.11\|3464446\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464446-3464475	30	MG945888	UNVERIFIED: Microviridae sp. isolate 1275-1602, partial genome	1227-1256	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MN966730	Vibrio phage Cilsick, complete genome	57054-57083	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT460516	Vibrio phage Quinn, complete genome	56933-56962	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT460515	Vibrio phage Cody, complete genome	56502-56531	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT448616	Vibrio phage BBMuffin, complete genome	57461-57490	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MK907780	Vibrio phage Pontus, complete genome	57542-57571	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MN966732	Vibrio phage Chester, complete genome	57060-57089	9	0.7
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT460514	Vibrio phage AG74, complete genome	55875-55904	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MK796244	Vibrio phage Achelous, complete genome	55913-55942	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT460518	Vibrio phage Direpillow8, complete genome	57805-57834	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MN966731	Vibrio phage Chazly21, complete genome	57198-57227	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MK895508	Vibrio phage Brizo, complete genome	52566-52595	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MN958086	Vibrio phage Bennett, complete genome	56450-56479	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT460517	Vibrio phage Athena, complete genome	56457-56486	10	0.667
NZ_CP017769_7	7.13\|3464580\|30\|NZ_CP017769\|CRISPRCasFinder,CRT	3464580-3464609	30	MT459144	Vibrio phage Dax, complete genome	57042-57071	10	0.667

1. spacer 7.3|3463910|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN694372 (Marine virus AFVG_250M1157, complete genome) position: , mismatch: 7, identity: 0.767

attgcaaaagacgtaatgaatacgattaat	CRISPR spacer
gttattaaagacgtaacgaatactattaaa	Protospacer
.**.. **********.****** *****

2. spacer 7.4|3463977|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN694372 (Marine virus AFVG_250M1157, complete genome) position: , mismatch: 7, identity: 0.767

attgcaaaagacgtaatgaatacgattaat	CRISPR spacer
gttattaaagacgtaacgaatactattaaa	Protospacer
.**.. **********.****** *****

3. spacer 7.14|3464647|30|NZ_CP017769|CRISPRCasFinder,CRT matches to NZ_CP026602 (Clostridiaceae bacterium 14S0207 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gcat-cattataatgattcactaagttttta	CRISPR spacer
-tataaattctaatgatacactaagttttac	Protospacer
 .**  *** ******* ***********

4. spacer 7.14|3464647|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN694448 (Marine virus AFVG_250M777, complete genome) position: , mismatch: 7, identity: 0.767

gcatcattataatgattcactaagttttta	CRISPR spacer
ccaagagaataatgattcattaagtttttg	Protospacer
 **  *  ***********.*********.

5. spacer 7.15|3464714|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN855975 (Siphoviridae sp. isolate 45, complete genome) position: , mismatch: 7, identity: 0.767

gaatgcttatgatttatttacttacaaatg	CRISPR spacer
acatgcttttgatttatttatttacaacat	Protospacer
. ****** ***********.******

6. spacer 7.15|3464714|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN694483 (Marine virus AFVG_250M1031, complete genome) position: , mismatch: 7, identity: 0.767

gaatgcttatgatttatttact-----tacaaatg	CRISPR spacer
aaatgcttatgatttatttgcttctcctac-----	Protospacer
.******************.**     ***

7. spacer 7.1|3463776|30|NZ_CP017769|CRISPRCasFinder,CRT matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gtattcatcgatcagatagaacttgttaat	CRISPR spacer
tgattcaacgatcagatggaacttggccac	Protospacer
  ***** *********.******* . *.

8. spacer 7.10|3464379|30|NZ_CP017769|CRISPRCasFinder,CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 8, identity: 0.733

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
aaaatcaaaagtttttggtttgtacacaaa	Protospacer
********* *******.*****   *

9. spacer 7.10|3464379|30|NZ_CP017769|CRISPRCasFinder,CRT matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 8, identity: 0.733

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
aaaatcaaaagtttttggtttgtacacaaa	Protospacer
********* *******.*****   *

10. spacer 7.10|3464379|30|NZ_CP017769|CRISPRCasFinder,CRT matches to HM144387 (Bacillus phage W.Ph., complete genome) position: , mismatch: 8, identity: 0.733

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
tgctacaaatgtttttgatgtgttggctac	Protospacer
 .   ************** ***** ** *

11. spacer 7.11|3464446|30|NZ_CP017769|CRISPRCasFinder,CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 8, identity: 0.733

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
aaaatcaaaagtttttggtttgtacacaaa	Protospacer
********* *******.*****   *

12. spacer 7.11|3464446|30|NZ_CP017769|CRISPRCasFinder,CRT matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 8, identity: 0.733

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
aaaatcaaaagtttttggtttgtacacaaa	Protospacer
********* *******.*****   *

13. spacer 7.11|3464446|30|NZ_CP017769|CRISPRCasFinder,CRT matches to HM144387 (Bacillus phage W.Ph., complete genome) position: , mismatch: 8, identity: 0.733

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
tgctacaaatgtttttgatgtgttggctac	Protospacer
 .   ************** ***** ** *

14. spacer 7.12|3464513|30|NZ_CP017769|CRISPRCasFinder,CRT matches to NC_021496 (Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence) position: , mismatch: 8, identity: 0.733

ttattgaagaaagctggtctttggggtaaa	CRISPR spacer
ttacttaagaaagctggtctttgaagactt	Protospacer
***.* *****************..*

15. spacer 7.15|3464714|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MW149095 (Microvirus sp. isolate gila33, complete genome) position: , mismatch: 8, identity: 0.733

gaatgcttatgatttatttacttacaaatg	CRISPR spacer
ggtgatttatgagttatttatttacaaata	Protospacer
*.  ..****** *******.********.

16. spacer 7.15|3464714|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN693014 (Marine virus AFVG_117M46, complete genome) position: , mismatch: 8, identity: 0.733

gaatgcttatgatttatttact-----tacaaatg	CRISPR spacer
taatgcttatgatttattaactagacctat-----	Protospacer
 ***************** ***     **.

17. spacer 7.15|3464714|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN694411 (Marine virus AFVG_250M1188, complete genome) position: , mismatch: 8, identity: 0.733

gaatgcttatgatttatttacttacaaatg	CRISPR spacer
tcctggttatggtttatttacttacagctc	Protospacer
   ** *****.**************. *

18. spacer 7.15|3464714|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN693004 (Marine virus AFVG_117M22, complete genome) position: , mismatch: 8, identity: 0.733

gaatgcttatgatttatttacttacaaatg	CRISPR spacer
tcctggttatggtttatttacttacagctc	Protospacer
   ** *****.**************. *

19. spacer 7.7|3464178|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 9, identity: 0.7

agatacactataaggactttacaagaagat	CRISPR spacer
cgatacactatcaggacttttcaacgccgc	Protospacer
 ********** ******** *** .  ..

20. spacer 7.7|3464178|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 9, identity: 0.7

agatacactataaggactttacaagaagat	CRISPR spacer
cgatacactatcaggacttttcaacgccgc	Protospacer
 ********** ******** *** .  ..

21. spacer 7.7|3464178|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 9, identity: 0.7

agatacactataaggactttacaagaagat	CRISPR spacer
cgatacactatcaggacttttcaacgccgc	Protospacer
 ********** ******** *** .  ..

22. spacer 7.7|3464178|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 9, identity: 0.7

agatacactataaggactttacaagaagat	CRISPR spacer
cgatacactatcaggacttttcaacgccgc	Protospacer
 ********** ******** *** .  ..

23. spacer 7.10|3464379|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MG945888 (UNVERIFIED: Microviridae sp. isolate 1275-1602, partial genome) position: , mismatch: 9, identity: 0.7

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
gcagcttcatgtttttgatttggtgtctta	Protospacer
. *...  ************** ******

24. spacer 7.11|3464446|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MG945888 (UNVERIFIED: Microviridae sp. isolate 1275-1602, partial genome) position: , mismatch: 9, identity: 0.7

aaaatcaaatgtttttgatttgttgtcttc	CRISPR spacer
gcagcttcatgtttttgatttggtgtctta	Protospacer
. *...  ************** ******

25. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN966730 (Vibrio phage Cilsick, complete genome) position: , mismatch: 9, identity: 0.7

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaattcaagaaa	Protospacer
...  ...*********************.

26. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 9, identity: 0.7

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaattcaagaaa	Protospacer
...  ...*********************.

27. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT460515 (Vibrio phage Cody, complete genome) position: , mismatch: 9, identity: 0.7

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaattcaagaaa	Protospacer
...  ...*********************.

28. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT448616 (Vibrio phage BBMuffin, complete genome) position: , mismatch: 9, identity: 0.7

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaattcaagaaa	Protospacer
...  ...*********************.

29. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MK907780 (Vibrio phage Pontus, complete genome) position: , mismatch: 9, identity: 0.7

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaattcaagaaa	Protospacer
...  ...*********************.

30. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN966732 (Vibrio phage Chester, complete genome) position: , mismatch: 9, identity: 0.7

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaattcaagaaa	Protospacer
...  ...*********************.

31. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT460514 (Vibrio phage AG74, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

32. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MK796244 (Vibrio phage Achelous, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

33. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT460518 (Vibrio phage Direpillow8, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

34. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN966731 (Vibrio phage Chazly21, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

35. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MK895508 (Vibrio phage Brizo, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

36. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MN958086 (Vibrio phage Bennett, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

37. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT460517 (Vibrio phage Athena, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

38. spacer 7.13|3464580|30|NZ_CP017769|CRISPRCasFinder,CRT matches to MT459144 (Vibrio phage Dax, complete genome) position: , mismatch: 10, identity: 0.667

atactcgcttcagaagaacaattcaagaag	CRISPR spacer
gcggatatttcagaagaacaatttaagaaa	Protospacer
...  ...***************.*****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

993322 : 1003064

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071306978.1\|993322_996469_-	AAA family ATPase	A0A068EQC7	Bacillus_phage	1.3e-08	24.2
WP_016650245.1\|996580_997186_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.6e-62	58.5
WP_006259880.1\|997350_998781_-	pyruvate kinase	NA	NA	NA	NA
WP_006259881.1\|998785_999274_-	IPExxxVDY family protein	NA	NA	NA	NA
WP_006262392.1\|999371_1000118_-	ribonuclease III	M1HR51	Paramecium_bursaria_Chlorella_virus	3.8e-18	32.9
WP_006259883.1\|1000133_1001456_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_002988156.1\|1001588_1001825_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.8e-06	38.1
WP_006259885.1\|1002021_1002582_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.8e-18	33.1
WP_006259886.1\|1002590_1003064_+	ribonuclease HI	A0A2I7QI15	Vibrio_phage	3.1e-26	45.0

DBSCAN-SWA_2

3271543 : 3336556

Leptospira_phage(28.57%)

integrase,protease,transposase

attL 3274624:3274639|attR 3342395:3342410

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006263651.1\|3271543_3272227_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_071307395.1\|3272216_3272906_-	hypothetical protein	NA	NA	NA	NA
WP_006265373.1\|3273088_3273643_-	lipocalin	A0A1W6JNX6	Morganella_phage	2.4e-38	45.7
WP_071307396.1\|3273858_3274857_+	OmpA family protein	NA	NA	NA	NA
3274624:3274639	attL	NA	NA	NA	NA
WP_006265375.1\|3275033_3275798_-	hypothetical protein	NA	NA	NA	NA
WP_006260145.1\|3276152_3276971_-	GLPGLI family protein	NA	NA	NA	NA
WP_006261303.1\|3277187_3277976_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_006265376.1\|3277994_3278525_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_041895342.1\|3278627_3279002_+	transcriptional regulator	NA	NA	NA	NA
WP_071307648.1\|3279006_3279255_-	hypothetical protein	NA	NA	NA	NA
WP_071307397.1\|3279437_3280460_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_006260139.1\|3280539_3281406_-	hypothetical protein	NA	NA	NA	NA
WP_006261307.1\|3281431_3283420_-	TonB-dependent receptor	NA	NA	NA	NA
WP_006265377.1\|3283425_3284322_-	hypothetical protein	NA	NA	NA	NA
WP_006260135.1\|3284748_3285078_-	hypothetical protein	NA	NA	NA	NA
WP_006265378.1\|3285562_3286090_+	hypothetical protein	NA	NA	NA	NA
WP_006265379.1\|3286178_3287978_-	WG repeat-containing protein	NA	NA	NA	NA
WP_058699602.1\|3287974_3289321_-	hypothetical protein	NA	NA	NA	NA
WP_006265381.1\|3289444_3290461_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_071307398.1\|3290599_3291316_+	hypothetical protein	NA	NA	NA	NA
WP_006265382.1\|3291474_3292242_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_006265383.1\|3292482_3293700_-	tetracycline resistance MFS efflux pump	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	22.0
WP_071307399.1\|3293765_3294638_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_071307400.1\|3294744_3295095_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071307401.1\|3295182_3295698_+	hypothetical protein	NA	NA	NA	NA
WP_071307649.1\|3295924_3297334_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_071307402.1\|3297495_3298785_-	serine hydroxymethyltransferase	G9I092	Helicoverpa_zea_nudivirus	7.0e-89	46.7
WP_006263679.1\|3299057_3300011_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_071307403.1\|3300125_3301562_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_006260115.1\|3301827_3302223_-	hypothetical protein	NA	NA	NA	NA
WP_039329634.1\|3302206_3302494_-	hypothetical protein	NA	NA	NA	NA
WP_059050924.1\|3302493_3303507_-	cytochrome c	NA	NA	NA	NA
WP_059050922.1\|3303512_3305648_-	cytochrome oxidase subunit I	NA	NA	NA	NA
WP_071306833.1\|3305885_3306614_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.5e-24	29.9
WP_071306834.1\|3306632_3308186_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_059050920.1\|3308659_3312397_-	hypothetical protein	NA	NA	NA	NA
WP_006258245.1\|3312983_3313271_+	hypothetical protein	NA	NA	NA	NA
WP_071307249.1\|3313270_3313609_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_071307250.1\|3313658_3315233_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.4e-62	33.8
WP_071307404.1\|3315580_3316078_+	hypothetical protein	NA	NA	NA	NA
WP_071307405.1\|3316221_3316563_+	hypothetical protein	NA	NA	NA	NA
WP_071307406.1\|3316770_3317463_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_156860098.1\|3317500_3317725_-	hypothetical protein	NA	NA	NA	NA
WP_071307407.1\|3318256_3319627_-	hypothetical protein	NA	NA	NA	NA
WP_071307408.1\|3319676_3320366_-	hypothetical protein	NA	NA	NA	NA
WP_071307409.1\|3320589_3320805_-	hypothetical protein	NA	NA	NA	NA
WP_071307410.1\|3320807_3321947_-	hypothetical protein	NA	NA	NA	NA
WP_071307411.1\|3322281_3322629_-	hypothetical protein	NA	NA	NA	NA
WP_071307412.1\|3322747_3323560_-	hypothetical protein	NA	NA	NA	NA
WP_071307413.1\|3323913_3324549_-	hypothetical protein	NA	NA	NA	NA
WP_071307414.1\|3324536_3326024_-	penicillin-binding protein	NA	NA	NA	NA
WP_071307416.1\|3326914_3327202_+	hypothetical protein	NA	NA	NA	NA
WP_071307249.1\|3327201_3327540_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_071307417.1\|3327589_3329164_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.6e-63	33.3
WP_071307418.1\|3329888_3330437_-	hypothetical protein	NA	NA	NA	NA
WP_071307419.1\|3330829_3332533_+	hypothetical protein	NA	NA	NA	NA
WP_071307420.1\|3332817_3333225_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071307421.1\|3333520_3334732_+	hypothetical protein	NA	NA	NA	NA
WP_071307422.1\|3334871_3335126_+	DNA-binding protein	NA	NA	NA	NA
WP_071307423.1\|3335236_3336556_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	5.8e-30	31.0
3342395:3342410	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017769

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection