CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP017856	Campylobacter jejuni strain ZP3204 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	0	3
NZ_CP017854	Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence	2 crisprs	NA	1	0
NZ_CP017855	Campylobacter jejuni strain ZP3204 plasmid pCJDM204S, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017856_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017856_1

1564797-1564909

Orphan

Consensus_repeat	Method
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP017856_1

>merge|NZ_CP017856|1|1564797-1564909|CRISPRCasFinder
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAATTCAAATAAGTGATTAAAAGAATGTTTGGTTTTAAATTATTTAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA

>NZ_CP017856|1|1|1564797-1564909|CRISPRCasFinder
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA	TTCAAATAAGTGATTAAAAGAATGTTTGGTTTTAAATTATT
TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017856.1\|WP_052773674.1\|1567899_1569135_+\|type-I-restriction-endonuclease	unknown	unknown	gnl\|CDD\|341207
NZ_CP017856.1\|WP_070300725.1\|1569254_1570325_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP017856.1\|WP_002884274.1\|1556957_1557698_+\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|224960
NZ_CP017856.1\|WP_002865110.1\|1579398_1581765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185387
NZ_CP017856.1\|WP_100221722.1\|1571887_1572289_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP017856.1\|WP_002860674.1\|1559569_1560148_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP017856.1\|WP_059280224.1\|1574280_1575228_+\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP017856.1\|WP_002858255.1\|1557678_1558644_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_CP017856.1\|WP_002917885.1\|1570325_1571810_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|280533
NZ_CP017856.1\|WP_002860673.1\|1560247_1560589_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP017856.1\|WP_002855515.1\|1572458_1572878_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NZ_CP017856.1\|WP_002869215.1\|1558640_1559537_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP017856.1\|WP_002851457.1\|1556180_1556948_+\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|224457
NZ_CP017856.1\|WP_002778517.1\|1575237_1575555_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP017856.1\|WP_002781069.1\|1575551_1575974_+\|low-molecular-weight-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|319973
NZ_CP017856.1\|WP_002865111.1\|1581786_1583175_-\|NADH-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|223939
NZ_CP017856.1\|WP_002873046.1\|1560589_1561141_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017856.1\|WP_002851335.1\|1555229_1556039_+\|solute-binding-protein	unknown	unknown	gnl\|CDD\|225544
NZ_CP017856.1\|WP_070306810.1\|1562351_1564661_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226581
NZ_CP017856.1\|WP_052775262.1\|1561143_1562220_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186

Protein	Function_ID	Function_description	E-value
NZ_CP017856.1\|WP_052773674.1\|1567899_1569135_+\|type-I-restriction-endonuclease	gnl\|CDD\|341207	cd17526, RMtype1_S_Cje2232P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Campylobacter jejuni RM 2232 S subunit (S.Cje2232P) TRD2-CR2 and Shewanella baltica OS223 S subunit (S.Sba223ORF389P) TRD1-CR1. The recognition sequences of Campylobacter jejuni RM 2232 S subunit (S.Cje2232P) and Shewanella baltica OS223 S subunit (S.Sba223ORF389P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. Also included in this subfamily is the C-terminal TRD-CR-like sequence-recognition domain of Microcystis aeruginosa putative type I N6-adenine DNA methyltransferase M subunit (M.Mae7806ORF3969P). The recognition sequence of M.Mae7806ORF3969P is undetermined.	2.22489e-85
NZ_CP017856.1\|WP_070300725.1\|1569254_1570325_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.72978e-46
NZ_CP017856.1\|WP_002884274.1\|1556957_1557698_+\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.34617e-105
NZ_CP017856.1\|WP_002865110.1\|1579398_1581765_-\|hypothetical-protein	gnl\|CDD\|185387	PRK15490, PRK15490, Vi polysaccharide biosynthesis glycosyltransferase TviE.	0.00147395
NZ_CP017856.1\|WP_100221722.1\|1571887_1572289_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.97015e-17
NZ_CP017856.1\|WP_002860674.1\|1559569_1560148_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	9.90329e-52
NZ_CP017856.1\|WP_059280224.1\|1574280_1575228_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	8.14618e-55
NZ_CP017856.1\|WP_002858255.1\|1557678_1558644_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.02709e-149
NZ_CP017856.1\|WP_002917885.1\|1570325_1571810_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	1.40941e-63
NZ_CP017856.1\|WP_002860673.1\|1560247_1560589_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.11521e-37
NZ_CP017856.1\|WP_002855515.1\|1572458_1572878_-\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	9.82208e-45
NZ_CP017856.1\|WP_002869215.1\|1558640_1559537_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	9.81329e-10
NZ_CP017856.1\|WP_002851457.1\|1556180_1556948_+\|LamB/YcsF-family-protein	gnl\|CDD\|224457	COG1540, COG1540, Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only].	2.19492e-154
NZ_CP017856.1\|WP_002778517.1\|1575237_1575555_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.37356e-14
NZ_CP017856.1\|WP_002781069.1\|1575551_1575974_+\|low-molecular-weight-phosphatase-family-protein	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	8.10025e-34
NZ_CP017856.1\|WP_002865111.1\|1581786_1583175_-\|NADH-quinone-oxidoreductase-subunit-N	gnl\|CDD\|223939	COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion].	1.75364e-108
NZ_CP017856.1\|WP_002851335.1\|1555229_1556039_+\|solute-binding-protein	gnl\|CDD\|225544	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism].	2.9396e-147
NZ_CP017856.1\|WP_070306810.1\|1562351_1564661_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.37342e-119
NZ_CP017856.1\|WP_052775262.1\|1561143_1562220_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.23538e-164

>NZ_CP017856.1|WP_070306810.1|1562351_1564661_+|DEAD/DEAH-box-helicase
MQNLYSEDDTRVKFIDAKLYNSSWYEENIKRNYYFTDGRKLLGGKRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKIYEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAIDKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRVSLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENIQEEQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEENIDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFYKQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCVNQAHANEVKRAIDKYKSVKRDDYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGSMVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKEHIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYYDDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAEIKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLGRYQQYGIKDFDDGLKPLIELSSLGNVRELADEFGGLEILKQSFDDLQREIYLN
>NZ_CP017856.1|WP_052775262.1|1561143_1562220_-|NAD(P)-dependent-alcohol-dehydrogenase
MQYKILENNRIASKGYAMLSKDAKFTAFEFSRHAIGDNDILIKILYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNSCGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAICVPKNAPMDKVAPLLCAGITTYSPLRFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFARNENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSAYMDLLKFGGEMAIVGLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQEIDKAYENLTSGKAKFRYVIDMRDE
>NZ_CP017856.1|WP_002873046.1|1560589_1561141_+|hypothetical-protein
MIKTIKILAFLAIFAFALSIALCFYLFFDYFIEERNIIILTLIFISMICGILLYFLSIILLSFKLKSISFALIFLGFLFCVLASFGFYQCYIEYNNFLFSQTKGKLAFYFCAFFTTLAFILGYFHFKTMAKISSWNEFLFVYKFFMVALIVSYFNAFFGFFMLGASAILLFISWYKFKTLKES
>NZ_CP017856.1|WP_002860673.1|1560247_1560589_+|helix-turn-helix-transcriptional-regulator
MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNELKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCDWEEENKKLQGK
>NZ_CP017856.1|WP_002860674.1|1559569_1560148_-|NAD(P)H-dependent-oxidoreductase
MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHIDQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHENPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGMKALPTFMCNDVVKNPQVEKYLNEYELHLKKIF
>NZ_CP017856.1|WP_002869215.1|1558640_1559537_-|DMT-family-transporter
MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFFVVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTTMIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFNILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFKFWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNALTLLGCALAIGAIYFINIYGKKA
>NZ_CP017856.1|WP_002858255.1|1557678_1558644_+|biotin-dependent-carboxyltransferase-family-protein
MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANILLGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILELDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPFNLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAESSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLLAQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI
>NZ_CP017856.1|WP_002884274.1|1556957_1557698_+|5-oxoprolinase-subunit-PxpB
MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKKGEIYGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEEFGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPRAKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKAISKDEFFEIQEQVAKKVYQKEIYEYKNH
>NZ_CP017856.1|WP_002851457.1|1556180_1556948_+|LamB/YcsF-family-protein
MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPCVMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAKGMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLRYANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKADSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI
>NZ_CP017856.1|WP_002851335.1|1555229_1556039_+|solute-binding-protein
MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKESGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIIIADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWYQQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVIATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD
>NZ_CP017856.1|WP_052773674.1|1567899_1569135_+|type-I-restriction-endonuclease
MTNLPQGWEVKKLGEIGEIVTGSTPSKSNLDFYGKDYPFFKPSDFEQGYFLENAGDNLSKLGFDKARQLPPKTILVVCIGSLGKVALTRVIGSCNQQINAIIPHKNIISEYIYYYCISSKFQSILFSKAPQTTLAIFNKTEFSKLEIIYPKDIKEQERIVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENYKLPQGWEWKSLGEISNLIQNGFAASKNNEIPSGYVHLRTHNISTDGNLNFDTLIKIKREFIKEKQSFIEKNDILFNNTNSTELVGKTALVTQNYNYAFSNHLTKIKLKNQYNSKLVVFYFVLLLKNKYFEKICHQWIGQSGINIDKLKKIQIPLPPLKEQEQIAKHLDFVFEKTKALKELYTKELKDYEELKQSLLNKAFKGEL
>NZ_CP017856.1|WP_070300725.1|1569254_1570325_+|Fic-family-protein
MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSIPNPSILINALILQEAKDSSEIENIITTHDELFLSRVDENKLTRAAKEVKDYESALKKGYELLKKEQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNDIQELMGNLELYINDDSLDEFDFLVKMAIIHYQFKSIHPFYDGNGRTGRIINILYLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAAKTIETIIKIEKMMSNVGEILQNKTNFYSKDFVELLFSHPYTKIDFLIKKLDISRQSASKYLKICENLGILECIKMGRSNYYINIELLRLFRKGIF
>NZ_CP017856.1|WP_002917885.1|1570325_1571810_+|type-I-restriction-modification-system-subunit-M
MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEKLLKDMGSDGGNSGEFYTPRPLIKAMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTLNKKITDITQSEKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCAIIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNYDLSAKNPNVKEEKILRTSEEILNSLEENLKIQQEYLNELKSILK
>NZ_CP017856.1|WP_100221722.1|1571887_1572289_-|carboxymuconolactone-decarboxylase-family-protein
MNFLQVMKDTTTQENRKIKGREIQNTIFGEANITKMIESTPEDKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQSRKDLLNIIAALIPYIGYPKALNALNLLDDIKK
>NZ_CP017856.1|WP_002855515.1|1572458_1572878_-|cupin-domain-containing-protein
MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVEFEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNTSSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE
>NZ_CP017856.1|WP_059280224.1|1574280_1575228_+|permease
MQVFFNTFKEFLYLFVELSVLFIGISFLISIINQKYEGMFRKQLNGDKISSYFKAIFLGALTPFCSCSTIPLLKAFLEARVKLSVCLAYLFTSPLINPIIFTMLFVTFGLKLSLAYVLFLVIFIFIISLIFSKFKEEYFLKHTPKNSAPSIFTQNTKNIGKIVFKPSSCCANTQNKTNDTKINFKKLFKESIANYKKLLPYIVIAVLIGAFIHDFIPQEILQKYLSGNEILSIILAAFFGVLLYLRVETIIPIGLILLQMGISQGVIMSFLIAGAGCSLPELVLLKQMFKMKFLLLFIAIILSVAISFGMLINFI
>NZ_CP017856.1|WP_002778517.1|1575237_1575555_+|helix-turn-helix-transcriptional-regulator
MQKFLTIISAINDESRVLVLYHLLKYQELCVCDLQKLLNMGQSRLSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDNIVLEQNTCENDK
>NZ_CP017856.1|WP_002781069.1|1575551_1575974_+|low-molecular-weight-phosphatase-family-protein
MKLAFICIHNSCRSQMAEALARHKAEKMGVDIEVFSAGSDTSKGVNSQAIRLMREIYQIDMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLKDPSGSYDDEFKKIIQILDYKITALLQAIKTNSLKDFTC
>NZ_CP017856.1|WP_002865110.1|1579398_1581765_-|hypothetical-protein
MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTCQKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTSQNIYIDKELSSSSSHKSKAFTFIFAPELAPIKDYDGLDFNINFPHESLPYVGALDLNSDPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQNKLYTQDPSIRDQQILEKMIDDAKNWMRTFTSDKNFSEVLHIMLKTYIALAQRADVEYTMSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSLAKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDTFAKMSKLDPSYEETLKDLALVLSHTNRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEVFFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLIESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDDENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTILTYAPKAIDYQNFKGINLFSPNLEFMYLDTLAKINKNEESLAVLTDLLKLKLSDKDKARALYIQALTYERMQNIQAEKESLKQCLEIKSVSNWQNLCKSKNQILNQ
>NZ_CP017856.1|WP_002865111.1|1581786_1583175_-|NADH-quinone-oxidoreductase-subunit-N
MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYIGISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKEENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIATRGSDNAISSAIKYFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIKLSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAIFSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLFAFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMILNTAILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVHNIKFSFIQNFILAFCVCVSTFAILLML

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451556 : 460043

Campylobacter_phage(88.89%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011049719.1\|451556_452591_+	hypothetical protein	A0A2I7SBK1	Pseudomonas_phage	1.2e-17	30.9
WP_002861675.1\|452590_452995_+	hypothetical protein	NA	NA	NA	NA
WP_002874379.1\|452975_453170_+	hypothetical protein	NA	NA	NA	NA
WP_052795871.1\|453172_455815_+	hypothetical protein	X2KLU0	Campylobacter_phage	6.8e-46	67.5
WP_002875080.1\|455816_456266_+	hypothetical protein	X2KQT3	Campylobacter_phage	3.0e-79	100.0
WP_043020466.1\|456278_456911_+	DUF4376 domain-containing protein	X2KQZ1	Campylobacter_phage	5.9e-97	100.0
WP_071450841.1\|456907_457288_+	hypothetical protein	X2KX26	Campylobacter_phage	6.5e-59	100.0
WP_002801920.1\|457656_458940_+	hypothetical protein	X2KRN1	Campylobacter_phage	1.3e-239	100.0
WP_002858146.1\|458988_459447_+	hypothetical protein	X2KQY5	Campylobacter_phage	2.0e-83	100.0
WP_002857883.1\|459508_459928_+	hypothetical protein	X2KX19	Campylobacter_phage	6.3e-55	100.0
WP_002781772.1\|459845_460043_+	hypothetical protein	X2KPN2	Campylobacter_phage	3.7e-26	96.9

DBSCAN-SWA_2

930894 : 1002224

Phaeocystis_globosa_virus(20.0%)

tRNA,integrase,plate,protease

attL 933540:933558|attR 1009731:1009749

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002853058.1\|930894_931413_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_032585073.1\|931511_931928_+	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_032580799.1\|931936_933553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	2.2e-71	44.4
933540:933558	attL	NA	NA	NA	NA
WP_002858158.1\|933556_934807_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_070317237.1\|934803_936375_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_052795973.1\|936371_937427_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	5.7e-28	35.0
WP_002857878.1\|937472_938873_-	potassium transporter TrkA	NA	NA	NA	NA
WP_002859190.1\|938902_940024_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.9e-70	38.8
WP_002860739.1\|940025_940793_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_079264053.1\|941155_941677_+\|integrase	integrase arm-type DNA-binding domain-containing protein	K7PGY1	Enterobacteria_phage	9.7e-05	31.4
WP_052796493.1\|941727_942666_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020853147.1\|942812_943055_+	hypothetical protein	NA	NA	NA	NA
WP_052796220.1\|943763_944078_-	hypothetical protein	NA	NA	NA	NA
WP_052796221.1\|944614_945016_+	hypothetical protein	NA	NA	NA	NA
WP_087685863.1\|945423_945810_-	hypothetical protein	NA	NA	NA	NA
WP_052796223.1\|946353_946650_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	3.8e-14	56.0
WP_002779581.1\|948951_949143_+	hypothetical protein	NA	NA	NA	NA
WP_002835258.1\|949966_950359_+	hypothetical protein	NA	NA	NA	NA
WP_052796492.1\|951606_952602_+	DUF3825 domain-containing protein	NA	NA	NA	NA
WP_052796235.1\|954762_954990_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_032591365.1\|954993_955353_+	HicB family protein	NA	NA	NA	NA
WP_002883553.1\|955485_955719_+	hypothetical protein	NA	NA	NA	NA
WP_002883551.1\|955719_956001_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_052796228.1\|956127_956448_+	hypothetical protein	NA	NA	NA	NA
WP_052796217.1\|959611_960415_-	hypothetical protein	NA	NA	NA	NA
WP_071450861.1\|961536_965469_-	hypothetical protein	NA	NA	NA	NA
WP_071450918.1\|966354_967950_-	lysozyme	NA	NA	NA	NA
WP_071450862.1\|968867_969365_-	hypothetical protein	NA	NA	NA	NA
WP_051009529.1\|970487_971162_-	hypothetical protein	NA	NA	NA	NA
WP_002902203.1\|971276_971690_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_002902200.1\|971686_972559_-	hypothetical protein	NA	NA	NA	NA
WP_002902211.1\|974363_974948_-	hypothetical protein	NA	NA	NA	NA
WP_071450864.1\|975527_976319_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_079865839.1\|976927_977443_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_071450865.1\|977423_978944_-	hypothetical protein	NA	NA	NA	NA
WP_016818319.1\|979085_979403_-	hypothetical protein	NA	NA	NA	NA
WP_070317255.1\|979410_980934_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_070317254.1\|981190_981583_-	hypothetical protein	NA	NA	NA	NA
WP_002902277.1\|981579_982116_-	hypothetical protein	NA	NA	NA	NA
WP_002902274.1\|982116_983109_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_002779560.1\|984213_984573_+	hypothetical protein	NA	NA	NA	NA
WP_071450866.1\|984725_988196_+	hypothetical protein	NA	NA	NA	NA
WP_154021517.1\|988207_988795_+	hypothetical protein	NA	NA	NA	NA
WP_002779664.1\|988798_989698_-	FHA domain-containing protein	NA	NA	NA	NA
WP_002902236.1\|989694_993222_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_002779662.1\|993339_993855_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002869988.1\|994104_994878_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002779660.1\|994874_996272_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_071450867.1\|996281_996728_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002779658.1\|996853_998101_+	nucleobase:cation symporter	NA	NA	NA	NA
WP_002800584.1\|998169_998655_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002869989.1\|998656_1000111_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002779655.1\|1000113_1000506_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002779654.1\|1000502_1002224_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
1009731:1009749	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1442080 : 1456514

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020836888.1\|1442080_1443217_-	class I SAM-dependent methyltransferase	M4QRS6	Synechococcus_phage	5.6e-66	41.3
WP_071450900.1\|1443203_1443935_-	capsular biosynthesis protein	E3SJ89	Synechococcus_phage	5.0e-15	26.2
WP_020836889.1\|1443931_1445455_-	capsular polysaccharide biosynthesis protein	B2ZYD9	Ralstonia_phage	9.0e-35	27.0
WP_002923537.1\|1445451_1445850_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	9.0e-11	42.0
WP_071450901.1\|1445904_1446630_-	lipopolysaccharide biosynthesis protein	A0A1D8KNV9	Synechococcus_phage	1.4e-46	45.9
WP_071450902.1\|1446626_1446956_-	hypothetical protein	NA	NA	NA	NA
WP_014516850.1\|1446958_1447294_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002903928.1\|1447286_1448012_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	9.2e-30	33.6
WP_002826458.1\|1448005_1448644_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	2.2e-35	43.3
WP_070290087.1\|1448636_1449275_-	hypothetical protein	NA	NA	NA	NA
WP_002923523.1\|1449373_1450573_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_071450903.1\|1450580_1451249_-	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	9.2e-08	27.7
WP_002860371.1\|1451236_1451842_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
WP_002860370.1\|1451829_1452849_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	7.1e-60	40.5
WP_071450904.1\|1452923_1453862_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.8e-73	46.3
WP_002876274.1\|1453885_1454920_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-143	72.8
WP_071450905.1\|1454916_1455969_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	1.2e-62	39.4
WP_002895072.1\|1455968_1456514_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	2.2e-15	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017854

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017854_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017854_1

3937-4035

Orphan

Consensus_repeat	Method
AAACTATTCTATTTATGTCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017854_1

>merge|NZ_CP017854|1|3937-4035|CRISPRCasFinder
TAACTATTCTATTTATGTCAATGTATCTTTTAAAGTCCCTATTTTCCATATGGGGTTTCCGAAAAAATGTCAAAAACTATTCTATTTATGTTAAAAACT

>NZ_CP017854|1|1|3937-4035|CRISPRCasFinder
TAACTATTCTATTTATGTCAATGTA	TCTTTTAAAGTCCCTATTTTCCATATGGGGTTTCCGAAAAAATGTCAA
AAACTATTCTATTTATGTTAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017854.1\|WP_071450814.1\|8935_11704_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP017854.1\|WP_002809302.1\|2068_2278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_002869705.1\|8653_8917_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP017854.1\|WP_057036247.1\|6432_6885_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_002809050.1\|7180_7795_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP017854.1\|WP_052862161.1\|292_1522_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP017854.1\|WP_002809200.1\|4635_6429_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP017854.1\|WP_002842871.1\|11714_12272_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP017854.1\|WP_002809052.1\|8159_8483_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_052794437.1\|6881_7079_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_023890766.1\|1629_1908_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP017854.1\|WP_002809196.1\|4326_4545_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP017854.1\|WP_002809051.1\|7791_8169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846

Protein	Function_ID	Function_description	E-value
NZ_CP017854.1\|WP_052862161.1\|292_1522_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.36018e-28
NZ_CP017854.1\|WP_002809200.1\|4635_6429_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP017854.1\|WP_002842871.1\|11714_12272_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.10319e-35
NZ_CP017854.1\|WP_071450814.1\|8935_11704_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP017854.1\|WP_002869705.1\|8653_8917_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.40975e-06
NZ_CP017854.1\|WP_002809050.1\|7180_7795_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP017854.1\|WP_002809196.1\|4326_4545_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.70969e-11
NZ_CP017854.1\|WP_002809051.1\|7791_8169_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09

>NZ_CP017854.1|WP_002809302.1|2068_2278_-|hypothetical-protein
MARDKSKDDNLFNCSQDYEHDHVVRQYPKEYQDKIRDFLKKACQNKKIYHSKHKEVYDLIEKELGYFTD
>NZ_CP017854.1|WP_023890766.1|1629_1908_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSLQNLHNEAISDEEATKYFKKK
>NZ_CP017854.1|WP_052862161.1|292_1522_+|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWFYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTTTDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP017854.1|WP_002809196.1|4326_4545_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDRDRYFARILELEGCVSQGNTYEEALANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP017854.1|WP_002809200.1|4635_6429_+|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP017854.1|WP_057036247.1|6432_6885_-|hypothetical-protein
MILDTITEIITLDRITKIITIVGFCLAFFQLRNVIKNTKVNVLKTEFDIFGKISEKEKIFVDCYEQSMLSSEESKTQEYYSLYKKSKEQYLSELNLVCLYILEGYFTRKHFFQEYGSKIFSMYDEIKDKDYTSINKLCKKYRCELSKYKK
>NZ_CP017854.1|WP_052794437.1|6881_7079_-|hypothetical-protein
MNNNNIDNLKLYICNESYDYERVMKAFKGEQDLINKIQINQQNPNQSTKSKSINKIQIIQNKNNL
>NZ_CP017854.1|WP_002809050.1|7180_7795_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP017854.1|WP_002809051.1|7791_8169_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP017854.1|WP_002809052.1|8159_8483_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP017854.1|WP_002869705.1|8653_8917_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP017854.1|WP_071450814.1|8935_11704_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLSSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGLNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP017854.1|WP_002842871.1|11714_12272_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKEHKNILRDIKNILNDLREIGDVQCKSNFELSFKVRKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ

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Crispr_ID: NZ_CP017854_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017854_2

4251-4316

Orphan

Consensus_repeat	Method
AAACTATTCTATTTATGTCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017854_2

>merge|NZ_CP017854|2|4251-4316|CRISPRCasFinder
AAACTATTCTATTTATATCAATTTTTGGGGTGTAAATTAATTGTTTGTTCTATTTATGTCAATAGT

>NZ_CP017854|2|2|4251-4316|CRISPRCasFinder
AAACTATTCTATTTATATCAATTTT	TGGGGTGTAAATTAAT
TGTTTGTTCTATTTATGTCAATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017854.1\|WP_071450814.1\|8935_11704_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP017854.1\|WP_002809302.1\|2068_2278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_002869705.1\|8653_8917_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP017854.1\|WP_057036247.1\|6432_6885_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_002809050.1\|7180_7795_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP017854.1\|WP_052862161.1\|292_1522_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP017854.1\|WP_002809200.1\|4635_6429_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP017854.1\|WP_002842871.1\|11714_12272_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP017854.1\|WP_002809052.1\|8159_8483_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_052794437.1\|6881_7079_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017854.1\|WP_023890766.1\|1629_1908_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP017854.1\|WP_002809196.1\|4326_4545_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP017854.1\|WP_002809051.1\|7791_8169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846

Protein	Function_ID	Function_description	E-value
NZ_CP017854.1\|WP_052862161.1\|292_1522_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.36018e-28
NZ_CP017854.1\|WP_002809200.1\|4635_6429_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP017854.1\|WP_002842871.1\|11714_12272_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.10319e-35
NZ_CP017854.1\|WP_071450814.1\|8935_11704_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP017854.1\|WP_002869705.1\|8653_8917_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.40975e-06
NZ_CP017854.1\|WP_002809050.1\|7180_7795_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP017854.1\|WP_002809196.1\|4326_4545_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.70969e-11
NZ_CP017854.1\|WP_002809051.1\|7791_8169_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09

>NZ_CP017854.1|WP_002809302.1|2068_2278_-|hypothetical-protein
MARDKSKDDNLFNCSQDYEHDHVVRQYPKEYQDKIRDFLKKACQNKKIYHSKHKEVYDLIEKELGYFTD
>NZ_CP017854.1|WP_023890766.1|1629_1908_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSLQNLHNEAISDEEATKYFKKK
>NZ_CP017854.1|WP_052862161.1|292_1522_+|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWFYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTTTDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP017854.1|WP_002809196.1|4326_4545_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDRDRYFARILELEGCVSQGNTYEEALANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP017854.1|WP_002809200.1|4635_6429_+|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP017854.1|WP_057036247.1|6432_6885_-|hypothetical-protein
MILDTITEIITLDRITKIITIVGFCLAFFQLRNVIKNTKVNVLKTEFDIFGKISEKEKIFVDCYEQSMLSSEESKTQEYYSLYKKSKEQYLSELNLVCLYILEGYFTRKHFFQEYGSKIFSMYDEIKDKDYTSINKLCKKYRCELSKYKK
>NZ_CP017854.1|WP_052794437.1|6881_7079_-|hypothetical-protein
MNNNNIDNLKLYICNESYDYERVMKAFKGEQDLINKIQINQQNPNQSTKSKSINKIQIIQNKNNL
>NZ_CP017854.1|WP_002809050.1|7180_7795_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP017854.1|WP_002809051.1|7791_8169_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP017854.1|WP_002809052.1|8159_8483_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP017854.1|WP_002869705.1|8653_8917_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP017854.1|WP_071450814.1|8935_11704_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLSSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGLNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP017854.1|WP_002842871.1|11714_12272_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKEHKNILRDIKNILNDLREIGDVQCKSNFELSFKVRKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_CP022078	Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence	956-1003	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_CP045046	Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence	18715-18762	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	20867-20914	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_CP017854	Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence	3962-4009	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	37797-37844	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	3665-3712	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	46123-46170	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_CP044170	Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence	19101-19148	1.0
NZ_CP017854_1	1.1\|3962\|48\|NZ_CP017854\|CRISPRCasFinder	3962-4009	48	NZ_MK541987	Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence	22344-22391	1.0

1. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_CP022078 (Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

2. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_CP045046 (Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

3. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_CP017857 (Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

4. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_CP017854 (Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

5. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

6. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to CP013735 (Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

7. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

8. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_CP044170 (Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

9. spacer 1.1|3962|48|NZ_CP017854|CRISPRCasFinder matches to NZ_MK541987 (Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017856

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017854

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection