CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP017858	Campylobacter jejuni strain YQ2210 plasmid pCJDM210S, complete sequence	0 crisprs	NA	0	0	0
NZ_CP017859	Campylobacter jejuni strain YQ2210 chromosome, complete genome	4 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	1	2	3
NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	2 crisprs	NA	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017859_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017859_1

103961-104068

Orphan

Consensus_repeat	Method
AATCATTAAAATGCTAAAACAAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017859_1

>merge|NZ_CP017859|1|103961-104068|CRISPRCasFinder
AATCATTAAAATGCTAAAACAAAGTAAGTAAATGATAATGGATGTAGAATTAACTACTAATGCTTTAGGTGATGCAAATAGTTAATCATTAAAATGCTAAAACAAAGT

>NZ_CP017859|1|1|103961-104068|CRISPRCasFinder
AATCATTAAAATGCTAAAACAAAGT	AAGTAAATGATAATGGATGTAGAATTAACTACTAATGCTTTAGGTGATGCAAATAGTT
AATCATTAAAATGCTAAAACAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017859.1\|WP_002869755.1\|109766_110969_-\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|236316
NZ_CP017859.1\|WP_002860605.1\|99927_100731_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP017859.1\|WP_002851909.1\|92255_93134_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP017859.1\|WP_052791488.1\|100723_101578_-\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP017859.1\|WP_002854625.1\|113396_114233_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP017859.1\|WP_002778650.1\|96014_96377_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP017859.1\|WP_002869754.1\|108177_108516_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|223863
NZ_CP017859.1\|WP_002914715.1\|106734_107673_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP017859.1\|WP_002854186.1\|112711_113395_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NZ_CP017859.1\|WP_002869756.1\|110980_111787_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002851705.1\|108515_109763_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP017859.1\|WP_071450828.1\|96845_98615_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|183088
NZ_CP017859.1\|WP_002778629.1\|107806_108121_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP017859.1\|WP_002859353.1\|93158_93416_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|225350
NZ_CP017859.1\|WP_071450829.1\|98601_99939_+\|McrC-family-protein	unknown	unknown	gnl\|CDD\|226718
NZ_CP017859.1\|WP_002869757.1\|111780_112719_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP017859.1\|WP_071450827.1\|93402_96018_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP017859.1\|WP_002877237.1\|101590_102481_-\|zinc-ABC-transporter-solute-binding-protein	unknown	unknown	gnl\|CDD\|238500
NZ_CP017859.1\|WP_002874652.1\|104915_106697_+\|PhoX-family-phosphatase	unknown	unknown	gnl\|CDD\|225752
NZ_CP017859.1\|WP_058001469.1\|96366_96789_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|173102

Protein	Function_ID	Function_description	E-value
NZ_CP017859.1\|WP_002869755.1\|109766_110969_-\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|236316	PRK08636, PRK08636, LL-diaminopimelate aminotransferase.	0
NZ_CP017859.1\|WP_002860605.1\|99927_100731_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.47862e-60
NZ_CP017859.1\|WP_002851909.1\|92255_93134_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	1.4482e-117
NZ_CP017859.1\|WP_052791488.1\|100723_101578_-\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	3.79434e-101
NZ_CP017859.1\|WP_002778650.1\|96014_96377_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.44796e-35
NZ_CP017859.1\|WP_002869754.1\|108177_108516_-\|YraN-family-protein	gnl\|CDD\|223863	COG0792, COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair].	4.919e-36
NZ_CP017859.1\|WP_002914715.1\|106734_107673_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	8.28288e-128
NZ_CP017859.1\|WP_002854186.1\|112711_113395_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	3.96763e-57
NZ_CP017859.1\|WP_002854625.1\|113396_114233_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.10226e-106
NZ_CP017859.1\|WP_002851705.1\|108515_109763_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP017859.1\|WP_071450828.1\|96845_98615_+\|AAA-domain-containing-protein	gnl\|CDD\|183088	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.	2.10183e-21
NZ_CP017859.1\|WP_002778629.1\|107806_108121_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.69108e-46
NZ_CP017859.1\|WP_002859353.1\|93158_93416_+\|YlxR-family-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	8.39131e-19
NZ_CP017859.1\|WP_071450829.1\|98601_99939_+\|McrC-family-protein	gnl\|CDD\|226718	COG4268, McrC, McrBC 5-methylcytosine restriction system component [Defense mechanisms].	1.4239e-160
NZ_CP017859.1\|WP_002869757.1\|111780_112719_-\|hypothetical-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	2.21013e-05
NZ_CP017859.1\|WP_071450827.1\|93402_96018_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP017859.1\|WP_002877237.1\|101590_102481_-\|zinc-ABC-transporter-solute-binding-protein	gnl\|CDD\|238500	cd01018, ZntC, Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).	5.48546e-141
NZ_CP017859.1\|WP_002874652.1\|104915_106697_+\|PhoX-family-phosphatase	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	0
NZ_CP017859.1\|WP_058001469.1\|96366_96789_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|173102	PRK14639, PRK14639, ribosome maturation factor RimP.	3.63267e-81

>NZ_CP017859.1|WP_002877237.1|101590_102481_-|zinc-ABC-transporter-solute-binding-protein
MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFFVKKIAASTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQNFSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTLIQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELLKTADAFSHNL
>NZ_CP017859.1|WP_052791488.1|100723_101578_-|metal-ABC-transporter-ATP-binding-protein
MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKSTLVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGFYEKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTASVDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEKSSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCLKFSKENNA
>NZ_CP017859.1|WP_002860605.1|99927_100731_-|metal-ABC-transporter-permease
MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGITHGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVGIILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLILLFYRQFEALSFDAEFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFIMILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR
>NZ_CP017859.1|WP_071450829.1|98601_99939_+|McrC-family-protein
MIKNNTFSIIEHQVFSKEDLEEIFKEKAEGFYKELEDFAKNNENLLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNRLIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLLWCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISKNDENCFMLKPDLYIENKMILDTKWKIPNDSENEKKQGIEQSDLYQMFAYACKFKIYDIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF
>NZ_CP017859.1|WP_071450828.1|96845_98615_+|AAA-domain-containing-protein
MLENKCDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYVYQEGKFIDEFHTKSQGDKWTSSILNYLKTMSKDGEIFYRYYKNCKFFAIPKNTFSKDDFKIIKDNINNNISLNQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKNGQIVFTTFHQSYGYEEFVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIESFNFYINDLKEKTKEDANNPEKYFQLPNTKYSIQYRGGKTFRIKFDDMSKNHKDYPVSIDNIEKLYKTSNIDEIYNSAYVKAILNYLKSQGLKDYKEKDEKINLPYIIIIDEINRGNVSKIFGELITLIEPSKRLGNEEALELTLPYSGEKFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFVEMMPNSDLLNNVFICKDVENPNEDEDYLGDDAKTEGYAEILQNILISINKRIEFLLDREKTIGHAFFMSEAVKFNKNNWIKPDEYEEDWYVLSISKLKKVFQNKIIPLLQEYFYNDYALINAVLNDNGMIFEDKKDDKYLQKIKNLDSVNSERSIYNIASFDDKIWDKIEIYQAIYDDRNKINNDKE
>NZ_CP017859.1|WP_058001469.1|96366_96789_+|ribosome-maturation-factor-RimP
MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCAKLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEKEKFEAKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW
>NZ_CP017859.1|WP_002778650.1|96014_96377_+|30S-ribosome-binding-factor-RbfA
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
>NZ_CP017859.1|WP_071450827.1|93402_96018_+|translation-initiation-factor-IF-2
MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAAAIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKKEELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVKNSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDISLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSKKIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIEILAAEFGIEINIINEADEFNYVKDYEEEIDEKDLVTRAPVITIMGHVDHGKTSLLDYIRKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVVAADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGSYEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATIIVQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIAVKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSLEALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERAKDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCMVTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVGDYIESYKEVEEQASL
>NZ_CP017859.1|WP_002859353.1|93158_93416_+|YlxR-family-protein
MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYLCQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD
>NZ_CP017859.1|WP_002851909.1|92255_93134_+|homoserine-kinase
MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGEGSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIASAYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLAAVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKLHEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKDFRVQYLEFDDNGFEIC
>NZ_CP017859.1|WP_002874652.1|104915_106697_+|PhoX-family-phosphatase
MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSASTQDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDNDDGMSFFPLSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVLDSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDFFGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNMDEANRFGWIVEINPFDAQSTPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKILDEGILYVGQFNGKVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVGATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNIYGQILKWMPKNSHKDDGFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDKDGRLWIQTDGSYSNKDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLKGSTFPYGKTPRSSVMMIRKLDGGVIGS
>NZ_CP017859.1|WP_002914715.1|106734_107673_-|thioredoxin-disulfide-reductase
MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVEVEQILKNSDGSFTIKLEGGKTELTKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH
>NZ_CP017859.1|WP_002778629.1|107806_108121_-|thioredoxin
MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELANDFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNSLL
>NZ_CP017859.1|WP_002869754.1|108177_108516_-|YraN-family-protein
MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAKKDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISLDFQIDLICIKNDVIQFCENISF
>NZ_CP017859.1|WP_002851705.1|108515_109763_-|homoserine-dehydrogenase
MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSPKKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYHRYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQKNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGISEIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISINGDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYTKYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSIQNLLEILRKQDFIKTKPFMMRIE
>NZ_CP017859.1|WP_002869755.1|109766_110969_-|LL-diaminopimelate-aminotransferase
MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPDGKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATMGSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQFFENLHKTLNESIPRPKYIVVNFPHNPTTVTCEKSFYERLITTAKKERFYIISDIAYADLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSWFDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFVWAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAARNIKKYLKE
>NZ_CP017859.1|WP_002869756.1|110980_111787_-|hypothetical-protein
MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNNSYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDAGYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEYDLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLDKNLNLIKAVKSENKNHHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK
>NZ_CP017859.1|WP_002869757.1|111780_112719_-|hypothetical-protein
MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKGFVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIVLIVLVIIGSGIYYFDTLRTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNKAQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDSLKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENKEQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW
>NZ_CP017859.1|WP_002854186.1|112711_113395_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKIKKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILCDRMLNA
>NZ_CP017859.1|WP_002854625.1|113396_114233_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLLNTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEFAQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPSIIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGEWVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQDWVKF

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Crispr_ID: NZ_CP017859_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017859_2

1003164-1003250

Orphan

Consensus_repeat	Method
TTCAAACCCATCATATTGCCATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017859_2

>merge|NZ_CP017859|2|1003164-1003250|CRISPRCasFinder
TTCAAACCCATCATATTGCCATAAGATGGGAAGGGGGAGGAAGCGATAACAAACAACCACCAATTCAAACCCATCATATTGCCACTA

>NZ_CP017859|2|2|1003164-1003250|CRISPRCasFinder
TTCAAACCCATCATATTGCCATAA	GATGGGAAGGGGGAGGAAGCGATAACAAACAACCACCAA
TTCAAACCCATCATATTGCCACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017859.1\|WP_002779716.1\|1004519_1005152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002788365.1\|1009019_1009835_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226868
NZ_CP017859.1\|WP_002779653.1\|993673_994582_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP017859.1\|WP_071451619.1\|998383_1000090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373990
NZ_CP017859.1\|WP_002789078.1\|1008491_1008935_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_071169766.1\|1009824_1012365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_058001636.1\|1000177_1000930_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP017859.1\|WP_052775889.1\|1001436_1002687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002800584.1\|989623_990109_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
NZ_CP017859.1\|WP_071451621.1\|1005295_1005706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002779655.1\|991566_991959_+\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
NZ_CP017859.1\|WP_071451618.1\|997446_998391_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP017859.1\|WP_002789082.1\|1007698_1008310_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002779724.1\|1003518_1004085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002791053.1\|1004169_1004520_+\|DUF4299-family-protein	unknown	unknown	gnl\|CDD\|339103
NZ_CP017859.1\|WP_002779732.1\|1000975_1001440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_071451617.1\|994732_997381_+\|type-VI-secretion-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP017859.1\|WP_057980905.1\|1005705_1007697_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_071451622.1\|1012380_1013184_+\|VgrG-protein	unknown	unknown	gnl\|CDD\|274542
NZ_CP017859.1\|WP_002779654.1\|991955_993677_+\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|274541

Protein	Function_ID	Function_description	E-value
NZ_CP017859.1\|WP_071451618.1\|997446_998391_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	5.30072e-10
NZ_CP017859.1\|WP_002788365.1\|1009019_1009835_+\|hypothetical-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	7.6165e-06
NZ_CP017859.1\|WP_002779653.1\|993673_994582_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	2.46712e-41
NZ_CP017859.1\|WP_071451619.1\|998383_1000090_+\|hypothetical-protein	gnl\|CDD\|373990	pfam15649, Tox-REase-7, Restriction endonuclease fold toxin 7. A predicted toxin of the restriction endonuclease fold present in bacterial polymorphic toxin systems. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 5, type 6, or type 7 secretion system.	0.000177252
NZ_CP017859.1\|WP_002791053.1\|1004169_1004520_+\|DUF4299-family-protein	gnl\|CDD\|339103	pfam14132, DUF4299, Domain of unknown function (DUF4299). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 275 and 313 amino acids in length. There are two conserved sequence motifs: RGF and DAY. There are two completely conserved residues (P and D) that may be functionally important.	7.09303e-07
NZ_CP017859.1\|WP_071451622.1\|1012380_1013184_+\|VgrG-protein	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	1.30229e-05
NZ_CP017859.1\|WP_002800584.1\|989623_990109_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	2.39108e-62
NZ_CP017859.1\|WP_071451617.1\|994732_997381_+\|type-VI-secretion-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	3.30156e-49
NZ_CP017859.1\|WP_058001636.1\|1000177_1000930_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.7165e-10
NZ_CP017859.1\|WP_002779655.1\|991566_991959_+\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	2.91054e-11
NZ_CP017859.1\|WP_002779654.1\|991955_993677_+\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|274541	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.	1.47391e-132

>NZ_CP017859.1|WP_052775889.1|1001436_1002687_+|hypothetical-protein
MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEFKQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRLCRDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPCFNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKIILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSFKEYIEEYANTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILSKQKDIDINFVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSLEEKLLYAKDEQLENILKTHKTFHG
>NZ_CP017859.1|WP_002779732.1|1000975_1001440_+|hypothetical-protein
MKNKKLLDDEYIQEVFKYYLKNDNYLKDALYGLKKYERRAFISSILSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVNLRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDFLYALKDFK
>NZ_CP017859.1|WP_058001636.1|1000177_1000930_+|ankyrin-repeat-domain-containing-protein
MNLILRAAHACEDNNNDFSILDYLFDEYGLSLKDPKYNFYHSDMKYIKEANDKYILMEEVEDTIICRNALIYDYILSADNPNSQIIKYLVNRGAKFEVHDEGAYGWTPMHFWARRNNYELLELAIKGGANVDMQTLLDPKSEYNETLLFEAVSEPETYRVTQLLIELGANVNFATPRTPLDDAKGSRNKKLLKDAGAMTSNEIRKKYNLPAYDDSHCEIDGKDDMDLLGKYRNECAKLLNDAIKKAKESE
>NZ_CP017859.1|WP_071451619.1|998383_1000090_+|hypothetical-protein
MGKGIKIDFAKVNFHIKEFQKVYILENCKLCFYSPFHLQTQNGKEVKKIEKKGKSKIYLIDEDGKTVDIDKTSEQNKIKAREEKRKKEEKSKNVLFSNDEKGNDAINAYFGEKNIDTLNKAYEEREAKPLSRNTENFKDYDIFYDVYTSKDNDIKSLNEELGYDGFEVKNGIAKVRAEFFDKCFEKGIYVLIPRLVSLDKNETLHFDPVPLEDKGFVVTDFRKGRKEEKNIDLSFQRNIAKIKNPNLTLQSPKEFLQALNENKEFTEDDKKEQAQAIKKACGKKADEITKILLKDDKSLKDIITDEKELKKKISDLQNNQNKSPKELSLLGRLEFLQRNQDKAKDYKKTIKDLQNPQQASNDKQNDKTKSRTKNKQKQTTIPNQEEQKNKNINSKDIGDAGEYAASMLFAKRSTRYLSNRRKIDANFNTHSFNHTIPDFLVTLNDYPTLVEVKNVQDQALTEQISFELKLAREYELDYLFLCNHYTKLIDNITNLEIFNKDNKNHKGSRRGFIYHRHAHRSIKTIFKEMYLHHIKGAAPNKIIIKRLNLNNSANIEEELNKNKQIQKN
>NZ_CP017859.1|WP_071451618.1|997446_998391_+|ankyrin-repeat-domain-containing-protein
MKTLEDIKAMSYQEKDELEDLVLEIIDNNDLVKLKDILKDYPVKISCYELNIKDEDGDFPLFDPFNLIIRAAHACEENNNDFSILDYLFDEYGLSLKDPKYNFAFHDMKYIKEANEKYILMEEVEDTIIYQNALIYDYILNADNPNSQIIKYLVNRGAKFEVHDEGYSGRTPMHFWARRNNYELLELAIKGGANVDMQTLLDPKSEYNETLLFEAVKEAETYRVTQLLIELGANVNFATPRTPLDDAKGSRNKKLLKDAGAMTSEQIRKKFNLPAYDSSHCEIDGKTDFDLLGKYLDEYSKLLNDAIKKAKENG
>NZ_CP017859.1|WP_071451617.1|994732_997381_+|type-VI-secretion-protein-VgrG
MSLNSYMSLNISNSTSNPLPFKITKALIKESLEELFSIECEGFFESLEQDLFSLNTLTNASSHPSTPTTFNFHPNVLIDQEAILSIHNPYENNTLNFDNNEVKNYKGIITYIKYLGINHESALNINDSTSNTKQIQYKHFFSFKLQSVLIRLSLNKANRIYTHTNIIEVIKQTLGFYQDILHKEIDYSNIHFNYEEQELISQYNESDLDFITRLSHNNGIFFYEDENTIYFCDVYKNVKNKEIEYNPNINNILNQACISSIYKEQSLRTNSFTHSSINANTPLNLLSLHSSKVPYEQELNNKACYNEHFYESEYSFTKSIDLKTKPSLKEKRALVLNENLLAKSNIYHLSLGDFITLNYKEFNHQEEIKNQDEEKQDKASLLKDFIIIANTQILIDDAILANSINTNDHLNLKDLNLNKSYSNTLTLLKKNIIFTPSFKAKPKAPNSTQGIVIGESKDIESERNTIYTDEHGRVKVRINLYANQEELDNDTFIANDIDINSSNLSSNTYKSYHHTPFLRVASHIASNHSGFFHTPRIGDEVIISFLDDDIDKPYVSGSLYNGATTMPQYNYPRYKREIATNALSYLSVVPAMIDKGLDTLKLQENTDYELSSINNHYLTLANSTVGVDNTNARARNEITLKNDKDKEEIYILAQKDYKEEIGNNYEQTIKNNKTSEVGALYTEFITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLSNTLNVGISNEVNIGQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYVLQTNQSIKFYSKQDLSIETNEYFKAEADDSISFKAKKNCSFTADNVNTMANQESVLTAQKQIVSRVGNTTITQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD
>NZ_CP017859.1|WP_002779653.1|993673_994582_+|type-VI-secretion-system-baseplate-subunit-TssG
MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKIIFSEHEQSVIELFINFMGLHGVSSQLPSFMLDKLSRNEDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIERVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTKHDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIVYMKLCE
>NZ_CP017859.1|WP_002779654.1|991955_993677_+|type-VI-secretion-system-baseplate-subunit-TssF
MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSKDPDIERIIENLAILSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNLIIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAETKICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNIEKIGLNPDESSLSYNDLGFEAFSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKPFPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQVKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMDETISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSVLSFSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKKGTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEILHYPASFGKKALI
>NZ_CP017859.1|WP_002779655.1|991566_991959_+|type-VI-secretion-system-baseplate-subunit-TssE
MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK
>NZ_CP017859.1|WP_002800584.1|989623_990109_+|type-VI-secretion-system-contractile-sheath-small-subunit
MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNETPLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDSLAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQGN
>NZ_CP017859.1|WP_002779724.1|1003518_1004085_+|hypothetical-protein
MKYYKMMYNGQHNDVDNWINCIKPDIKNNDKYALLESKPITNWQTPSFEIDKDDGKILTDLISNVYNWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYYDCKIMHVIKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPVFVSSEFRKIVRENNLLGFSFSEVMVYEN
>NZ_CP017859.1|WP_002791053.1|1004169_1004520_+|DUF4299-family-protein
MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFKKPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEERILIRAMSLEELESLELKGW
>NZ_CP017859.1|WP_002779716.1|1004519_1005152_+|hypothetical-protein
MLPQPIFLNKLIEFLSDENLDIVNMKKGVDKIFSKKDFYAILELNIKIMNIAKLIFKSDEQLNILLPQASDYKNTNYFPQELELKKEMDVNLNDLKNCDNKKIIEIIKQEYQNNLIKELDINSQKEKIKILFIINEVPKFLKSIYKECEFKEYGLANYLEFDEIWGFYENNTRYFTILTPMGANKIKLRLENTQNSEKELNIIEVNLDKK
>NZ_CP017859.1|WP_071451621.1|1005295_1005706_+|hypothetical-protein
MEIGANQNTIIHKDEIRNVKGNKKEVVEGHYGINIKETLKIQTEKETSIRSKNNLLITTNASMGFETDKNNTFVSDNSLSQTKTDYEVKAGNQILHQVGDTQIVTKGDYVIIKAGGVEVVIDSNGLVVKGGEIRTE
>NZ_CP017859.1|WP_057980905.1|1005705_1007697_+|hypothetical-protein
MEALNQKNSLNIRLLSSNNILLHNQEFKLYEIAQGNKNEIKTIFTTNRMGEAHLNASEIFSKEAQSFELILNQSSVYKNKPIYNHRFLLRSYEYGHWCEIKFERKADKGSINSIRLKSKEFTLENNEKIVRNFYTFSDIVEFEAIYEDTKIKEEQIKWGYVFIQDKNTLDKLNKNQLTNDKKESSLFDEEILKDCFYIEKEEDKALLSSSIIYRHLENNKAYCGKHLSLQLPNPKDTQEQKALLVFAYKEIPNYNASYLIRINDYPQITIDCTLAETLRAHTNKDETSRLGWGVSYICQRLWHDNPSDAKELKDLTFRSSTSQDFIDTIPNETMKTIVKEILPRVEMQQLKTDNTKSRDKARFYAELDWDSFYTKFPIMQELKGEYMNLKKLFGEESDFQKQFEDFLNDTLLDIKNIKNTQEYTMALNIQAMKENKTKNAEVFKLYKKEETLAETHKAIKDLQKPSDIIDNSLYFQRFDIKNDVFLPHLGLSKFDAFSLQNSIQHEKEVLDKFHSNPKYKQNFALYSIAGAFNILYIPSLIQITRVTRFYNYHSLYAACKKVRAFIIDTVNFNNNGSDQPIGAWDYEKVGFDLYNSIMQYRNTKFHFKYTSPKSFLFPLYNSDFLKTKQYFNLGLDFFLYSSTFLDMDFSHTQMQDTAFIVGK
>NZ_CP017859.1|WP_002789082.1|1007698_1008310_+|hypothetical-protein
MFFAGGDYEPFIYGLSLIAYYFLPLYCLTLLLYKYKPQYVNLTLHIGASVLLYLAMWVIFVDTTIISLFEIFQMFLIPIILQIIHLTFILYAIIYTYFDMQKISFTKRLGRYIVSFFIGIGLLILSFVMMYAIGYYISSWCDRYYLKIDERNEAIRTITFYVLVVVFPSIITLLLSYILYKNHKSFFTKILYRILSMIGKDKP
>NZ_CP017859.1|WP_002789078.1|1008491_1008935_+|hypothetical-protein
MTDGFGFLAYVFTLPVLILGGISYVCIVFLIRFQSFCGFVCSKSFWIAWLFSYYLLFLIICITCEWELLIMYICGISLPLVYFLRKFFMQSHSNLALNEFSLWIIPMSIFSLCIHSSLCVAIAWMLIFFQTNYDTQTLQSWLRFLFI
>NZ_CP017859.1|WP_002788365.1|1009019_1009835_+|hypothetical-protein
MQKFLIVLGLCLMLAISANAQSPKEAKPSFDCAKASTKVEKMICNDKSGELQKLDRLYSKLYFSILKSIPKDTKEGQETKKQMQKFAKNFIDYRDNMRCFLLAKNDDEKEVEEVFNKGRENGIMYENLDSVHFGFKPHHYKPCIARVYKMGILLLSTNTIIDTSFLIDKDTFYTCKGNMILDIFSIKGLVKFRFYNKLFPQGYKETIIEASKALQELSSNGRYTQVCVFEDEGFICTNGGCEFDLDEMQTRVIQPLDNFIQNIDFRKLNAN
>NZ_CP017859.1|WP_071169766.1|1009824_1012365_+|hypothetical-protein
MPIKTTNLSYEEFYNKLFSLLRLVEGIRTKIYADSADDPKITIGIGFNIDEDKWRNVILMYKAGILQYTDLENGVYTLANILGKQSQSMQILINTTSKEIKDKINEYKASNKIQKNTYQTGKNPNQNMINLQKDINAILQNNIKIYNQNPENINQKLDENIVFKLTDNEAIEVKNIISFSEIRALRHKLNKWNANYLTSFSKTELTNPQEFIPLLSIYYQRPARFNPESGLILLQKALKDKNRFLAWFSVRYYADIRQFKNPYYSRRIQEAAMFGLSNKNQNNNIEYFSTSLDIFSYLNFNFREANAKQGLKLSDKYTYLSFMQTYKKCKEVDEKAEYLLREYSTYHTKDKHYYSYVAKEEFQGIADILSPYLSYLNTLTQKNFSLDNIYCIANYCENLGANKLDNVALLNKTLRQKFEKLEANTPHNILILYPNPTPSIIQIEQPKNTFITLLIGAKAKIDCTKLIEDQCELMYLKYDPTQEEQQAINPQAFSCSTQEELILKKENEIYFKAVKNNISYFINKNDGILKVALTGNEENAIELYSFAKENQFKILQDKASKMLKIYLKLERYSSEEILLHRGGNFELTLNNLKILDKNGNNHETITKIFLHNCENRRIYESLKLEYQEGIYKSSFKIDLILDENSSFFKRATKCIIATKTLEGFSTSQMHKIGNVAIVSLSSADKKGGSYTFTNKVSMQDFGENLYLDTEANGYEKQIKNSRENLYITNLKAYKEKEQQNTTDKIPYNETIFIRAYLNNEEKFFFDETIKWAYCIKKEEELECNQSKIKILENLQGNDITFNTSMLSQDDRNKLYNMNEKYQLILFAYFSAPAFKTTQGITHLVLK
>NZ_CP017859.1|WP_071451622.1|1012380_1013184_+|VgrG-protein
MQNKAIELTLSNIKDKEQIYLKAQKDYDELVQHNFTQRILNDKDSIVDGIYNERIKKVHTQTIDLAKNVNVGGEYLTNVGLSKDTIVGLSNTLNVGVDNKVRVSKNSSEYVGENKDIEIGANQNTIIHKDEIRNVKEIGANQNTIIHKDEIRNVKGNKKEVVEGHYDINISDKMQVLSEKEMDYKSKDNILFTSNESIGFESDKNTSMVADNITTIHELKADSEATIQVGETIINAKPDCVIIKAGGVEVIIDSNGLVVKGGELKAE

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Crispr_ID: NZ_CP017859_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017859_3

1553130-1553242

Orphan

Consensus_repeat	Method
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP017859_3

>merge|NZ_CP017859|3|1553130-1553242|CRISPRCasFinder
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAATTCAAATAAGTGATTAAAAGAATGTTTGGTTTTAAATTATTTAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA

>NZ_CP017859|3|3|1553130-1553242|CRISPRCasFinder
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA	TTCAAATAAGTGATTAAAAGAATGTTTGGTTTTAAATTATT
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017859.1\|WP_002873046.1\|1548922_1549474_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_154021534.1\|1565151_1565847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350338
NZ_CP017859.1\|WP_002851457.1\|1544513_1545281_+\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|224457
NZ_CP017859.1\|WP_002860673.1\|1548580_1548922_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP017859.1\|WP_071451636.1\|1560321_1560657_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NZ_CP017859.1\|WP_002871959.1\|1569267_1571634_-\|paralysed-flagellum-protein	unknown	unknown	gnl\|CDD\|185387
NZ_CP017859.1\|WP_002860674.1\|1547902_1548481_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP017859.1\|WP_002851335.1\|1543562_1544372_+\|solute-binding-protein	unknown	unknown	gnl\|CDD\|225544
NZ_CP017859.1\|WP_002781069.1\|1563293_1563716_+\|low-molecular-weight-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|319973
NZ_CP017859.1\|WP_002884274.1\|1545290_1546031_+\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|224960
NZ_CP017859.1\|WP_052775262.1\|1549476_1550553_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP017859.1\|WP_100221722.1\|1559750_1560152_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP017859.1\|WP_002869215.1\|1546973_1547870_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP017859.1\|WP_002778517.1\|1562979_1563297_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP017859.1\|WP_002858255.1\|1546011_1546977_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_CP017859.1\|WP_052773674.1\|1556087_1557323_+\|type-I-restriction-endonuclease	unknown	unknown	gnl\|CDD\|341207
NZ_CP017859.1\|WP_139865207.1\|1554208_1556086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_070306810.1\|1550684_1552994_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226581
NZ_CP017859.1\|WP_071451637.1\|1562016_1562970_+\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP017859.1\|WP_070300725.1\|1557383_1558454_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718

Protein	Function_ID	Function_description	E-value
NZ_CP017859.1\|WP_002851457.1\|1544513_1545281_+\|LamB/YcsF-family-protein	gnl\|CDD\|224457	COG1540, COG1540, Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only].	2.19492e-154
NZ_CP017859.1\|WP_002860674.1\|1547902_1548481_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	9.90329e-52
NZ_CP017859.1\|WP_071451636.1\|1560321_1560657_-\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.51593e-32
NZ_CP017859.1\|WP_002871959.1\|1569267_1571634_-\|paralysed-flagellum-protein	gnl\|CDD\|185387	PRK15490, PRK15490, Vi polysaccharide biosynthesis glycosyltransferase TviE.	0.0030321
NZ_CP017859.1\|WP_052773674.1\|1556087_1557323_+\|type-I-restriction-endonuclease	gnl\|CDD\|341207	cd17526, RMtype1_S_Cje2232P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Campylobacter jejuni RM 2232 S subunit (S.Cje2232P) TRD2-CR2 and Shewanella baltica OS223 S subunit (S.Sba223ORF389P) TRD1-CR1. The recognition sequences of Campylobacter jejuni RM 2232 S subunit (S.Cje2232P) and Shewanella baltica OS223 S subunit (S.Sba223ORF389P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. Also included in this subfamily is the C-terminal TRD-CR-like sequence-recognition domain of Microcystis aeruginosa putative type I N6-adenine DNA methyltransferase M subunit (M.Mae7806ORF3969P). The recognition sequence of M.Mae7806ORF3969P is undetermined.	2.22489e-85
NZ_CP017859.1\|WP_002851335.1\|1543562_1544372_+\|solute-binding-protein	gnl\|CDD\|225544	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism].	2.9396e-147
NZ_CP017859.1\|WP_002781069.1\|1563293_1563716_+\|low-molecular-weight-phosphatase-family-protein	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	8.10025e-34
NZ_CP017859.1\|WP_002884274.1\|1545290_1546031_+\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.34617e-105
NZ_CP017859.1\|WP_052775262.1\|1549476_1550553_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.23538e-164
NZ_CP017859.1\|WP_100221722.1\|1559750_1560152_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.97015e-17
NZ_CP017859.1\|WP_002869215.1\|1546973_1547870_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	9.81329e-10
NZ_CP017859.1\|WP_002778517.1\|1562979_1563297_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.37356e-14
NZ_CP017859.1\|WP_002858255.1\|1546011_1546977_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.02709e-149
NZ_CP017859.1\|WP_154021534.1\|1565151_1565847_+\|hypothetical-protein	gnl\|CDD\|350338	cd12913, PDC1_MCP_like, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains. Members of this subfamily display varying domain architectures but all contain double PDC (PhoQ/DcuS/CitA) sensor domains. This model represents the first PDC domain of Methyl-accepting chemotaxis proteins (MCPs), Histidine kinases (HKs), and other similar domains. Many members contain both HAMP (HK, Adenylyl cyclase, MCP, and Phosphatase) and MCP domains, which are signalling domains that interact with protein partners to relay a signal. MCPs are part of a transmembrane protein complex that controls bacterial chemotaxis. HK receptors are part of two-component systems (TCS) in bacteria that play a critical role for sensing and adapting to environmental changes. Typically, HK receptors contain an extracellular sensing domain flanked by two transmembrane helices, an intracellular dimerization histidine phosphorylation domain (DHp), and a C-terminal kinase domain, with many variations on this theme. In the case of HKs, signals detected by the sensor domain are transmitted through DHp to the kinase domain, resulting in the phosphorylation of a conserved histidine residue in DHp; phosphotransfer to a conserved aspartate in its cognate response regulator (RR) follows, which leads to the activation of genes for downstream cellular responses.	3.52619e-16
NZ_CP017859.1\|WP_002860673.1\|1548580_1548922_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.11521e-37
NZ_CP017859.1\|WP_070306810.1\|1550684_1552994_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.37342e-119
NZ_CP017859.1\|WP_071451637.1\|1562016_1562970_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	8.30431e-55
NZ_CP017859.1\|WP_070300725.1\|1557383_1558454_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.72978e-46

>NZ_CP017859.1|WP_070306810.1|1550684_1552994_+|DEAD/DEAH-box-helicase
MQNLYSEDDTRVKFIDAKLYNSSWYEENIKRNYYFTDGRKLLGGKRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKIYEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAIDKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRVSLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENIQEEQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEENIDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFYKQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCVNQAHANEVKRAIDKYKSVKRDDYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGSMVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKEHIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYYDDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAEIKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLGRYQQYGIKDFDDGLKPLIELSSLGNVRELADEFGGLEILKQSFDDLQREIYLN
>NZ_CP017859.1|WP_052775262.1|1549476_1550553_-|NAD(P)-dependent-alcohol-dehydrogenase
MQYKILENNRIASKGYAMLSKDAKFTAFEFSRHAIGDNDILIKILYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNSCGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAICVPKNAPMDKVAPLLCAGITTYSPLRFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFARNENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSAYMDLLKFGGEMAIVGLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQEIDKAYENLTSGKAKFRYVIDMRDE
>NZ_CP017859.1|WP_002873046.1|1548922_1549474_+|hypothetical-protein
MIKTIKILAFLAIFAFALSIALCFYLFFDYFIEERNIIILTLIFISMICGILLYFLSIILLSFKLKSISFALIFLGFLFCVLASFGFYQCYIEYNNFLFSQTKGKLAFYFCAFFTTLAFILGYFHFKTMAKISSWNEFLFVYKFFMVALIVSYFNAFFGFFMLGASAILLFISWYKFKTLKES
>NZ_CP017859.1|WP_002860673.1|1548580_1548922_+|helix-turn-helix-transcriptional-regulator
MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNELKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCDWEEENKKLQGK
>NZ_CP017859.1|WP_002860674.1|1547902_1548481_-|NAD(P)H-dependent-oxidoreductase
MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHIDQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHENPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGMKALPTFMCNDVVKNPQVEKYLNEYELHLKKIF
>NZ_CP017859.1|WP_002869215.1|1546973_1547870_-|DMT-family-transporter
MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFFVVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTTMIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFNILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFKFWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNALTLLGCALAIGAIYFINIYGKKA
>NZ_CP017859.1|WP_002858255.1|1546011_1546977_+|biotin-dependent-carboxyltransferase-family-protein
MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANILLGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILELDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPFNLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAESSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLLAQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI
>NZ_CP017859.1|WP_002884274.1|1545290_1546031_+|5-oxoprolinase-subunit-PxpB
MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKKGEIYGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEEFGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPRAKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKAISKDEFFEIQEQVAKKVYQKEIYEYKNH
>NZ_CP017859.1|WP_002851457.1|1544513_1545281_+|LamB/YcsF-family-protein
MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPCVMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAKGMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLRYANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKADSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI
>NZ_CP017859.1|WP_002851335.1|1543562_1544372_+|solute-binding-protein
MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKESGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIIIADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWYQQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVIATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD
>NZ_CP017859.1|WP_139865207.1|1554208_1556086_+|hypothetical-protein
MYYFLNLKLKKIASNDELEKLYSKLDITLSCEFIKDIILFFQEQNFNSWTDIILKFKDKYNGLVELALSYFYNNININQFENFIKNIDQTLYQKEISSIYLNCGEYKKSVKITQDLWSDKNLDKTILSKHTLAILQKYYDDNKEILDNDLLTKAINYLKADLDNLKLIELIQLLYCSLLFYKKIDTDIIFKLNKQLLECPINNLDQETVNCICEIYNKYITNNNIVQDTILYDKNTGQAYISKSYYNKIDPSYNYISIIDSFEFDLKLKDDNYIKYSIFFDIYCTIISQKNLPNVSKINIDNNNPLEFFREVFNNITFPIEQERKKLIWQFNNQNCYLFHLKNSLGLDYIELIPMLIEDEDINFHSNNCIPYSGSKILTFSSIVLLQHINKLDIVLQRKNIFIPKSIILEIQNKIQNIENSKNKEIYSLSSNGLSKIDNSKVKEKLEYILKLVDLKQIIDDTKYPISNFKNISIDLKQEINIFSICCINQYQLITEDRFFGYLAEEINAPQIVSNAMSLLIEEKDYIDKAILLDSKKYFYVFGEYVAYNINATCLYKNISSYNISNHDKKIIQIINKYGFLDKLKQYYKNTYEVLYPKINFPKNDYVKHNIELLLNLIEENDNAK
>NZ_CP017859.1|WP_052773674.1|1556087_1557323_+|type-I-restriction-endonuclease
MTNLPQGWEVKKLGEIGEIVTGSTPSKSNLDFYGKDYPFFKPSDFEQGYFLENAGDNLSKLGFDKARQLPPKTILVVCIGSLGKVALTRVIGSCNQQINAIIPHKNIISEYIYYYCISSKFQSILFSKAPQTTLAIFNKTEFSKLEIIYPKDIKEQERIVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENYKLPQGWEWKSLGEISNLIQNGFAASKNNEIPSGYVHLRTHNISTDGNLNFDTLIKIKREFIKEKQSFIEKNDILFNNTNSTELVGKTALVTQNYNYAFSNHLTKIKLKNQYNSKLVVFYFVLLLKNKYFEKICHQWIGQSGINIDKLKKIQIPLPPLKEQEQIAKHLDFVFEKTKALKELYTKELKDYEELKQSLLNKAFKGEL
>NZ_CP017859.1|WP_070300725.1|1557383_1558454_+|Fic-family-protein
MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSIPNPSILINALILQEAKDSSEIENIITTHDELFLSRVDENKLTRAAKEVKDYESALKKGYELLKKEQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNDIQELMGNLELYINDDSLDEFDFLVKMAIIHYQFKSIHPFYDGNGRTGRIINILYLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAAKTIETIIKIEKMMSNVGEILQNKTNFYSKDFVELLFSHPYTKIDFLIKKLDISRQSASKYLKICENLGILECIKMGRSNYYINIELLRLFRKGIF
>NZ_CP017859.1|WP_100221722.1|1559750_1560152_-|carboxymuconolactone-decarboxylase-family-protein
MNFLQVMKDTTTQENRKIKGREIQNTIFGEANITKMIESTPEDKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQSRKDLLNIIAALIPYIGYPKALNALNLLDDIKK
>NZ_CP017859.1|WP_071451636.1|1560321_1560657_-|cupin-domain-containing-protein
MQELEKAGIHGSFKGDSKFFSKNAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNTSSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE
>NZ_CP017859.1|WP_071451637.1|1562016_1562970_+|permease
MLQCSKNFLTKRILYLFVELSVLFIGISFLISIINQKYEGMFRKQLNGDKISSYFKAIFLGALTPFCSCSTIPLLKAFLEARVKLSVCLAYLFTSPLINPIIFTMLFVTFGLKLSLAYVLFLVIFIFIISLIFSKFKEEYFLKHTPKNSAPSIFTQNTKNIGKIVFKPSSCCANTQNKTNDTKINFKKLFKESIANYKKLLPYIVIAVLIGAFIHDFIPQEILQKYLSGNEILSIILAAFFGVLLYLRVETIIPIGLILLQMGISQGVIMSFLIAGAGCSLPELVLLKQMFKMKFLLLFIAIILSVAISFGMLINFI
>NZ_CP017859.1|WP_002778517.1|1562979_1563297_+|helix-turn-helix-transcriptional-regulator
MQKFLTIISAINDESRVLVLYHLLKYQELCVCDLQKLLNMGQSRLSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDNIVLEQNTCENDK
>NZ_CP017859.1|WP_002781069.1|1563293_1563716_+|low-molecular-weight-phosphatase-family-protein
MKLAFICIHNSCRSQMAEALARHKAEKMGVDIEVFSAGSDTSKGVNSQAIRLMREIYQIDMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLKDPSGSYDDEFKKIIQILDYKITALLQAIKTNSLKDFTC
>NZ_CP017859.1|WP_154021534.1|1565151_1565847_+|hypothetical-protein
MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKTSLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVGPILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTNDIFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQKNKIFAATKKKRF
>NZ_CP017859.1|WP_002871959.1|1569267_1571634_-|paralysed-flagellum-protein
MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTCQKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTSQNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNSDPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQSAINRYRGSVFTSEFILYKLRAQNKLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYTMSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSLAKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDAFAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEVFFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLIESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMHFSAYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDDENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTILTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRARALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ

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Crispr_ID: NZ_CP017859_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017859_4

1568370-1568486

Orphan

Consensus_repeat	Method
TGTAGAATTAACTACTAATGCTTTAGGTGATGAAATAGTTAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP017859_4

>merge|NZ_CP017859|4|1568370-1568486|CRISPRCasFinder
TGTAGAATTAACTACTAATGCTTTAGGTGATGAAATAGTTAAAATGCTAAAACAAAGTAAGTAAATGATAATGGATGTAGAATTAACTACTAATGCTTTAGGTGATGCAAATAGTTA

>NZ_CP017859|4|4|1568370-1568486|CRISPRCasFinder
TGTAGAATTAACTACTAATGCTTTAGGTGATGAAATAGTTAA	AATGCTAAAACAAAGTAAGTAAATGATAATGGA
TGTAGAATTAACTACTAATGCTTTAGGTGATGCAAATAGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017859.1\|WP_002871958.1\|1571655_1573044_-\|NADH-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|223939
NZ_CP017859.1\|WP_002851490.1\|1576314_1576611_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|223785
NZ_CP017859.1\|WP_002856355.1\|1577122_1577764_-\|NADH-quinone-oxidoreductase-subunit-NuoI	unknown	unknown	gnl\|CDD\|235637
NZ_CP017859.1\|WP_154021534.1\|1565151_1565847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350338
NZ_CP017859.1\|WP_002871959.1\|1569267_1571634_-\|paralysed-flagellum-protein	unknown	unknown	gnl\|CDD\|185387
NZ_CP017859.1\|WP_052773674.1\|1556087_1557323_+\|type-I-restriction-endonuclease	unknown	unknown	gnl\|CDD\|341207
NZ_CP017859.1\|WP_070317272.1\|1573033_1574521_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|273903
NZ_CP017859.1\|WP_002855814.1\|1581223_1581916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_002781069.1\|1563293_1563716_+\|low-molecular-weight-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|319973
NZ_CP017859.1\|WP_070317271.1\|1574522_1576313_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP017859.1\|WP_100221722.1\|1559750_1560152_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP017859.1\|WP_002778517.1\|1562979_1563297_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP017859.1\|WP_002873771.1\|1577773_1578772_-\|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl\|CDD\|235692
NZ_CP017859.1\|WP_139865207.1\|1554208_1556086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017859.1\|WP_070317270.1\|1576607_1577126_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
NZ_CP017859.1\|WP_070300725.1\|1557383_1558454_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP017859.1\|WP_070317269.1\|1578764_1581227_-\|NADH-quinone-oxidoreductase-subunit-G	unknown	unknown	gnl\|CDD\|236277
NZ_CP017859.1\|WP_071451636.1\|1560321_1560657_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NZ_CP017859.1\|WP_071451637.1\|1562016_1562970_+\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP017859.1\|WP_071451634.1\|1553186_1553957_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017859.1\|WP_002871958.1\|1571655_1573044_-\|NADH-quinone-oxidoreductase-subunit-N	gnl\|CDD\|223939	COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion].	2.0868e-109
NZ_CP017859.1\|WP_002851490.1\|1576314_1576611_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|223785	COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion].	4.48819e-34
NZ_CP017859.1\|WP_002871959.1\|1569267_1571634_-\|paralysed-flagellum-protein	gnl\|CDD\|185387	PRK15490, PRK15490, Vi polysaccharide biosynthesis glycosyltransferase TviE.	0.0030321
NZ_CP017859.1\|WP_052773674.1\|1556087_1557323_+\|type-I-restriction-endonuclease	gnl\|CDD\|341207	cd17526, RMtype1_S_Cje2232P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Campylobacter jejuni RM 2232 S subunit (S.Cje2232P) TRD2-CR2 and Shewanella baltica OS223 S subunit (S.Sba223ORF389P) TRD1-CR1. The recognition sequences of Campylobacter jejuni RM 2232 S subunit (S.Cje2232P) and Shewanella baltica OS223 S subunit (S.Sba223ORF389P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. Also included in this subfamily is the C-terminal TRD-CR-like sequence-recognition domain of Microcystis aeruginosa putative type I N6-adenine DNA methyltransferase M subunit (M.Mae7806ORF3969P). The recognition sequence of M.Mae7806ORF3969P is undetermined.	2.22489e-85
NZ_CP017859.1\|WP_070317272.1\|1573033_1574521_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|273903	TIGR01972, NADH-quinone_oxidoreductase_subunit_M, proton-translocating NADH-quinone oxidoreductase, chain M. This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport].	2.95346e-159
NZ_CP017859.1\|WP_002781069.1\|1563293_1563716_+\|low-molecular-weight-phosphatase-family-protein	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	8.10025e-34
NZ_CP017859.1\|WP_070317271.1\|1574522_1576313_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP017859.1\|WP_100221722.1\|1559750_1560152_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.97015e-17
NZ_CP017859.1\|WP_002778517.1\|1562979_1563297_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.37356e-14
NZ_CP017859.1\|WP_002873771.1\|1577773_1578772_-\|NADH-quinone-oxidoreductase-subunit-NuoH	gnl\|CDD\|235692	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH.	4.71736e-121
NZ_CP017859.1\|WP_154021534.1\|1565151_1565847_+\|hypothetical-protein	gnl\|CDD\|350338	cd12913, PDC1_MCP_like, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains. Members of this subfamily display varying domain architectures but all contain double PDC (PhoQ/DcuS/CitA) sensor domains. This model represents the first PDC domain of Methyl-accepting chemotaxis proteins (MCPs), Histidine kinases (HKs), and other similar domains. Many members contain both HAMP (HK, Adenylyl cyclase, MCP, and Phosphatase) and MCP domains, which are signalling domains that interact with protein partners to relay a signal. MCPs are part of a transmembrane protein complex that controls bacterial chemotaxis. HK receptors are part of two-component systems (TCS) in bacteria that play a critical role for sensing and adapting to environmental changes. Typically, HK receptors contain an extracellular sensing domain flanked by two transmembrane helices, an intracellular dimerization histidine phosphorylation domain (DHp), and a C-terminal kinase domain, with many variations on this theme. In the case of HKs, signals detected by the sensor domain are transmitted through DHp to the kinase domain, resulting in the phosphorylation of a conserved histidine residue in DHp; phosphotransfer to a conserved aspartate in its cognate response regulator (RR) follows, which leads to the activation of genes for downstream cellular responses.	3.52619e-16
NZ_CP017859.1\|WP_070317270.1\|1576607_1577126_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	1.12433e-42
NZ_CP017859.1\|WP_002856355.1\|1577122_1577764_-\|NADH-quinone-oxidoreductase-subunit-NuoI	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	5.13436e-65
NZ_CP017859.1\|WP_070317269.1\|1578764_1581227_-\|NADH-quinone-oxidoreductase-subunit-G	gnl\|CDD\|236277	PRK08493, PRK08493, NADH-quinone oxidoreductase subunit G.	0
NZ_CP017859.1\|WP_071451636.1\|1560321_1560657_-\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.51593e-32
NZ_CP017859.1\|WP_071451637.1\|1562016_1562970_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	8.30431e-55
NZ_CP017859.1\|WP_070300725.1\|1557383_1558454_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.72978e-46

>NZ_CP017859.1|WP_154021534.1|1565151_1565847_+|hypothetical-protein
MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKTSLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVGPILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTNDIFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQKNKIFAATKKKRF
>NZ_CP017859.1|WP_002781069.1|1563293_1563716_+|low-molecular-weight-phosphatase-family-protein
MKLAFICIHNSCRSQMAEALARHKAEKMGVDIEVFSAGSDTSKGVNSQAIRLMREIYQIDMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLKDPSGSYDDEFKKIIQILDYKITALLQAIKTNSLKDFTC
>NZ_CP017859.1|WP_002778517.1|1562979_1563297_+|helix-turn-helix-transcriptional-regulator
MQKFLTIISAINDESRVLVLYHLLKYQELCVCDLQKLLNMGQSRLSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDNIVLEQNTCENDK
>NZ_CP017859.1|WP_071451637.1|1562016_1562970_+|permease
MLQCSKNFLTKRILYLFVELSVLFIGISFLISIINQKYEGMFRKQLNGDKISSYFKAIFLGALTPFCSCSTIPLLKAFLEARVKLSVCLAYLFTSPLINPIIFTMLFVTFGLKLSLAYVLFLVIFIFIISLIFSKFKEEYFLKHTPKNSAPSIFTQNTKNIGKIVFKPSSCCANTQNKTNDTKINFKKLFKESIANYKKLLPYIVIAVLIGAFIHDFIPQEILQKYLSGNEILSIILAAFFGVLLYLRVETIIPIGLILLQMGISQGVIMSFLIAGAGCSLPELVLLKQMFKMKFLLLFIAIILSVAISFGMLINFI
>NZ_CP017859.1|WP_071451636.1|1560321_1560657_-|cupin-domain-containing-protein
MQELEKAGIHGSFKGDSKFFSKNAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNTSSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE
>NZ_CP017859.1|WP_100221722.1|1559750_1560152_-|carboxymuconolactone-decarboxylase-family-protein
MNFLQVMKDTTTQENRKIKGREIQNTIFGEANITKMIESTPEDKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQSRKDLLNIIAALIPYIGYPKALNALNLLDDIKK
>NZ_CP017859.1|WP_070300725.1|1557383_1558454_+|Fic-family-protein
MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSIPNPSILINALILQEAKDSSEIENIITTHDELFLSRVDENKLTRAAKEVKDYESALKKGYELLKKEQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNDIQELMGNLELYINDDSLDEFDFLVKMAIIHYQFKSIHPFYDGNGRTGRIINILYLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAAKTIETIIKIEKMMSNVGEILQNKTNFYSKDFVELLFSHPYTKIDFLIKKLDISRQSASKYLKICENLGILECIKMGRSNYYINIELLRLFRKGIF
>NZ_CP017859.1|WP_052773674.1|1556087_1557323_+|type-I-restriction-endonuclease
MTNLPQGWEVKKLGEIGEIVTGSTPSKSNLDFYGKDYPFFKPSDFEQGYFLENAGDNLSKLGFDKARQLPPKTILVVCIGSLGKVALTRVIGSCNQQINAIIPHKNIISEYIYYYCISSKFQSILFSKAPQTTLAIFNKTEFSKLEIIYPKDIKEQERIVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENYKLPQGWEWKSLGEISNLIQNGFAASKNNEIPSGYVHLRTHNISTDGNLNFDTLIKIKREFIKEKQSFIEKNDILFNNTNSTELVGKTALVTQNYNYAFSNHLTKIKLKNQYNSKLVVFYFVLLLKNKYFEKICHQWIGQSGINIDKLKKIQIPLPPLKEQEQIAKHLDFVFEKTKALKELYTKELKDYEELKQSLLNKAFKGEL
>NZ_CP017859.1|WP_139865207.1|1554208_1556086_+|hypothetical-protein
MYYFLNLKLKKIASNDELEKLYSKLDITLSCEFIKDIILFFQEQNFNSWTDIILKFKDKYNGLVELALSYFYNNININQFENFIKNIDQTLYQKEISSIYLNCGEYKKSVKITQDLWSDKNLDKTILSKHTLAILQKYYDDNKEILDNDLLTKAINYLKADLDNLKLIELIQLLYCSLLFYKKIDTDIIFKLNKQLLECPINNLDQETVNCICEIYNKYITNNNIVQDTILYDKNTGQAYISKSYYNKIDPSYNYISIIDSFEFDLKLKDDNYIKYSIFFDIYCTIISQKNLPNVSKINIDNNNPLEFFREVFNNITFPIEQERKKLIWQFNNQNCYLFHLKNSLGLDYIELIPMLIEDEDINFHSNNCIPYSGSKILTFSSIVLLQHINKLDIVLQRKNIFIPKSIILEIQNKIQNIENSKNKEIYSLSSNGLSKIDNSKVKEKLEYILKLVDLKQIIDDTKYPISNFKNISIDLKQEINIFSICCINQYQLITEDRFFGYLAEEINAPQIVSNAMSLLIEEKDYIDKAILLDSKKYFYVFGEYVAYNINATCLYKNISSYNISNHDKKIIQIINKYGFLDKLKQYYKNTYEVLYPKINFPKNDYVKHNIELLLNLIEENDNAK
>NZ_CP017859.1|WP_071451634.1|1553186_1553957_+|hypothetical-protein
MFGFKLFSFLNFGSIKQENHNHFNSNIISFIKQNEDYFYNGEFKKSFEILKEYKRDNSSDKKNNYLLLVNEAKYYFDLCNYKKTKENLYYLEKEYKNFIDISFKETQLSLCMHEKDPNKFNEIKQYFLIEKQTNRSNEYFDFMYALNTGDIKQAKKLFDKLKEKEKSEFLKANLYAQSFFKEQNENDALLFIELCETLIQDNKLNFLQKKIILETLYEIEKFFTRKYNISILKNKNYIKNYQDIFLTIFIFHILIL
>NZ_CP017859.1|WP_002871959.1|1569267_1571634_-|paralysed-flagellum-protein
MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTCQKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTSQNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNSDPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQSAINRYRGSVFTSEFILYKLRAQNKLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYTMSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSLAKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDAFAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEVFFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLIESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMHFSAYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDDENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTILTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRARALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ
>NZ_CP017859.1|WP_002871958.1|1571655_1573044_-|NADH-quinone-oxidoreductase-subunit-N
MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYIGISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKEENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIKYFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIKLSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAIFSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLFAFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMILNTAILNGYWYLVLFVALSSVIMLYAYLKILIHALFMKNDRVHNIKFSFIQNFILAFCVCVSTFVILLML
>NZ_CP017859.1|WP_070317272.1|1573033_1574521_-|NADH-quinone-oxidoreductase-subunit-M
MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFADFLQGTSFDYNLSFKILKFFSFHVGVDSIALILMLLSSLMIFLSFLFLKLEQKALVSCIFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSILMLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPLHTWAPKVYANSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAKINLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFGLGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK
>NZ_CP017859.1|WP_070317271.1|1574522_1576313_-|NADH-quinone-oxidoreductase-subunit-L
MQNLALISLFSPFIAFLFASCFALSEKKQFVGIICSLLIALSAFCSLYLLFCNEAFNVSLFEWFAGVNFGFDVDAISLTMMSVVGIVATCVHFYSIFYMAHDEGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNNTYSFAANEAFIINRIADLGMLLGIFWLYLQAGTLKYDEVFSIAQSLDRNALILIATCLFIGAMGKSAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLGAFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLLFLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILGYSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLMVLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKESIEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIISQKMIMPNSLNLMLRFLVATFVILLILVWMV
>NZ_CP017859.1|WP_002851490.1|1576314_1576611_-|NADH-quinone-oxidoreductase-subunit-NuoK
MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLALVAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA
>NZ_CP017859.1|WP_070317270.1|1576607_1577126_-|NADH-quinone-oxidoreductase-subunit-J
MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGFYFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAILLLAMLIGFKYQNISMDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAITLTHKELTKEKQ
>NZ_CP017859.1|WP_002856355.1|1577122_1577764_-|NADH-quinone-oxidoreductase-subunit-NuoI
MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFIGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMETSLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFLTPIDKLKNQVEFEGAGSLRKDADLLVVKTPNYYDVMIERALENQNTQEQGENK
>NZ_CP017859.1|WP_002873771.1|1577773_1578772_-|NADH-quinone-oxidoreductase-subunit-NuoH
MSDFAFFALEALIKCIIVIAIFASLAGLATYAERKVLAYFQRRIGPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLPEFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGATRGLVAIISYESVGALALIAIVMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNRTPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYASMIAGAILVTLLFLGGFNSFWIIPGWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL
>NZ_CP017859.1|WP_070317269.1|1578764_1581227_-|NADH-quinone-oxidoreductase-subunit-G
MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLACRMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSGECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESALKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTGALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFASLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKKFNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGTLLRYDAPTLSYKINNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIKTHLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSIFAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNPTHTNTLGVAMICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYDKRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTNAGDCKRGYELNLEFFKQVAKKEFVSPNFENLNLKEDEILLYSANPSYQFGRFSNRASAINEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLDTLSFFDERFVVANLEKLGANHE
>NZ_CP017859.1|WP_002855814.1|1581223_1581916_-|hypothetical-protein
MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFYKCEIASLSFVLALLCKLSDEGHFCDLDEGYLSAESCFGEEEAGEVLAFLKEAKYLIIDKNIHSYKDSENIKYFLNFLSVKYELKILDSDEEECDFKKAKLNTLKELDNYDGLVLFRVNLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNGFDFTPIRIKEAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017859_1	1.1\|103986\|58\|NZ_CP017859\|CRISPRCasFinder	103986-104043	58	NZ_CP017859.1	191021-191078	0	1.0

1. spacer 1.1|103986|58|NZ_CP017859|CRISPRCasFinder matches to position: 191021-191078, mismatch: 0, identity: 1.0

aagtaaatgataatggatgtagaattaactactaatgctttaggtgatgcaaatagtt	CRISPR spacer
aagtaaatgataatggatgtagaattaactactaatgctttaggtgatgcaaatagtt	Protospacer
**********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017859_2	2.1\|1003188\|39\|NZ_CP017859\|CRISPRCasFinder	1003188-1003226	39	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	158391-158429	0	1.0
NZ_CP017859_2	2.1\|1003188\|39\|NZ_CP017859\|CRISPRCasFinder	1003188-1003226	39	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	16701-16739	0	1.0
NZ_CP017859_2	2.1\|1003188\|39\|NZ_CP017859\|CRISPRCasFinder	1003188-1003226	39	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	107550-107588	2	0.949
NZ_CP017859_4	4.1\|1568412\|33\|NZ_CP017859\|CRISPRCasFinder	1568412-1568444	33	AP018277	Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome	35793-35825	10	0.697

1. spacer 2.1|1003188|39|NZ_CP017859|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

gatgggaagggggaggaagcgataacaaacaaccaccaa	CRISPR spacer
gatgggaagggggaggaagcgataacaaacaaccaccaa	Protospacer
***************************************

2. spacer 2.1|1003188|39|NZ_CP017859|CRISPRCasFinder matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 0, identity: 1.0

gatgggaagggggaggaagcgataacaaacaaccaccaa	CRISPR spacer
gatgggaagggggaggaagcgataacaaacaaccaccaa	Protospacer
***************************************

3. spacer 2.1|1003188|39|NZ_CP017859|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 2, identity: 0.949

gatgggaagggggaggaagcgataacaaacaaccaccaa	CRISPR spacer
gatgggaagggataggaagcgataacaaacaaccaccaa	Protospacer
***********. **************************

4. spacer 4.1|1568412|33|NZ_CP017859|CRISPRCasFinder matches to AP018277 (Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome) position: , mismatch: 10, identity: 0.697

aatgctaaaacaaagtaagtaaatgataatgga	CRISPR spacer
ccatctaaaaccaagtaagtcaatgataaaaac	Protospacer
    ******* ******** ******** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451481 : 455708

Campylobacter_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002875080.1\|451481_451931_+	hypothetical protein	X2KQT3	Campylobacter_phage	3.0e-79	100.0
WP_043020466.1\|451943_452576_+	DUF4376 domain-containing protein	X2KQZ1	Campylobacter_phage	5.9e-97	100.0
WP_071450841.1\|452572_452953_+	hypothetical protein	X2KX26	Campylobacter_phage	6.5e-59	100.0
WP_002801920.1\|453321_454605_+	hypothetical protein	X2KRN1	Campylobacter_phage	1.3e-239	100.0
WP_002858146.1\|454653_455112_+	hypothetical protein	X2KQY5	Campylobacter_phage	2.0e-83	100.0
WP_002857883.1\|455173_455593_+	hypothetical protein	X2KX19	Campylobacter_phage	6.3e-55	100.0
WP_002781772.1\|455510_455708_+	hypothetical protein	X2KPN2	Campylobacter_phage	3.7e-26	96.9

DBSCAN-SWA_2

920122 : 993677

Phaeocystis_globosa_virus(20.0%)

tRNA,integrase,protease,plate

attL 922751:922769|attR 1000971:1000989

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071451611.1\|920122_920632_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_032585073.1\|920722_921139_+	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_032580799.1\|921147_922764_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	2.2e-71	44.4
922751:922769	attL	NA	NA	NA	NA
WP_002858158.1\|922767_924018_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_070317237.1\|924014_925586_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_052795973.1\|925582_926638_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	5.7e-28	35.0
WP_002857878.1\|926683_928084_-	potassium transporter TrkA	NA	NA	NA	NA
WP_002859190.1\|928113_929235_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.9e-70	38.8
WP_002860739.1\|929236_930004_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_079264053.1\|930366_930888_+\|integrase	integrase arm-type DNA-binding domain-containing protein	K7PGY1	Enterobacteria_phage	9.7e-05	31.4
WP_052796493.1\|930938_931877_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020853147.1\|932023_932266_+	hypothetical protein	NA	NA	NA	NA
WP_052796220.1\|932974_933289_-	hypothetical protein	NA	NA	NA	NA
WP_052796221.1\|933825_934227_+	hypothetical protein	NA	NA	NA	NA
WP_087685863.1\|934634_935021_-	hypothetical protein	NA	NA	NA	NA
WP_153885745.1\|935059_935203_-	hypothetical protein	NA	NA	NA	NA
WP_052796223.1\|935564_935861_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	3.8e-14	56.0
WP_002779581.1\|938162_938354_+	hypothetical protein	NA	NA	NA	NA
WP_002835258.1\|939120_939513_+	hypothetical protein	NA	NA	NA	NA
WP_052796492.1\|940760_941756_+	DUF3825 domain-containing protein	NA	NA	NA	NA
WP_052796235.1\|943916_944144_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_032591365.1\|944147_944507_+	HicB family protein	NA	NA	NA	NA
WP_002883553.1\|944639_944873_+	hypothetical protein	NA	NA	NA	NA
WP_002883551.1\|944873_945155_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_052796228.1\|945281_945602_+	hypothetical protein	NA	NA	NA	NA
WP_052796217.1\|948765_949569_-	hypothetical protein	NA	NA	NA	NA
WP_071451612.1\|949568_950861_-	hypothetical protein	NA	NA	NA	NA
WP_071450861.1\|952101_956034_-	hypothetical protein	NA	NA	NA	NA
WP_071450918.1\|956836_958432_-	lysozyme	NA	NA	NA	NA
WP_051009529.1\|960847_961522_-	hypothetical protein	NA	NA	NA	NA
WP_002902203.1\|961636_962050_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_002902200.1\|962046_962919_-	hypothetical protein	NA	NA	NA	NA
WP_002902211.1\|964723_965308_-	hypothetical protein	NA	NA	NA	NA
WP_071450864.1\|965887_966679_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_071451613.1\|967849_968353_-	hypothetical protein	NA	NA	NA	NA
WP_071451614.1\|968353_969886_-	hypothetical protein	NA	NA	NA	NA
WP_071451615.1\|970027_970309_-	hypothetical protein	NA	NA	NA	NA
WP_070317255.1\|970316_971840_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_070317254.1\|972096_972489_-	hypothetical protein	NA	NA	NA	NA
WP_002902277.1\|972485_973022_-	hypothetical protein	NA	NA	NA	NA
WP_002902274.1\|973022_974015_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_002779560.1\|975119_975479_+	hypothetical protein	NA	NA	NA	NA
WP_071450866.1\|975631_979102_+	hypothetical protein	NA	NA	NA	NA
WP_002779664.1\|980252_981152_-	FHA domain-containing protein	NA	NA	NA	NA
WP_002902236.1\|981148_984676_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_002779662.1\|984793_985309_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002869988.1\|985558_986332_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002779660.1\|986328_987726_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002779659.1\|987735_988182_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002779658.1\|988307_989555_+	nucleobase:cation symporter	NA	NA	NA	NA
WP_002800584.1\|989623_990109_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002779655.1\|991566_991959_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002779654.1\|991955_993677_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
1000971:1000989	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1430534 : 1444969

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020836888.1\|1430534_1431671_-	class I SAM-dependent methyltransferase	M4QRS6	Synechococcus_phage	5.6e-66	41.3
WP_071450900.1\|1431657_1432389_-	capsular biosynthesis protein	E3SJ89	Synechococcus_phage	5.0e-15	26.2
WP_020836889.1\|1432385_1433909_-	capsular polysaccharide biosynthesis protein	B2ZYD9	Ralstonia_phage	9.0e-35	27.0
WP_002923537.1\|1433905_1434304_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	9.0e-11	42.0
WP_071450901.1\|1434358_1435084_-	lipopolysaccharide biosynthesis protein	A0A1D8KNV9	Synechococcus_phage	1.4e-46	45.9
WP_071450902.1\|1435080_1435410_-	hypothetical protein	NA	NA	NA	NA
WP_014516850.1\|1435412_1435748_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002903928.1\|1435740_1436466_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	9.2e-30	33.6
WP_002826458.1\|1436459_1437098_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	2.2e-35	43.3
WP_002923523.1\|1437828_1439028_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_071450903.1\|1439035_1439704_-	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	9.2e-08	27.7
WP_002860371.1\|1439691_1440297_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
WP_002860370.1\|1440284_1441304_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	7.1e-60	40.5
WP_071450904.1\|1441378_1442317_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.8e-73	46.3
WP_002876274.1\|1442340_1443375_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-143	72.8
WP_071450905.1\|1443371_1444424_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	1.2e-62	39.4
WP_002895072.1\|1444423_1444969_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	2.2e-15	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017857

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017857_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017857_1

20842-20940

Orphan

Consensus_repeat	Method
AAACTATTCTATTTATGTCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017857_1

>merge|NZ_CP017857|1|20842-20940|CRISPRCasFinder
TAACTATTCTATTTATGTCAATGTATCTTTTAAAGTCCCTATTTTCCATATGGGGTTTCCGAAAAAATGTCAAAAACTATTCTATTTATGTTAAAAACT

>NZ_CP017857|1|1|20842-20940|CRISPRCasFinder
TAACTATTCTATTTATGTCAATGTA	TCTTTTAAAGTCCCTATTTTCCATATGGGGTTTCCGAAAAAATGTCAA
AAACTATTCTATTTATGTTAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017857.1\|WP_071450817.1\|13397_14786_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP017857.1\|WP_002842871.1\|28619_29177_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP017857.1\|WP_071450816.1\|12401_13193_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809052.1\|25064_25388_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809050.1\|24085_24700_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP017857.1\|WP_052794437.1\|23786_23984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_057036247.1\|23337_23790_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_052862161.1\|17197_18427_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP017857.1\|WP_002809200.1\|21540_23334_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP017857.1\|WP_023890766.1\|18534_18813_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809051.1\|24696_25074_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP017857.1\|WP_002779777.1\|14785_15337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002869705.1\|25558_25822_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP017857.1\|WP_002809140.1\|15530_15812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809196.1\|21231_21450_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP017857.1\|WP_002826066.1\|16455_17115_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809302.1\|18973_19183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002826068.1\|15840_16452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_071450814.1\|25840_28609_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP017857.1\|WP_071450815.1\|6561_12375_+\|helicase	unknown	unknown	gnl\|CDD\|226993

Protein	Function_ID	Function_description	E-value
NZ_CP017857.1\|WP_071450817.1\|13397_14786_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.68039e-05
NZ_CP017857.1\|WP_002809051.1\|24696_25074_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09
NZ_CP017857.1\|WP_002842871.1\|28619_29177_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.10319e-35
NZ_CP017857.1\|WP_002869705.1\|25558_25822_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.40975e-06
NZ_CP017857.1\|WP_002809196.1\|21231_21450_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.70969e-11
NZ_CP017857.1\|WP_002809050.1\|24085_24700_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP017857.1\|WP_071450814.1\|25840_28609_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP017857.1\|WP_052862161.1\|17197_18427_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.36018e-28
NZ_CP017857.1\|WP_002809200.1\|21540_23334_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP017857.1\|WP_071450815.1\|6561_12375_+\|helicase	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.11458e-72

>NZ_CP017857.1|WP_002809302.1|18973_19183_-|hypothetical-protein
MARDKSKDDNLFNCSQDYEHDHVVRQYPKEYQDKIRDFLKKACQNKKIYHSKHKEVYDLIEKELGYFTD
>NZ_CP017857.1|WP_023890766.1|18534_18813_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSLQNLHNEAISDEEATKYFKKK
>NZ_CP017857.1|WP_052862161.1|17197_18427_+|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWFYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTTTDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP017857.1|WP_002826066.1|16455_17115_+|hypothetical-protein
MNNTINFNELFSQIRLSSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP017857.1|WP_002826068.1|15840_16452_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP017857.1|WP_002809140.1|15530_15812_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP017857.1|WP_002779777.1|14785_15337_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP017857.1|WP_071450817.1|13397_14786_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGVKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAKATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGANNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERRRTDNILRWTSVRNNEIKRDG
>NZ_CP017857.1|WP_071450816.1|12401_13193_+|hypothetical-protein
MKFFGFMDETGVLVNNTDNKSYFGLGLLRLHDTSRLLQEITIIKAKHKGIIQEEYKKKGINKNVEIGELKFHSLKSEKYLQMYKDIIDACFAYEHFYFSAILINRSKIKNKSKNTWKLHLSFAKAHIKEHCKKKNDAIVIIADYLNKPKNAPFFEDEMRKLKQVFNASMLESETSIFIQLVDIFIGAIICRYKHLGNTHKKVETKPKMQLVKYIEEKLEQKYNEENLKNGNKNCSGNYENDKTLKGKFTIFGEKFYFSVYERQ
>NZ_CP017857.1|WP_071450815.1|6561_12375_+|helicase
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSTIQLDNTREMGRVLSEHNQESRNVRSNDTSIATNTNGISNLGEQRSRQEERTGANRYGDTSRRANKSQSIHSDRTPNLFSFISRNDDERQGTDAARSYNQQSVLETAARNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDPTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNFIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIGSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESNDLLVENQRKSLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGYSLSSYIRSEYATERIGCFDLLEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPRYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKRNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSKEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNQEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDITSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLIANLSKIELLKKDITKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSELNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIMEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFAQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSDFVPKSAKILEDLNKHNKILKENESFILGNIC
>NZ_CP017857.1|WP_002809196.1|21231_21450_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDRDRYFARILELEGCVSQGNTYEEALANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP017857.1|WP_002809200.1|21540_23334_+|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP017857.1|WP_057036247.1|23337_23790_-|hypothetical-protein
MILDTITEIITLDRITKIITIVGFCLAFFQLRNVIKNTKVNVLKTEFDIFGKISEKEKIFVDCYEQSMLSSEESKTQEYYSLYKKSKEQYLSELNLVCLYILEGYFTRKHFFQEYGSKIFSMYDEIKDKDYTSINKLCKKYRCELSKYKK
>NZ_CP017857.1|WP_052794437.1|23786_23984_-|hypothetical-protein
MNNNNIDNLKLYICNESYDYERVMKAFKGEQDLINKIQINQQNPNQSTKSKSINKIQIIQNKNNL
>NZ_CP017857.1|WP_002809050.1|24085_24700_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP017857.1|WP_002809051.1|24696_25074_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP017857.1|WP_002809052.1|25064_25388_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP017857.1|WP_002869705.1|25558_25822_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP017857.1|WP_071450814.1|25840_28609_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLSSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGLNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP017857.1|WP_002842871.1|28619_29177_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKEHKNILRDIKNILNDLREIGDVQCKSNFELSFKVRKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ

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Crispr_ID: NZ_CP017857_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017857_2

21156-21221

Orphan

Consensus_repeat	Method
AAACTATTCTATTTATGTCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017857_2

>merge|NZ_CP017857|2|21156-21221|CRISPRCasFinder
AAACTATTCTATTTATATCAATTTTTGGGGTGTAAATTAATTGTTTGTTCTATTTATGTCAATAGT

>NZ_CP017857|2|2|21156-21221|CRISPRCasFinder
AAACTATTCTATTTATATCAATTTT	TGGGGTGTAAATTAAT
TGTTTGTTCTATTTATGTCAATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017857.1\|WP_071450817.1\|13397_14786_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP017857.1\|WP_002842871.1\|28619_29177_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP017857.1\|WP_071450816.1\|12401_13193_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809052.1\|25064_25388_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809050.1\|24085_24700_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP017857.1\|WP_052794437.1\|23786_23984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_057036247.1\|23337_23790_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_052862161.1\|17197_18427_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP017857.1\|WP_002809200.1\|21540_23334_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP017857.1\|WP_023890766.1\|18534_18813_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809051.1\|24696_25074_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP017857.1\|WP_002779777.1\|14785_15337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002869705.1\|25558_25822_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP017857.1\|WP_002809140.1\|15530_15812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809196.1\|21231_21450_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP017857.1\|WP_002826066.1\|16455_17115_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002809302.1\|18973_19183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_002826068.1\|15840_16452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017857.1\|WP_071450814.1\|25840_28609_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP017857.1\|WP_071450815.1\|6561_12375_+\|helicase	unknown	unknown	gnl\|CDD\|226993

Protein	Function_ID	Function_description	E-value
NZ_CP017857.1\|WP_071450817.1\|13397_14786_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.68039e-05
NZ_CP017857.1\|WP_002809051.1\|24696_25074_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09
NZ_CP017857.1\|WP_002842871.1\|28619_29177_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.10319e-35
NZ_CP017857.1\|WP_002869705.1\|25558_25822_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.40975e-06
NZ_CP017857.1\|WP_002809196.1\|21231_21450_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.70969e-11
NZ_CP017857.1\|WP_002809050.1\|24085_24700_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP017857.1\|WP_071450814.1\|25840_28609_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP017857.1\|WP_052862161.1\|17197_18427_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.36018e-28
NZ_CP017857.1\|WP_002809200.1\|21540_23334_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP017857.1\|WP_071450815.1\|6561_12375_+\|helicase	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.11458e-72

>NZ_CP017857.1|WP_002809302.1|18973_19183_-|hypothetical-protein
MARDKSKDDNLFNCSQDYEHDHVVRQYPKEYQDKIRDFLKKACQNKKIYHSKHKEVYDLIEKELGYFTD
>NZ_CP017857.1|WP_023890766.1|18534_18813_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSLQNLHNEAISDEEATKYFKKK
>NZ_CP017857.1|WP_052862161.1|17197_18427_+|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWFYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTTTDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP017857.1|WP_002826066.1|16455_17115_+|hypothetical-protein
MNNTINFNELFSQIRLSSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP017857.1|WP_002826068.1|15840_16452_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP017857.1|WP_002809140.1|15530_15812_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP017857.1|WP_002779777.1|14785_15337_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP017857.1|WP_071450817.1|13397_14786_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGVKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAKATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGANNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERRRTDNILRWTSVRNNEIKRDG
>NZ_CP017857.1|WP_071450816.1|12401_13193_+|hypothetical-protein
MKFFGFMDETGVLVNNTDNKSYFGLGLLRLHDTSRLLQEITIIKAKHKGIIQEEYKKKGINKNVEIGELKFHSLKSEKYLQMYKDIIDACFAYEHFYFSAILINRSKIKNKSKNTWKLHLSFAKAHIKEHCKKKNDAIVIIADYLNKPKNAPFFEDEMRKLKQVFNASMLESETSIFIQLVDIFIGAIICRYKHLGNTHKKVETKPKMQLVKYIEEKLEQKYNEENLKNGNKNCSGNYENDKTLKGKFTIFGEKFYFSVYERQ
>NZ_CP017857.1|WP_071450815.1|6561_12375_+|helicase
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSTIQLDNTREMGRVLSEHNQESRNVRSNDTSIATNTNGISNLGEQRSRQEERTGANRYGDTSRRANKSQSIHSDRTPNLFSFISRNDDERQGTDAARSYNQQSVLETAARNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDPTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNFIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIGSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESNDLLVENQRKSLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGYSLSSYIRSEYATERIGCFDLLEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPRYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKRNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSKEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNQEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDITSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLIANLSKIELLKKDITKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSELNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIMEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFAQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSDFVPKSAKILEDLNKHNKILKENESFILGNIC
>NZ_CP017857.1|WP_002809196.1|21231_21450_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDRDRYFARILELEGCVSQGNTYEEALANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP017857.1|WP_002809200.1|21540_23334_+|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP017857.1|WP_057036247.1|23337_23790_-|hypothetical-protein
MILDTITEIITLDRITKIITIVGFCLAFFQLRNVIKNTKVNVLKTEFDIFGKISEKEKIFVDCYEQSMLSSEESKTQEYYSLYKKSKEQYLSELNLVCLYILEGYFTRKHFFQEYGSKIFSMYDEIKDKDYTSINKLCKKYRCELSKYKK
>NZ_CP017857.1|WP_052794437.1|23786_23984_-|hypothetical-protein
MNNNNIDNLKLYICNESYDYERVMKAFKGEQDLINKIQINQQNPNQSTKSKSINKIQIIQNKNNL
>NZ_CP017857.1|WP_002809050.1|24085_24700_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP017857.1|WP_002809051.1|24696_25074_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP017857.1|WP_002809052.1|25064_25388_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP017857.1|WP_002869705.1|25558_25822_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP017857.1|WP_071450814.1|25840_28609_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLSSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGLNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP017857.1|WP_002842871.1|28619_29177_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKEHKNILRDIKNILNDLREIGDVQCKSNFELSFKVRKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_CP022078	Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence	956-1003	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_CP045046	Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence	18715-18762	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	20867-20914	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_CP017854	Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence	3962-4009	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	37797-37844	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	3665-3712	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	46123-46170	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_CP044170	Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence	19101-19148	1.0
NZ_CP017857_1	1.1\|20867\|48\|NZ_CP017857\|CRISPRCasFinder	20867-20914	48	NZ_MK541987	Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence	22344-22391	1.0

1. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_CP022078 (Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

2. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_CP045046 (Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

3. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_CP017857 (Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

4. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_CP017854 (Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

5. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

6. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to CP013735 (Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

7. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

8. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_CP044170 (Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

9. spacer 1.1|20867|48|NZ_CP017857|CRISPRCasFinder matches to NZ_MK541987 (Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017859

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017857

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection