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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017888 Bacillus coagulans strain BC-HY1 chromosome, complete genome 13 crisprs casR,cas3,DEDDh,csa3,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,RT 0 13 13 0

Results visualization

1. NZ_CP017888
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_1 38507-38598 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_2 225812-226090 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_3 253690-253782 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_4 398418-398523 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_5 1449275-1449760 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_6 1585495-1585680 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_7 1605988-1606134 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_8 1615852-1615952 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_9 1940629-1940735 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_10 2141582-2144899 TypeI-B II-B
50 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_11 3305876-3306273 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_12 3459893-3459984 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017888_13 3558771-3558851 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017888_4 4.1|398454|34|NZ_CP017888|CRISPRCasFinder 398454-398487 34 MF417876 Uncultured Caudovirales phage clone 3F_6, partial genome 31253-31286 5 0.853
NZ_CP017888_4 4.1|398454|34|NZ_CP017888|CRISPRCasFinder 398454-398487 34 MF417941 Uncultured Caudovirales phage clone 7F_14, partial genome 1320-1353 5 0.853
NZ_CP017888_4 4.1|398454|34|NZ_CP017888|CRISPRCasFinder 398454-398487 34 MF417869 Uncultured Caudovirales phage clone 3S_4, partial genome 13244-13277 5 0.853
NZ_CP017888_4 4.1|398454|34|NZ_CP017888|CRISPRCasFinder 398454-398487 34 MF417877 Uncultured Caudovirales phage clone 9F_7, partial genome 12111-12144 5 0.853
NZ_CP017888_4 4.1|398454|34|NZ_CP017888|CRISPRCasFinder 398454-398487 34 MF417859 Uncultured Caudovirales phage clone 8F_6, partial genome 4727-4760 5 0.853
NZ_CP017888_4 4.1|398454|34|NZ_CP017888|CRISPRCasFinder 398454-398487 34 MF417878 Uncultured Caudovirales phage clone 8S_7, partial genome 10606-10639 5 0.853
NZ_CP017888_2 2.4|225987|33|NZ_CP017888|CRT 225987-226019 33 NC_012520 Rhodococcus opacus B4 plasmid pROB01, complete sequence 239385-239417 6 0.818
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57355-57409 6 0.891
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64784-64838 7 0.873
NZ_CP017888_2 2.5|226039|33|NZ_CP017888|CRT 226039-226071 33 NZ_CP032692 Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence 4611-4643 8 0.758
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 255881-255935 8 0.855
NZ_CP017888_6 6.2|1585570|32|NZ_CP017888|CRISPRCasFinder 1585570-1585601 32 NZ_CP009363 Yersinia frederiksenii Y225 plasmid unnsmrf, complete sequence 49814-49845 9 0.719
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10428-10482 9 0.836
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70775-70829 9 0.836
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 832-886 9 0.836
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75819-75873 9 0.836
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1329-1383 9 0.836
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1971-2025 9 0.836
NZ_CP017888_10 10.47|2144638|34|NZ_CP017888|CRISPRCasFinder,CRT 2144638-2144671 34 NZ_LR134437 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 28 15446-15479 9 0.735
NZ_CP017888_10 10.97|2144640|34|NZ_CP017888|PILER-CR 2144640-2144673 34 NZ_LR134437 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 28 15446-15479 9 0.735
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NC_048753 Lactobacillus phage 3-521, complete genome 13549-13603 10 0.818
NZ_CP017888_10 10.6|2141942|36|NZ_CP017888|CRISPRCasFinder,CRT 2141942-2141977 36 MN657082 Psychrobacter sp. strain ANT_H3 plasmid pA3H2, complete sequence 2892-2927 10 0.722
NZ_CP017888_10 10.45|2144507|35|NZ_CP017888|CRISPRCasFinder,CRT 2144507-2144541 35 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 822867-822901 10 0.714
NZ_CP017888_10 10.56|2141944|36|NZ_CP017888|PILER-CR 2141944-2141979 36 MN657082 Psychrobacter sp. strain ANT_H3 plasmid pA3H2, complete sequence 2892-2927 10 0.722
NZ_CP017888_10 10.95|2144509|35|NZ_CP017888|PILER-CR 2144509-2144543 35 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 822867-822901 10 0.714
NZ_CP017888_8 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder 1615875-1615929 55 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483785-483839 11 0.8
NZ_CP017888_10 10.46|2144572|36|NZ_CP017888|CRISPRCasFinder,CRT 2144572-2144607 36 HQ683709 Planktothrix phage PaV-LD, complete genome 27240-27275 12 0.667
NZ_CP017888_10 10.96|2144574|36|NZ_CP017888|PILER-CR 2144574-2144609 36 HQ683709 Planktothrix phage PaV-LD, complete genome 27240-27275 12 0.667

1. spacer 4.1|398454|34|NZ_CP017888|CRISPRCasFinder matches to MF417876 (Uncultured Caudovirales phage clone 3F_6, partial genome) position: , mismatch: 5, identity: 0.853

acggtctaagttcaacttaggtcgtcagggtgaa	CRISPR spacer
acggtctatgttcaacataggtcgtcagggcaat	Protospacer
******** ******* *************..* 

2. spacer 4.1|398454|34|NZ_CP017888|CRISPRCasFinder matches to MF417941 (Uncultured Caudovirales phage clone 7F_14, partial genome) position: , mismatch: 5, identity: 0.853

acggtctaagttcaacttaggtcgtcagggtgaa	CRISPR spacer
acggtctatgttcaacataggtcgtcagggcaat	Protospacer
******** ******* *************..* 

3. spacer 4.1|398454|34|NZ_CP017888|CRISPRCasFinder matches to MF417869 (Uncultured Caudovirales phage clone 3S_4, partial genome) position: , mismatch: 5, identity: 0.853

acggtctaagttcaacttaggtcgtcagggtgaa	CRISPR spacer
acggtctatgttcaacataggtcgtcagggcaat	Protospacer
******** ******* *************..* 

4. spacer 4.1|398454|34|NZ_CP017888|CRISPRCasFinder matches to MF417877 (Uncultured Caudovirales phage clone 9F_7, partial genome) position: , mismatch: 5, identity: 0.853

acggtctaagttcaacttaggtcgtcagggtgaa	CRISPR spacer
acggtctatgttcaacataggtcgtcagggcaat	Protospacer
******** ******* *************..* 

5. spacer 4.1|398454|34|NZ_CP017888|CRISPRCasFinder matches to MF417859 (Uncultured Caudovirales phage clone 8F_6, partial genome) position: , mismatch: 5, identity: 0.853

acggtctaagttcaacttaggtcgtcagggtgaa	CRISPR spacer
acggtctatgttcaacataggtcgtcagggcaat	Protospacer
******** ******* *************..* 

6. spacer 4.1|398454|34|NZ_CP017888|CRISPRCasFinder matches to MF417878 (Uncultured Caudovirales phage clone 8S_7, partial genome) position: , mismatch: 5, identity: 0.853

acggtctaagttcaacttaggtcgtcagggtgaa	CRISPR spacer
acggtctatgttcaacataggtcgtcagggcaat	Protospacer
******** ******* *************..* 

7. spacer 2.4|225987|33|NZ_CP017888|CRT matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 6, identity: 0.818

gatggctgccagtattctgtccttca-ccggcat	CRISPR spacer
tgcggctgccagtagtcagtccttcacccggca-	Protospacer
 ..*********** ** ******** ****** 

8. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.891

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacaacagcttggaaggctgtagttttaccactaaactacacccgcatagtaag	Protospacer
**********************.*************************  . *.*

9. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 7, identity: 0.873

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcataataat	Protospacer
***** *************** **************************  * *. 

10. spacer 2.5|226039|33|NZ_CP017888|CRT matches to NZ_CP032692 (Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence) position: , mismatch: 8, identity: 0.758

cgcagctgccagccatttgtccttcatctgccc	CRISPR spacer
gcccgctgccagccatttgtcgatcatccgtcg	Protospacer
  * *****************  *****.*.* 

11. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatattata	Protospacer
***** *************** **************************    * .

12. spacer 6.2|1585570|32|NZ_CP017888|CRISPRCasFinder matches to NZ_CP009363 (Yersinia frederiksenii Y225 plasmid unnsmrf, complete sequence) position: , mismatch: 9, identity: 0.719

ttcatgccattcaaaaagcgataacaaaagga	CRISPR spacer
tcactgcaattgaaaaagcgataacaaatatg	Protospacer
*.  *** *** **************** . .

13. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 9, identity: 0.836

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** **************************      .

14. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 9, identity: 0.836

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** **************************      .

15. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.836

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** **************************      .

16. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.836

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** **************************      .

17. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 9, identity: 0.836

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** **************************      .

18. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.836

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
catcatcagcttggaaggctgaggttttaccactaaactacacccgcattttagt	Protospacer
*. ** *************** ************************** .  ** 

19. spacer 10.47|2144638|34|NZ_CP017888|CRISPRCasFinder,CRT matches to NZ_LR134437 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 28) position: , mismatch: 9, identity: 0.735

atgtagactatgaaagagaacgtatattatatat	CRISPR spacer
ttttagactgtgaaagagaccgtatattgacagt	Protospacer
 * ******.********* ********.   .*

20. spacer 10.97|2144640|34|NZ_CP017888|PILER-CR matches to NZ_LR134437 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 28) position: , mismatch: 9, identity: 0.735

atgtagactatgaaagagaacgtatattatatat	CRISPR spacer
ttttagactgtgaaagagaccgtatattgacagt	Protospacer
 * ******.********* ********.   .*

21. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NC_048753 (Lactobacillus phage 3-521, complete genome) position: , mismatch: 10, identity: 0.818

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
catctacagcttggaaggctgtggttttaccactaaactatacccgcgtgaacta	Protospacer
*. * ***********************************.******.  **  .

22. spacer 10.6|2141942|36|NZ_CP017888|CRISPRCasFinder,CRT matches to MN657082 (Psychrobacter sp. strain ANT_H3 plasmid pA3H2, complete sequence) position: , mismatch: 10, identity: 0.722

ggatccattggaggagatgacgatggatgaacgcat	CRISPR spacer
attaaaatgagagaagatgatgatggatgaacgcat	Protospacer
.     ** .***.******.***************

23. spacer 10.45|2144507|35|NZ_CP017888|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.714

cgtaagtataagcagcgccggaaaaaccttgcgat	CRISPR spacer
acgatgggtaagcagcccccgaaaaaccttgcgga	Protospacer
   * * .******** ** *************. 

24. spacer 10.56|2141944|36|NZ_CP017888|PILER-CR matches to MN657082 (Psychrobacter sp. strain ANT_H3 plasmid pA3H2, complete sequence) position: , mismatch: 10, identity: 0.722

ggatccattggaggagatgacgatggatgaacgcat	CRISPR spacer
attaaaatgagagaagatgatgatggatgaacgcat	Protospacer
.     ** .***.******.***************

25. spacer 10.95|2144509|35|NZ_CP017888|PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.714

cgtaagtataagcagcgccggaaaaaccttgcgat	CRISPR spacer
acgatgggtaagcagcccccgaaaaaccttgcgga	Protospacer
   * * .******** ** *************. 

26. spacer 8.1|1615875|55|NZ_CP017888|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.8

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcagcaaagg	CRISPR spacer
catcatcagcttggaaggctgaggttttaccactaaactacacccgcatggttaa	Protospacer
*. ** *************** **************************  .  ..

27. spacer 10.46|2144572|36|NZ_CP017888|CRISPRCasFinder,CRT matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 12, identity: 0.667

gcaaatattcatctttgttaagtgttagatcattca	CRISPR spacer
cgaagtattcatttttgttaagtgttagcgtcccgg	Protospacer
  **.*******.***************  . .. .

28. spacer 10.96|2144574|36|NZ_CP017888|PILER-CR matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 12, identity: 0.667

gcaaatattcatctttgttaagtgttagatcattca	CRISPR spacer
cgaagtattcatttttgttaagtgttagcgtcccgg	Protospacer
  **.*******.***************  . .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 224565 : 230835 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 388996 : 439403 48 Bacillus_phage(23.08%) transposase,integrase,protease,portal attL 392103:392151|attR 411461:411509
DBSCAN-SWA_3 1349697 : 1406421 53 Moraxella_phage(33.33%) transposase,tRNA,protease,coat NA
DBSCAN-SWA_4 1747263 : 1823624 60 Tupanvirus(30.0%) transposase,coat NA
DBSCAN-SWA_5 1849620 : 1897534 42 Streptococcus_phage(28.57%) transposase,tRNA,integrase attL 1845519:1845539|attR 1889498:1889518
DBSCAN-SWA_6 2046677 : 2090232 35 Bacillus_virus(20.0%) transposase,tRNA NA
DBSCAN-SWA_7 2254257 : 2296236 32 Streptococcus_phage(27.27%) transposase,integrase attL 2267315:2267335|attR 2294231:2294251
DBSCAN-SWA_8 2418665 : 2454256 27 uncultured_Mediterranean_phage(16.67%) transposase NA
DBSCAN-SWA_9 2493231 : 2501546 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_10 2691262 : 2731883 41 Cafeteria_roenbergensis_virus(16.67%) holin,transposase,bacteriocin,tRNA,protease,coat NA
DBSCAN-SWA_11 2825672 : 2833740 10 Staphylococcus_phage(66.67%) protease NA
DBSCAN-SWA_12 3002696 : 3126587 113 Bacillus_phage(20.83%) tail,capsid,transposase,integrase,terminase,tRNA,portal attL 3038218:3038277|attR 3081572:3081670
DBSCAN-SWA_13 3425317 : 3464256 32 Enterococcus_phage(66.67%) transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage