CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017671	Providencia rettgeri strain RB151 chromosome, complete genome	3 crisprs	WYL,DEDDh,csa3,DinG,cas1,cas3f,cas5f,cas7f,cas6f,cas3	0	12	8	0
NZ_CP017672	Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017671_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017671_1

1691416-1692406

Unclear

I-F

Consensus_repeat	Method
GTTCACTGCCATACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCATGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCATNCAGGCAGCTTAGAAA	CRT

16 spacers

cas1,cas3f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP017671_1

>merge|NZ_CP017671|1|1691416-1692406|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCATACAGGCAGCTTAGAAATAATTTAATTTCCATTGCTGTTTTCCTCATCTGTTCACTGCCATACAGGCAGCTTAGAAATTTGACACCTTTTTCACCGTCAAAAACAACAAGTTCACTGCCATACAGGCAGCTTAGAAATACGATAAACATCAGTTAGTGGGTATCCAAACGTTCACTGCCATACAGGCAGCTTAGAAAATGAGCACGCTAAGTTGATTCGGCGATAAACAGTTCACTGCCATACAGGCAGCTTAGAAATGACCACGTCACCGTTTCACCAACTATTGATGGTTCACTGCCATACAGGCAGCTTAGAAATGTTTCTAAGTACCGAACAAGAGAAAACTTTGTGTTCACTGCCATGCAGGCAGCTTAGAAAAGTGCAAACGTCGATTAATGGCAGCGTAGTAAGTTCACTGCCATGCAGGCAGCTTAGAAAAGACATAGAGCTATCAAGAACCGCCTCAGCTCGTTCACTGCCATGCAGGCAGCTTAGAAAGAAAAGATAAGTTCTTGGGCAGACCTGAGACAGTTCACTGCCATGCAGGCAGCTTAGAAATTTTCCTTTGTTTTATCTATTCACGTAAAACAGTTCACTGCCATACAGGCAGCTTAGAAACTGCAAATGTCGAATTGCTAGGCGCGGGGAAATGTTCACTGCCATGCAGGCAGCTTAGAAAATCGCCGTGAAATCAGACTCAGCGAATCGAATGGTTCACTGCCATGCAGGCAGCTTAGAAACGAAGTGGAAAAGAAAAGAGCAACTATTGATTGTTCACTGCCATACAGGCAGCTTAGAAAGGAACTAACGCGGCTACGCCATAAATTATCGTGTTCACTGCCGTACAGGCAGCTTAGAAATCATGCTGATGAATGGGATCAGGATGTTCTCTGTTCACTGCCGTATAGGCAGCTTAGAAATCTTCATTGCATCCCTGCGAGTTAAATTAATCGTTCACTGCCATAAAGGCAGCTAAAAAA

>NZ_CP017671|1|1|1691416-1692346|PILER-CR
GTTCACTGCCATACAGGCAGCTTAGAAA	TAATTTAATTTCCATTGCTGTTTTCCTCATCT
GTTCACTGCCATACAGGCAGCTTAGAAA	TTTGACACCTTTTTCACCGTCAAAAACAACAA
GTTCACTGCCATACAGGCAGCTTAGAAA	TACGATAAACATCAGTTAGTGGGTATCCAAAC
GTTCACTGCCATACAGGCAGCTTAGAAA	ATGAGCACGCTAAGTTGATTCGGCGATAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	TGACCACGTCACCGTTTCACCAACTATTGATG
GTTCACTGCCATACAGGCAGCTTAGAAA	TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGTGCAAACGTCGATTAATGGCAGCGTAGTAA
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGACATAGAGCTATCAAGAACCGCCTCAGCTC
GTTCACTGCCATGCAGGCAGCTTAGAAA	GAAAAGATAAGTTCTTGGGCAGACCTGAGACA
GTTCACTGCCATGCAGGCAGCTTAGAAA	TTTTCCTTTGTTTTATCTATTCACGTAAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT
GTTCACTGCCATGCAGGCAGCTTAGAAA	ATCGCCGTGAAATCAGACTCAGCGAATCGAATG
GTTCACTGCCATGCAGGCAGCTTAGAAA	CGAAGTGGAAAAGAAAAGAGCAACTATTGATT
GTTCACTGCCATACAGGCAGCTTAGAAA	GGAACTAACGCGGCTACGCCATAAATTATCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCATGCTGATGAATGGGATCAGGATGTTCTCT
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP017671|1|1|1691416-1692406|CRISPRCasFinder
GTTCACTGCCATACAGGCAGCTTAGAAA	TAATTTAATTTCCATTGCTGTTTTCCTCATCT
GTTCACTGCCATACAGGCAGCTTAGAAA	TTTGACACCTTTTTCACCGTCAAAAACAACAA
GTTCACTGCCATACAGGCAGCTTAGAAA	TACGATAAACATCAGTTAGTGGGTATCCAAAC
GTTCACTGCCATACAGGCAGCTTAGAAA	ATGAGCACGCTAAGTTGATTCGGCGATAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	TGACCACGTCACCGTTTCACCAACTATTGATG
GTTCACTGCCATACAGGCAGCTTAGAAA	TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGTGCAAACGTCGATTAATGGCAGCGTAGTAA
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGACATAGAGCTATCAAGAACCGCCTCAGCTC
GTTCACTGCCATGCAGGCAGCTTAGAAA	GAAAAGATAAGTTCTTGGGCAGACCTGAGACA
GTTCACTGCCATGCAGGCAGCTTAGAAA	TTTTCCTTTGTTTTATCTATTCACGTAAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT
GTTCACTGCCATGCAGGCAGCTTAGAAA	ATCGCCGTGAAATCAGACTCAGCGAATCGAATG
GTTCACTGCCATGCAGGCAGCTTAGAAA	CGAAGTGGAAAAGAAAAGAGCAACTATTGATT
GTTCACTGCCATACAGGCAGCTTAGAAA	GGAACTAACGCGGCTACGCCATAAATTATCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCATGCTGATGAATGGGATCAGGATGTTCTCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCTTCATTGCATCCCTGCGAGTTAAATTAATC
GTTCACTGCCATAAAGGCAGCTAAAAAA

>NZ_CP017671|1|1|1691416-1692406|CRT
GTTCACTGCCATACAGGCAGCTTAGAAA	TAATTTAATTTCCATTGCTGTTTTCCTCATCT
GTTCACTGCCATACAGGCAGCTTAGAAA	TTTGACACCTTTTTCACCGTCAAAAACAACAA
GTTCACTGCCATACAGGCAGCTTAGAAA	TACGATAAACATCAGTTAGTGGGTATCCAAAC
GTTCACTGCCATACAGGCAGCTTAGAAA	ATGAGCACGCTAAGTTGATTCGGCGATAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	TGACCACGTCACCGTTTCACCAACTATTGATG
GTTCACTGCCATACAGGCAGCTTAGAAA	TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGTGCAAACGTCGATTAATGGCAGCGTAGTAA
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGACATAGAGCTATCAAGAACCGCCTCAGCTC
GTTCACTGCCATGCAGGCAGCTTAGAAA	GAAAAGATAAGTTCTTGGGCAGACCTGAGACA
GTTCACTGCCATGCAGGCAGCTTAGAAA	TTTTCCTTTGTTTTATCTATTCACGTAAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT
GTTCACTGCCATGCAGGCAGCTTAGAAA	ATCGCCGTGAAATCAGACTCAGCGAATCGAATG
GTTCACTGCCATGCAGGCAGCTTAGAAA	CGAAGTGGAAAAGAAAAGAGCAACTATTGATT
GTTCACTGCCATACAGGCAGCTTAGAAA	GGAACTAACGCGGCTACGCCATAAATTATCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCATGCTGATGAATGGGATCAGGATGTTCTCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCTTCATTGCATCCCTGCGAGTTAAATTAATC
GTTCACTGCCATAAAGGCAGCTAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017671.1\|WP_042844372.1\|1685531_1686278_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP017671.1\|WP_042844266.1\|1681319_1681724_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP017671.1\|WP_042844249.1\|1703110_1703854_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP017671.1\|WP_071547932.1\|1698297_1699242_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP017671.1\|WP_042844261.1\|1686311_1687415_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP017671.1\|WP_042844257.1\|1692555_1693530_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP017671.1\|WP_042844262.1\|1684631_1685414_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP017671.1\|WP_048606790.1\|1682621_1683842_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP017671.1\|WP_048606788.1\|1681736_1682594_+\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|235847
NZ_CP017671.1\|WP_042844250.1\|1702832_1703102_-\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP017671.1\|WP_042844263.1\|1683857_1684613_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP017671.1\|WP_052219285.1\|1703866_1704325_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP017671.1\|WP_042844251.1\|1702050_1702830_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP017671.1\|WP_071547933.1\|1700276_1700912_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP017671.1\|WP_071547930.1\|1688537_1690181_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NZ_CP017671.1\|WP_071547929.1\|1687414_1688395_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP017671.1\|WP_042844253.1\|1699245_1700268_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP017671.1\|WP_042844258.1\|1690209_1691145_+\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP017671.1\|WP_042844248.1\|1704347_1704764_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NZ_CP017671.1\|WP_071547931.1\|1693526_1697006_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201

Protein	Function_ID	Function_description	E-value
NZ_CP017671.1\|WP_042844372.1\|1685531_1686278_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	1.15686e-95
NZ_CP017671.1\|WP_042844266.1\|1681319_1681724_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	5.12262e-73
NZ_CP017671.1\|WP_042844249.1\|1703110_1703854_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	5.72963e-126
NZ_CP017671.1\|WP_071547932.1\|1698297_1699242_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	6.17212e-127
NZ_CP017671.1\|WP_042844261.1\|1686311_1687415_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP017671.1\|WP_042844257.1\|1692555_1693530_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.95009e-169
NZ_CP017671.1\|WP_042844262.1\|1684631_1685414_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.42546e-152
NZ_CP017671.1\|WP_048606790.1\|1682621_1683842_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	7.91565e-151
NZ_CP017671.1\|WP_048606788.1\|1681736_1682594_+\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	2.82378e-49
NZ_CP017671.1\|WP_042844250.1\|1702832_1703102_-\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	6.16729e-32
NZ_CP017671.1\|WP_042844263.1\|1683857_1684613_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	4.1315e-110
NZ_CP017671.1\|WP_052219285.1\|1703866_1704325_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	4.6723e-29
NZ_CP017671.1\|WP_042844251.1\|1702050_1702830_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	8.13678e-69
NZ_CP017671.1\|WP_071547933.1\|1700276_1700912_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	5.3285e-51
NZ_CP017671.1\|WP_071547930.1\|1688537_1690181_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP017671.1\|WP_071547929.1\|1687414_1688395_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.71834e-140
NZ_CP017671.1\|WP_042844253.1\|1699245_1700268_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP017671.1\|WP_042844258.1\|1690209_1691145_+\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	1.68462e-99
NZ_CP017671.1\|WP_042844248.1\|1704347_1704764_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.99324e-76
NZ_CP017671.1\|WP_071547931.1\|1693526_1697006_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0

>NZ_CP017671.1|WP_042844258.1|1690209_1691145_+|flagellar-hook-associated-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRISQSENRNQQYVASRGFAKTGMTLQMSILTQMTDVTTQIDTTIIQASNQGALSDKDRHSLAEQLTGLKEQLVGLGNTTDGNGRYIFAGFKSDKPPFEIDADGNVLYHGGDKPIMQNVASDREMTTYFTGAQVFETGSDNVVNVFKALNAGIDALKIPQQDAPQADLDRAQAGMDEANRGIKAALDQISNIEAKQGLQLQEIDKLDFLADTRSIQNAARKSELLETNWTGTTTDYYKEKAMFDASQSIFKDLNSMSLFGNR
>NZ_CP017671.1|WP_071547930.1|1688537_1690181_+|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIEDISSNIGSFFTSLDAATSDASDKTLIDVFLGNSNALVSQFKDADRRLQEMERDINHQIENKVKDINTYAEKIAGLNQQISRVRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQNGNYNVTFANGLPLVTGEKANRLEAVPSSKDDSRFSIGFVGANGQAREIPDGSFRGGELSGILRSRQEVIDPAYQKLNKLALVFATKFNEVHSKGYDANGNTGKDFFEIGKGSVVSNTHNSGKADFDLSYSDVSKVTGNNYEMRFDGSEWNVTRLPESIKVSVDDSTAGTLKFDGIEVKISNSQGMTKGDSFLVKPVSGVINGMQTLISDASGFAAAGSKDSGPGDNENIKELVKLQDQKLIDGGSTFSDFYATLVNDVGSKTKQAQIDSETQNKMTESFYAQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>NZ_CP017671.1|WP_071547929.1|1687414_1688395_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MSDMQLLQGAAFDLQSLGQLKGELNKNPEQGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTREQIEPNVALSNSMLPLDEKAIQTLPPFNMQQMMRHFAPTGDMLSAPFQKIKALSLNSSNFIRRLIEPAKAASQNSGISHFLVLAQAALESGWGQREILKSDGKTSHNLFGIKAGKNWQGPVTNIMTTEVINGKTIKMRDDFRVYGSYEEAIADYISLLTENPRYKDVKKAPTPEIAARRLHQAGYATDPSYSDKLITLINQIRGHQPTANTSASRAVQAYTIDLNDIF
>NZ_CP017671.1|WP_042844261.1|1686311_1687415_+|flagellar-basal-body-P-ring-protein-FlgI
MKNKVLILLSLFCCFVFAAHSERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLNNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARTGQSVDIVVSSMGNAKSLRGGTLLMTPLKGVDGQVYAMAQGNILVGGAGASGGGSSIKVNQLNGGRITGGATIERELPSNFGQSGAINLQLNEDSFTLAQDIADAINRMGGVGSASALDSRTVQLLVPANNRDQVRFLSRVQELNVRTPMAEAKVILNSRTGSVVINRSVTLESCAVAHGSLAVTVERQTQVSQPDTPFAGGQTVVTRNTNVGIRDQGGSLQKVNASVQLNQVIQALNTLGATPNDLMSILQAMESAGCLRAKLEII
>NZ_CP017671.1|WP_042844372.1|1685531_1686278_+|flagellar-basal-body-L-ring-protein-FlgH
MIESSTISQQQKIALQTPLIATKQVGLVIALVLITSGCAHIKSRPLVDTQTTAIPSAPTAPAPNGSIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRTGKTGFLAAILPGFMQGWIGGKNTELDIKGNSDFSGKGGANANNTFKGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGSDNHVSSTQVADARIEYVGDGYINESQNMGWLQRFFLNVSPY
>NZ_CP017671.1|WP_042844262.1|1684631_1685414_+|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDLMYQNIRQPGAMSSEQTSLPSGLQMGTGARPVATMRVHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQIVPAIMIPDNANSMSIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLIYQNMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>NZ_CP017671.1|WP_042844263.1|1683857_1684613_+|flagellar-basal-body-rod-protein-FlgF
MDHVIYTAMGGARHALENQAVVSNNIANVSTAGFKAQLSAMRAVPINGDSEPTRTLVVASTPGADMSQGPLNYTGKSTDVALNDKHFLAVELADGSEAYTRNGNIQVSSEGELMIGERRLQGDGGPINVPPNAELTIGTDGTVTALLATDPPTMLGQIGRLKVVEAQPQDLLRGEDGLFHLSPQGQAANGNVLPQSERAIVTAGVIEGSNVNAAEAMVSMIANARHFEMQMKVVRSADENAQRANQLLAVS
>NZ_CP017671.1|WP_048606790.1|1682621_1683842_+|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDSIGNNISNSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRPTDVAISGNGFFRVQDKNGDIYYSRDGQFLRDKSGNLVNNQGMIVTGYPAGVDEDGNVTIQSGGVPAGINIPTDMMDAKKSDLAKLTVNLNSEDKVKDKKFDITKPDDSATYNFSTTMTAFDSQGNTHEISVYFVKESDNNWTAYAKDTNDTEAKKLGELEFDGNGKLKDADKATFAFAYNGLNGADNGTLNVDLSKTRQQKVSESSVSAIDVDGFPAGEYTTFKIEDNGLITANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWASSNASGNPMDGVPGVGQYGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNLR
>NZ_CP017671.1|WP_048606788.1|1681736_1682594_+|flagellar-basal-body-rod-modification-protein
MGIAATMYDSLDNTTAGPEPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTNPMENTDLTSQLAQIATLESMNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEIILAPLKKESTGEDSSIIKPSNPLPDEGISPDSPSNFALSDKSVMGDEGGSEEPQSEFISSPFGFFLPKLADNVEITIRDKNRMVVRTITYDTEVKPDIYDMAWDGRDNKGNLVADTKGKYYFDVKAVRAGAEVEVTKLGYTRVNGVTPGSDAPLLDVGIGQSVPLSSIFKVYPSS
>NZ_CP017671.1|WP_042844266.1|1681319_1681724_+|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESVAGPDGQPYRAKQVVFQMAPQGRNEVGGVRVSELIEDPAPPRMEYKPGHPLADEKGYVQMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ
>NZ_CP017671.1|WP_042844257.1|1692555_1693530_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWMTPQGEYRPTEYLQSWLSFWFNDEKRLAAAKVLQQSRITYLQKVWQSSRELQNEGFVYQDSTIQSALKAFHNRTIAAQDTQELLLTEAQLTKTLYKYAANNTGQKNFTRQHQAVDKANSFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAVVLPWAFICGKEGATEQEFRQQILQSFVDHQSLDFMFDVVKSLALQQNEAQQQVTQL
>NZ_CP017671.1|WP_071547931.1|1693526_1697006_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFISQCEKHALKRTRRILDAFANRIGDNTWQTLITQEGLHTVQKLLRRSASRNTAVSCHWIRSRSRSQLLWVVGRKNKFNEQGYVPVNRTEKSLLGSEQGNDWKYLPLINGFVRLAALLHDWGKASQLFQDKLNPASNMRFKGDPLRHEWVSSLLFSALVKSQKEPNSDENWLDALITSSWHEQQLQSWMKGKNQLEKPLNQLPDAASLLVWLIVSHHRLPFLANKTERLQYADQPCNSLAQLLDIVDKQWGYQNLYDASEYAQRIQQCFEFPHGLLSESKVWRQALSQAAEHLKHQLPLFDEALSNGCWRLVAEQARLCLMLGDHNYSSKEADPTWQSNMALYANTQRVNGQTAYKQRLDEHLVNVANIAANITEYLPFFVIEPPVASDINLLKQHKNASGQFSWQEDVVNTIEQYREQQQDKTEGYFVVNMASTGCGKTVANAKIMQALSEDKQSLRFILALGLRALTLQTGDEYRTRLGIKDDNLAVLIGSKAVLDLHQEDKQKTIQQELQLAEFGSESQDRLFDDEGLELNWSEEKWQGSLPEEELATVLTRPKDRALLYAPILACTIDHIMGATETLRGGRYILPYLRLMSSDLVIDEIDDFTGNDPVAIGRLVYLAGALGRKVMISSATIPPTLAVFYFNAYQQGWHIHALSHQKSLKVGCVWVDEGQYDEKKDKCIHACQIATITTADDELTVSHYRQYHNNFIEKRVKALRALVARRKAFILPIQKEQGKDLQTQYFAHIQQAILRLHQAHAYSERETQLQVSFGVVRVANIPVCVALTHYLLAAQWPEEVEIRTMAYHSQQVLLLRHEQEKHLDGVLKRKEKEGEQPEAFQNPIVRQHLDQAHRNGKAKHLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIVQMAGRVRRHRAGEVASPNIALLQYNWVAFQGNNQRDAFSKPGYENRNLNLSLSTYNLSELVDESQLLKSVDAIPRIQPITGWKTQQTTNLACLEHASIERLMGDVSTAKPAKAAVRTRSTFLSSAVLPKNRPTTLWGYTSGGWWMTALPQQFASFRESEPTKRVSLILSAKNRLHFCEYDKDSGWVTKEDEYGIGFQPLAEPLKQRLWLIRDYQQSLASRENEYQQAEQLSKRYGEISFLPRKSSGVFYHYNDQMGLSTFKVFE
>NZ_CP017671.1|WP_071547932.1|1698297_1699242_+|type-I-F-CRISPR-associated-protein-Csy2
MSSTYILKLPHIKIQNANALSSPYTIGFPAMTAWLGFMHALERKLRADGHLDIVFDSIAVISHACDLQTYRGPNDYVNSIVGTANPLNSDGTRSAFIEEARCHLDVSLLIRYGVNDGGKTKALPTQSPILEVIYDLIQTMKLAGGDILSLDKPTAHILQSDEVDGESRQGLLNSVMPGYALIERRDLMIRAMEDGQDAMDALLDYVVVENNCVEWGNENEGKSQFEWRAQRKLAGWVVPIATGYQGVSPLAQAKNQRDLDVPHRFAESVVTLGEFILANRANNINEILWQYGYDEPNNLYLCQQVASKFISSGE
>NZ_CP017671.1|WP_042844253.1|1699245_1700268_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTCWENKSHFTPLSLQEKSVRGTISNRLKGAVKNDPLKLNSEVEKANLQTVDACALGTEQDTLVHQFTLKILGGVETPSACNNVLFKKGYVQAAKGYIEKEGFRELGYRYAQNVANGRFLWRNRVGAEHIEVVVKVLNKGQSMEWVFDATQYSIHQFDTQDEKVAQLGEKIATALAHPQGALLLEITTYSQLGKAQEVYPSEELVMDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPAYGTESGAGAIAIEPYGAVTNLGTAFRTPKDNQDFYTLFDKWARGEKLSRIEDEHYVMAVLVRGGVFGESDK
>NZ_CP017671.1|WP_071547933.1|1700276_1700912_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEVTLLPDSTVSVDFLWQKVYQQIHIALADNQTAEGQSAIAVAFPEYGSVGFRLGRKIRLHAKTPEELEQLNLPKWLARLMDYAHIKSIQTVPEQSVPVSYIRRHVKGQNRIEADMQQKARLWSEKSGQSVAQCLEVLSKSRPKANNRLPFIWVTSLHAKNEKTGSRPFPLFIEKVVATQMQAGMFNCYGLSQLSNDQTLVATVPHF
>NZ_CP017671.1|WP_042844251.1|1702050_1702830_-|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAMGLTMQIAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNVITILLFLAFDGHLWLIYIIVNSFELIPIQTAPLNRDGFWVFVQFANTLFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGVIISILPRYTERLIHQAFEQLSLMFNLFI
>NZ_CP017671.1|WP_042844250.1|1702832_1703102_-|flagellar-biosynthesis-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVISVIIIAGPWMLNLLTDYMRTLLSNLPFIIG
>NZ_CP017671.1|WP_042844249.1|1703110_1703854_-|flagellar-type-III-secretion-system-pore-protein-FliP
MLPRKSLLMIAVLLFALPSSASAALPAVISHSLADGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLEVALEKGTAPLRTFMLGQTRESDLALFARIAKVGEIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>NZ_CP017671.1|WP_052219285.1|1703866_1704325_-|flagellar-biosynthetic-protein-FliO
MAITNQAEQAPASVPFLSTSVPSSELNAPAIDHSNSLTQISGSLGIIILLILIGAWLVKKLGFAPKKMGKEQIVKVTSSCSLGNKERVVVVEVNNECLVLGVTAQNISLLHQYPAQDKTTVSSVIEPLTFQSVLKKKQDAADHAASVTPLYK
>NZ_CP017671.1|WP_042844248.1|1704347_1704764_-|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHASEDLWAEALEQQKKAESASAGAQAFDNLDGQNPLNQLSDIDMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR

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Crispr_ID: NZ_CP017671_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017671_2

1701043-1701671

Unclear

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

10 spacers

cas6f,cas7f,cas5f,cas3f,cas1

The CRISPR arrays of NZ_CP017671_2

>merge|NZ_CP017671|2|1701043-1701671|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAACAATCCATTTGAGTGCAATCTAAGTGGCTAATGTTCACTGCCGTATAGGCAGCTTAGAAATGACTTAGTTGACGCAGAGCGGGGGTATCGCAGTTCACTGCCGTATAGGCAGCTTAGAAATCAATAAATGTTGCTGATACAGAATAAACACCGTTCACTGCCGTATAGGCAGCTTAGAAAACAACAAAAGTGGAAAAGTGTCAGGGAGAGACGTTCACTGCCGTATAGGCAGCTTAGAAACTGAAACATTAGAAAGTCGTGCTCAAGATATTGTTCACTGCCGTATAGGCAGCTTAGAAATTACTCTGATGCTACGTTCGAAAAAGCGTGGAGTTCACTGCCGTATAGGCAGCTTAGAAAGGATCGCAATAATTCGACTTCAAGCTCTACTCGTTCACTGCCGTATAGGCAGCTTAGAAAAGCGAATATCAACGCACCCACCGTGTCGATTTGTTCACTGCCGTATAGGCAGCTTAGAAACGATGATTCAACACCAACAAGCGCATGTAACGTGTTCACTGCCGTATAGGCAGCTCAGAAAAGTGGATTAAAGAGCTTAATTTATCAACTTAAGTTTACTGCCATATAGGCAGTTTAGAGA

>NZ_CP017671|2|2|1701043-1701611|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATCCATTTGAGTGCAATCTAAGTGGCTAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTTAGTTGACGCAGAGCGGGGGTATCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAATAAATGTTGCTGATACAGAATAAACACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGAAACATTAGAAAGTCGTGCTCAAGATATT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACTCTGATGCTACGTTCGAAAAAGCGTGGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGATCGCAATAATTCGACTTCAAGCTCTACTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGAATATCAACGCACCCACCGTGTCGATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATGATTCAACACCAACAAGCGCATGTAACGT
GTTCACTGCCGTATAGGCAGCTCAGAAA

>NZ_CP017671|2|2|1701043-1701671|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATCCATTTGAGTGCAATCTAAGTGGCTAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTTAGTTGACGCAGAGCGGGGGTATCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAATAAATGTTGCTGATACAGAATAAACACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGAAACATTAGAAAGTCGTGCTCAAGATATT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACTCTGATGCTACGTTCGAAAAAGCGTGGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGATCGCAATAATTCGACTTCAAGCTCTACTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGAATATCAACGCACCCACCGTGTCGATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATGATTCAACACCAACAAGCGCATGTAACGT
GTTCACTGCCGTATAGGCAGCTCAGAAA	AGTGGATTAAAGAGCTTAATTTATCAACTTAA
GTTTACTGCCATATAGGCAGTTTAGAGA

>NZ_CP017671|2|2|1701043-1701671|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATCCATTTGAGTGCAATCTAAGTGGCTAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTTAGTTGACGCAGAGCGGGGGTATCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAATAAATGTTGCTGATACAGAATAAACACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGAAACATTAGAAAGTCGTGCTCAAGATATT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACTCTGATGCTACGTTCGAAAAAGCGTGGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGATCGCAATAATTCGACTTCAAGCTCTACTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGAATATCAACGCACCCACCGTGTCGATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATGATTCAACACCAACAAGCGCATGTAACGT
GTTCACTGCCGTATAGGCAGCTCAGAAA	AGTGGATTAAAGAGCTTAATTTATCAACTTAA
GTTTACTGCCATATAGGCAGTTTAGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017671.1\|WP_071547931.1\|1693526_1697006_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP017671.1\|WP_042844372.1\|1685531_1686278_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP017671.1\|WP_042844249.1\|1703110_1703854_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP017671.1\|WP_042844248.1\|1704347_1704764_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NZ_CP017671.1\|WP_042844261.1\|1686311_1687415_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP017671.1\|WP_071547930.1\|1688537_1690181_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NZ_CP017671.1\|WP_042844242.1\|1707787_1708231_-\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP017671.1\|WP_071547929.1\|1687414_1688395_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP017671.1\|WP_071547932.1\|1698297_1699242_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP017671.1\|WP_042844250.1\|1702832_1703102_-\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP017671.1\|WP_042844245.1\|1705769_1706249_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NZ_CP017671.1\|WP_071547934.1\|1706413_1707787_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
NZ_CP017671.1\|WP_052219285.1\|1703866_1704325_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP017671.1\|WP_071547933.1\|1700276_1700912_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP017671.1\|WP_042844251.1\|1702050_1702830_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP017671.1\|WP_042844246.1\|1704756_1705764_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP017671.1\|WP_042844253.1\|1699245_1700268_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP017671.1\|WP_042844258.1\|1690209_1691145_+\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP017671.1\|WP_048606797.1\|1708242_1709607_-\|flagellum-specific-ATP-synthase-FliI	unknown	unknown	gnl\|CDD\|181182
NZ_CP017671.1\|WP_042844257.1\|1692555_1693530_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676

Protein	Function_ID	Function_description	E-value
NZ_CP017671.1\|WP_071547931.1\|1693526_1697006_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP017671.1\|WP_042844372.1\|1685531_1686278_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	1.15686e-95
NZ_CP017671.1\|WP_042844249.1\|1703110_1703854_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	5.72963e-126
NZ_CP017671.1\|WP_042844248.1\|1704347_1704764_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.99324e-76
NZ_CP017671.1\|WP_042844261.1\|1686311_1687415_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP017671.1\|WP_071547930.1\|1688537_1690181_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP017671.1\|WP_042844242.1\|1707787_1708231_-\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	1.72654e-38
NZ_CP017671.1\|WP_071547929.1\|1687414_1688395_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.71834e-140
NZ_CP017671.1\|WP_071547932.1\|1698297_1699242_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	6.17212e-127
NZ_CP017671.1\|WP_042844250.1\|1702832_1703102_-\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	6.16729e-32
NZ_CP017671.1\|WP_042844245.1\|1705769_1706249_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.31345e-62
NZ_CP017671.1\|WP_071547934.1\|1706413_1707787_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	3.22298e-28
NZ_CP017671.1\|WP_052219285.1\|1703866_1704325_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	4.6723e-29
NZ_CP017671.1\|WP_071547933.1\|1700276_1700912_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	5.3285e-51
NZ_CP017671.1\|WP_042844251.1\|1702050_1702830_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	8.13678e-69
NZ_CP017671.1\|WP_042844246.1\|1704756_1705764_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	6.49433e-161
NZ_CP017671.1\|WP_042844253.1\|1699245_1700268_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP017671.1\|WP_042844258.1\|1690209_1691145_+\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	1.68462e-99
NZ_CP017671.1\|WP_048606797.1\|1708242_1709607_-\|flagellum-specific-ATP-synthase-FliI	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
NZ_CP017671.1\|WP_042844257.1\|1692555_1693530_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.95009e-169

>NZ_CP017671.1|WP_071547933.1|1700276_1700912_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEVTLLPDSTVSVDFLWQKVYQQIHIALADNQTAEGQSAIAVAFPEYGSVGFRLGRKIRLHAKTPEELEQLNLPKWLARLMDYAHIKSIQTVPEQSVPVSYIRRHVKGQNRIEADMQQKARLWSEKSGQSVAQCLEVLSKSRPKANNRLPFIWVTSLHAKNEKTGSRPFPLFIEKVVATQMQAGMFNCYGLSQLSNDQTLVATVPHF
>NZ_CP017671.1|WP_042844253.1|1699245_1700268_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTCWENKSHFTPLSLQEKSVRGTISNRLKGAVKNDPLKLNSEVEKANLQTVDACALGTEQDTLVHQFTLKILGGVETPSACNNVLFKKGYVQAAKGYIEKEGFRELGYRYAQNVANGRFLWRNRVGAEHIEVVVKVLNKGQSMEWVFDATQYSIHQFDTQDEKVAQLGEKIATALAHPQGALLLEITTYSQLGKAQEVYPSEELVMDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPAYGTESGAGAIAIEPYGAVTNLGTAFRTPKDNQDFYTLFDKWARGEKLSRIEDEHYVMAVLVRGGVFGESDK
>NZ_CP017671.1|WP_071547932.1|1698297_1699242_+|type-I-F-CRISPR-associated-protein-Csy2
MSSTYILKLPHIKIQNANALSSPYTIGFPAMTAWLGFMHALERKLRADGHLDIVFDSIAVISHACDLQTYRGPNDYVNSIVGTANPLNSDGTRSAFIEEARCHLDVSLLIRYGVNDGGKTKALPTQSPILEVIYDLIQTMKLAGGDILSLDKPTAHILQSDEVDGESRQGLLNSVMPGYALIERRDLMIRAMEDGQDAMDALLDYVVVENNCVEWGNENEGKSQFEWRAQRKLAGWVVPIATGYQGVSPLAQAKNQRDLDVPHRFAESVVTLGEFILANRANNINEILWQYGYDEPNNLYLCQQVASKFISSGE
>NZ_CP017671.1|WP_071547931.1|1693526_1697006_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFISQCEKHALKRTRRILDAFANRIGDNTWQTLITQEGLHTVQKLLRRSASRNTAVSCHWIRSRSRSQLLWVVGRKNKFNEQGYVPVNRTEKSLLGSEQGNDWKYLPLINGFVRLAALLHDWGKASQLFQDKLNPASNMRFKGDPLRHEWVSSLLFSALVKSQKEPNSDENWLDALITSSWHEQQLQSWMKGKNQLEKPLNQLPDAASLLVWLIVSHHRLPFLANKTERLQYADQPCNSLAQLLDIVDKQWGYQNLYDASEYAQRIQQCFEFPHGLLSESKVWRQALSQAAEHLKHQLPLFDEALSNGCWRLVAEQARLCLMLGDHNYSSKEADPTWQSNMALYANTQRVNGQTAYKQRLDEHLVNVANIAANITEYLPFFVIEPPVASDINLLKQHKNASGQFSWQEDVVNTIEQYREQQQDKTEGYFVVNMASTGCGKTVANAKIMQALSEDKQSLRFILALGLRALTLQTGDEYRTRLGIKDDNLAVLIGSKAVLDLHQEDKQKTIQQELQLAEFGSESQDRLFDDEGLELNWSEEKWQGSLPEEELATVLTRPKDRALLYAPILACTIDHIMGATETLRGGRYILPYLRLMSSDLVIDEIDDFTGNDPVAIGRLVYLAGALGRKVMISSATIPPTLAVFYFNAYQQGWHIHALSHQKSLKVGCVWVDEGQYDEKKDKCIHACQIATITTADDELTVSHYRQYHNNFIEKRVKALRALVARRKAFILPIQKEQGKDLQTQYFAHIQQAILRLHQAHAYSERETQLQVSFGVVRVANIPVCVALTHYLLAAQWPEEVEIRTMAYHSQQVLLLRHEQEKHLDGVLKRKEKEGEQPEAFQNPIVRQHLDQAHRNGKAKHLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIVQMAGRVRRHRAGEVASPNIALLQYNWVAFQGNNQRDAFSKPGYENRNLNLSLSTYNLSELVDESQLLKSVDAIPRIQPITGWKTQQTTNLACLEHASIERLMGDVSTAKPAKAAVRTRSTFLSSAVLPKNRPTTLWGYTSGGWWMTALPQQFASFRESEPTKRVSLILSAKNRLHFCEYDKDSGWVTKEDEYGIGFQPLAEPLKQRLWLIRDYQQSLASRENEYQQAEQLSKRYGEISFLPRKSSGVFYHYNDQMGLSTFKVFE
>NZ_CP017671.1|WP_042844257.1|1692555_1693530_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWMTPQGEYRPTEYLQSWLSFWFNDEKRLAAAKVLQQSRITYLQKVWQSSRELQNEGFVYQDSTIQSALKAFHNRTIAAQDTQELLLTEAQLTKTLYKYAANNTGQKNFTRQHQAVDKANSFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAVVLPWAFICGKEGATEQEFRQQILQSFVDHQSLDFMFDVVKSLALQQNEAQQQVTQL
>NZ_CP017671.1|WP_042844258.1|1690209_1691145_+|flagellar-hook-associated-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRISQSENRNQQYVASRGFAKTGMTLQMSILTQMTDVTTQIDTTIIQASNQGALSDKDRHSLAEQLTGLKEQLVGLGNTTDGNGRYIFAGFKSDKPPFEIDADGNVLYHGGDKPIMQNVASDREMTTYFTGAQVFETGSDNVVNVFKALNAGIDALKIPQQDAPQADLDRAQAGMDEANRGIKAALDQISNIEAKQGLQLQEIDKLDFLADTRSIQNAARKSELLETNWTGTTTDYYKEKAMFDASQSIFKDLNSMSLFGNR
>NZ_CP017671.1|WP_071547930.1|1688537_1690181_+|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIEDISSNIGSFFTSLDAATSDASDKTLIDVFLGNSNALVSQFKDADRRLQEMERDINHQIENKVKDINTYAEKIAGLNQQISRVRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQNGNYNVTFANGLPLVTGEKANRLEAVPSSKDDSRFSIGFVGANGQAREIPDGSFRGGELSGILRSRQEVIDPAYQKLNKLALVFATKFNEVHSKGYDANGNTGKDFFEIGKGSVVSNTHNSGKADFDLSYSDVSKVTGNNYEMRFDGSEWNVTRLPESIKVSVDDSTAGTLKFDGIEVKISNSQGMTKGDSFLVKPVSGVINGMQTLISDASGFAAAGSKDSGPGDNENIKELVKLQDQKLIDGGSTFSDFYATLVNDVGSKTKQAQIDSETQNKMTESFYAQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>NZ_CP017671.1|WP_071547929.1|1687414_1688395_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MSDMQLLQGAAFDLQSLGQLKGELNKNPEQGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTREQIEPNVALSNSMLPLDEKAIQTLPPFNMQQMMRHFAPTGDMLSAPFQKIKALSLNSSNFIRRLIEPAKAASQNSGISHFLVLAQAALESGWGQREILKSDGKTSHNLFGIKAGKNWQGPVTNIMTTEVINGKTIKMRDDFRVYGSYEEAIADYISLLTENPRYKDVKKAPTPEIAARRLHQAGYATDPSYSDKLITLINQIRGHQPTANTSASRAVQAYTIDLNDIF
>NZ_CP017671.1|WP_042844261.1|1686311_1687415_+|flagellar-basal-body-P-ring-protein-FlgI
MKNKVLILLSLFCCFVFAAHSERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLNNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARTGQSVDIVVSSMGNAKSLRGGTLLMTPLKGVDGQVYAMAQGNILVGGAGASGGGSSIKVNQLNGGRITGGATIERELPSNFGQSGAINLQLNEDSFTLAQDIADAINRMGGVGSASALDSRTVQLLVPANNRDQVRFLSRVQELNVRTPMAEAKVILNSRTGSVVINRSVTLESCAVAHGSLAVTVERQTQVSQPDTPFAGGQTVVTRNTNVGIRDQGGSLQKVNASVQLNQVIQALNTLGATPNDLMSILQAMESAGCLRAKLEII
>NZ_CP017671.1|WP_042844372.1|1685531_1686278_+|flagellar-basal-body-L-ring-protein-FlgH
MIESSTISQQQKIALQTPLIATKQVGLVIALVLITSGCAHIKSRPLVDTQTTAIPSAPTAPAPNGSIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRTGKTGFLAAILPGFMQGWIGGKNTELDIKGNSDFSGKGGANANNTFKGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGSDNHVSSTQVADARIEYVGDGYINESQNMGWLQRFFLNVSPY
>NZ_CP017671.1|WP_042844251.1|1702050_1702830_-|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAMGLTMQIAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNVITILLFLAFDGHLWLIYIIVNSFELIPIQTAPLNRDGFWVFVQFANTLFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGVIISILPRYTERLIHQAFEQLSLMFNLFI
>NZ_CP017671.1|WP_042844250.1|1702832_1703102_-|flagellar-biosynthesis-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVISVIIIAGPWMLNLLTDYMRTLLSNLPFIIG
>NZ_CP017671.1|WP_042844249.1|1703110_1703854_-|flagellar-type-III-secretion-system-pore-protein-FliP
MLPRKSLLMIAVLLFALPSSASAALPAVISHSLADGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLEVALEKGTAPLRTFMLGQTRESDLALFARIAKVGEIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>NZ_CP017671.1|WP_052219285.1|1703866_1704325_-|flagellar-biosynthetic-protein-FliO
MAITNQAEQAPASVPFLSTSVPSSELNAPAIDHSNSLTQISGSLGIIILLILIGAWLVKKLGFAPKKMGKEQIVKVTSSCSLGNKERVVVVEVNNECLVLGVTAQNISLLHQYPAQDKTTVSSVIEPLTFQSVLKKKQDAADHAASVTPLYK
>NZ_CP017671.1|WP_042844248.1|1704347_1704764_-|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHASEDLWAEALEQQKKAESASAGAQAFDNLDGQNPLNQLSDIDMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>NZ_CP017671.1|WP_042844246.1|1704756_1705764_-|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPSNDTPVPENQGKDNIRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRQEGKEFTNTEQRIINRMLKLALGAYRDAWRPIADIEVEYVRSEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINPPMEQGHQENETWVTNLVTQVKRSELELVANFVDIPMRISRLLQLQKGDVLPIEKPDRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDEESTNE
>NZ_CP017671.1|WP_042844245.1|1705769_1706249_-|flagellar-basal-body-associated-protein-FliL
MSSRKESKSSHKGLIILLALIALAGAGFGGYTWWTTQQNTQTASEEEKRPNMPQPIFMELEPFTVNLAGADNGPDRVLYIHITLRLANEKSRKQLHEYLPEVRSRLLLLLSEQKSKNIEVHEGKLQLMKDIKQTLTPTLIPGDTDQDISDVLFTTFILR
>NZ_CP017671.1|WP_071547934.1|1706413_1707787_-|flagellar-hook-length-control-protein-FliK
MDINATIVPVAPPAKTIKSANEQQNGPKDDENQAPALPFQALLDNQQPAPKNTAVNTAVDEQALNKEIVADKLAVSDKTSASPASKTPTHGENTLEQLNFTRNLRGDGVQTALQSELLVGENSSEQPWLNNLKLSLSSQIHPSANGQLAAESLPKLGAFNQKMQQLNGDLEDITLTSDKLLDKSQLVLDEQEDKPAITAFIKNEKDERRDQPLLPLDNQRDVRSKNLTADFMPLNKKVSDKEPQSGLPTFSTDTLGSNGKGAFVTQSETSAFTTATTHQTSTQPISMMPTTSVAQAAAMNAPTVAPTLHLTSQLGSEAWQQQLSQHMLFFSRQGVSQAQIRLHPEELGSLNVHLRIEDNQAVMHFVSPHSHVRAAMESMMPVLRNALQESGIHLAQGSVGQDNLGNSSDNQQHNTHQHDGHIQATHATAGAVGISEANASVAAQKSVSRQGGINTFA
>NZ_CP017671.1|WP_042844242.1|1707787_1708231_-|flagella-biosynthesis-chaperone-FliJ
MANNNALTTLLSLAVEASEEAAKVLAQVRQTHTQMAQQLTMLENYQTEYRQTLNQTLHSGMASDKWQNYQQFLVTLELTIEQQQQQLNLWEQKVDEANRHWQEKQQRVNAFDTLIQRAEHTEHQRQNRIEQKQMDEFAQRATLRRPQ
>NZ_CP017671.1|WP_048606797.1|1708242_1709607_-|flagellum-specific-ATP-synthase-FliI
MTARLGRWIASLDDFESRMKGIPMVRRYGRLTKITGLVMEAEGIKMPLGATCFIERSINGGTDEVVCEVVGFSGPRMLLMPLADLEGISPGARVYAQSTGDDGQTSRLLPIGNELLGRVLDAQGTPLDGKGPLEVKTRAPLITPPINPLERTPISSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVGLIGERGREVKDFIENILGTDGLKRAVVVAAPADVSPLLRMQGASYATRIAEYFRDQGLSVLLIMDSLTRYSMAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIPKEHYRKIQRFKQLTSSYQRNRDLINVGAYAMGSDPMLDTAIQYYPRMSKFLQQDIDERCDYQTACEQLQQVVPSE

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Crispr_ID: NZ_CP017671_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017671_3

3999417-3999516

Orphan

Consensus_repeat	Method
AGGAGCATACAAAAGTATGTGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017671_3

>merge|NZ_CP017671|3|3999417-3999516|CRISPRCasFinder
AGGAGCATACAAAAGTATGTGACTAGGGTTGACGAGTGACGCCAACACAGGCACAACTTGAAGTATGACGAAAAAAAGGAGCATACAAAAGTATGTGACT

>NZ_CP017671|3|3|3999417-3999516|CRISPRCasFinder
AGGAGCATACAAAAGTATGTGACT	AGGGTTGACGAGTGACGCCAACACAGGCACAACTTGAAGTATGACGAAAAAA
AGGAGCATACAAAAGTATGTGACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017671.1\|WP_071548612.1\|4005239_4005962_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP017671.1\|WP_048606189.1\|4005970_4006621_-\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NZ_CP017671.1\|WP_042846184.1\|3992664_3993030_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
NZ_CP017671.1\|WP_080750895.1\|4011004_4011499_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NZ_CP017671.1\|WP_042846188.1\|3994146_3994797_+\|DUF4310-family-protein	unknown	unknown	gnl\|CDD\|132618
NZ_CP017671.1\|WP_042846198.1\|4004600_4005176_+\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP017671.1\|WP_042846191.1\|3997252_3997993_+\|KDGP-aldolase-family-protein	unknown	unknown	gnl\|CDD\|188342
NZ_CP017671.1\|WP_042846189.1\|3995015_3996155_+\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
NZ_CP017671.1\|WP_042846196.1\|4002851_4003226_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP017671.1\|WP_042846181.1\|3989871_3991809_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP017671.1\|WP_042846190.1\|3996138_3997251_+\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623
NZ_CP017671.1\|WP_004908326.1\|4004000_4004591_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP017671.1\|WP_042846186.1\|3993029_3993326_+\|DUF4312-family-protein	unknown	unknown	gnl\|CDD\|213831
NZ_CP017671.1\|WP_071548613.1\|4009499_4010906_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|183733
NZ_CP017671.1\|WP_042846194.1\|4001098_4002805_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP017671.1\|WP_042846187.1\|3993352_3994144_+\|DUF4311-domain-containing-protein	unknown	unknown	gnl\|CDD\|274659
NZ_CP017671.1\|WP_042846193.1\|4000164_4001037_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP017671.1\|WP_071548611.1\|3998141_3999203_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NZ_CP017671.1\|WP_042846202.1\|4006853_4009199_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP017671.1\|WP_042846182.1\|3992293_3992632_+\|transcriptional-antiterminator	unknown	unknown	gnl\|CDD\|132621

Protein	Function_ID	Function_description	E-value
NZ_CP017671.1\|WP_071548612.1\|4005239_4005962_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	5.15934e-124
NZ_CP017671.1\|WP_048606189.1\|4005970_4006621_-\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.5401e-141
NZ_CP017671.1\|WP_042846184.1\|3992664_3993030_+\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	5.03903e-60
NZ_CP017671.1\|WP_080750895.1\|4011004_4011499_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	2.72272e-79
NZ_CP017671.1\|WP_042846188.1\|3994146_3994797_+\|DUF4310-family-protein	gnl\|CDD\|132618	TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.	4.7593e-95
NZ_CP017671.1\|WP_042846198.1\|4004600_4005176_+\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.36931e-104
NZ_CP017671.1\|WP_042846191.1\|3997252_3997993_+\|KDGP-aldolase-family-protein	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	3.4498e-138
NZ_CP017671.1\|WP_042846189.1\|3995015_3996155_+\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
NZ_CP017671.1\|WP_042846196.1\|4002851_4003226_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	1.53859e-45
NZ_CP017671.1\|WP_042846181.1\|3989871_3991809_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.48858e-52
NZ_CP017671.1\|WP_042846190.1\|3996138_3997251_+\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP017671.1\|WP_004908326.1\|4004000_4004591_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	3.39842e-134
NZ_CP017671.1\|WP_042846186.1\|3993029_3993326_+\|DUF4312-family-protein	gnl\|CDD\|213831	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	2.4064e-33
NZ_CP017671.1\|WP_071548613.1\|4009499_4010906_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|183733	PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed.	0
NZ_CP017671.1\|WP_042846194.1\|4001098_4002805_+\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	3.79038e-130
NZ_CP017671.1\|WP_042846187.1\|3993352_3994144_+\|DUF4311-domain-containing-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	8.44086e-149
NZ_CP017671.1\|WP_042846193.1\|4000164_4001037_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP017671.1\|WP_071548611.1\|3998141_3999203_-\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	7.09602e-40
NZ_CP017671.1\|WP_042846202.1\|4006853_4009199_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP017671.1\|WP_042846182.1\|3992293_3992632_+\|transcriptional-antiterminator	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	1.68887e-30

>NZ_CP017671.1|WP_071548611.1|3998141_3999203_-|4Fe-4S-binding-protein
MTKKPRIRYQRRPGTTGGKLPWNDWRNASTWRKVVQFTLLAINLYIGITFYYWVRYYETGGATLYLPRPGGIEGWLPIAGLMNLKYTLETGSFPVIHAASMFLLVSFIIISLLLKKAFCSWMCPIGTISEYTGKIGQKLFRYQNQIDLPKWLDIPLKGLKYLLLAFFLYIALSMPAQMIQYFMMSPYGIIIDVKMLDFFRYISGVTLVSVIVLVVISLFIRNAWCRYLCPYGALLGLFSLFSPVKIRRDVESCIDCGKCAKNCPSRIPVDKLIKVRTVECTGCMTCVESCPVSSTLNFSLQVPRKKRQVPLSGVIMLVLTLGMLFSAIGVAAYFGVWDSPVPDNYWFHIIPNA
>NZ_CP017671.1|WP_042846191.1|3997252_3997993_+|KDGP-aldolase-family-protein
MKLSPNFYRDRVCLNVLAGSHQNAKDIYVAAETFVVVGVLSKNYPDLESAIADMRIYAQETDNALSVGLGAGDPNQSTMVSLISQEIQPQHVNQVFTGAPISRALLGQTETFVNALISPTGTVGMVKISTGPLSSQAPDGIVPIETAIMMLKDMGADSVKFFNMKGLKYIEEYKAIAKACAEFDFSLEPTGGIDLDNFAEILQIALDAGVKKIIPHIYSSIIDKNTGNTRPEEVRQLLQMVKQAVN
>NZ_CP017671.1|WP_042846190.1|3996138_3997251_+|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase
MQSIYDKYQLKHVINASGRMTALGVSTPTPEVVERVAYGLNHYFEIKDLVNKTGEYIASLLDVEAAVVVSCASAGIAQAVAAVIVQDDDDLLLNLHSSDKVVPREIILPKGHNVNFGAPVDTMVTLGGGKVIEAGFANECSAAQLAAKITPQTAAILYIKSHHTVQKSMLTVEQAAKVAHDHQLPLIVDAAAEEELTAYYHTGGDIVIYSGAKAIEGPTSGLVIGKKQYIEWVKRQSQGIGRAMKVGKEGILGLTLAIEQYLSATKETGAEMVNRMSKFISDLNDINGISAQVVWDGAGRDIARTEISFDENVIGKTTYQIMAELKQGNTAIYFREYKANEGKVEADIRSVSNEQLDVISKNIRLLVEGF
>NZ_CP017671.1|WP_042846189.1|3995015_3996155_+|amidohydrolase/deacetylase-family-metallohydrolase
MYTLIIKQAKRIDGAIIDILIKDGKIDAAGPELANNQQADKVIDLKGKCYVSAGWIDSHAHCFVESPIYFDDPDLAGAAGGVTSLVDAGSVGADDVDKFYQLTQKSKTNVFSLLNISRIGIIAQNELSDMNNINETCFQEAIERHNGFIVGMKARMSKSVVGENGITPLIKAKEMQKKHHLPLMVHIGNNPPNIDEVADLLTRGDIITHCFNGKPNKILGDDGYLKPSIARALARGVILDVGHGGESFSFKVAEQAMRIGTYPDIISSDIYHRNRVNGPVYSLAFVMTKFLCMGFSAEQVLRCVTEKAADLLSLPAKGYLKPGFDADITLFDLKEEPTELTDAEGEHRIGTHRFVPIAAIVGGKHIIHAEGESEHAINL
>NZ_CP017671.1|WP_042846188.1|3994146_3994797_+|DUF4310-family-protein
MTTEINKQDFWYAEWSFPIFVGLLSAGIFAGTHMYVVYGFGAFNEVAFVAMLRAGLDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGALQTGIGLGVPALFLAAGWDILVTNFWMSLLTGLLLGVLIGLLIVFARKFTIAQANSTFGADVMMGAGNTSGRFLGPLIILAAMAASIPIGIGSLIGALVFYVWQKPVAGGAILGAMLFGYFFPIAA
>NZ_CP017671.1|WP_042846187.1|3993352_3994144_+|DUF4311-domain-containing-protein
MSETASFLEILGMSLIIGGLCGFGLGAGAARMFHAPTVQGMGAFRTLGELNACEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALLTKNRSVADTLHNPKKMAIACAIIGAVVVAFLNTTASAVPAALQTTAVNVLVPAANLLVNTVMPVIFWLAAMDAGRRSGFWATLFGGCAQLIMGNAIPGLVLGILIGKGVDDNGWNRITRTMMITVVLLFVLSGFFREFDLKMITSFNLDKPLWLEYVHGLLSGK
>NZ_CP017671.1|WP_042846186.1|3993029_3993326_+|DUF4312-family-protein
MKKSIETVVRVTGQGDTKQKAIADALNSIQKTVLKNNTDIILRIEPKDVEVVSAHSQSRTEKFLFIFLPRKREHFRVVLDVSLDVTLLSVNEIPFTEQ
>NZ_CP017671.1|WP_042846184.1|3992664_3993030_+|hypothetical-protein
MKQMVVVIGDRLGKGQKVAAGVEAAGGKAIVVPGVAADMKLGDVMNAEQADLGISFCGSGGAGAITAQTKYGYKARYGMRSIEEGETAIADGCNVLGFGFMDKEELGERLVKAFNKKYGNA
>NZ_CP017671.1|WP_042846182.1|3992293_3992632_+|transcriptional-antiterminator
MSESVVVFKMLEHNLDIDEVTQKLLAVITDWLKQEDCYTTDVQQQMLQSHLRAMVARAKTGEALPEIDISLFDEISAHSIALAQRVVDTLPGLAQEETYLLSVHFEVARAND
>NZ_CP017671.1|WP_042846181.1|3989871_3991809_+|BglG-family-transcription-antiterminator
MALFTQQRHNQIFAQILNEVVPQDELAKLCSVSTRTIRSDINEINELIQEYSAHIVYERGHGYRLKIEDEALFATFTKQTEEENSIPRTSKERIDALLLKLLMQSLPVKLDDIAEEWFISRGTLQQDMGAVREQLHKYQISLESIPHQGIRLNGSEWAVRACMTETLWRRYSAQLTPDLTSFRPDCLDNLDLTYIDKVLHNSMNRFDIRISNEGHLYLVFNCAVTILRITRGHELTTTVKNDDSEEVIRKACDEISKGLIYFLGNDLSGAELSYLHDQIIAQRISNQDPSSQKVGSHNELSEYILSYINELYNYDLRNDEKLKKDLNTHLAALITRLQYHISTPNPLLSDIKQYYPFAYDVTLSALTSASKQLLPHPINEDELGYLAVHIGVSLERNYGAGSIRQTEVLVVTDAGNSTFRVVESKIMREFPQLKFSRGLTLQEYESLNEVTEDFVITTVRVSEKNKPVIKIAPFPTPYQLEQVGRLAMVDQTRPYIIERFFDERFFMVVNEKISQAELFQTVCHKLQREGYVTSDFYPSLQERESIVSTLLGEGIALPHSLGLLANKTVVATVVAPQGIEWNKETKENAYVIFLLAISKADYEEAMAIYDLFVTFVKEKTTRRLIGVKNFNEFQVIAKDSLARIL
>NZ_CP017671.1|WP_042846193.1|4000164_4001037_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQPNQAVVMASTLYIVPTPIGNMGDITQRALDVLKHVDLIAAEDTRHSGILLQNFAINARLFALHDHNEQQKADQLISKLQQGDSIALVSDAGTPLINDPGYHLVNRCREAGIRVVPLPGACAAITALSAAGLPSDRFCYEGFLPAKTKGRKDVLQSLEQETRTLIFYESTHRLLDSLADMVEVWGPERHVVLARELTKTWESIEGRPVGELLAWVKEDENRHRGEMVLIVEGYKKPEDDSAISPDVVRTLNLLQKELPPKKAAAITAEIYGLKKNMLYKLMLDNQSNE
>NZ_CP017671.1|WP_042846194.1|4001098_4002805_+|penicillin-binding-protein-activator
MRPSIFLHLKKGLICTAMLSIFALSGCQMVSDYFPPTQKTPEQSTSDVSSYQAIIDAAQGKPSMEALRAYISQEPLLKTAAERQANIDGLWKMLTQLTPEQVHGIEADEYILQGWVDLLDIYQNNQDDPDALRTGFNDWKMRYSNNPGATIPPTQLLQAMLPRVGTTPKIALFLPMSGQGQVFGQAIMQGFMDAQKGLPQTTSLPANTANAQSSGNDILDQIYAEVAATTGEAPATTDNDLVTSALRIDATPTNTQTIKVFDTTNQQMPQLLEQAKNEGFNLVVGPLLKTDVNVIAQMGAPVSVLALNELDSNQLQPRPNLCYFSLSPEDEAQNAAAYMRSEGKQMPLVLVPANAFGDRIAKAFAKGWQEKGGSTVLMQTFGSVPSLKESINRGAGIRMTGTPVNTGETVSPQLSPQIEDSTGAIDGVYIVATRDELTLIKPMIEMAISTRSRPALYTSSRSNQAGSGADYRFEMDGVKFSEVPLLAGANNSLRKQAQQKLNNDYSLFRLYAMGIDAWSLANNFDKLQQPEQLRINGASGVLTTTPNCVVFRELPWLQFKQGKILPAQ
>NZ_CP017671.1|WP_042846196.1|4002851_4003226_+|YraN-family-protein
MKTIQKPLKWLTGRYYEHQVLTFLKQQGLTFVERNARNRAGEIDLIMRDNTGWVFIEVRFRKNGDYGNALLSVNWHKRRKLLAAAKLWLAQRQESFDTSSCRFDICAITGNQFEWIQNAFNEDG
>NZ_CP017671.1|WP_004908326.1|4004000_4004591_+|DnaA-initiator-associating-protein-DiaA
MLDRIKVCFTESIQTQIAAAEALPDAISRAAMMMVQSLLNGNKILCCGNGASAATAQRFAASMIHRFETERPSLPALALNTDNAVLTAISGSKQPSEIYAKQVRALGQHGDVLMAISTHGNSSDIIKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSQRSVRIQEVHLLTVNCLCDLIDNTLFPHQDD
>NZ_CP017671.1|WP_042846198.1|4004600_4005176_+|divisome-associated-lipoprotein-YraP
MRLIPVFAIIMSTILLQGCIGAAVVGSAAVATKSATDPRTVGQQVDDGTLEARVSGQLNKDKEITGKARIIATAYKGNVLLTGQSPDMAWAERAKQIASNVEGTTAVYNEVRSGEPVDLGTASKDTWLTTKVKSKILASDSVKSGSVKVITENGEVFLLGVLTRQEGDAAAKIASETDGVRRVTTAFTYLN
>NZ_CP017671.1|WP_071548612.1|4005239_4005962_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MLTFVSRLWHWLKKITISLLVVWLFSVILFKYVPVPFSAVMAERQITAWLNLNFSYVSHSKWVDENRISPYVYLAVIAAEDQNFPHHWGFDLDAIERAYQHNMINKQSVRGASTISQQTVKNVWLWDGRSWIRKGFETAMTPVMELFWSKKRILTVYLNVAEFGEGVFGVEEAANKFFNKPASKLTMNEAALLAAVLPNPHRYSVKSPSSYVLKRQAWILNQMRLLGGKNFLKINQLASE
>NZ_CP017671.1|WP_048606189.1|4005970_4006621_-|isoprenoid-biosynthesis-glyoxalase-ElbB
MKSIAVILSGCGVFDGSEIHESVLTMLALSQNNAEVHFFAPDDNQPTVINHITGEEKSEKRNQLEESSRITRGKISPLSSADASKLDALIIPGGFGAAKNLCNFAVKGSECEINKELLSLVREMHQQKKPLGLMCIAPVMLPKMLNTSVELTIGDDSETIAQIESMGGKHVKCTVDDIVVDEVNRVVTTPAYMLAQSISEANIGINKLVKKVLEMA
>NZ_CP017671.1|WP_042846202.1|4006853_4009199_-|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKVLRGLAQYYVDLMMKLGLVRFSLLLASALVVLAMIMQMAVTIFLRGHVDSLDMVGSIFFGLIITPLAVYFLSVVVEQLEESRQRLSRMVDKLEVMRKRDAELNIQLHGNIEQLNLEIQEREKAERAHLELLEQLKQEMKYREQTQVELEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQEALENASREKTTFISTISHELRTPLNGIVGLSRILLDTNLTSEQSSYLKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVALPEFVNDLENLSGLLVQPKGLKFVMDVAPTLPKTVLTDGTRLRQVLWNLIGNAVKFTQQGEVKVSIWQEPENKIFFRVKDSGIGIPQDELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQVESEIGQGSTFTLSITAPVVEEEVAEHQDSDDDYPLPALHILLVEDIELNVVVACSVLENLGNTVDVAMNGKDALAMFAPGEYDLVLLDIQLPDMTGLDISRQLKQQYDKEDLPPLIALTANVLKDKKEYFDAGMDGVLSKPLSVPALTQVIEQFWGEHTSQNEEVENRDVTSQVDESILDCDMLEQYIELVGPKLIYDGLDVFEKMLPGYLAILDSNMVAKDQKGIVEEAHKIKGAAGSVGLKNLQKIAQQIQSPDLPAWWDNVQEWVDELKQDWKADIETLRNWVDERTKK
>NZ_CP017671.1|WP_071548613.1|4009499_4010906_+|FAD-dependent-oxidoreductase
MNSNSFNLQRREPHKKALATRKIEFVEIYEPDNVSDIQQQSSRCLSCGSPFCEWKCPLHNPISSWLKLAAEGRIIEAAELSHHTNSLPEICGRVCPQDKLCEVACVLHDDHGAVTIGHIERYINDTAFALGWRPDLSHVSPVNKRVAIIGAGPAGLACADVLVRNGVEAIVFDKHPEIGGLLTFGIPAFKLEKHVMMQRHEILAEMGVQFQLNTEIGVDLSLDALLSTYDAIFIATGAYQSIKGNLSTESIQGVYEALPYLIANTRHLMALPASTDQPYIDLHKKRVVVLGGGDTAMDCTRSAIRQGAAQVNCVYRRDKASMPGSQKEITNALDEGVQFYFNTQATKVATNENGQITGIYASRTQKGELKDGRYQVELIENSNTFIEADVVIVAFGFHPYTQSWLAEQDVEHNQHGHILASHHTGFPYQTSNQKIFAGGDAIRGSDLVVTAIADGRGAAEGILLFLGV
>NZ_CP017671.1|WP_080750895.1|4011004_4011499_-|ClpXP-protease-specificity-enhancing-factor
MMEMTPMSPRRPYLLRAHYEWLLDNDMTPHLVVDVTVPDVNVPMEFARDGQIVLNVAPRAVGNFEITNEEVRFNARFGGVPRQVYVPMSAIMAVYARENGAGMMFEPETAYDAELSSGVEDIEEPEDNITLVHEADLPDESSQEPSGDEPPRPPKGRPALRVVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017671_1	1.15\|1692287\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692287-1692318	32	CP034667	Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence	55563-55594	1	0.969
NZ_CP017671_1	1.12\|1692106\|33\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692106-1692138	33	MW145137	Providencia phage PSTNGR2lys, complete genome	43709-43741	2	0.939
NZ_CP017671_1	1.15\|1692287\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692287-1692318	32	NZ_CP028385	Providencia heimbachae strain 99101 plasmid unnamed, complete sequence	86802-86833	2	0.938
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	2555-2586	3	0.906
NZ_CP017671_1	1.16\|1692347\|32\|NZ_CP017671\|CRISPRCasFinder,CRT	1692347-1692378	32	MK047643	Phage NGI136, complete genome	1632-1663	3	0.906
NZ_CP017671_1	1.16\|1692347\|32\|NZ_CP017671\|CRISPRCasFinder,CRT	1692347-1692378	32	MW145137	Providencia phage PSTNGR2lys, complete genome	3896-3927	3	0.906
NZ_CP017671_2	2.6\|1701371\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701371-1701402	32	MW057859	Providencia phage PSTCR8lys, complete genome	17507-17538	5	0.844
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	MK448900	Streptococcus phage Javan290, complete genome	1069-1100	6	0.812
NZ_CP017671_1	1.16\|1692347\|32\|NZ_CP017671\|CRISPRCasFinder,CRT	1692347-1692378	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	15496-15527	6	0.812
NZ_CP017671_2	2.6\|1701371\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701371-1701402	32	MW145137	Providencia phage PSTNGR2lys, complete genome	24476-24507	6	0.812
NZ_CP017671_2	2.8\|1701491\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701491-1701522	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	527903-527934	6	0.812
NZ_CP017671_2	2.8\|1701491\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701491-1701522	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	528087-528118	6	0.812
NZ_CP017671_1	1.2\|1691504\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691504-1691535	32	AP013520	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26	15923-15954	7	0.781
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	AP013396	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C99-MedDCM-OCT-S44-C25	11624-11655	7	0.781
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	AP013648	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C99-MedDCM-OCT-S33-C45, * SEQUENCING IN PROGRESS *	27581-27612	7	0.781
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP009066	Borreliella afzelii K78 plasmid lp28-8, complete sequence	4688-4719	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP018752	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5	638-669	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP018752	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5	20082-20113	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	140859-140890	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP028871	Borreliella garinii strain 20047 plasmid lp32-10, complete sequence	3098-3129	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP028871	Borreliella garinii strain 20047 plasmid lp32-10, complete sequence	22553-22584	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	30879-30910	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	30892-30923	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	30885-30916	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP015806	Borrelia mayonii strain MN14-1539 plasmid lp28-3	3783-3814	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	41225-41256	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP015791	Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence	3783-3814	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	41225-41256	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_017240	Borreliella afzelii PKo plasmid lp32-10, complete sequence	25355-25386	8	0.75
NZ_CP017671_1	1.2\|1691504\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691504-1691535	32	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	321400-321431	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	205153-205184	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP031170	Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_A, complete sequence	25667-25698	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP017355	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-1, complete sequence	45478-45509	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP019735	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-1, complete sequence	21784-21815	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP017365	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-2, complete sequence	15106-15137	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP031199	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_A, complete sequence	24065-24096	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NC_012551	Lactobacillus brevis plasmid pLB925A04, complete sequence	9095-9126	8	0.75
NZ_CP017671_1	1.13\|1692167\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692167-1692198	32	NZ_CP019744	Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-1, complete sequence	95580-95611	8	0.75
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	NZ_CP024012	Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence	105889-105920	8	0.75
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_011785	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence	25148-25179	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_018993	Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence	24113-24144	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_017407	Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence	26620-26651	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_017416	Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence	25900-25931	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP031403	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence	24135-24166	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NC_001854	Borreliella burgdorferi B31 plasmid lp28-4, complete sequence	25197-25228	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP017217	Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence	30955-30986	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	MK560763	Virgibacillus phage Mimir87, complete genome	4939-4970	9	0.719
NZ_CP017671_1	1.6\|1691744\|33\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691744-1691776	33	MN693089	Marine virus AFVG_25M562, complete genome	16218-16250	9	0.727
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	NZ_KT020842	Clostridium perfringens strain JP838 plasmid pJP838B, complete sequence	4364-4395	9	0.719
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	MN855820	Bacteriophage sp. isolate 159, complete genome	2953-2984	9	0.719
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	58490-58521	9	0.719
NZ_CP017671_2	2.3\|1701191\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701191-1701222	32	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	41921-41952	9	0.719
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	NZ_CP044538	Borrelia sp. CA690 plasmid lp28-2, complete sequence	30279-30310	10	0.688
NZ_CP017671_1	1.1\|1691444\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691444-1691475	32	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	94934-94965	10	0.688
NZ_CP017671_1	1.15\|1692287\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692287-1692318	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	81511-81542	10	0.688
NZ_CP017671_1	1.15\|1692287\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1692287-1692318	32	NZ_CP049702	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence	55571-55602	10	0.688
NZ_CP017671_2	2.2\|1701131\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701131-1701162	32	NZ_CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	92089-92120	10	0.688
NZ_CP017671_2	2.6\|1701371\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701371-1701402	32	NC_019538	Aeromonas phage CC2, complete genome	95050-95081	10	0.688
NZ_CP017671_2	2.9\|1701551\|33\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701551-1701583	33	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	18154-18186	10	0.697
NZ_CP017671_2	2.9\|1701551\|33\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1701551-1701583	33	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	13106-13138	10	0.697
NZ_CP017671_1	1.2\|1691504\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691504-1691535	32	JQ287645	Sulfolobus virus STSV2, complete genome	53268-53299	11	0.656
NZ_CP017671_1	1.2\|1691504\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691504-1691535	32	JQ287645	Sulfolobus virus STSV2, complete genome	53865-53896	11	0.656
NZ_CP017671_1	1.2\|1691504\|32\|NZ_CP017671\|PILER-CR,CRISPRCasFinder,CRT	1691504-1691535	32	JQ287645	Sulfolobus virus STSV2, complete genome	54450-54481	11	0.656

1. spacer 1.15|1692287|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to CP034667 (Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence) position: , mismatch: 1, identity: 0.969

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
tcatgctgatgaatgggatcaggacgttctct	Protospacer
************************.*******

2. spacer 1.12|1692106|33|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 2, identity: 0.939

atcgccgtgaaatcagactcagcgaatcgaatg	CRISPR spacer
atcgccgtgaaatcagactcagcaaatctaatg	Protospacer
***********************.**** ****

3. spacer 1.15|1692287|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028385 (Providencia heimbachae strain 99101 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
tcatgctgatgattgggatcaggatgtgctct	Protospacer
************ ************** ****

4. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 3, identity: 0.906

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgctctcttcctcatct	Protospacer
 ****************** *.**********

5. spacer 1.16|1692347|32|NZ_CP017671|CRISPRCasFinder,CRT matches to MK047643 (Phage NGI136, complete genome) position: , mismatch: 3, identity: 0.906

tcttcattgcatccctgcgagttaaattaatc	CRISPR spacer
tcttcattgcatccctgcgagttaaattatca	Protospacer
***************************** .

6. spacer 1.16|1692347|32|NZ_CP017671|CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 3, identity: 0.906

tcttcattgcatccctgcgagttaaattaatc	CRISPR spacer
tattcattgcatccctgcgaattaaattattc	Protospacer
* ******************.******** **

7. spacer 2.6|1701371|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MW057859 (Providencia phage PSTCR8lys, complete genome) position: , mismatch: 5, identity: 0.844

ttactctgatgctacgttcgaaaaagcgtgga	CRISPR spacer
ctacagcgaggctacgttcgaaaaagcgtgga	Protospacer
.***  .** **********************

8. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MK448900 (Streptococcus phage Javan290, complete genome) position: , mismatch: 6, identity: 0.812

taatttaatttccattgctgttttcctcatct	CRISPR spacer
ggactttatttccattgcttttttcctcattt	Protospacer
 .*.** ************ **********.*

9. spacer 1.16|1692347|32|NZ_CP017671|CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 6, identity: 0.812

tcttcattgcatccctgcgagttaaattaatc	CRISPR spacer
tcttcattgcatccctgcgagttacacttgat	Protospacer
************************ *.* . .

10. spacer 2.6|1701371|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 6, identity: 0.812

ttactctgatgctacgttcgaaaaagcgtgga	CRISPR spacer
gtatgatgaggctacgttcgaaaaagcgtggg	Protospacer
 **.  *** *********************.

11. spacer 2.8|1701491|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 6, identity: 0.812

agcgaatatcaacgcacccaccg----tgtcgattt	CRISPR spacer
agcgaatatccacgcacccatcgacaatgtcg----	Protospacer
********** *********.**    *****

12. spacer 2.8|1701491|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 6, identity: 0.812

agcgaatatcaacgcacccaccg----tgtcgattt	CRISPR spacer
agcgaatatccacgcacccatcgacaatgtcg----	Protospacer
********** *********.**    *****

13. spacer 1.2|1691504|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to AP013520 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26) position: , mismatch: 7, identity: 0.781

-tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
tgctgac-tctttttcaaagtcaaaaacaacag	Protospacer
  .**** .********  *************.

14. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to AP013396 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C99-MedDCM-OCT-S44-C25) position: , mismatch: 7, identity: 0.781

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
gcaccaaatgttgctggtacagaataaccaaa	Protospacer
 ** .***********.********** **

15. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to AP013648 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C99-MedDCM-OCT-S33-C45, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
gcaccaaatgttgctggtacagaataaccaaa	Protospacer
 ** .***********.********** **

16. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009066 (Borreliella afzelii K78 plasmid lp28-8, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

17. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018752 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

18. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018752 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

19. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
caatttcatttccattgctgtttttgttgtta	Protospacer
.***** *****************. *..*.

20. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028871 (Borreliella garinii strain 20047 plasmid lp32-10, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

21. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028871 (Borreliella garinii strain 20047 plasmid lp32-10, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

22. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaatttccattgatgtttttagcgtaa	Protospacer
 **************** ******.  *.*

23. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaatttccattgatgtttttagcgtaa	Protospacer
 **************** ******.  *.*

24. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaatttccattgatgtttttagcgtaa	Protospacer
 **************** ******.  *.*

25. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015806 (Borrelia mayonii strain MN14-1539 plasmid lp28-3) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

26. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

27. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015791 (Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

28. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

29. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_017240 (Borreliella afzelii PKo plasmid lp32-10, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

30. spacer 1.2|1691504|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 8, identity: 0.75

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
tcttgctgttttttcatcttcaaaaacaacaa	Protospacer
*.* .*  .*******.* *************

31. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagtggaaaagaaaagagcaactattgatt	CRISPR spacer
catgacggaaaagaaaagaacaactattgtat	Protospacer
*. ...*************.*********  *

32. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031170 (Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_A, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

33. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017355 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

34. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019735 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

35. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017365 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-2, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

36. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031199 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_A, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

37. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_012551 (Lactobacillus brevis plasmid pLB925A04, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

38. spacer 1.13|1692167|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019744 (Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

39. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024012 (Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcaataaatgttgctgatacaga-----ataaacacc	CRISPR spacer
tccataaaagttgctgatacagatccgtatag-----	Protospacer
** ***** **************     ***.

40. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_011785 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

41. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_018993 (Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

42. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_017407 (Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

43. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_017416 (Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

44. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031403 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

45. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_001854 (Borreliella burgdorferi B31 plasmid lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

46. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017217 (Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaattcccattgatgtttttagcgtaa	Protospacer
 *********.****** ******.  *.*

47. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MK560763 (Virgibacillus phage Mimir87, complete genome) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
taatttaatttcttttgctgtttcctcgtcat	Protospacer
************. *********.*..  . *

48. spacer 1.6|1691744|33|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MN693089 (Marine virus AFVG_25M562, complete genome) position: , mismatch: 9, identity: 0.727

tgtttctaagtaccgaacaagagaaaactttgt	CRISPR spacer
tgtttttaagtaacgaacaagagatgctagttt	Protospacer
*****.****** *********** . .  * *

49. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT020842 (Clostridium perfringens strain JP838 plasmid pJP838B, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
tcaataaatgatgctgatatagaagtttttac	Protospacer
********** ********.****    .  *

50. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to MN855820 (Bacteriophage sp. isolate 159, complete genome) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
tcaataaatgttagtgatacagaagctctttc	Protospacer
************. **********    . .*

51. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacaga-------ataaacacc	CRISPR spacer
tcaataaatgatgctgataaagatgtctttat-------	Protospacer
********** ******** ***       **

52. spacer 2.3|1701191|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacaga-------ataaacacc	CRISPR spacer
tcaataaatgatgctgataaagatgtctttat-------	Protospacer
********** ******** ***       **

53. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044538 (Borrelia sp. CA690 plasmid lp28-2, complete sequence) position: , mismatch: 10, identity: 0.688

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagtttgg	Protospacer
 ***********.**** ******.  . *

54. spacer 1.1|1691444|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

taatttaatttccattgctgttttcctcatct	CRISPR spacer
taatttactttccaatgctgtttatggcgctg	Protospacer
******* ****** ******** .  *...

55. spacer 1.15|1692287|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 10, identity: 0.688

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
atatgctgacgaatgggatcaggctgaagcgg	Protospacer
 .*******.************* **   .

56. spacer 1.15|1692287|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049702 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence) position: , mismatch: 10, identity: 0.688

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
atatgctgacgaatgggatcaggctgaagcgg	Protospacer
 .*******.************* **   .

57. spacer 2.2|1701131|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023712 (Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgacttagttgacgcagagcgggggtatcgca	CRISPR spacer
tcgagctgttcccgcagagcgggggtatcggc	Protospacer
* .  . ***  ******************

58. spacer 2.6|1701371|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NC_019538 (Aeromonas phage CC2, complete genome) position: , mismatch: 10, identity: 0.688

ttactctgatgctacgttcgaaaaagcgtgga	CRISPR spacer
agactatgatgatacgttcgaaaaacagaacc	Protospacer
  *** ***** *************  * .

59. spacer 2.9|1701551|33|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 10, identity: 0.697

cgatgattcaacaccaacaagcgcatgtaacgt	CRISPR spacer
atgagattcaacatcaacaagcgcaggttgact	Protospacer
  . *********.*********** ** .  *

60. spacer 2.9|1701551|33|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 10, identity: 0.697

cgatgattcaacaccaacaagcgcatgtaacgt	CRISPR spacer
atgagattcaacatcaacaagcgcaggttgact	Protospacer
  . *********.*********** ** .  *

61. spacer 1.2|1691504|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 11, identity: 0.656

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aggatgggctttttcaccttcaacaacaacac	Protospacer
   .  . ********** **** *******

62. spacer 1.2|1691504|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 11, identity: 0.656

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aggatgggctttttcaccttcaacaacaacac	Protospacer
   .  . ********** **** *******

63. spacer 1.2|1691504|32|NZ_CP017671|PILER-CR,CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 11, identity: 0.656

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aggatgggctttttcaccttcaacaacaacac	Protospacer
   .  . ********** **** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

560601 : 569046

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071547662.1\|560601_563022_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	4.8e-139	37.9
WP_042848441.1\|563018_563657_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.9e-63	55.8
WP_042848439.1\|563653_564553_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_042848437.1\|564590_565157_+	molecular chaperone TorD family protein	A0A077SLS7	Escherichia_phage	2.7e-16	31.3
WP_042848436.1\|565382_565805_+	DoxX family protein	NA	NA	NA	NA
WP_071547664.1\|565892_566687_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	3.0e-42	41.7
WP_071547665.1\|566698_567925_-	RtcB family protein	A0A1V0EEW8	Caulobacter_phage	9.5e-136	62.9
WP_042848432.1\|567927_569046_-	slipin family protein	A0A2P1EMF1	Moumouvirus	1.3e-14	28.1

DBSCAN-SWA_2

1178447 : 1189046

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042848391.1\|1178447_1179647_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.5e-29	38.5
WP_042848390.1\|1180374_1181346_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.3e-132	72.2
WP_071547823.1\|1181360_1183493_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.4e-206	51.6
WP_042848388.1\|1183505_1183919_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.9e-12	33.6
WP_042848387.1\|1183927_1184155_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-16	56.2
WP_042848385.1\|1184442_1184901_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2K9L300	Tupanvirus	6.0e-19	46.6
WP_014657708.1\|1185118_1185328_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	7.7e-22	79.7
WP_042848383.1\|1185484_1186450_-	lipoyl synthase	NA	NA	NA	NA
WP_071547824.1\|1186574_1187204_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_042848378.1\|1187435_1187699_-	YbeD family protein	NA	NA	NA	NA
WP_071547825.1\|1187834_1189046_-	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	5.9e-106	49.9

DBSCAN-SWA_3

1324348 : 1374487

Bacillus_phage(11.11%)

tRNA,lysis,protease,integrase

attL 1323546:1323561|attR 1386945:1386960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1323546:1323561	attL	NA	NA	NA	NA
WP_042846592.1\|1324348_1325290_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_042846591.1\|1325448_1325697_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_042846590.1\|1325788_1326628_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_164975526.1\|1326665_1326827_-	hypothetical protein	NA	NA	NA	NA
WP_042846589.1\|1327076_1329185_+	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	2.3e-52	27.7
WP_042846588.1\|1329333_1329837_-	DNA starvation/stationary phase protection protein Dps	A0A222YTY5	Streptomyces_phage	2.4e-08	32.2
WP_042846587.1\|1330163_1331051_-	threonine/homoserine exporter RhtA	NA	NA	NA	NA
WP_042846586.1\|1331361_1331937_+	TIGR00730 family Rossman fold protein	A0A1G5S9X4	Enterococcus_phage	4.8e-21	35.7
WP_042846585.1\|1331970_1332429_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_042846584.1\|1332679_1334278_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	1.4e-59	28.2
WP_042846644.1\|1334388_1334724_-	phnA family protein	NA	NA	NA	NA
WP_048606504.1\|1334910_1335669_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_042846582.1\|1335668_1336910_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_094301199.1\|1337261_1338353_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_042846580.1\|1338554_1339214_+	GTP cyclohydrolase I FolE	R9TJA5	Vibrio_phage	6.8e-56	56.3
WP_071547849.1\|1339217_1340360_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_042846578.1\|1340401_1341106_-	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_071547850.1\|1341474_1342170_+	carbohydrate-binding family 9-like protein	NA	NA	NA	NA
WP_042846576.1\|1342346_1343264_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_071547851.1\|1343325_1344687_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_042846574.1\|1344702_1345548_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_042846573.1\|1345547_1346330_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_071547852.1\|1346347_1347235_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_071547854.1\|1347789_1348254_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_071547855.1\|1348338_1348779_-	hypothetical protein	NA	NA	NA	NA
WP_071547856.1\|1348882_1349389_-	hypothetical protein	NA	NA	NA	NA
WP_071547857.1\|1349942_1350344_-	DUF413 domain-containing protein	NA	NA	NA	NA
WP_071547858.1\|1350438_1350981_-	DinB family protein	NA	NA	NA	NA
WP_071547859.1\|1351105_1352329_-	erythromycin esterase family protein	NA	NA	NA	NA
WP_071547860.1\|1352509_1352983_-	trimethoprim-resistant dihydrofolate reductase DfrA	A0A1B2IBQ4	Erwinia_phage	3.4e-17	33.7
WP_008169685.1\|1353344_1354313_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.9e-54	37.9
WP_071547861.1\|1354492_1356667_-	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	1.7e-47	26.1
WP_071547862.1\|1356659_1357100_-	hypothetical protein	NA	NA	NA	NA
WP_071547863.1\|1357092_1357761_-	hypothetical protein	NA	NA	NA	NA
WP_071547864.1\|1357757_1360379_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_071547865.1\|1360375_1361848_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_071547866.1\|1362000_1363698_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_042846570.1\|1364126_1364750_+	hypothetical protein	NA	NA	NA	NA
WP_071547867.1\|1364809_1365502_+	hypothetical protein	NA	NA	NA	NA
WP_071547869.1\|1366707_1367595_-	cytidine deaminase	NA	NA	NA	NA
WP_042846566.1\|1367799_1368495_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_042846565.1\|1368494_1368962_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_042846564.1\|1369106_1371134_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	26.8
WP_042846563.1\|1371472_1372585_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_042846562.1\|1372868_1373429_+	LemA family protein	NA	NA	NA	NA
WP_042846560.1\|1373530_1374487_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
1386945:1386960	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1915293 : 1950642

Escherichia_phage(35.71%)

transposase,integrase

attL 1908546:1908559|attR 1947871:1947886

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1908546:1908559	attL	NA	NA	NA	NA
WP_048821757.1\|1915293_1916247_-\|integrase	site-specific integrase	A0A1L4BKH1	Thermus_phage	7.7e-08	29.5
1908546:1908559	attL	NA	NA	NA	NA
WP_158516022.1\|1916646_1916820_+	hypothetical protein	NA	NA	NA	NA
WP_071547991.1\|1916859_1917114_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|1917677_1918382_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000344784.1\|1918872_1919733_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_004235553.1\|1920157_1921090_-\|transposase	IS5-like element ISKpn13 family transposase	Q38213	Escherichia_phage	5.2e-94	55.7
WP_000812657.1\|1921613_1922879_+\|transposase	IS4-like element ISPa12 family transposase	NA	NA	NA	NA
WP_011751353.1\|1923158_1923800_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	6.6e-56	45.9
WP_004235553.1\|1923999_1924932_+\|transposase	IS5-like element ISKpn13 family transposase	Q38213	Escherichia_phage	5.2e-94	55.7
WP_122037036.1\|1925057_1925345_-	hypothetical protein	A0A1W6JNS2	Morganella_phage	5.5e-10	47.0
WP_004197545.1\|1925440_1925713_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085947932.1\|1925837_1926597_+\|transposase	IS5-like element ISKpn12 family transposase	NA	NA	NA	NA
WP_004197549.1\|1927489_1927675_+	hypothetical protein	NA	NA	NA	NA
WP_162832797.1\|1927740_1928879_-\|transposase	IS3-like element ISKpn11 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.0e-19	33.7
WP_000587836.1\|1928931_1929225_-	hypothetical protein	NA	NA	NA	NA
WP_000557452.1\|1929237_1930098_-	aminoglycoside N-acetyltransferase AAC(3)-IIe	NA	NA	NA	NA
WP_000027057.1\|1930239_1931100_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|1931282_1931840_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_071547993.1\|1932003_1935012_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.4
WP_002026779.1\|1935845_1936031_+	hypothetical protein	NA	NA	NA	NA
1935342:1935355	attR	NA	NA	NA	NA
WP_077252464.1\|1936250_1936532_+	hypothetical protein	NA	NA	NA	NA
1935342:1935355	attR	NA	NA	NA	NA
WP_000359986.1\|1936512_1937286_-	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_001067855.1\|1938610_1939315_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000050481.1\|1939512_1941054_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|1941458_1942298_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|1942291_1942639_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000470556.1\|1942743_1943034_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001007673.1\|1943094_1943922_-	oxacillin-hydrolyzing class D beta-lactamase OXA-2	NA	NA	NA	NA
WP_032488579.1\|1944003_1944558_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
WP_000845054.1\|1944707_1945721_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001162012.1\|1946026_1946584_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001138073.1\|1946586_1949559_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_000427623.1\|1949637_1950642_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2094611 : 2102064

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004263721.1\|2094611_2094908_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0
WP_042844064.1\|2094984_2095923_-	hypothetical protein	NA	NA	NA	NA
WP_048606996.1\|2096038_2097040_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.2e-16	25.4
WP_042844062.1\|2097045_2097813_+	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	3.4e-06	28.4
WP_042844061.1\|2097941_2099087_+	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	8.0e-36	27.4
WP_042844059.1\|2099086_2100079_+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	4.3e-38	33.4
WP_042844058.1\|2100078_2102064_+	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	1.9e-21	26.3

DBSCAN-SWA_6

3152518 : 3168024

Burkholderia_phage(28.57%)

tail,lysis,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071548251.1\|3152518_3153766_-\|tail	phage tail protein	E5AGC6	Erwinia_phage	8.5e-15	40.4
WP_071548252.1\|3153771_3154431_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.9e-38	40.5
WP_071548253.1\|3154427_3155615_-\|plate	baseplate J/gp47 family protein	A0A2H5BG53	Pseudoalteromonas_phage	1.7e-73	38.7
WP_071548254.1\|3155607_3155952_-	hypothetical protein	Q6IWQ2	Burkholderia_phage	1.8e-12	35.7
WP_071548255.1\|3155948_3156641_-	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	5.2e-30	39.7
WP_071548256.1\|3156644_3157460_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	2.3e-45	37.5
WP_071548257.1\|3157452_3157749_-	hypothetical protein	NA	NA	NA	NA
WP_071548258.1\|3157748_3158279_-	hypothetical protein	NA	NA	NA	NA
WP_071548259.1\|3158275_3160339_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	2.5e-19	27.3
WP_071548260.1\|3160403_3161090_-	hypothetical protein	NA	NA	NA	NA
WP_071548261.1\|3161237_3161696_-	hypothetical protein	Q6IWV4	Burkholderia_phage	2.0e-22	47.2
WP_071548262.1\|3161747_3162200_-	hypothetical protein	I7ATP4	Escherichia_phage	2.3e-23	39.6
WP_071548263.1\|3162210_3163698_-	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	7.3e-82	37.3
WP_081363958.1\|3163708_3164152_-\|lysis	lysis protein	NA	NA	NA	NA
WP_167363357.1\|3164160_3164334_-	hypothetical protein	NA	NA	NA	NA
WP_048607794.1\|3164315_3164786_-	lysozyme	A0A1W6JNW4	Morganella_phage	1.9e-47	57.9
WP_042844233.1\|3164785_3165055_-	bacteriophage protein	A0A2H4FNF0	Salmonella_phage	2.5e-25	66.7
WP_042844957.1\|3165162_3165669_-	hypothetical protein	NA	NA	NA	NA
WP_042844959.1\|3165990_3166497_-	hypothetical protein	NA	NA	NA	NA
WP_048607795.1\|3166747_3167551_-	antitermination protein	F1C595	Cronobacter_phage	1.4e-55	43.6
WP_042844962.1\|3167562_3168024_-	DUF1367 family protein	H9C173	Pectobacterium_phage	6.5e-29	38.3

DBSCAN-SWA_7

3458738 : 3548643

125

Morganella_phage(16.25%)

coat,capsid,tail,portal,integrase,transposase,head,lysis,terminase

attL 3466577:3466623|attR 3547520:3547566

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081363963.1\|3458738_3458957_+\|transposase	transposase	A4JX31	Burkholderia_virus	2.1e-06	46.8
WP_071548327.1\|3459087_3459408_+	hypothetical protein	NA	NA	NA	NA
WP_071548328.1\|3459392_3459713_-	DUF3024 domain-containing protein	NA	NA	NA	NA
WP_071548329.1\|3459942_3460230_-	hypothetical protein	A0A1W6JPH4	Morganella_phage	1.3e-32	77.3
WP_036960459.1\|3460972_3461161_-	hypothetical protein	NA	NA	NA	NA
WP_071548330.1\|3461816_3462122_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_071548331.1\|3462266_3462938_+	hypothetical protein	NA	NA	NA	NA
WP_071548332.1\|3462950_3463208_+	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_071548333.1\|3463636_3464053_+	hypothetical protein	A0A1W6JPI4	Morganella_phage	1.7e-60	83.2
WP_071548334.1\|3464112_3464793_-	hypothetical protein	NA	NA	NA	NA
WP_071548335.1\|3464859_3465432_-	hypothetical protein	NA	NA	NA	NA
WP_158516030.1\|3465577_3465742_-	hypothetical protein	NA	NA	NA	NA
WP_081363964.1\|3465909_3466413_-\|integrase	integrase arm-type DNA-binding domain-containing protein	E5AGD0	Erwinia_phage	1.6e-36	47.8
3466577:3466623	attL	NA	NA	NA	NA
WP_071548336.1\|3469243_3470104_-	phage antirepressor Ant	I6S627	Salmonella_phage	1.2e-73	48.1
WP_071548337.1\|3470109_3470319_-	hypothetical protein	NA	NA	NA	NA
WP_071548338.1\|3470315_3470471_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_071548339.1\|3470578_3470830_+	Arc family DNA-binding protein	A5VW60	Enterobacteria_phage	2.5e-06	42.7
WP_094301217.1\|3471219_3471699_+	hypothetical protein	NA	NA	NA	NA
WP_071548341.1\|3471709_3474049_-	hypothetical protein	Q76H13	Enterobacteria_phage	2.1e-22	40.3
WP_094301236.1\|3475430_3476129_-	DNA transfer protein	A0A2H5BFK5	Salmonella_phage	4.5e-58	67.2
WP_071548347.1\|3476146_3476596_-	DUF2824 family protein	G5DA79	Enterobacteria_phage	5.1e-71	83.8
WP_158516031.1\|3476603_3477326_-\|tail	phage tail protein	B6SCW1	Bacteriophage	4.1e-22	31.8
WP_094301237.1\|3477322_3478378_-	hypothetical protein	Q9T1S0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	5.8e-150	69.6
WP_071548351.1\|3479087_3479585_-	packaged DNA stabilization gp4 family protein	A0A2D1GLR5	Escherichia_phage	1.8e-48	63.8
WP_071548352.1\|3479562_3479772_-	hypothetical protein	NA	NA	NA	NA
WP_071548353.1\|3479826_3481110_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	7.8e-165	66.7
WP_071548355.1\|3481109_3482024_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	7.7e-98	63.2
WP_071548356.1\|3482038_3484129_-\|portal	portal protein	A0A2H4FNE2	Salmonella_phage	2.4e-235	65.3
WP_071548358.1\|3484131_3485574_-	DNA packaging protein	Q2A0C1	Sodalis_phage	2.1e-222	75.6
WP_071548360.1\|3485554_3486043_-\|terminase	terminase small subunit	A0A088C409	Shewanella_sp._phage	7.1e-26	48.0
WP_071548362.1\|3486126_3486324_-	hypothetical protein	NA	NA	NA	NA
WP_071548364.1\|3486410_3486638_-	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	1.9e-10	48.6
WP_071548367.1\|3486755_3487124_-	hypothetical protein	A0AR14	Salmonella_phage	7.4e-44	74.4
WP_071548369.1\|3487350_3487800_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	2.4e-12	42.4
WP_071548371.1\|3487801_3488284_-	TIGR02594 family protein	A0A1U9ZAE8	Proteus_phage	1.4e-66	76.3
WP_071548373.1\|3488270_3488549_-	hypothetical protein	NA	NA	NA	NA
WP_071548375.1\|3488545_3488959_-	hypothetical protein	NA	NA	NA	NA
WP_071548379.1\|3489386_3489962_-	S-adenosylmethionine-binding protein	A0A193GYV6	Enterobacter_phage	7.2e-78	75.3
WP_071548381.1\|3490323_3490935_-	hypothetical protein	A0A2H4JCH5	uncultured_Caudovirales_phage	7.3e-44	48.6
WP_071548383.1\|3490931_3491123_-	hypothetical protein	A0A088CC23	Shigella_phage	2.0e-08	56.6
WP_071548385.1\|3491112_3491478_-	RusA family crossover junction endodeoxyribonuclease	E5AGG1	Erwinia_phage	5.8e-41	66.9
WP_071548387.1\|3491474_3491765_-	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	6.5e-35	75.0
WP_071548388.1\|3491864_3492308_-	recombination protein NinB	A0A1P8DTD8	Proteus_phage	1.5e-30	87.7
WP_071548390.1\|3492309_3492594_-	hypothetical protein	E5AGF1	Erwinia_phage	3.1e-21	52.2
WP_081363967.1\|3492586_3492811_-	Lar family restriction alleviation protein	A0A2I7RLZ1	Vibrio_phage	1.2e-15	52.6
WP_158516032.1\|3492807_3493047_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_158516033.1\|3493033_3493285_-	hypothetical protein	NA	NA	NA	NA
WP_071548396.1\|3493271_3493499_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_071548398.1\|3493498_3493891_-	ASCH domain-containing protein	A0A1S6L2Y8	Erwinia_phage	4.2e-29	49.6
WP_071548400.1\|3493916_3495287_-	replicative DNA helicase	K7P852	Enterobacteria_phage	8.1e-168	66.2
WP_071548402.1\|3495286_3496120_-	replication protein	A0A0N7KZ97	Stx2-converting_phage	4.9e-83	57.6
WP_036978872.1\|3496305_3496623_-	transcriptional regulator	A0A1P8DTF0	Proteus_phage	8.1e-23	50.0
WP_071548404.1\|3496802_3497030_-	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	7.6e-23	69.3
WP_071548406.1\|3497138_3497831_+	helix-turn-helix transcriptional regulator	G8C7L8	Escherichia_phage	5.3e-43	50.3
WP_071548408.1\|3498373_3498565_+	hypothetical protein	G5DMM6	Enterobacter_virus	8.4e-07	44.3
WP_145927305.1\|3498862_3499102_+	hypothetical protein	NA	NA	NA	NA
WP_071548412.1\|3499131_3499353_+	hypothetical protein	A0A1B0VMC0	Pseudomonas_phage	1.1e-07	50.0
WP_071548413.1\|3499354_3499720_+	hypothetical protein	A0A1P8DTE8	Proteus_phage	6.8e-05	30.7
WP_071548415.1\|3499784_3500726_+	hypothetical protein	A0A2I7QK72	Vibrio_phage	3.0e-20	47.3
WP_167363358.1\|3500931_3501108_+	hypothetical protein	A0A1P8DTG5	Proteus_phage	6.7e-19	84.2
WP_071548419.1\|3501118_3501592_+	class I SAM-dependent methyltransferase	A0A1W6JP48	Morganella_phage	1.2e-67	74.2
WP_071548421.1\|3501733_3502087_+	hypothetical protein	NA	NA	NA	NA
WP_071548423.1\|3502102_3502975_+	ATP-binding protein	A0A1B1P9H8	Acinetobacter_phage	1.6e-60	52.0
WP_071548425.1\|3502975_3503446_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	3.5e-46	61.1
WP_071548427.1\|3503458_3504013_+	hypothetical protein	A0A2I7QTL0	Vibrio_phage	2.1e-29	37.9
WP_145927306.1\|3504090_3504426_+	hypothetical protein	NA	NA	NA	NA
WP_071548429.1\|3504701_3505022_+	hypothetical protein	NA	NA	NA	NA
WP_071548431.1\|3505021_3505351_+	hypothetical protein	NA	NA	NA	NA
WP_071548433.1\|3505690_3505918_+	hypothetical protein	NA	NA	NA	NA
WP_071548435.1\|3505904_3506537_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.9e-63	61.3
WP_071548438.1\|3506988_3508146_+\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	6.4e-174	75.8
WP_071548440.1\|3508377_3509601_+\|integrase	site-specific integrase	V5YSU2	Pseudomonas_phage	2.2e-36	30.8
WP_071548442.1\|3511170_3515481_-	DUF1983 domain-containing protein	Q7Y3Z3	Yersinia_phage	1.1e-191	48.3
WP_071548444.1\|3515481_3515880_-	hypothetical protein	A0A2H4IYI8	uncultured_Caudovirales_phage	2.1e-36	51.5
WP_145927307.1\|3515969_3516809_-	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	1.4e-05	38.7
WP_071548448.1\|3516915_3517497_-	hypothetical protein	Q7Y3Z7	Yersinia_phage	1.2e-48	47.9
WP_071548450.1\|3517496_3518093_-	hypothetical protein	S4TSP7	Salmonella_phage	2.3e-55	53.6
WP_071548452.1\|3518095_3521200_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	7.7e-65	32.0
WP_071548453.1\|3521232_3521457_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_071548455.1\|3521513_3521906_-	hypothetical protein	A0A1W6JP08	Morganella_phage	2.0e-23	46.6
WP_071548457.1\|3521905_3522391_-\|tail	phage tail protein	A0A1W6JP06	Morganella_phage	2.3e-56	74.0
WP_071548459.1\|3522451_3522787_-	DUF3168 domain-containing protein	A0A1W6JP05	Morganella_phage	8.0e-29	58.2
WP_071548461.1\|3522783_3523233_-	HK97 gp10 family phage protein	A0A1W6JP15	Morganella_phage	2.6e-46	65.5
WP_071548463.1\|3523225_3523552_-\|head	phage head closure protein	A0A1W6JP44	Morganella_phage	4.4e-40	77.1
WP_071548465.1\|3523561_3523888_-\|head,tail	phage gp6-like head-tail connector protein	A0A1P8DTJ4	Proteus_phage	1.1e-41	76.9
WP_071548467.1\|3524182_3525397_-\|capsid	phage major capsid protein	A0A1P8DTJ7	Proteus_phage	4.8e-188	82.9
WP_071548469.1\|3526267_3527605_-\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	5.6e-198	75.8
WP_071548470.1\|3527605_3529348_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.1e-143	45.3
WP_071548472.1\|3529301_3529769_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.2e-43	61.0
WP_071548474.1\|3529892_3530105_-	hypothetical protein	NA	NA	NA	NA
WP_071548476.1\|3530106_3530460_-	HNH endonuclease	F1C587	Cronobacter_phage	4.1e-39	66.1
WP_145927308.1\|3530441_3531080_-	hypothetical protein	NA	NA	NA	NA
WP_071548480.1\|3531540_3531729_-	hypothetical protein	A0A2I7RUD6	Vibrio_phage	1.2e-21	85.2
WP_071548482.1\|3531800_3532175_-	hypothetical protein	NA	NA	NA	NA
WP_141240661.1\|3532185_3532467_-	hypothetical protein	NA	NA	NA	NA
WP_158516034.1\|3532732_3533122_-	hypothetical protein	NA	NA	NA	NA
WP_071548488.1\|3533106_3533463_-	DUF882 domain-containing protein	A0A0G2SSI0	Proteus_phage	3.6e-35	62.3
WP_071548490.1\|3533459_3533828_-	hypothetical protein	NA	NA	NA	NA
WP_071548492.1\|3533827_3534241_-	hypothetical protein	NA	NA	NA	NA
WP_071548494.1\|3534393_3534612_+	hypothetical protein	NA	NA	NA	NA
WP_071548496.1\|3534598_3534985_-	DUF1327 domain-containing protein	NA	NA	NA	NA
WP_081363969.1\|3535002_3535317_-	hypothetical protein	NA	NA	NA	NA
WP_071548497.1\|3535888_3536287_-	antitermination protein	Q8W638	Enterobacteria_phage	1.9e-29	48.3
WP_071548499.1\|3536318_3536858_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	3.1e-46	50.9
WP_071548501.1\|3536854_3537241_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.8e-24	51.7
WP_071548503.1\|3537597_3538065_-	hypothetical protein	NA	NA	NA	NA
WP_048608715.1\|3538066_3538705_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	2.2e-83	65.6
WP_071548868.1\|3538704_3538950_-	hypothetical protein	NA	NA	NA	NA
WP_071548504.1\|3538949_3540011_-	conserved phage C-terminal domain-containing protein	A0A248SL49	Klebsiella_phage	8.5e-32	48.6
WP_071548505.1\|3540020_3540200_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_071548507.1\|3540482_3540941_-	hypothetical protein	A0A1W6JP72	Morganella_phage	1.5e-49	64.0
WP_071548508.1\|3540998_3541184_-	cell division protein	NA	NA	NA	NA
WP_071548509.1\|3541286_3541919_+	LexA family transcriptional regulator	K7PLZ5	Enterobacterial_phage	1.2e-38	42.1
WP_071548510.1\|3542017_3542227_+	hypothetical protein	NA	NA	NA	NA
WP_071548511.1\|3542256_3542502_+	hypothetical protein	NA	NA	NA	NA
WP_071548869.1\|3542476_3542710_-	hypothetical protein	NA	NA	NA	NA
WP_071548870.1\|3542818_3543007_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	9.1e-14	70.6
WP_071548512.1\|3543159_3544062_+	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	1.6e-79	51.5
WP_071548513.1\|3544144_3544921_+	hypothetical protein	A0A248SL66	Klebsiella_phage	4.4e-38	38.3
WP_081363970.1\|3544935_3545406_+	hypothetical protein	A0A1W6JPA7	Morganella_phage	3.2e-47	57.1
WP_071548515.1\|3545408_3546080_+	hypothetical protein	A0A077KCB2	Edwardsiella_phage	4.1e-64	52.4
WP_071548516.1\|3546082_3546631_+	hypothetical protein	NA	NA	NA	NA
WP_071548517.1\|3546620_3547193_+	3'-5' exoribonuclease	A0A1W6JP74	Morganella_phage	1.2e-51	58.4
WP_071548518.1\|3547229_3547445_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_071548519.1\|3547785_3548643_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.8e-31	33.8
3547520:3547566	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4588361 : 4703585

111

Salmonella_phage(43.59%)

tRNA,protease,capsid,tail,plate,holin,portal,head,integrase,terminase

attL 4649315:4649358|attR 4682473:4682516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071548717.1\|4588361_4589459_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_042846651.1\|4589518_4589908_-	YijD family membrane protein	NA	NA	NA	NA
WP_042846652.1\|4589920_4590577_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_042846653.1\|4591008_4592406_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_042846654.1\|4592485_4593391_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
WP_042846655.1\|4595062_4595410_+	hypothetical protein	NA	NA	NA	NA
WP_071548718.1\|4595474_4596851_-	argininosuccinate lyase	NA	NA	NA	NA
WP_042846657.1\|4597013_4598234_-	argininosuccinate synthase	NA	NA	NA	NA
WP_042846658.1\|4598278_4599055_-	acetylglutamate kinase	NA	NA	NA	NA
WP_071548719.1\|4599069_4600074_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_042846660.1\|4600176_4601340_+	acetylornithine deacetylase	NA	NA	NA	NA
WP_042846661.1\|4601578_4602463_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_042846662.1\|4602526_4603591_-	linear amide C-N hydrolase	NA	NA	NA	NA
WP_042846663.1\|4604209_4605610_+	glutamate decarboxylase	NA	NA	NA	NA
WP_042846664.1\|4605721_4607272_+	glutamate:gamma-aminobutyrate antiporter	NA	NA	NA	NA
WP_042846665.1\|4607343_4609983_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_155405705.1\|4609951_4610095_-	hypothetical protein	NA	NA	NA	NA
WP_042846666.1\|4610385_4612827_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_042846667.1\|4612839_4614000_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_004265315.1\|4614315_4614633_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_071548720.1\|4614917_4615661_+	hypothetical protein	NA	NA	NA	NA
WP_048605758.1\|4615898_4616636_+	porin family protein	NA	NA	NA	NA
WP_004265313.1\|4616703_4616919_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_042846670.1\|4617138_4619337_+	primosomal protein N'	NA	NA	NA	NA
WP_042846671.1\|4619608_4620637_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_042846672.1\|4620966_4621776_+	cell division protein FtsN	NA	NA	NA	NA
WP_004265304.1\|4621944_4622475_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_042846673.1\|4622486_4623821_+	HslU--HslV peptidase ATPase subunit	A0A173GFL6	Erwinia_phage	1.3e-42	27.7
WP_042846674.1\|4624145_4625066_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_042846675.1\|4625186_4625711_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_042846676.1\|4626043_4626283_-	cell division protein ZapB	NA	NA	NA	NA
WP_042846677.1\|4626587_4627448_+	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	3.0e-19	29.9
WP_042846678.1\|4627451_4628978_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_071548721.1\|4629263_4630730_+	hypothetical protein	NA	NA	NA	NA
WP_071548722.1\|4631131_4633714_+	hypothetical protein	NA	NA	NA	NA
WP_048605741.1\|4633797_4634982_-	multidrug efflux MFS transporter EmrD	S4TR35	Salmonella_phage	1.2e-13	26.7
WP_042846681.1\|4635430_4636177_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_042846682.1\|4636266_4636686_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_048605756.1\|4636737_4637352_+	DUF1454 family protein	NA	NA	NA	NA
WP_042846683.1\|4637530_4638301_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_071548723.1\|4638726_4639671_+	OmpG family monomeric porin	NA	NA	NA	NA
WP_071548724.1\|4640096_4641977_+	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_042846686.1\|4642085_4643042_+	OmpG family monomeric porin	NA	NA	NA	NA
WP_165568272.1\|4643200_4644181_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_042846688.1\|4644452_4645430_-	6-phosphofructokinase	NA	NA	NA	NA
WP_042846689.1\|4645834_4646779_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_071548725.1\|4646775_4647417_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_042846691.1\|4647647_4648400_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_042846692.1\|4648628_4649210_-	HutD family protein	NA	NA	NA	NA
4649315:4649358	attL	NA	NA	NA	NA
WP_071548726.1\|4649526_4650297_+	hypothetical protein	NA	NA	NA	NA
WP_071548727.1\|4650328_4650547_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	4.0e-21	70.3
WP_071548728.1\|4650618_4651716_-	phage late control D family protein	E5G6Q3	Salmonella_phage	2.5e-119	59.2
WP_071548729.1\|4651712_4652159_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.8e-42	63.4
WP_071548730.1\|4652161_4654987_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	7.8e-117	41.9
WP_036962273.1\|4654979_4655099_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	7.2e-09	66.7
WP_036962040.1\|4655113_4655422_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.9e-17	56.5
WP_071548731.1\|4655431_4655947_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	4.4e-50	57.6
WP_071548732.1\|4655949_4657122_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.0e-168	72.9
WP_081363991.1\|4657936_4658260_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_145927311.1\|4658404_4658974_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.8e-21	68.0
WP_048606836.1\|4660571_4661183_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	6.7e-74	65.3
WP_071548735.1\|4661175_4662087_-\|plate	baseplate J/gp47 family protein	F1BUP3	Erwinia_phage	6.5e-105	65.1
WP_036962053.1\|4662089_4662431_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	8.7e-31	61.3
WP_071548736.1\|4662427_4663051_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.3e-51	53.2
WP_071548737.1\|4663057_4663438_-	hypothetical protein	NA	NA	NA	NA
WP_071548738.1\|4663526_4664144_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	2.4e-31	38.8
WP_036962064.1\|4664140_4664569_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	6.9e-25	44.1
WP_071548888.1\|4664552_4665104_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_036962066.1\|4665146_4665590_-	structural protein	A0A0D4DAE2	Escherichia_phage	7.6e-27	44.2
WP_036962068.1\|4665582_4665888_-\|holin	phage holin family protein	E7C9S8	Salmonella_phage	2.1e-23	56.3
WP_071548739.1\|4665891_4666095_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.0e-15	56.7
WP_071548740.1\|4666091_4666568_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	7.7e-25	45.7
WP_081363977.1\|4666656_4667289_-	hypothetical protein	A0A077K804	Ralstonia_phage	1.7e-35	41.9
WP_071548742.1\|4667316_4668411_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	6.5e-120	61.7
WP_071548743.1\|4668423_4669251_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	3.6e-54	46.7
WP_071548744.1\|4669426_4671184_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	2.6e-272	75.5
WP_071548745.1\|4671183_4672221_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	6.8e-143	70.7
WP_071548746.1\|4672807_4673722_-	hypothetical protein	NA	NA	NA	NA
WP_071548747.1\|4673734_4674382_-	hypothetical protein	NA	NA	NA	NA
WP_071548748.1\|4674414_4675197_-	TIGR04255 family protein	NA	NA	NA	NA
WP_071548749.1\|4675432_4677841_-	replication endonuclease	M1SV59	Escherichia_phage	2.8e-163	47.7
WP_071548750.1\|4677833_4678157_-	hypothetical protein	NA	NA	NA	NA
WP_071548751.1\|4678156_4678981_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	1.2e-60	46.6
WP_081363978.1\|4678973_4679276_-	DUF3850 domain-containing protein	A0A2P0W9X8	Enterobacter_phage	2.3e-06	39.4
WP_071548753.1\|4679272_4679494_-	TraR/DksA family transcriptional regulator	F1BUS2	Erwinia_phage	1.1e-10	47.9
WP_071548754.1\|4679486_4679798_-	DUF2732 family protein	NA	NA	NA	NA
WP_071548755.1\|4679815_4680247_-	DUF5347 family protein	NA	NA	NA	NA
WP_071548757.1\|4680385_4680598_-	hypothetical protein	NA	NA	NA	NA
WP_071548758.1\|4680599_4680890_-	hypothetical protein	A0A0M4RCW1	Salmonella_phage	6.1e-33	65.6
WP_071548759.1\|4681012_4681312_+	helix-turn-helix transcriptional regulator	A0A0M5M1I9	Salmonella_phage	9.4e-21	56.6
WP_071548760.1\|4681378_4682350_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	5.6e-123	66.9
WP_071548761.1\|4682607_4683183_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
4682473:4682516	attR	NA	NA	NA	NA
WP_042846693.1\|4683333_4684032_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	29.5
WP_042846694.1\|4684028_4685399_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	4.3e-20	26.0
WP_052219352.1\|4685881_4687321_+	capsule assembly Wzi family protein	NA	NA	NA	NA
WP_071548762.1\|4687928_4688918_+	NAD/NADP octopine/nopaline dehydrogenase family protein	NA	NA	NA	NA
WP_071548763.1\|4688920_4690729_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_071548764.1\|4690729_4691119_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_071548765.1\|4691120_4691525_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_081363979.1\|4691461_4692349_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_071548767.1\|4692341_4693172_+	LicD family protein	A0A1V0SAS8	Catovirus	7.1e-10	52.9
WP_081363980.1\|4693186_4694299_+	glycosyltransferase	NA	NA	NA	NA
WP_158516037.1\|4694371_4695337_+	EpsG family protein	NA	NA	NA	NA
WP_071548770.1\|4695377_4696337_+	glycosyltransferase	NA	NA	NA	NA
WP_071548771.1\|4696351_4697176_+	glycosyltransferase	NA	NA	NA	NA
WP_071548772.1\|4697185_4698133_+	NAD-dependent epimerase/dehydratase family protein	A0A223FN07	Murmansk_poxvirus	2.9e-07	24.2
WP_071548773.1\|4698180_4699326_+	polysaccharide export protein	NA	NA	NA	NA
WP_071548774.1\|4699331_4699760_+	protein tyrosine phosphatase	NA	NA	NA	NA
WP_071548775.1\|4699792_4701874_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_071548776.1\|4701891_4702917_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.2e-86	49.5
WP_042846710.1\|4703081_4703585_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017672

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37516 : 46452

uncultured_Caudovirales_phage(50.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081364008.1\|37516_40543_-\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	1.1e-34	22.5
WP_071548982.1\|40733_41351_+	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.3e-10	27.6
WP_071548920.1\|41520_43518_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	1.1e-21	25.7
WP_071548921.1\|43589_44447_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	7.8e-44	37.8
WP_071548922.1\|44449_45928_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.3e-195	73.4
WP_081363998.1\|46212_46452_-	hypothetical protein	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-17	56.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017671

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017672

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection